Query 028940
Match_columns 201
No_of_seqs 172 out of 584
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11833 DUF3353: Protein of u 100.0 1.3E-60 2.7E-65 402.2 20.6 182 19-200 1-194 (194)
2 COG0484 DnaJ DnaJ-class molecu 99.4 5.8E-13 1.3E-17 122.1 6.0 53 7-59 1-61 (371)
3 KOG0713 Molecular chaperone (D 99.3 3.2E-12 6.9E-17 115.5 5.7 56 7-63 13-76 (336)
4 smart00271 DnaJ DnaJ molecular 99.3 5.5E-12 1.2E-16 85.7 5.2 48 10-57 1-57 (60)
5 PF00226 DnaJ: DnaJ domain; I 99.3 8.6E-12 1.9E-16 86.2 5.7 52 11-62 1-61 (64)
6 PTZ00100 DnaJ chaperone protei 99.2 7.1E-12 1.5E-16 98.5 4.9 52 5-56 60-115 (116)
7 PRK09430 djlA Dna-J like membr 99.2 7.9E-12 1.7E-16 110.1 5.4 53 7-59 197-264 (267)
8 PRK14296 chaperone protein Dna 99.2 1.3E-11 2.7E-16 113.2 6.1 54 7-60 1-61 (372)
9 cd06257 DnaJ DnaJ domain or J- 99.2 1.1E-11 2.4E-16 82.6 4.2 46 11-56 1-54 (55)
10 PTZ00037 DnaJ_C chaperone prot 99.2 1.4E-11 3E-16 114.8 5.9 54 6-59 24-81 (421)
11 PRK14288 chaperone protein Dna 99.2 2.1E-11 4.5E-16 111.6 6.0 50 9-58 2-59 (369)
12 PRK14299 chaperone protein Dna 99.2 2.4E-11 5.2E-16 107.8 6.2 55 7-61 1-62 (291)
13 PRK14286 chaperone protein Dna 99.2 3E-11 6.4E-16 110.6 6.2 55 7-61 1-63 (372)
14 PRK14276 chaperone protein Dna 99.2 3.3E-11 7.3E-16 110.5 6.5 55 7-61 1-62 (380)
15 PRK14287 chaperone protein Dna 99.2 3.2E-11 7E-16 110.4 6.0 55 7-61 1-62 (371)
16 PRK14282 chaperone protein Dna 99.2 3.7E-11 8E-16 109.8 6.2 53 7-59 1-62 (369)
17 PRK14279 chaperone protein Dna 99.2 3.6E-11 7.9E-16 110.8 6.0 57 5-61 4-68 (392)
18 PRK14283 chaperone protein Dna 99.1 5.8E-11 1.2E-15 108.8 6.2 52 7-58 2-60 (378)
19 PRK14280 chaperone protein Dna 99.1 5.7E-11 1.2E-15 108.9 6.1 55 7-61 1-62 (376)
20 PRK10767 chaperone protein Dna 99.1 6.4E-11 1.4E-15 108.1 6.2 55 7-61 1-63 (371)
21 PRK14295 chaperone protein Dna 99.1 7E-11 1.5E-15 108.8 6.0 51 8-58 7-65 (389)
22 KOG0721 Molecular chaperone (D 99.1 7.7E-11 1.7E-15 101.3 5.2 51 7-57 96-154 (230)
23 PRK14285 chaperone protein Dna 99.1 8.3E-11 1.8E-15 107.5 5.8 51 9-59 2-60 (365)
24 PRK14294 chaperone protein Dna 99.1 1E-10 2.2E-15 106.8 6.3 57 7-63 1-65 (366)
25 PRK14277 chaperone protein Dna 99.1 1.1E-10 2.4E-15 107.3 6.2 55 8-62 3-65 (386)
26 PRK14301 chaperone protein Dna 99.1 1.2E-10 2.7E-15 106.6 6.2 52 7-58 1-60 (373)
27 PRK14297 chaperone protein Dna 99.1 1.1E-10 2.4E-15 107.0 5.8 54 7-60 1-62 (380)
28 PRK14300 chaperone protein Dna 99.1 1.5E-10 3.2E-15 106.0 6.6 54 9-62 2-62 (372)
29 PRK14298 chaperone protein Dna 99.1 1.4E-10 3.1E-15 106.4 6.0 50 9-58 4-60 (377)
30 PRK10266 curved DNA-binding pr 99.1 1.7E-10 3.7E-15 102.9 6.2 51 7-57 1-58 (306)
31 PRK14278 chaperone protein Dna 99.1 1.7E-10 3.6E-15 105.9 6.3 50 9-58 2-58 (378)
32 PRK14291 chaperone protein Dna 99.1 2.2E-10 4.7E-15 105.2 6.4 51 9-59 2-59 (382)
33 PRK14281 chaperone protein Dna 99.0 2.7E-10 5.8E-15 105.2 6.2 52 9-60 2-61 (397)
34 PRK14289 chaperone protein Dna 99.0 2.8E-10 6.1E-15 104.5 6.3 53 7-59 2-62 (386)
35 PRK14284 chaperone protein Dna 99.0 3.8E-10 8.3E-15 103.9 5.9 49 10-58 1-57 (391)
36 TIGR02349 DnaJ_bact chaperone 99.0 5.2E-10 1.1E-14 101.4 5.9 48 11-58 1-55 (354)
37 PHA03102 Small T antigen; Revi 99.0 5.2E-10 1.1E-14 91.7 4.6 56 8-63 3-64 (153)
38 KOG0715 Molecular chaperone (D 99.0 8.1E-10 1.8E-14 98.5 6.0 56 7-63 40-102 (288)
39 PRK14290 chaperone protein Dna 99.0 6.9E-10 1.5E-14 101.3 5.7 49 10-58 3-60 (365)
40 PRK14292 chaperone protein Dna 99.0 7.3E-10 1.6E-14 101.2 5.6 49 10-58 2-57 (371)
41 PRK14293 chaperone protein Dna 99.0 1E-09 2.2E-14 100.5 6.3 53 9-61 2-61 (374)
42 KOG0712 Molecular chaperone (D 98.9 1.1E-09 2.3E-14 99.6 5.9 50 8-57 2-56 (337)
43 COG2214 CbpA DnaJ-class molecu 98.8 4.2E-09 9.2E-14 84.7 5.6 57 7-63 3-68 (237)
44 KOG0717 Molecular chaperone (D 98.7 8.3E-09 1.8E-13 96.8 4.7 55 7-61 5-68 (508)
45 PTZ00341 Ring-infected erythro 98.7 3.2E-08 6.8E-13 99.9 6.0 55 9-63 572-633 (1136)
46 TIGR03835 termin_org_DnaJ term 98.7 3.3E-08 7.2E-13 97.8 5.9 53 10-62 2-61 (871)
47 KOG0719 Molecular chaperone (D 98.6 6.6E-08 1.4E-12 84.3 5.5 62 7-69 11-85 (264)
48 KOG0691 Molecular chaperone (D 98.6 6.6E-08 1.4E-12 86.8 5.4 55 9-63 4-66 (296)
49 PHA02624 large T antigen; Prov 98.6 4.9E-08 1.1E-12 94.9 4.1 59 6-64 7-71 (647)
50 KOG0716 Molecular chaperone (D 98.5 9.3E-08 2E-12 84.7 4.7 54 9-63 30-91 (279)
51 PRK05014 hscB co-chaperone Hsc 98.5 2.3E-07 4.9E-12 77.0 5.7 54 10-63 1-69 (171)
52 KOG0718 Molecular chaperone (D 98.4 1.9E-07 4.1E-12 88.0 4.9 55 7-61 6-71 (546)
53 COG5407 SEC63 Preprotein trans 98.4 1.6E-07 3.4E-12 88.5 4.3 54 8-61 96-162 (610)
54 PRK03578 hscB co-chaperone Hsc 98.3 1E-06 2.2E-11 73.6 6.0 55 9-63 5-74 (176)
55 PRK01356 hscB co-chaperone Hsc 98.3 1E-06 2.2E-11 73.0 5.6 51 10-61 2-65 (166)
56 PRK00294 hscB co-chaperone Hsc 98.3 1.8E-06 3.8E-11 72.1 6.2 55 7-61 1-70 (173)
57 KOG0720 Molecular chaperone (D 98.2 1.5E-06 3.2E-11 81.8 3.8 55 3-57 228-289 (490)
58 KOG0624 dsRNA-activated protei 98.0 5E-06 1.1E-10 76.9 4.3 56 8-64 392-458 (504)
59 KOG0723 Molecular chaperone (D 98.0 7.2E-06 1.6E-10 63.8 4.0 55 5-59 51-109 (112)
60 KOG0722 Molecular chaperone (D 97.9 3.5E-06 7.6E-11 74.8 1.7 48 9-56 32-86 (329)
61 KOG0568 Molecular chaperone (D 97.9 1.5E-05 3.3E-10 70.1 5.4 52 11-62 48-106 (342)
62 KOG0714 Molecular chaperone (D 97.8 1.7E-05 3.7E-10 67.0 3.1 34 9-42 2-35 (306)
63 KOG0550 Molecular chaperone (D 97.5 6.9E-05 1.5E-09 70.4 3.4 56 9-64 372-436 (486)
64 KOG1789 Endocytosis protein RM 97.5 0.00015 3.3E-09 74.5 5.4 59 3-61 1274-1341(2235)
65 PRK01773 hscB co-chaperone Hsc 97.4 0.00029 6.4E-09 58.8 5.9 53 10-63 2-69 (173)
66 KOG1150 Predicted molecular ch 97.3 0.00027 5.9E-09 61.0 4.4 55 10-64 53-116 (250)
67 PF13446 RPT: A repeated domai 97.2 0.00064 1.4E-08 47.1 4.4 52 7-61 2-53 (62)
68 TIGR00714 hscB Fe-S protein as 96.6 0.0041 8.9E-08 51.0 5.0 37 22-58 3-52 (157)
69 COG1076 DjlA DnaJ-domain-conta 96.1 0.0043 9.3E-08 51.4 2.8 33 10-42 113-145 (174)
70 PF03656 Pam16: Pam16; InterP 96.1 0.007 1.5E-07 48.4 3.8 57 6-63 54-114 (127)
71 COG5269 ZUO1 Ribosome-associat 94.4 0.053 1.2E-06 49.1 4.2 56 9-65 42-110 (379)
72 PF06570 DUF1129: Protein of u 90.5 9.7 0.00021 32.1 14.3 33 27-59 10-42 (206)
73 PRK07668 hypothetical protein; 87.2 21 0.00046 31.8 16.5 135 27-170 10-165 (254)
74 COG5552 Uncharacterized conser 81.9 4.1 8.9E-05 30.2 5.1 44 13-56 6-53 (88)
75 PF04341 DUF485: Protein of un 73.1 18 0.00039 26.9 6.5 62 138-199 10-72 (91)
76 PF06738 DUF1212: Protein of u 71.3 55 0.0012 26.7 13.3 44 121-164 124-169 (193)
77 PTZ00352 60S ribosomal protein 68.9 9.9 0.00022 33.0 4.9 66 2-67 122-200 (212)
78 PRK11427 multidrug efflux syst 68.9 43 0.00092 33.9 9.9 97 79-186 5-107 (683)
79 PLN00014 light-harvesting-like 68.8 20 0.00043 31.8 6.8 68 50-119 112-184 (250)
80 PF10041 DUF2277: Uncharacteri 68.4 9.8 0.00021 28.1 4.1 25 16-40 9-33 (78)
81 PF01102 Glycophorin_A: Glycop 62.8 13 0.00027 29.7 4.0 36 90-144 59-94 (122)
82 PRK11056 hypothetical protein; 61.1 72 0.0016 25.5 8.0 80 113-197 26-109 (120)
83 COG4858 Uncharacterized membra 54.4 1.5E+02 0.0032 25.9 15.5 33 27-59 24-56 (226)
84 PF11351 DUF3154: Protein of u 52.1 94 0.002 24.4 7.4 56 31-89 3-62 (123)
85 KOG0431 Auxilin-like protein a 49.4 19 0.00042 34.4 3.6 30 13-42 391-420 (453)
86 PF04246 RseC_MucC: Positive r 48.5 1.1E+02 0.0024 23.8 7.3 59 91-166 59-117 (135)
87 KOG3442 Uncharacterized conser 47.3 36 0.00077 27.5 4.3 48 7-54 56-107 (132)
88 TIGR01337 apcB allophycocyanin 47.2 29 0.00062 28.9 3.9 48 10-57 113-160 (167)
89 PF07226 DUF1422: Protein of u 47.0 1.2E+02 0.0026 24.1 7.2 65 128-197 41-109 (117)
90 PF03729 DUF308: Short repeat 47.0 70 0.0015 21.2 5.3 59 104-162 3-70 (72)
91 PRK05771 V-type ATP synthase s 46.9 2.6E+02 0.0057 27.5 11.2 80 86-170 330-418 (646)
92 COG4709 Predicted membrane pro 46.0 1.5E+02 0.0033 25.5 8.1 24 146-169 114-137 (195)
93 TIGR02230 ATPase_gene1 F0F1-AT 45.7 76 0.0017 24.4 5.8 30 133-165 61-90 (100)
94 PF01988 VIT1: VIT family; In 45.2 1.9E+02 0.0041 24.4 13.0 23 142-164 190-212 (213)
95 COG0597 LspA Lipoprotein signa 44.3 43 0.00092 27.9 4.5 21 123-143 73-93 (167)
96 COG5481 Uncharacterized conser 43.4 47 0.001 23.6 3.9 45 20-64 2-47 (67)
97 TIGR00069 hisD histidinol dehy 42.7 35 0.00076 32.3 4.2 37 22-66 33-69 (393)
98 PF04932 Wzy_C: O-Antigen liga 42.3 96 0.0021 23.7 6.1 32 111-142 6-37 (163)
99 COG0141 HisD Histidinol dehydr 42.1 48 0.001 31.7 5.0 37 22-66 61-97 (425)
100 PRK00877 hisD bifunctional his 39.9 41 0.00088 32.2 4.2 37 22-66 65-101 (425)
101 CHL00089 apcF allophycocyanin 39.9 42 0.0009 28.1 3.8 46 11-56 115-161 (169)
102 PRK13770 histidinol dehydrogen 39.8 42 0.00091 32.0 4.2 36 22-65 57-92 (416)
103 PRK10692 hypothetical protein; 39.5 79 0.0017 24.1 4.8 40 157-197 21-60 (92)
104 PF14490 HHH_4: Helix-hairpin- 39.5 42 0.0009 24.7 3.4 46 9-58 41-86 (94)
105 PF10762 DUF2583: Protein of u 39.3 82 0.0018 23.8 4.9 40 157-197 21-60 (89)
106 PRK12447 histidinol dehydrogen 39.2 44 0.00095 32.0 4.3 36 22-65 58-93 (426)
107 PF11368 DUF3169: Protein of u 39.1 77 0.0017 27.3 5.5 27 141-167 4-30 (248)
108 PF13311 DUF4080: Protein of u 39.1 38 0.00082 28.3 3.5 32 8-40 9-42 (190)
109 PF05884 ZYG-11_interact: Inte 38.8 3.1E+02 0.0068 25.1 13.1 36 135-170 153-189 (299)
110 cd06572 Histidinol_dh Histidin 37.4 46 0.001 31.4 4.1 39 21-67 36-74 (390)
111 PF07331 TctB: Tripartite tric 37.2 1.9E+02 0.004 22.1 8.3 56 97-155 69-124 (141)
112 PF07281 INSIG: Insulin-induce 36.4 2.7E+02 0.0058 23.7 8.9 56 94-151 78-137 (193)
113 PF00815 Histidinol_dh: Histid 36.3 50 0.0011 31.5 4.1 37 21-65 49-85 (412)
114 COG2962 RarD Predicted permeas 36.2 1.6E+02 0.0034 27.0 7.1 49 101-149 128-176 (293)
115 PF08006 DUF1700: Protein of u 35.4 2.4E+02 0.0053 22.9 8.8 7 52-58 29-35 (181)
116 PRK11677 hypothetical protein; 34.9 33 0.00072 27.7 2.4 20 150-169 4-23 (134)
117 COG5393 Predicted membrane pro 34.8 66 0.0014 25.9 4.0 22 123-144 89-110 (131)
118 TIGR01191 ccmC heme exporter p 34.0 2.4E+02 0.0051 23.8 7.5 59 129-189 29-91 (184)
119 PF03671 Ufm1: Ubiquitin fold 33.5 22 0.00048 26.1 1.1 30 7-39 11-40 (76)
120 smart00150 SPEC Spectrin repea 33.3 1.2E+02 0.0026 20.8 4.8 22 35-56 44-65 (101)
121 COG3763 Uncharacterized protei 33.2 57 0.0012 23.8 3.1 24 144-167 2-25 (71)
122 cd01766 Ufm1 Urm1-like ubiquit 33.2 34 0.00074 25.3 2.0 30 7-39 11-40 (82)
123 COG3167 PilO Tfp pilus assembl 32.8 82 0.0018 27.3 4.5 35 22-56 56-93 (211)
124 TIGR03144 cytochr_II_ccsB cyto 32.8 2.9E+02 0.0063 23.7 8.1 42 146-189 152-193 (243)
125 PF11460 DUF3007: Protein of u 32.7 30 0.00066 26.9 1.7 52 146-201 4-56 (104)
126 PRK07027 cobalamin biosynthesi 32.4 54 0.0012 25.7 3.2 31 16-46 8-38 (126)
127 PRK00523 hypothetical protein; 32.3 60 0.0013 23.7 3.1 23 145-167 4-26 (72)
128 PF02554 CstA: Carbon starvati 32.3 1E+02 0.0022 29.1 5.4 33 134-166 175-207 (376)
129 COG1076 DjlA DnaJ-domain-conta 32.2 68 0.0015 26.3 3.9 40 24-63 17-69 (174)
130 PF06781 UPF0233: Uncharacteri 32.2 66 0.0014 24.2 3.4 17 146-162 66-82 (87)
131 PRK01844 hypothetical protein; 31.6 63 0.0014 23.6 3.1 23 145-167 3-25 (72)
132 cd03166 CD63_LEL Tetraspanin, 31.4 1.1E+02 0.0024 21.8 4.6 28 24-55 8-35 (99)
133 PRK00907 hypothetical protein; 30.8 88 0.0019 23.6 4.0 42 11-56 18-83 (92)
134 TIGR03759 conj_TIGR03759 integ 30.0 90 0.002 27.0 4.3 43 10-54 37-80 (200)
135 PF05437 AzlD: Branched-chain 29.3 2.3E+02 0.0049 20.7 8.4 63 81-156 28-95 (99)
136 KOG3767 Sideroflexin [General 28.5 49 0.0011 30.6 2.6 31 12-42 56-86 (328)
137 PRK14788 lipoprotein signal pe 28.5 97 0.0021 26.5 4.3 11 159-169 95-105 (200)
138 PF12725 DUF3810: Protein of u 28.5 1.6E+02 0.0035 26.7 6.0 47 10-56 82-147 (318)
139 PF09527 ATPase_gene1: Putativ 28.3 1.5E+02 0.0033 19.5 4.4 18 146-163 29-46 (55)
140 PF11947 DUF3464: Protein of u 28.2 2.3E+02 0.005 23.4 6.3 32 97-141 58-89 (153)
141 PF13720 Acetyltransf_11: Udp 28.1 43 0.00093 24.5 1.8 24 37-60 25-48 (83)
142 KOG4452 Predicted membrane pro 28.0 74 0.0016 23.3 2.9 16 182-197 53-68 (79)
143 PF13105 DUF3959: Protein of u 28.0 1.4E+02 0.0031 25.9 5.2 18 153-170 133-150 (239)
144 PF14235 DUF4337: Domain of un 27.5 1.7E+02 0.0038 24.0 5.5 35 124-159 119-153 (157)
145 PF07709 SRR: Seven Residue Re 27.1 43 0.00092 16.7 1.2 11 45-55 3-13 (14)
146 PF05814 DUF843: Baculovirus p 26.7 74 0.0016 23.9 2.8 17 42-58 63-79 (83)
147 PRK11412 putative uracil/xanth 25.9 5.8E+02 0.013 24.2 9.9 41 124-165 172-212 (433)
148 PF06181 DUF989: Protein of un 25.9 2.1E+02 0.0045 26.3 6.1 25 144-168 118-142 (300)
149 PF08876 DUF1836: Domain of un 25.7 57 0.0012 25.2 2.2 32 20-54 73-104 (105)
150 PF02868 Peptidase_M4_C: Therm 25.7 1.2E+02 0.0026 24.8 4.3 39 17-55 123-162 (164)
151 PF03861 ANTAR: ANTAR domain; 25.5 1.4E+02 0.003 19.8 3.9 35 24-64 12-46 (56)
152 PF06295 DUF1043: Protein of u 25.4 44 0.00094 26.4 1.6 18 152-169 2-19 (128)
153 COG1966 CstA Carbon starvation 25.3 2E+02 0.0043 28.7 6.2 41 124-167 168-208 (575)
154 PF04284 DUF441: Protein of un 25.2 1.7E+02 0.0036 24.0 4.9 49 123-171 78-126 (140)
155 COG0670 Integral membrane prot 24.9 3.2E+02 0.007 23.8 7.0 37 130-166 130-166 (233)
156 PF06305 DUF1049: Protein of u 24.8 77 0.0017 21.4 2.5 18 149-166 21-38 (68)
157 COG0177 Nth Predicted EndoIII- 24.6 90 0.0019 27.1 3.4 81 8-89 25-112 (211)
158 PF01578 Cytochrom_C_asm: Cyto 24.6 3.2E+02 0.0069 22.5 6.7 45 144-190 124-168 (214)
159 COG0730 Predicted permeases [G 24.5 3.2E+02 0.007 23.1 6.9 26 146-171 73-98 (258)
160 TIGR03580 EF_0832 conserved hy 24.5 85 0.0018 27.2 3.2 59 143-201 146-205 (233)
161 PF11744 ALMT: Aluminium activ 24.4 1.5E+02 0.0033 28.1 5.2 14 182-195 93-106 (406)
162 COG1593 DctQ TRAP-type C4-dica 24.1 3.3E+02 0.007 25.8 7.2 40 103-142 109-150 (379)
163 PRK14787 lipoprotein signal pe 24.1 1.1E+02 0.0023 25.0 3.7 14 134-147 74-87 (159)
164 PF11085 YqhR: Conserved membr 24.1 3.3E+02 0.0071 23.1 6.6 57 135-195 88-145 (173)
165 PRK08156 type III secretion sy 23.7 5E+02 0.011 24.3 8.4 24 93-116 21-44 (361)
166 PF04226 Transgly_assoc: Trans 23.7 1.6E+02 0.0034 19.4 3.8 16 182-197 28-44 (48)
167 PF06210 DUF1003: Protein of u 23.6 2.2E+02 0.0048 22.0 5.1 22 147-168 4-25 (108)
168 PRK12438 hypothetical protein; 23.6 3.8E+02 0.0083 28.5 8.3 45 126-170 263-307 (991)
169 PF09925 DUF2157: Predicted me 23.5 3.7E+02 0.0079 21.1 6.9 64 99-163 35-107 (145)
170 PF07784 DUF1622: Protein of u 23.5 3E+02 0.0064 20.0 6.8 43 140-193 23-65 (77)
171 PF10335 DUF294_C: Putative nu 23.4 84 0.0018 24.9 2.9 33 33-65 70-102 (145)
172 PF13906 AA_permease_C: C-term 23.3 2.4E+02 0.0052 18.9 4.8 34 125-162 8-42 (51)
173 cd03154 TM4SF3_like_LEL Tetras 23.3 1.7E+02 0.0037 20.9 4.3 29 24-55 12-40 (100)
174 COG1823 Predicted Na+/dicarbox 23.1 2.1E+02 0.0046 27.5 5.8 34 130-166 15-48 (458)
175 PF14159 CAAD: CAAD domains of 23.1 2.7E+02 0.0059 20.7 5.4 55 139-200 12-68 (90)
176 PRK10582 cytochrome o ubiquino 23.1 3.6E+02 0.0079 20.9 7.2 32 135-166 63-96 (109)
177 PF11833 DUF3353: Protein of u 23.1 4.1E+02 0.009 22.5 7.2 59 131-191 128-188 (194)
178 PF08566 Pam17: Mitochondrial 22.8 1.5E+02 0.0032 25.1 4.3 21 149-169 81-101 (173)
179 PF03699 UPF0182: Uncharacteri 22.8 3.7E+02 0.0081 27.8 7.9 77 93-169 196-294 (774)
180 PF11808 DUF3329: Domain of un 22.6 1.2E+02 0.0027 22.2 3.5 24 143-166 7-30 (90)
181 COG0109 CyoE Polyprenyltransfe 22.6 1.9E+02 0.0041 26.5 5.3 62 124-195 125-188 (304)
182 TIGR02359 thiW thiW protein. L 22.4 3.6E+02 0.0079 22.2 6.5 51 140-198 87-138 (160)
183 PF14188 DUF4311: Domain of un 22.4 98 0.0021 26.6 3.1 59 143-201 147-206 (213)
184 PF01890 CbiG_C: Cobalamin syn 22.2 78 0.0017 24.6 2.4 27 16-42 6-32 (121)
185 TIGR00844 c_cpa1 na(+)/h(+) an 22.0 3.5E+02 0.0077 28.1 7.5 7 145-151 38-44 (810)
186 PRK10720 uracil transporter; P 22.0 6.6E+02 0.014 23.6 9.0 43 123-166 156-198 (428)
187 cd03158 penumbra_like_LEL Tetr 21.9 1.9E+02 0.004 21.6 4.4 29 23-55 7-35 (119)
188 PF13829 DUF4191: Domain of un 21.8 1.6E+02 0.0035 25.8 4.5 33 134-166 15-49 (224)
189 TIGR00824 EIIA-man PTS system, 21.8 1.2E+02 0.0025 23.2 3.3 32 10-41 27-58 (116)
190 cd01067 globin_like superfamil 21.8 1.8E+02 0.0038 21.7 4.2 41 14-54 72-114 (117)
191 cd02435 CCC1 CCC1. CCC1: This 21.7 5.4E+02 0.012 22.4 14.1 17 37-53 94-110 (241)
192 PRK09776 putative diguanylate 21.6 2.4E+02 0.0051 28.7 6.3 7 118-124 42-48 (1092)
193 PRK10631 p-hydroxybenzoic acid 21.6 4.7E+02 0.01 26.4 8.2 71 120-197 376-447 (652)
194 PF11460 DUF3007: Protein of u 21.6 1E+02 0.0022 24.1 2.8 24 42-65 65-88 (104)
195 cd00006 PTS_IIA_man PTS_IIA, P 21.6 1.2E+02 0.0026 23.0 3.3 32 10-41 26-57 (122)
196 TIGR01185 devC DevC protein. T 21.6 2E+02 0.0043 26.4 5.3 22 145-166 309-330 (380)
197 PF13858 DUF4199: Protein of u 21.5 4E+02 0.0086 20.8 8.5 23 144-166 62-84 (163)
198 PF13520 AA_permease_2: Amino 21.4 2.8E+02 0.006 24.9 6.2 23 78-101 305-327 (426)
199 PF05251 UPF0197: Uncharacteri 21.4 2.1E+02 0.0045 21.1 4.3 27 126-152 23-55 (77)
200 PHA00024 IX minor coat protein 21.1 1.2E+02 0.0027 18.9 2.6 18 149-166 5-22 (33)
201 PF02674 Colicin_V: Colicin V 21.1 3.5E+02 0.0075 20.6 5.9 47 151-198 26-74 (146)
202 COG2921 Uncharacterized conser 21.1 1.3E+02 0.0027 23.0 3.2 41 11-55 16-80 (90)
203 TIGR00825 EIIBC-GUT PTS system 20.7 72 0.0016 29.4 2.1 43 151-199 193-235 (331)
204 cd03163 TM4SF8_like_LEL Tetras 20.1 2E+02 0.0043 20.7 4.1 28 24-55 9-36 (105)
No 1
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=100.00 E-value=1.3e-60 Score=402.20 Aligned_cols=182 Identities=41% Similarity=0.722 Sum_probs=175.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhhhccchhhhhhc------------cccCCChhHh
Q 028940 19 SPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEKINLKSRLKK------------QVEESPPWFK 86 (201)
Q Consensus 19 ~~~As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~Gki~v~~~ir~------------~~~~~p~w~~ 86 (201)
||||||||||+|||++++||++|++++++||+|||+|+|+|||+||+|||++++++|+ +.+++|+|+|
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~ 80 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQ 80 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHH
Confidence 6999999999999999999999999999999999999999999999999999999993 2356799999
Q ss_pred hhhccccCCChhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 028940 87 NLLNFVELPPKDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSVV 166 (201)
Q Consensus 87 ~~~~~~~~Ps~~~l~~~~~~~~~l~~~~l~~~~~~~~~lqlal~~~a~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~l 166 (201)
++.++|++|+++++.+++++|++|++|+++++++++|++||++|+++|+||||||++++|||+++++|+|++||++||++
T Consensus 81 ~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~~~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l 160 (194)
T PF11833_consen 81 RLLPSFDTPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGLGACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLL 160 (194)
T ss_pred hcccceeCCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcccHHHHHHHHHHHHHHHhhhcC
Q 028940 167 VPMIPTVLIHPTWTLELLTSLVAYFFLFLACTFF 200 (201)
Q Consensus 167 ~~~v~~~~l~~~~s~e~~~sl~~~v~Lw~~s~fL 200 (201)
++.+++..+++++|+|+++|++++++||++|+||
T Consensus 161 ~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~s~fL 194 (194)
T PF11833_consen 161 ASWLPVDIVPGPWSPEQLVSLFTYILLWLVSLFL 194 (194)
T ss_pred HhhcccccCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999888888889999999999999999999997
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.8e-13 Score=122.13 Aligned_cols=53 Identities=32% Similarity=0.343 Sum_probs=47.4
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhH
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTS 59 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~ 59 (201)
|+..|.|++|||+++||.||||+|||+|..+||||. +++.+|++|||.+...+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~e 61 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE 61 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHH
Confidence 567899999999999999999999999999999985 57889999999965443
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.2e-12 Score=115.51 Aligned_cols=56 Identities=29% Similarity=0.328 Sum_probs=48.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhhhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
...+|+|++|||+.+||+.|||+|||+|+.+||||+ +.+.+|++||+.+.. .-++|
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsD-pekRk 76 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSD-PEKRK 76 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcC-HHHHH
Confidence 457899999999999999999999999999999986 588999999999554 44444
No 4
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.28 E-value=5.5e-12 Score=85.69 Aligned_cols=48 Identities=29% Similarity=0.273 Sum_probs=43.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLM 57 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm 57 (201)
.|||++|||+++++.+||++||+++..+||||. +.+.+|++||+.|..
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999987 356799999999754
No 5
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.27 E-value=8.6e-12 Score=86.17 Aligned_cols=52 Identities=37% Similarity=0.477 Sum_probs=45.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHhhHhhh
Q 028940 11 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 11 dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
|||++|||+++++.+||+++|++++.+||||. +....|++||+.+....-|+
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 69999999999999999999999999999986 46679999999976555443
No 6
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.25 E-value=7.1e-12 Score=98.50 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=47.5
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH----hHHHHHHHHHHHHH
Q 028940 5 SRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLL 56 (201)
Q Consensus 5 p~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~Il 56 (201)
+.|+.+++|++|||+++||.|||+++||+|+.+||||. +..++|++|||.++
T Consensus 60 ~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 60 NPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 45777899999999999999999999999999999985 57889999999975
No 7
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.24 E-value=7.9e-12 Score=110.08 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=47.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------------hHHHHHHHHHHHHHhhH
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------------RSEESIEAAFEKLLMTS 59 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------------~~~~~Ie~AYD~Ilm~~ 59 (201)
++.+|+|++|||+++||.+|||+|||+|+++||||+ ++..+|++|||.|..+|
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~r 264 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQK 264 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 566899999999999999999999999999999997 36679999999987544
No 8
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.3e-11 Score=113.17 Aligned_cols=54 Identities=33% Similarity=0.300 Sum_probs=47.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSF 60 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l 60 (201)
|+..|+|++|||+++||.+|||+|||+|..+||||. +++.+|++|||.+....-
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~K 61 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHH
Confidence 456899999999999999999999999999999995 577899999999765433
No 9
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.22 E-value=1.1e-11 Score=82.63 Aligned_cols=46 Identities=35% Similarity=0.434 Sum_probs=41.9
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCHh--------HHHHHHHHHHHHH
Q 028940 11 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHER--------SEESIEAAFEKLL 56 (201)
Q Consensus 11 dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~~--------~~~~Ie~AYD~Il 56 (201)
|||++|||+++++.+||+++|+++.++||||.. .+.+|++||+.|.
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999874 4579999999863
No 10
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.21 E-value=1.4e-11 Score=114.77 Aligned_cols=54 Identities=19% Similarity=0.122 Sum_probs=48.2
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH----hHHHHHHHHHHHHHhhH
Q 028940 6 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTS 59 (201)
Q Consensus 6 ~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~Ilm~~ 59 (201)
++...|+|++|||+++||.+|||+|||+|..+||||+ +++.+|++|||.+....
T Consensus 24 ~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~ 81 (421)
T PTZ00037 24 EVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPE 81 (421)
T ss_pred cccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHH
Confidence 3567899999999999999999999999999999985 78899999999865543
No 11
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=2.1e-11 Score=111.57 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=44.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 58 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~ 58 (201)
..|+|++|||+++||.+|||+|||+|..+||||. +++++|++|||.+...
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~ 59 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDE 59 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccH
Confidence 4799999999999999999999999999999985 4677999999985543
No 12
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=2.4e-11 Score=107.77 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=48.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
|+..|+|++|||+++||.+|||+|||+|..+||||. +++++|++|||.+.....|
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr 62 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKR 62 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHH
Confidence 456899999999999999999999999999999986 4677999999997655433
No 13
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=3e-11 Score=110.64 Aligned_cols=55 Identities=25% Similarity=0.255 Sum_probs=47.6
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
|+..|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.+....-|
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR 63 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKR 63 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHH
Confidence 456899999999999999999999999999999986 4677999999986554333
No 14
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=3.3e-11 Score=110.50 Aligned_cols=55 Identities=27% Similarity=0.335 Sum_probs=48.5
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
|..+|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.+.....|
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR 62 (380)
T PRK14276 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKR 62 (380)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhh
Confidence 456899999999999999999999999999999994 5788999999997665533
No 15
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=3.2e-11 Score=110.35 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=47.5
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
|+..|+|++|||+++||.+|||+|||+|..+||||. +++++|++|||.+.....|
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR 62 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKK 62 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHH
Confidence 456799999999999999999999999999999995 4678999999986554433
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=3.7e-11 Score=109.76 Aligned_cols=53 Identities=26% Similarity=0.314 Sum_probs=46.5
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHhhH
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTS 59 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm~~ 59 (201)
|...|+|++|||+++||.+|||+|||+|..+||||. +++++|++|||.+....
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~ 62 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQ 62 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChh
Confidence 456899999999999999999999999999999986 35678999999865543
No 17
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=3.6e-11 Score=110.80 Aligned_cols=57 Identities=26% Similarity=0.205 Sum_probs=48.6
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhh
Q 028940 5 SRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 5 p~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
-+.+..|+|++|||+++||.+|||+|||+|+.+||||+ +++.+|++|||.+....-|
T Consensus 4 ~~~~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR 68 (392)
T PRK14279 4 REWVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68 (392)
T ss_pred hhhcccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhh
Confidence 34456899999999999999999999999999999986 4567999999996654433
No 18
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=5.8e-11 Score=108.81 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=46.6
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMT 58 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~ 58 (201)
|...|+|++|||+++||.+||++|||+|+.+||||. +++.+|++|||.+...
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~ 60 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDD 60 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchh
Confidence 457899999999999999999999999999999996 4778999999986543
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=5.7e-11 Score=108.85 Aligned_cols=55 Identities=29% Similarity=0.298 Sum_probs=47.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
|+..|+|++|||+++||.+|||+|||+|..+||||. +++++|++|||.+.....|
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr 62 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKR 62 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHH
Confidence 455899999999999999999999999999999994 5778999999987544433
No 20
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=6.4e-11 Score=108.12 Aligned_cols=55 Identities=31% Similarity=0.325 Sum_probs=47.6
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
|+..|+|++|||+++||.+|||+|||+|..+||||. +++.+|++|||.+.....|
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 63 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKR 63 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhh
Confidence 456899999999999999999999999999999996 3567999999987654443
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=7e-11 Score=108.81 Aligned_cols=51 Identities=27% Similarity=0.270 Sum_probs=46.0
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhh
Q 028940 8 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 58 (201)
Q Consensus 8 ~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~ 58 (201)
...|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.+...
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 65 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE 65 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCch
Confidence 46899999999999999999999999999999985 4677999999996654
No 22
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=7.7e-11 Score=101.33 Aligned_cols=51 Identities=33% Similarity=0.425 Sum_probs=45.4
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLM 57 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm 57 (201)
....||||+||++|+||+.|||+|||+|..+||||+ +..++|++||.++-.
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD 154 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTD 154 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcc
Confidence 346799999999999999999999999999999987 466899999999643
No 23
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=8.3e-11 Score=107.46 Aligned_cols=51 Identities=25% Similarity=0.265 Sum_probs=45.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhH
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTS 59 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~ 59 (201)
..|+|++|||+++||.+|||+|||+|+.+||||+ +++.+|++|||.+..+.
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 60 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDN 60 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 4799999999999999999999999999999987 35789999999866543
No 24
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=1e-10 Score=106.78 Aligned_cols=57 Identities=30% Similarity=0.235 Sum_probs=48.9
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhhhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
|...|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.|....-|+.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~ 65 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 456899999999999999999999999999999986 466799999999765544433
No 25
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.1e-10 Score=107.34 Aligned_cols=55 Identities=29% Similarity=0.286 Sum_probs=47.4
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhhh
Q 028940 8 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 8 ~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
...|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.+.....|+
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 65 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35799999999999999999999999999999985 36789999999866544433
No 26
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.2e-10 Score=106.63 Aligned_cols=52 Identities=31% Similarity=0.303 Sum_probs=46.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 58 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~ 58 (201)
|+..|+|++|||+++||.+||++|||+|..+||||+ +++++|++|||.+...
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcch
Confidence 356899999999999999999999999999999986 3677999999986544
No 27
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.1e-10 Score=107.00 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=46.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSF 60 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l 60 (201)
|...|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.+.....
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~ 62 (380)
T PRK14297 1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQK 62 (380)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhh
Confidence 345799999999999999999999999999999985 456799999998665433
No 28
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.5e-10 Score=106.03 Aligned_cols=54 Identities=28% Similarity=0.293 Sum_probs=47.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
.+|+|++|||+++||.+||++|||++..+||||. +++++|++|||.+.....|.
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~ 62 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA 62 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhh
Confidence 3799999999999999999999999999999994 57789999999876554443
No 29
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=1.4e-10 Score=106.38 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=45.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMT 58 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~ 58 (201)
..|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.+...
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 60 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDA 60 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcch
Confidence 5799999999999999999999999999999986 4678999999985443
No 30
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.08 E-value=1.7e-10 Score=102.90 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=45.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLM 57 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm 57 (201)
|+..|+|++|||+++||.+|||+|||+|+.+||||. +++++|++|||.+..
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~ 58 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSD 58 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhh
Confidence 445899999999999999999999999999999994 467899999998654
No 31
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=1.7e-10 Score=105.91 Aligned_cols=50 Identities=28% Similarity=0.249 Sum_probs=44.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMT 58 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~ 58 (201)
..|+|++|||+++||.+|||+|||+|..+||||. +++.+|++|||.+...
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~ 58 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDP 58 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchh
Confidence 3799999999999999999999999999999986 3667899999986443
No 32
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=2.2e-10 Score=105.21 Aligned_cols=51 Identities=27% Similarity=0.276 Sum_probs=45.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhH
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTS 59 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~ 59 (201)
.+|+|++|||+++||.+|||+|||+|..+||||. +++++|++|||.+....
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~ 59 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPE 59 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHH
Confidence 4799999999999999999999999999999994 57789999999865543
No 33
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=2.7e-10 Score=105.20 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=45.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSF 60 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l 60 (201)
..|+|++|||+++||.+|||+|||+|..+||||. +++++|++|||.+.....
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~ 61 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDK 61 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhh
Confidence 4799999999999999999999999999999985 466899999999655443
No 34
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=2.8e-10 Score=104.46 Aligned_cols=53 Identities=23% Similarity=0.206 Sum_probs=47.4
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhH
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTS 59 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~ 59 (201)
|+..|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.+....
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~ 62 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPD 62 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHH
Confidence 456899999999999999999999999999999986 46779999999977653
No 35
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=3.8e-10 Score=103.91 Aligned_cols=49 Identities=31% Similarity=0.332 Sum_probs=44.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 58 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~ 58 (201)
.|+|++|||+++||.+|||+|||+|..+||||. +++.+|++||+.+...
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 57 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDA 57 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCH
Confidence 489999999999999999999999999999985 4678999999997654
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.00 E-value=5.2e-10 Score=101.40 Aligned_cols=48 Identities=35% Similarity=0.385 Sum_probs=43.3
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhh
Q 028940 11 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMT 58 (201)
Q Consensus 11 dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~ 58 (201)
|+|++|||+++||.+|||+||++|..+||||. +++++|++|||.+...
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 55 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDP 55 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhCh
Confidence 78999999999999999999999999999986 4678999999985544
No 37
>PHA03102 Small T antigen; Reviewed
Probab=98.97 E-value=5.2e-10 Score=91.71 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=48.9
Q ss_pred CCCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCH----hHHHHHHHHHHHHHhhHhhhh
Q 028940 8 KVWDPYKRLGISPYA--SEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 8 ~~~dpY~~LGv~~~A--s~eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
+.+..|++|||+++| |.+|||+|||++..+||||+ +++++||+||+.|.....+.+
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 456789999999999 99999999999999999986 688999999999876555555
No 38
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=8.1e-10 Score=98.47 Aligned_cols=56 Identities=30% Similarity=0.324 Sum_probs=48.1
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhhhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
+..+|||++|||+++|+..|||.||++|.++||||. +++.+|.+|||.+ ++..+++
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiL-sd~eKR~ 102 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEIL-SDEEKRQ 102 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHh-cCHHHHH
Confidence 344599999999999999999999999999999996 5788999999985 4555544
No 39
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=6.9e-10 Score=101.29 Aligned_cols=49 Identities=29% Similarity=0.279 Sum_probs=43.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHhh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMT 58 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm~ 58 (201)
.|+|++|||+++||.+||++|||+|..+||||. +++++|++|||.+...
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP 60 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcCh
Confidence 699999999999999999999999999999986 3557899999995543
No 40
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=7.3e-10 Score=101.17 Aligned_cols=49 Identities=29% Similarity=0.299 Sum_probs=43.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMT 58 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~ 58 (201)
.|+|++|||+++||.+||++||++|.++||||. +++.+|++|||.+...
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~ 57 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDA 57 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcch
Confidence 489999999999999999999999999999985 4667999999986543
No 41
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=1e-09 Score=100.48 Aligned_cols=53 Identities=26% Similarity=0.275 Sum_probs=46.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
..|+|++|||+++||.+||++|||+|..+||||. +++++|++||+.+..+.-|
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R 61 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETR 61 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHH
Confidence 3699999999999999999999999999999995 5778999999986654433
No 42
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.1e-09 Score=99.62 Aligned_cols=50 Identities=36% Similarity=0.353 Sum_probs=46.2
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-----hHHHHHHHHHHHHHh
Q 028940 8 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----RSEESIEAAFEKLLM 57 (201)
Q Consensus 8 ~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-----~~~~~Ie~AYD~Ilm 57 (201)
....-|.+|||+++||.+|||+|||+|..+||||+ +++.+|.+|||.+..
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd 56 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSD 56 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999999997 799999999999765
No 43
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.2e-09 Score=84.74 Aligned_cols=57 Identities=30% Similarity=0.315 Sum_probs=49.1
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHhhHhhhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
....|+|++|||+++||.+||++||+++..+||||. +++.+|++||+.+.....+..
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~ 68 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAE 68 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 356789999999999999999999999999999975 567899999999766555544
No 44
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=8.3e-09 Score=96.83 Aligned_cols=55 Identities=29% Similarity=0.270 Sum_probs=48.5
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHhhHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
....+.|++|||+.+||.+||+++||+|..|||||+ ++++.|++|||.+-..+-|
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR 68 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQER 68 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhh
Confidence 345689999999999999999999999999999997 5788999999998665544
No 45
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.65 E-value=3.2e-08 Score=99.89 Aligned_cols=55 Identities=22% Similarity=0.113 Sum_probs=48.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhhhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
+.|+|++|||+++||.+|||+||++|..+||||+ +++.+|+.||+.+.....|++
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~ 633 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKM 633 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4689999999999999999999999999999995 567899999999776666654
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.65 E-value=3.3e-08 Score=97.75 Aligned_cols=53 Identities=28% Similarity=0.234 Sum_probs=46.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhhh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
+|+|++|||+++|+.+|||+|||+|.++||||+ +++.+|+.||+.+.....|.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa 61 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA 61 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHH
Confidence 699999999999999999999999999999997 35778999999976554443
No 47
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=6.6e-08 Score=84.35 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=50.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCHh----------HHHHHHHHHHHHHhhHhhhh---hhhccc
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER----------SEESIEAAFEKLLMTSFRRR---KKEKIN 69 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~~----------~~~~Ie~AYD~Ilm~~l~~R---~~Gki~ 69 (201)
.+..|||++|||.++||..||++||++|..+||||.. ++.+++.||..+-.+ -+++ +.|+|.
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDe-ekR~~YDetG~id 85 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDE-EKRAVYDETGSID 85 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHH-HHHHHHhccCCCC
Confidence 3456999999999999999999999999999999963 778999999885433 3333 478775
No 48
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.6e-08 Score=86.79 Aligned_cols=55 Identities=27% Similarity=0.216 Sum_probs=50.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhhhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
..|+|.+|||+++|+..||++||+.+..+||||+ +++.++..||+.+....+|.+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~ 66 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAA 66 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6799999999999999999999999999999986 577899999999988888877
No 49
>PHA02624 large T antigen; Provisional
Probab=98.55 E-value=4.9e-08 Score=94.92 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=50.8
Q ss_pred CCCCCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCH----hHHHHHHHHHHHHHhhHhhhhh
Q 028940 6 RIKVWDPYKRLGISPYA--SEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFRRRK 64 (201)
Q Consensus 6 ~~~~~dpY~~LGv~~~A--s~eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~Ilm~~l~~R~ 64 (201)
+.+.++.|++|||+++| |.+|||+|||++..+||||+ +++++|+.||+.+...--+.|.
T Consensus 7 ree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 7 REESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred hHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 45567899999999999 99999999999999999985 7899999999997655555553
No 50
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.3e-08 Score=84.70 Aligned_cols=54 Identities=24% Similarity=0.311 Sum_probs=46.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhhhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
..|-|.+||+.++|+.||||+|||+|+++||||. +++.+||.||.. +.+.-++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~I-LsD~~kR~ 91 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAI-LSDPTKRN 91 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHH-hcChhhhh
Confidence 3578999999999999999999999999999875 688999999976 66665555
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.48 E-value=2.3e-07 Score=77.04 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=43.9
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCH-------------hHHHHHHHHHHHHHhhHhhhh
Q 028940 10 WDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHE-------------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 10 ~dpY~~LGv~~~--As~eeIk~A~~~l~~~~~~D~-------------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
.|+|++|||+++ ++.++|+++|+++.++||||. +....||.||+.+...-.|.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~ 69 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAE 69 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHH
Confidence 489999999996 788999999999999999996 133579999999655444433
No 52
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.9e-07 Score=88.05 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=47.1
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-----------hHHHHHHHHHHHHHhhHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-----------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
.++.|-|..|+|++|||.|||++|||++.+-||||+ +.+.+|..|||.+...+-|
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kR 71 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKR 71 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 345589999999999999999999999999999986 3567999999998765544
No 53
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.44 E-value=1.6e-07 Score=88.52 Aligned_cols=54 Identities=26% Similarity=0.366 Sum_probs=45.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------------hHHHHHHHHHHHHHhhHhh
Q 028940 8 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 8 ~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
...||||+|||+.++|.+|||++||+|.-+||||+ ++-.+|++||..+-.+.-|
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~r 162 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRR 162 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 35799999999999999999999999999999997 3446899999986555433
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.33 E-value=1e-06 Score=73.57 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=44.4
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCHh-------------HHHHHHHHHHHHHhhHhhhh
Q 028940 9 VWDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 9 ~~dpY~~LGv~~~--As~eeIk~A~~~l~~~~~~D~~-------------~~~~Ie~AYD~Ilm~~l~~R 63 (201)
..|+|++|||++. ++.++|+++|+++.++||||.- ....||.||+.+...-.|.+
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~ 74 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRAR 74 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHH
Confidence 4799999999995 6789999999999999999951 12699999999654443433
No 55
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.31 E-value=1e-06 Score=72.98 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=42.8
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCHh-----------HHHHHHHHHHHHHhhHhh
Q 028940 10 WDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-----------SEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 10 ~dpY~~LGv~~~--As~eeIk~A~~~l~~~~~~D~~-----------~~~~Ie~AYD~Ilm~~l~ 61 (201)
.|+|++||++++ +|.++|+++|+++..+||||+. ....||.||+.+. +.++
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~-dp~~ 65 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLK-DALK 65 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhC-CHHH
Confidence 589999999997 8899999999999999999962 1359999999854 4443
No 56
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.27 E-value=1.8e-06 Score=72.07 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=45.7
Q ss_pred CCCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCH-------------hHHHHHHHHHHHHHhhHhh
Q 028940 7 IKVWDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHE-------------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~--As~eeIk~A~~~l~~~~~~D~-------------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
|...|+|++||+++. .+.++|+++|+++.++||||. +....||.||+.+.....|
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~R 70 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRR 70 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence 567899999999999 557999999999999999996 1346999999995544333
No 57
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.5e-06 Score=81.81 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=48.7
Q ss_pred CCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHh
Q 028940 3 TFSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLM 57 (201)
Q Consensus 3 ~fp~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm 57 (201)
+++..+..|||.+|||.+|.|.++||+.||++..--|||+ +..+.+..|||.|..
T Consensus 228 l~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~ 289 (490)
T KOG0720|consen 228 LSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGD 289 (490)
T ss_pred hhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcc
Confidence 4666778999999999999999999999999999999997 566788899998753
No 58
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.02 E-value=5e-06 Score=76.93 Aligned_cols=56 Identities=30% Similarity=0.302 Sum_probs=47.5
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-----------hHHHHHHHHHHHHHhhHhhhhh
Q 028940 8 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----------RSEESIEAAFEKLLMTSFRRRK 64 (201)
Q Consensus 8 ~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-----------~~~~~Ie~AYD~Ilm~~l~~R~ 64 (201)
.-.|.|++|||.++||--||-+|||++.+++|||. +++..|-+|-+. +.+.-++||
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEV-Lsd~EkRrq 458 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEV-LSDPEKRRQ 458 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHh-hcCHHHHhh
Confidence 45799999999999999999999999999999974 345578889888 566666676
No 59
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=7.2e-06 Score=63.84 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=49.8
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH----hHHHHHHHHHHHHHhhH
Q 028940 5 SRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTS 59 (201)
Q Consensus 5 p~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~Ilm~~ 59 (201)
|+|+....-.+|||+|.++.+-||+|+||.+-..|||. --..+||+|+|.+-..+
T Consensus 51 ~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 51 PKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGTS 109 (112)
T ss_pred cccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999986 57789999999865443
No 60
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.5e-06 Score=74.79 Aligned_cols=48 Identities=23% Similarity=0.202 Sum_probs=41.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHH
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLL 56 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Il 56 (201)
.+|=|++|||+++|+-.||.+|||.|.++||||. +.+..|-.||+.+-
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilk 86 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILK 86 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhccccccc
Confidence 4688999999999999999999999999999985 35567778887744
No 61
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.5e-05 Score=70.10 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=47.5
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhhh
Q 028940 11 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 11 dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
.-|.+|||.++||.|||+.||-.|+++||||. +.+.+|++||.+++.+.+.+
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999974 67789999999999988765
No 62
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.7e-05 Score=66.97 Aligned_cols=34 Identities=38% Similarity=0.349 Sum_probs=32.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE 42 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~ 42 (201)
..|.|++|||.++|+.+||++||+++..+||||+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk 35 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDK 35 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCC
Confidence 4789999999999999999999999999999997
No 63
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=6.9e-05 Score=70.42 Aligned_cols=56 Identities=29% Similarity=0.154 Sum_probs=46.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHhhHhhhhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRRRK 64 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm~~l~~R~ 64 (201)
-.|.|++|||+.+||.+||++||+++...||||. .++.+|-+||..+-..--+.|+
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 4689999999999999999999999999999986 3566888999876544444444
No 64
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00015 Score=74.54 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=48.9
Q ss_pred CCCCCCCCCcccccCCCC----CCCHHHHHHHHHHHHHHhCCCH-----hHHHHHHHHHHHHHhhHhh
Q 028940 3 TFSRIKVWDPYKRLGISP----YASEEEIWGSRNFLLEQYTGHE-----RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 3 ~fp~~~~~dpY~~LGv~~----~As~eeIk~A~~~l~~~~~~D~-----~~~~~Ie~AYD~Ilm~~l~ 61 (201)
..|.|+++++||+|.|+- ....+.||++|++|..+||||+ +.++++|+|||.+-.+..+
T Consensus 1274 KP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ta~ 1341 (2235)
T KOG1789|consen 1274 KPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSSETAN 1341 (2235)
T ss_pred CCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999999874 3444789999999999999997 6889999999997644433
No 65
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=97.43 E-value=0.00029 Score=58.79 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=44.5
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCH-------------hHHHHHHHHHHHHHhhHhhhh
Q 028940 10 WDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHE-------------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 10 ~dpY~~LGv~~~--As~eeIk~A~~~l~~~~~~D~-------------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
.|+|+++|+++. .+..++++.|+++.+++|||. +.-..||.||.++ .+.+++-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tL-kdPl~RA 69 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQIL-KDPILRA 69 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHH-CChHHHH
Confidence 589999999998 999999999999999999996 2346999999995 4555433
No 66
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00027 Score=60.96 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=48.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHhhHhhhhh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRRRK 64 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm~~l~~R~ 64 (201)
-|||++|.|.|+.+.|+|++-||.|.---|||+ ..+..+..||..+..+..++|-
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 379999999999999999999999999999986 3566888999888888888775
No 67
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.19 E-value=0.00064 Score=47.08 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=43.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~ 61 (201)
|+.+++|+.|||+++.+.|+|-.+|+..+. .|+.......+|...|-+.|=.
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~---~~P~~~~~~r~AL~~Ia~~R~S 53 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN---DDPSQKDTLREALRVIAESRNS 53 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH---cChHhHHHHHHHHHHHHHHcCC
Confidence 677899999999999999999999998887 6667777788888888765533
No 68
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=96.56 E-value=0.0041 Score=50.99 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCH-------------hHHHHHHHHHHHHHhh
Q 028940 22 ASEEEIWGSRNFLLEQYTGHE-------------RSEESIEAAFEKLLMT 58 (201)
Q Consensus 22 As~eeIk~A~~~l~~~~~~D~-------------~~~~~Ie~AYD~Ilm~ 58 (201)
-+.++|+++|+++..+||||. +..+.||.||+.+...
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p 52 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDP 52 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCCh
Confidence 467899999999999999994 2457999999995543
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0043 Score=51.35 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=31.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE 42 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~ 42 (201)
.|+|++||+.+.++.++|+++|+.++.++|+|.
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~ 145 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDK 145 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHH
Confidence 689999999999999999999999999999986
No 70
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.09 E-value=0.007 Score=48.44 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=40.8
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH----hHHHHHHHHHHHHHhhHhhhh
Q 028940 6 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 6 ~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
.|+.+...++|+|+++.+-|||++.|++|....+|++ -...+|..|.|.|. +.++.+
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~-~El~~~ 114 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLE-QELKEE 114 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHH-HHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHH-HHHHHH
Confidence 4777889999999999999999999999999988753 56689999999955 444443
No 71
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.053 Score=49.08 Aligned_cols=56 Identities=23% Similarity=0.122 Sum_probs=47.0
Q ss_pred CCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCHh----------HHHHHHHHHHHHHhhHhhhhhh
Q 028940 9 VWDPYKRLGISP---YASEEEIWGSRNFLLEQYTGHER----------SEESIEAAFEKLLMTSFRRRKK 65 (201)
Q Consensus 9 ~~dpY~~LGv~~---~As~eeIk~A~~~l~~~~~~D~~----------~~~~Ie~AYD~Ilm~~l~~R~~ 65 (201)
-.|.|..||++. -|..+.|.+|.+..+-+||||.. .+.-|+.|||. +-++-+++|-
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~ev-L~D~~~R~qy 110 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREV-LGDRKLRLQY 110 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHH-hccHHHHhhc
Confidence 368999999986 58899999999999999999974 55789999998 5666666664
No 72
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=90.49 E-value=9.7 Score=32.08 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhH
Q 028940 27 IWGSRNFLLEQYTGHERSEESIEAAFEKLLMTS 59 (201)
Q Consensus 27 Ik~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~ 59 (201)
+.+..+.|.+.--+|++..+-+++..|.|+..+
T Consensus 10 ~~~l~~~L~~~~~~e~~~e~~L~eil~~LleaQ 42 (206)
T PF06570_consen 10 IFDLRKYLRSSGVSEEEIEELLEEILPHLLEAQ 42 (206)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 455566664444456666667777777766443
No 73
>PRK07668 hypothetical protein; Validated
Probab=87.22 E-value=21 Score=31.76 Aligned_cols=135 Identities=15% Similarity=0.204 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhhhccchhhhhhccccCCC-hhHhhhhccccCCC-hhHHHHHH
Q 028940 27 IWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEKINLKSRLKKQVEESP-PWFKNLLNFVELPP-KDVIFRRL 104 (201)
Q Consensus 27 Ik~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~Gki~v~~~ir~~~~~~p-~w~~~~~~~~~~Ps-~~~l~~~~ 104 (201)
+.+..+.|..+.-+|++..+-+++.-|.++. .-++||- +. .--+.+| .|.+.+....+.+. ..-.....
T Consensus 10 l~~L~~yL~~~glseeeieeiL~Ei~~hLlE----gQk~GkT-A~----~IfG~sPk~yA~EL~~~~~~~~~~~~~~l~~ 80 (254)
T PRK07668 10 LDDTRVYLIAKGIKEEDIESFLEDAELHLIE----GEKDGKT-VE----DIFGDSPKEYANELVKEMEVDRKENIKLILF 80 (254)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH----HHHcCCc-HH----HHhCCCHHHHHHHHhcccCCCcchHHHHHHH
Confidence 3444455544445666666667776666553 3345552 11 1111123 24555554333333 33334566
Q ss_pred HHHHHHHHHHH---hhcCCCCc-----------hHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHHhhh
Q 028940 105 FLFAFMGGWSI---MNSAEGGP-----------AFQVAVSLAACIYFLNEK-----TKSLARASIIGLGALASGWILGSV 165 (201)
Q Consensus 105 ~~~~~l~~~~l---~~~~~~~~-----------~lqlal~~~a~iyfl~~k-----~~~lgra~ll~~g~L~~G~~~Gs~ 165 (201)
++-+.++.|++ ++++.+++ ++-+.++....++.+++- .++-.+......+....+++++..
T Consensus 81 ~ii~~l~~~~i~~~~f~~~~~~~~~s~~~iig~~~~~~l~i~~~~~~~r~~~fk~~~~~~~~i~~~~~~~~p~~l~i~i~ 160 (254)
T PRK07668 81 IIIGILSFWIIANILFGNPNHPLTYSLIQLIGYPISLILTIIGLIFLLRMASFKSKLTEKWFLIIYLVILIPMLLIVAIM 160 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeeeehHHhhHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888876 32332222 234444444444544432 344445555556666667777776
Q ss_pred hcccc
Q 028940 166 VVPMI 170 (201)
Q Consensus 166 l~~~v 170 (201)
+.+-.
T Consensus 161 ~l~k~ 165 (254)
T PRK07668 161 FLNKW 165 (254)
T ss_pred HHHhh
Confidence 65543
No 74
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=81.87 E-value=4.1 Score=30.24 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=34.8
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHh----CCCHhHHHHHHHHHHHHH
Q 028940 13 YKRLGISPYASEEEIWGSRNFLLEQY----TGHERSEESIEAAFEKLL 56 (201)
Q Consensus 13 Y~~LGv~~~As~eeIk~A~~~l~~~~----~~D~~~~~~Ie~AYD~Il 56 (201)
-+..|..|-|+.+||+.|-.+-+++. ||.+...+..|+|.|.|-
T Consensus 6 k~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~ia 53 (88)
T COG5552 6 KELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIA 53 (88)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH
Confidence 35678999999999999988888875 566677777888877763
No 75
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=73.10 E-value=18 Score=26.85 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=43.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccc-ccccCCCcccHHHHHHHHHHHHHHHhhhc
Q 028940 138 LNEKTKSLARASIIGLGALASGWILGSVVVPMI-PTVLIHPTWTLELLTSLVAYFFLFLACTF 199 (201)
Q Consensus 138 l~~k~~~lgra~ll~~g~L~~G~~~Gs~l~~~v-~~~~l~~~~s~e~~~sl~~~v~Lw~~s~f 199 (201)
|.|+.+++++.+...+...-.|.++-+...+-+ .....+++.|.-.+.++.-+++-|+.+-.
T Consensus 10 L~r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~ 72 (91)
T PF04341_consen 10 LVRRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWL 72 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888877778877777776433 22223235677888888888888887643
No 76
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=71.34 E-value=55 Score=26.70 Aligned_cols=44 Identities=11% Similarity=-0.050 Sum_probs=26.9
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHhh
Q 028940 121 GGPAFQVAVSLAACIYFLNEKTKSLA--RASIIGLGALASGWILGS 164 (201)
Q Consensus 121 ~~~~lqlal~~~a~iyfl~~k~~~lg--ra~ll~~g~L~~G~~~Gs 164 (201)
++..+.++.-++.+++++.+...+.. .-+...++++++|.+...
T Consensus 124 ~~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~~ 169 (193)
T PF06738_consen 124 SWIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLAAL 169 (193)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 46777777777888888888755543 334444455555444443
No 77
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=68.95 E-value=9.9 Score=33.04 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=43.1
Q ss_pred CCCCCCCCCCcccccCCCCCCCHHHHHH--HHHHHHHHhCC----------CH-hHHHHHHHHHHHHHhhHhhhhhhhc
Q 028940 2 PTFSRIKVWDPYKRLGISPYASEEEIWG--SRNFLLEQYTG----------HE-RSEESIEAAFEKLLMTSFRRRKKEK 67 (201)
Q Consensus 2 ~~fp~~~~~dpY~~LGv~~~As~eeIk~--A~~~l~~~~~~----------D~-~~~~~Ie~AYD~Ilm~~l~~R~~Gk 67 (201)
-+||+-...--=-.=||+.|+|.||++. |-..+...+-| .+ -..++=-.||..+-++|...|..|.
T Consensus 122 vlFPrk~~k~kkG~~gip~Dss~ee~~~~~a~~q~~g~vmPi~~~~~~~~~r~it~eek~~~Ay~tLR~aR~~ar~~G~ 200 (212)
T PTZ00352 122 VLFPRKGKKPKKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGK 200 (212)
T ss_pred eeecCCCCccccCCCCCCCCCCHHHHHHHHHHHhhcCceecccccccccccccCCHHHHHhhHHHHHHHHHHHHHHhhH
Confidence 3688754432223458999999999998 65433212111 11 1223445899999999999999986
No 78
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=68.87 E-value=43 Score=33.92 Aligned_cols=97 Identities=12% Similarity=0.026 Sum_probs=50.8
Q ss_pred cCCChhHhhhhccc------cCCChhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 028940 79 EESPPWFKNLLNFV------ELPPKDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIG 152 (201)
Q Consensus 79 ~~~p~w~~~~~~~~------~~Ps~~~l~~~~~~~~~l~~~~l~~~~~~~~~lqlal~~~a~iyfl~~k~~~lgra~ll~ 152 (201)
++.|+=+++++..| ..|+..+...+..+=+.|.+.+.+.-. -|-.-++ .+.+|+..|...---|+-.+
T Consensus 5 ~~~p~~~~~~~~~~~~~~~~~~P~r~~~~~r~~~a~~L~l~i~~~l~--~P~~a~a---~~~vfivsqp~~g~t~~kai- 78 (683)
T PRK11427 5 NSLPLPVVRLLAFFHEELSERRPGRVPQTLQLWVGCLLVILISMTFE--IPFLALS---LAVLFYGIQSNAFYTKFVAI- 78 (683)
T ss_pred ccCChhHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHcC--CCHHHHH---HHHHHheeccchHHHHHHHH-
Confidence 34455444554433 358888888887775555444444222 2343344 56789999886555444444
Q ss_pred HHHHHHHHHHhhhhccccccccCCCcccHHHHHH
Q 028940 153 LGALASGWILGSVVVPMIPTVLIHPTWTLELLTS 186 (201)
Q Consensus 153 ~g~L~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~s 186 (201)
+.++|.++|..++-++.+..++ .|+..+.
T Consensus 79 --~r~vgt~lg~~~~vll~~~~v~---~P~l~~l 107 (683)
T PRK11427 79 --LFVVATVLEIGSLFLIYKWSYG---YPLIRLI 107 (683)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcc---chHHHHH
Confidence 2345555555553333333333 3455443
No 79
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=68.84 E-value=20 Score=31.81 Aligned_cols=68 Identities=16% Similarity=0.320 Sum_probs=42.3
Q ss_pred HHHHHHHhhHhhhhhh--hccchhhhhhccc---cCCChhHhhhhccccCCChhHHHHHHHHHHHHHHHHHhhcC
Q 028940 50 AAFEKLLMTSFRRRKK--EKINLKSRLKKQV---EESPPWFKNLLNFVELPPKDVIFRRLFLFAFMGGWSIMNSA 119 (201)
Q Consensus 50 ~AYD~Ilm~~l~~R~~--Gki~v~~~ir~~~---~~~p~w~~~~~~~~~~Ps~~~l~~~~~~~~~l~~~~l~~~~ 119 (201)
--||.++...-++|+- ..=..+.+-. ++ ....||. .++.||..|..+.+-=|++..|+++++.+-...
T Consensus 112 ~DWd~vIdaEv~rRK~LE~nPe~s~n~e-pv~FdtSiiPWW-aW~~rf~l~~aE~lNGR~AMiGFvaal~~E~~T 184 (250)
T PLN00014 112 TDWDAVIDAEVVRRKWLEDNPETSSNDE-PVLFDTSIIPWW-AWVKRFHLPEAELLNGRAAMVGFFMAYLVDSLT 184 (250)
T ss_pred cchHHHHHHHHHHHHHHhhCccccCCCC-CceeecccccHH-HHHHhccCchhHhhhhHHHHHHHHHHHHHHHHc
Confidence 3477777777777762 1110111111 11 2335776 577899999999888899888888777664433
No 80
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=68.42 E-value=9.8 Score=28.15 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=20.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCC
Q 028940 16 LGISPYASEEEIWGSRNFLLEQYTG 40 (201)
Q Consensus 16 LGv~~~As~eeIk~A~~~l~~~~~~ 40 (201)
-|..|-|++|||+.|-.+-+++-.|
T Consensus 9 ~~fePpaT~~EI~aAAlQyVRKvSG 33 (78)
T PF10041_consen 9 RNFEPPATDEEIRAAALQYVRKVSG 33 (78)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHcc
Confidence 3678899999999998887887654
No 81
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=62.83 E-value=13 Score=29.68 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=19.6
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHhhhhhH
Q 028940 90 NFVELPPKDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKS 144 (201)
Q Consensus 90 ~~~~~Ps~~~l~~~~~~~~~l~~~~l~~~~~~~~~lqlal~~~a~iyfl~~k~~~ 144 (201)
.+|..|. +.+++||+|++.+.. .....|+++|+.||
T Consensus 59 h~fs~~~-----i~~Ii~gv~aGvIg~--------------Illi~y~irR~~Kk 94 (122)
T PF01102_consen 59 HRFSEPA-----IIGIIFGVMAGVIGI--------------ILLISYCIRRLRKK 94 (122)
T ss_dssp SSSS-TC-----HHHHHHHHHHHHHHH--------------HHHHHHHHHHHS--
T ss_pred cCccccc-----eeehhHHHHHHHHHH--------------HHHHHHHHHHHhcc
Confidence 3555553 467788888776554 12445666666555
No 82
>PRK11056 hypothetical protein; Provisional
Probab=61.13 E-value=72 Score=25.48 Aligned_cols=80 Identities=10% Similarity=0.110 Sum_probs=45.3
Q ss_pred HHHhhcCCCCchHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHH-
Q 028940 113 WSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSL---ARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLV- 188 (201)
Q Consensus 113 ~~l~~~~~~~~~lqlal~~~a~iyfl~~k~~~l---gra~ll~~g~L~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~- 188 (201)
++.++.+.-.=++-=.+++...+|.|+|+-.+- .-.-.++.+|+++|.+..|.++-.=-|..=+ +-+-++.
T Consensus 26 fs~Lf~s~VpFSiFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraeyPeiGS-----NF~p~il~ 100 (120)
T PRK11056 26 FAALFSSIVPFSIFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLYSAFVRAEYPEIGS-----NFFPAVLS 100 (120)
T ss_pred hHHHHccccccHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCccccc-----chHHHHHH
Confidence 344444432223333557888899999983221 1234567788999999999996543232222 2233332
Q ss_pred HHHHHHHhh
Q 028940 189 AYFFLFLAC 197 (201)
Q Consensus 189 ~~v~Lw~~s 197 (201)
..+.+|++-
T Consensus 101 ~~L~~Wi~~ 109 (120)
T PRK11056 101 VILVFWIGR 109 (120)
T ss_pred HHHHHHHHH
Confidence 345678764
No 83
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=54.42 E-value=1.5e+02 Score=25.87 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhH
Q 028940 27 IWGSRNFLLEQYTGHERSEESIEAAFEKLLMTS 59 (201)
Q Consensus 27 Ik~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~ 59 (201)
|-.+-+++...+..|++...-+|++..+|+.++
T Consensus 24 vh~vtkqli~~gksdeeik~Il~e~ipqIleeQ 56 (226)
T COG4858 24 VHEVTKQLIGDGKSDEEIKIILEEMIPQILEEQ 56 (226)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 344555666666788888888999999988665
No 84
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=52.07 E-value=94 Score=24.36 Aligned_cols=56 Identities=5% Similarity=0.272 Sum_probs=33.1
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhh----hhhccchhhhhhccccCCChhHhhhh
Q 028940 31 RNFLLEQYTGHERSEESIEAAFEKLLMTSFRRR----KKEKINLKSRLKKQVEESPPWFKNLL 89 (201)
Q Consensus 31 ~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R----~~Gki~v~~~ir~~~~~~p~w~~~~~ 89 (201)
-..++.+.++|++..++.+.+....-+++..+. .++..+ +..-..|..|+|.+++-
T Consensus 3 v~~~~d~~~~~~e~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~---~~~~eln~~~afv~rwR 62 (123)
T PF11351_consen 3 VGETIDVFRPDPEERAQAKAELQQAALEQFAAEFEAARRARFD---RMQAELNRADAFVRRWR 62 (123)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHhcCcccccccc
Confidence 356778889999988888877777666553332 222221 11222455566876644
No 85
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=49.35 E-value=19 Score=34.43 Aligned_cols=30 Identities=0% Similarity=0.026 Sum_probs=25.7
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCH
Q 028940 13 YKRLGISPYASEEEIWGSRNFLLEQYTGHE 42 (201)
Q Consensus 13 Y~~LGv~~~As~eeIk~A~~~l~~~~~~D~ 42 (201)
++-.+++.--+-+.||+|||+-+.--|||+
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDK 420 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDK 420 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCccc
Confidence 444567777889999999999999999998
No 86
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=48.54 E-value=1.1e+02 Score=23.79 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=32.6
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 028940 91 FVELPPKDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSVV 166 (201)
Q Consensus 91 ~~~~Ps~~~l~~~~~~~~~l~~~~l~~~~~~~~~lqlal~~~a~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~l 166 (201)
.++.|+...+.-...+|++ |-+-+.++.+..-|+... -+.+++.+++++++|+++--.+
T Consensus 59 ~v~i~~~~~~~aa~l~Y~l-------------Pll~li~g~~l~~~~~~~----e~~~~l~~l~~l~~~~~~~~~~ 117 (135)
T PF04246_consen 59 EVEIPESSLLKAAFLVYLL-------------PLLALIAGAVLGSYLGGS----ELWAILGGLLGLALGFLILRLF 117 (135)
T ss_pred EEEeccchHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777666555555554 222233332322222222 6777888888887777765554
No 87
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.30 E-value=36 Score=27.53 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=35.6
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH----hHHHHHHHHHHH
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEK 54 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~ 54 (201)
|+.+..-++|+|++.-+.|||.+.|.+|-+-....+ -...+|=.|.|.
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkEr 107 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKER 107 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHH
Confidence 566778899999999999999999999987653322 233455555555
No 88
>TIGR01337 apcB allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains.
Probab=47.16 E-value=29 Score=28.89 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=40.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLM 57 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm 57 (201)
++=|+.|||+.++.-+-|+.-++.-.+...++.+..++++..+|.++.
T Consensus 113 rE~y~~LgvP~~~~v~al~~mk~~~~~~~~~~~~~~~e~~~yFd~li~ 160 (167)
T TIGR01337 113 KETYNSLGVPIGPTVRAIQIMKEVIISLVGPDNDAGKEIGEPFDYMCS 160 (167)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcHhHHHHHHHHHHHHHH
Confidence 356899999999999999988888877788877777899999998653
No 89
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=47.04 E-value=1.2e+02 Score=24.11 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHH-HHHHHHhh
Q 028940 128 AVSLAACIYFLNEKTKSL---ARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVA-YFFLFLAC 197 (201)
Q Consensus 128 al~~~a~iyfl~~k~~~l---gra~ll~~g~L~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~~-~v~Lw~~s 197 (201)
.+++...+|.|+|+-.+- .-.-.++++|+++|.+..|.++-.=-|..=+ +-+.++.+ .+.+|++-
T Consensus 41 lIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraqyPeiGS-----NFfp~il~l~L~~Wi~~ 109 (117)
T PF07226_consen 41 LIALVLAVYCLYQRYLNHPMPEGTPKLALACFFLGLFGYSAFVRAQYPEIGS-----NFFPSILCLILVFWIGY 109 (117)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhchhhhh-----hHHHHHHHHHHHHHHHH
Confidence 456788899999873221 2234567889999999999996542222222 23333333 34567764
No 90
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=47.03 E-value=70 Score=21.23 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHHH-------HHHHHhhhh--hHHHHHHHHHHHHHHHHHHH
Q 028940 104 LFLFAFMGGWSIMNSAEGGPAFQVAVSLAA-------CIYFLNEKT--KSLARASIIGLGALASGWIL 162 (201)
Q Consensus 104 ~~~~~~l~~~~l~~~~~~~~~lqlal~~~a-------~iyfl~~k~--~~lgra~ll~~g~L~~G~~~ 162 (201)
+.++.++|++.+..|......+...+|... .+...++|. +..++.++.++..+++|.++
T Consensus 3 Gil~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~~Gi~~ 70 (72)
T PF03729_consen 3 GILFIVLGILLLFNPDASLAALAIILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIVLGIIL 70 (72)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Confidence 456677777777776543222222222211 112222332 36677777777777777653
No 91
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=46.91 E-value=2.6e+02 Score=27.54 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=40.8
Q ss_pred hhhhccccCCChhHHHHHH---HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHh-hh----hhHHHHH-HHHHHHHH
Q 028940 86 KNLLNFVELPPKDVIFRRL---FLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLN-EK----TKSLARA-SIIGLGAL 156 (201)
Q Consensus 86 ~~~~~~~~~Ps~~~l~~~~---~~~~~l~~~~l~~~~~~~~~lqlal~~~a~iyfl~-~k----~~~lgra-~ll~~g~L 156 (201)
+.+...+.+|..+++--.. ..|-++.+. +++ +-|-++.+.+ ++..+..+ +| .+++++- +..++.+.
T Consensus 330 E~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGm--M~g-D~GyGLil~l--~~~~l~~~~~k~~~~~~~~~~il~~~gi~si 404 (646)
T PRK05771 330 ESLTEMYSLPKYNEIDPTPFLAIFFPLFFGM--MLG-DAGYGLLLLL--IGLLLSFKLKKKSEGLKRLLKILIYLGISTI 404 (646)
T ss_pred HHHHHHcCCCCCCCcCCccHHHHHHHHHHHH--HHH-hHHHHHHHHH--HHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 3444566778777665332 223332222 223 3344555554 22222211 11 2444443 34677889
Q ss_pred HHHHHHhhhhcccc
Q 028940 157 ASGWILGSVVVPMI 170 (201)
Q Consensus 157 ~~G~~~Gs~l~~~v 170 (201)
+.|++-|+.+...+
T Consensus 405 i~G~lyG~fFG~~~ 418 (646)
T PRK05771 405 IWGLLTGSFFGFSL 418 (646)
T ss_pred HHHHHHHhHhcCcc
Confidence 99999999986544
No 92
>COG4709 Predicted membrane protein [Function unknown]
Probab=46.00 E-value=1.5e+02 Score=25.54 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 028940 146 ARASIIGLGALASGWILGSVVVPM 169 (201)
Q Consensus 146 gra~ll~~g~L~~G~~~Gs~l~~~ 169 (201)
++++.++..+++.+.++|+.+.+.
T Consensus 114 ~lt~if~~~a~~~agil~g~~~~~ 137 (195)
T COG4709 114 ALTLIFSGWALVAAGILGGVILGV 137 (195)
T ss_pred HHHHHHHHHHHHHHHHhcccchhH
Confidence 456666666666666666655433
No 93
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=45.67 E-value=76 Score=24.42 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=15.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 028940 133 ACIYFLNEKTKSLARASIIGLGALASGWILGSV 165 (201)
Q Consensus 133 a~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~ 165 (201)
+..++|-++... ...+++..+++|.++|-.
T Consensus 61 ~lG~WLD~~~~t---~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 61 AVGIWLDRHYPS---PFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred HHHHHHHhhcCC---CcHHHHHHHHHHHHHHHH
Confidence 344555555432 334455556677666643
No 94
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=45.16 E-value=1.9e+02 Score=24.37 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 028940 142 TKSLARASIIGLGALASGWILGS 164 (201)
Q Consensus 142 ~~~lgra~ll~~g~L~~G~~~Gs 164 (201)
.++..|.+++++++..++..+|.
T Consensus 190 ~~~~l~~~~~G~~aa~~~~~iG~ 212 (213)
T PF01988_consen 190 WRSGLEMLLIGLIAAAVTYLIGY 212 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777777777777765
No 95
>COG0597 LspA Lipoprotein signal peptidase [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=44.27 E-value=43 Score=27.89 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHHhhhhh
Q 028940 123 PAFQVAVSLAACIYFLNEKTK 143 (201)
Q Consensus 123 ~~lqlal~~~a~iyfl~~k~~ 143 (201)
..+++++.++...|....+..
T Consensus 73 ~~i~~~vi~~l~~~l~~~~~~ 93 (167)
T COG0597 73 LLIALLVILGLLYFLIRLKKS 93 (167)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 456666665555555544433
No 96
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=43.38 E-value=47 Score=23.63 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCC-CHhHHHHHHHHHHHHHhhHhhhhh
Q 028940 20 PYASEEEIWGSRNFLLEQYTG-HERSEESIEAAFEKLLMTSFRRRK 64 (201)
Q Consensus 20 ~~As~eeIk~A~~~l~~~~~~-D~~~~~~Ie~AYD~Ilm~~l~~R~ 64 (201)
+|-+..||+....+|-++|.+ |..-.+-|+---|.+--+|+++.+
T Consensus 2 ~Dqdqaeirl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkKK 47 (67)
T COG5481 2 SDQDQAEIRLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKKK 47 (67)
T ss_pred CcccHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 355678899999999888766 333445555666777667766543
No 97
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=42.73 E-value=35 Score=32.29 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhhh
Q 028940 22 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKE 66 (201)
Q Consensus 22 As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~G 66 (201)
-|.+||++||+++ |++.++.|+.|++.|- ++.++|..
T Consensus 33 vs~~ei~~A~~~~------~~~~~~ai~~A~~~I~--~fh~~q~~ 69 (393)
T TIGR00069 33 VSEEEIEAAYAAV------DPELKEALELAAENIR--AFHEAQLP 69 (393)
T ss_pred cCHHHHHHHHHcC------CHHHHHHHHHHHHHHH--HHHHHhCC
Confidence 4789999999876 8899999999999985 45455543
No 98
>PF04932 Wzy_C: O-Antigen ligase; InterPro: IPR007016 This group of bacterial proteins are membrane proteins, which include O-antigen ligases (e.g. P26471 from SWISSPROT) and putative hydrogen carbonate transporters [].
Probab=42.34 E-value=96 Score=23.73 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=14.3
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHhhhh
Q 028940 111 GGWSIMNSAEGGPAFQVAVSLAACIYFLNEKT 142 (201)
Q Consensus 111 ~~~~l~~~~~~~~~lqlal~~~a~iyfl~~k~ 142 (201)
..+.++.+...+.-+.+.+++..+.++..++.
T Consensus 6 ~~~~i~~s~SR~~~i~~~~~~~~~~~~~~~~~ 37 (163)
T PF04932_consen 6 SLLAIFLSGSRGAWIALLIALILFLLLFYRKR 37 (163)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333334455555555554444443
No 99
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=42.10 E-value=48 Score=31.73 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhhh
Q 028940 22 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKE 66 (201)
Q Consensus 22 As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~G 66 (201)
.|.+||.+|++++ |++.++.|+.|++.| +++.++|+.
T Consensus 61 Vs~~ei~aA~~~v------~~~~~eai~~A~~~I--~~fH~~Q~p 97 (425)
T COG0141 61 VSAAEIDAAYQRL------DPEVKEALEVAAENI--EAFHEAQLP 97 (425)
T ss_pred cCHHHHHHHHHhC------CHHHHHHHHHHHHHH--HHHHHhhCC
Confidence 5677888777776 777888888888887 556666654
No 100
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=39.91 E-value=41 Score=32.18 Aligned_cols=37 Identities=32% Similarity=0.396 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhhh
Q 028940 22 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKE 66 (201)
Q Consensus 22 As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~G 66 (201)
-|.+||++||+++ |++.++.|+.|++.| +++.++|..
T Consensus 65 Vs~~ei~~A~~~v------~~~~~~ai~~A~~~I--~~Fh~~q~~ 101 (425)
T PRK00877 65 VSEEEIEAAYERL------DPELREALEEAAENI--RAFHEAQKP 101 (425)
T ss_pred eCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCC
Confidence 4778898888776 888899999999998 455555544
No 101
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=39.90 E-value=42 Score=28.08 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=39.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhC-CCHhHHHHHHHHHHHHH
Q 028940 11 DPYKRLGISPYASEEEIWGSRNFLLEQYT-GHERSEESIEAAFEKLL 56 (201)
Q Consensus 11 dpY~~LGv~~~As~eeIk~A~~~l~~~~~-~D~~~~~~Ie~AYD~Il 56 (201)
+=|+.|||+.++--+-|+.-++.-++... +|.+..+.|+.-+|.+.
T Consensus 115 E~Y~~LgvP~~~~i~al~~mk~~~~~~~~~~~~~~~~~~~~yFd~l~ 161 (169)
T CHL00089 115 DTYNSLGVPIAPTVRSIELLKEIIKEEIKSQNIDAHDYIDEPFQYMI 161 (169)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 45899999999999999998888888877 46677889999999965
No 102
>PRK13770 histidinol dehydrogenase; Provisional
Probab=39.84 E-value=42 Score=32.03 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhh
Q 028940 22 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKK 65 (201)
Q Consensus 22 As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~ 65 (201)
-|.+||++|++++ |++.++.|+.|++.|- ++.++|.
T Consensus 57 Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI~--~fh~~q~ 92 (416)
T PRK13770 57 ISHEQIKAAFDTL------DEKTKQALQQSYERIK--AYQESIK 92 (416)
T ss_pred eCHHHHHHHHHcC------CHHHHHHHHHHHHHHH--HHHHHhC
Confidence 4789999998876 8888999999999984 4444443
No 103
>PRK10692 hypothetical protein; Provisional
Probab=39.49 E-value=79 Score=24.08 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=25.2
Q ss_pred HHHHHHhhhhccccccccCCCcccHHHHHHHHHHHHHHHhh
Q 028940 157 ASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFFLFLAC 197 (201)
Q Consensus 157 ~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~~~v~Lw~~s 197 (201)
-+|.+..+++..+ |...+|+..+--.+.++|.=.++|++.
T Consensus 21 Mv~gigysi~~~i-~~L~Lp~~~~~gal~~IFiGAllWL~G 60 (92)
T PRK10692 21 MVVGVGYSILNQL-PQLNLPQFFAHGALLSIFVGALLWLAG 60 (92)
T ss_pred HHHHHHHHHHHhc-ccCCchHHHHhhHHHHHHHHHHHHHhc
Confidence 4555666666443 555566555556677777777888764
No 104
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=39.49 E-value=42 Score=24.74 Aligned_cols=46 Identities=13% Similarity=-0.046 Sum_probs=31.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMT 58 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~ 58 (201)
.+|||..++-=++.+|..+.+.- ++.+-+.+.-.+|.++-..++.+
T Consensus 41 ~~nPY~L~~~i~gi~F~~aD~iA----~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 41 KENPYRLIEDIDGIGFKTADKIA----LKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HH-STCCCB-SSSSBHHHHHHHH----HTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHChHHHHHHccCCCHHHHHHHH----HHcCCCCCCHHHHHHHHHHHHHH
Confidence 36999999966899998886544 44566666777888888887766
No 105
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=39.29 E-value=82 Score=23.84 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=26.0
Q ss_pred HHHHHHhhhhccccccccCCCcccHHHHHHHHHHHHHHHhh
Q 028940 157 ASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFFLFLAC 197 (201)
Q Consensus 157 ~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~~~v~Lw~~s 197 (201)
-+|.+..+++..+ |...+|+..+--.+.++|.=.++|++.
T Consensus 21 Mv~gigysi~~~~-~~L~Lp~~~~~gal~~IFiGAllWL~G 60 (89)
T PF10762_consen 21 MVGGIGYSILSQI-PQLGLPQFLAHGALFSIFIGALLWLVG 60 (89)
T ss_pred HHHhHHHHHHHhc-ccCCCcHHHHhhHHHHHHHHHHHHHhc
Confidence 3555666666444 555566555556777888888888864
No 106
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=39.21 E-value=44 Score=31.97 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhh
Q 028940 22 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKK 65 (201)
Q Consensus 22 As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~ 65 (201)
-|.+||++||+++ |++.++.|+.|++.|. ++.++|.
T Consensus 58 Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI~--~fh~~q~ 93 (426)
T PRK12447 58 LSAAEIDAAVAKV------PEQVKEDIRFAQDQVR--RFAEAQR 93 (426)
T ss_pred cCHHHHHHHHhhC------CHHHHHHHHHHHHHHH--HHHHHhc
Confidence 4778999988776 8888999999999984 4445543
No 107
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=39.13 E-value=77 Score=27.34 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 028940 141 KTKSLARASIIGLGALASGWILGSVVV 167 (201)
Q Consensus 141 k~~~lgra~ll~~g~L~~G~~~Gs~l~ 167 (201)
|.|+++|.+.+-+.|.++|.++|.+..
T Consensus 4 ~k~~~~~~~~~illg~~iGg~~G~~~~ 30 (248)
T PF11368_consen 4 KKKRILRFLLLILLGGLIGGFIGFFIG 30 (248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445699999997777777777777664
No 108
>PF13311 DUF4080: Protein of unknown function (DUF4080)
Probab=39.05 E-value=38 Score=28.31 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=25.9
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHH--HHHHHhCC
Q 028940 8 KVWDPYKRLGISPYASEEEIWGSRN--FLLEQYTG 40 (201)
Q Consensus 8 ~~~dpY~~LGv~~~As~eeIk~A~~--~l~~~~~~ 40 (201)
+..-||+||. ++.-|++||++-++ ++++.|-.
T Consensus 9 ~~~pPYEVL~-t~~Ls~~ei~~Lk~~e~~le~yyN 42 (190)
T PF13311_consen 9 SPYPPYEVLS-TKWLSFDEIQRLKRFEDMLEKYYN 42 (190)
T ss_pred CCCCCeeeee-CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4567999998 78899999999876 77777643
No 109
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=38.77 E-value=3.1e+02 Score=25.14 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=22.4
Q ss_pred HHHHhhhhhHH-HHHHHHHHHHHHHHHHHhhhhcccc
Q 028940 135 IYFLNEKTKSL-ARASIIGLGALASGWILGSVVVPMI 170 (201)
Q Consensus 135 iyfl~~k~~~l-gra~ll~~g~L~~G~~~Gs~l~~~v 170 (201)
-|.+|++-+++ +.-+.+-+.+++=|.+.|..+.+..
T Consensus 153 ~y~ln~~~~s~~~~R~~ll~~a~~QGvL~Ga~ls~~~ 189 (299)
T PF05884_consen 153 YYYLNKEDGSLAESRLALLFFALFQGVLVGAGLSHLY 189 (299)
T ss_pred HhhcccccCchHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45566554333 3334455667888999999886643
No 110
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=37.42 E-value=46 Score=31.44 Aligned_cols=39 Identities=31% Similarity=0.303 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhhhc
Q 028940 21 YASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEK 67 (201)
Q Consensus 21 ~As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~Gk 67 (201)
--|.+||++|++.+ |++.++.|+.|++.|. ++.++|..+
T Consensus 36 ~vs~~ei~~A~~~~------~~~~~~ai~~A~~nI~--~fh~~q~~~ 74 (390)
T cd06572 36 RVSEEEIDAAYAAV------DPELKEAIELAAENIR--AFHEAQLPK 74 (390)
T ss_pred ccCHHHHHHHHhcC------CHHHHHHHHHHHHHHH--HHHHHhCCC
Confidence 45788999998877 8899999999999984 555555443
No 111
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=37.24 E-value=1.9e+02 Score=22.08 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 028940 97 KDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIGLGA 155 (201)
Q Consensus 97 ~~~l~~~~~~~~~l~~~~l~~~~~~~~~lqlal~~~a~iyfl~~k~~~lgra~ll~~g~ 155 (201)
..+..+-....+.+.++.++... -++.++..+....+...-..++..+..+.+++.
T Consensus 69 ~~~~~~~~~~~~~~~~y~~~~~~---lGf~~at~~~~~~~~~~~g~r~~~~~~~~s~~~ 124 (141)
T PF07331_consen 69 RVDWKRVLLVLGLLVLYVLLLEY---LGFIIATFLFLFAFMLLLGERRWLRLLLISVVF 124 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 33333444444444444444332 355555444444444444445555555554433
No 112
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=36.44 E-value=2.7e+02 Score=23.68 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=28.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHH--H-HHHHHHhhhhhH-HHHHHHH
Q 028940 94 LPPKDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSL--A-ACIYFLNEKTKS-LARASII 151 (201)
Q Consensus 94 ~Ps~~~l~~~~~~~~~l~~~~l~~~~~~~~~lqlal~~--~-a~iyfl~~k~~~-lgra~ll 151 (201)
.|+-.++.+...+|..+...+-=.+=+ .++|+++.+ . .+.|.+.|+.++ |+-+.+.
T Consensus 78 ~~~w~~v~R~i~~FvGi~~airkl~w~--s~~Q~s~~lalln~~LW~lfDrT~sGf~ls~~v 137 (193)
T PF07281_consen 78 KPDWSSVLRSIGAFVGISFAIRKLPWS--SSLQASITLALLNPGLWWLFDRTRSGFLLSTAV 137 (193)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 445666777776664443333222222 255654433 3 357888887544 4444444
No 113
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=36.29 E-value=50 Score=31.45 Aligned_cols=37 Identities=32% Similarity=0.322 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhh
Q 028940 21 YASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKK 65 (201)
Q Consensus 21 ~As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~ 65 (201)
.-|.+||++|++++ |++.++.|+.|+|.|- ++.++|+
T Consensus 49 ~Vs~~ei~~A~~~l------~~~~~~Ai~~A~~~I~--~fh~~q~ 85 (412)
T PF00815_consen 49 RVSEEEIAAAYAKL------DPELREAIEQAAENIR--AFHEAQL 85 (412)
T ss_dssp B--HHHHHHHHHHS-------HHHHHHHHHHHHHHH--HHHHTT-
T ss_pred EecHHHHHhhhhcC------CHHHHHHHHHHHHHHH--HHHHHhc
Confidence 34789999999988 8899999999999984 4555554
No 114
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=36.16 E-value=1.6e+02 Score=26.95 Aligned_cols=49 Identities=16% Similarity=-0.018 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHhhhhhHHHHHH
Q 028940 101 FRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARAS 149 (201)
Q Consensus 101 ~~~~~~~~~l~~~~l~~~~~~~~~lqlal~~~a~iyfl~~k~~~lgra~ 149 (201)
-+-+...++.|+.....-...=|=.-++++++.+.|++.||..+..-..
T Consensus 128 Q~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~~Ygl~RK~~~v~a~~ 176 (293)
T COG2962 128 QWIAVGLAAAGVLIQTWLLGSLPWVALALALSFGLYGLLRKKLKVDALT 176 (293)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 3445555666665555444444777788889999999999965544333
No 115
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=35.42 E-value=2.4e+02 Score=22.87 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 028940 52 FEKLLMT 58 (201)
Q Consensus 52 YD~Ilm~ 58 (201)
|+-...+
T Consensus 29 Y~e~f~d 35 (181)
T PF08006_consen 29 YEEYFDD 35 (181)
T ss_pred HHHHHHH
Confidence 3333333
No 116
>PRK11677 hypothetical protein; Provisional
Probab=34.94 E-value=33 Score=27.68 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhhccc
Q 028940 150 IIGLGALASGWILGSVVVPM 169 (201)
Q Consensus 150 ll~~g~L~~G~~~Gs~l~~~ 169 (201)
++++.+|++|.++|-+++-.
T Consensus 4 ~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56678899999999888654
No 117
>COG5393 Predicted membrane protein [Function unknown]
Probab=34.81 E-value=66 Score=25.88 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhH
Q 028940 123 PAFQVAVSLAACIYFLNEKTKS 144 (201)
Q Consensus 123 ~~lqlal~~~a~iyfl~~k~~~ 144 (201)
..+.+++|..+|+|.+++.+++
T Consensus 89 ~~vl~vl~~i~ciW~lrks~~s 110 (131)
T COG5393 89 TAVLLVLALIGCIWTLRKSRKS 110 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 4455677777888888776544
No 118
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=33.99 E-value=2.4e+02 Score=23.77 Aligned_cols=59 Identities=20% Similarity=0.103 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHH
Q 028940 129 VSLAACIYFLNEKTKSL----ARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVA 189 (201)
Q Consensus 129 l~~~a~iyfl~~k~~~l----gra~ll~~g~L~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~~ 189 (201)
+++.+++.+|.+|.+.+ -++..+|+..+.+|++.|++=.... =+-.=+|.|-+..+++.
T Consensus 29 ~~~~~s~~yL~~~~~~~D~la~~~a~iGf~f~tl~LitGaiWak~~--WG~~W~WDpr~t~~lIl 91 (184)
T TIGR01191 29 MMAIASFIFLVWKHPLSDLAAKAAAPIGAVFTLIALVTGSLWGKPM--WGTWWVWDARLTSVLIL 91 (184)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCChHHHHHHHH
Confidence 33455555555554433 3455677777788888887664321 11111456666665554
No 119
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=33.50 E-value=22 Score=26.12 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=21.5
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhC
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYT 39 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~ 39 (201)
++..-||+++.|+|++.|+.+-+ .-.+|++
T Consensus 11 sDp~~p~kv~sVPE~apftaVlk---faAeeF~ 40 (76)
T PF03671_consen 11 SDPKLPYKVISVPEEAPFTAVLK---FAAEEFK 40 (76)
T ss_dssp TSSTS-EEEEEEETTSBHHHHHH---HHHHHTT
T ss_pred cCCCCcceEEecCCCCchHHHHH---HHHHHcC
Confidence 45667999999999999998754 3344443
No 120
>smart00150 SPEC Spectrin repeats.
Probab=33.26 E-value=1.2e+02 Score=20.76 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=9.9
Q ss_pred HHHhCCCHhHHHHHHHHHHHHH
Q 028940 35 LEQYTGHERSEESIEAAFEKLL 56 (201)
Q Consensus 35 ~~~~~~D~~~~~~Ie~AYD~Il 56 (201)
..+....+..+..++...+.++
T Consensus 44 ~~e~~~~~~~v~~~~~~~~~L~ 65 (101)
T smart00150 44 EAELEAHEERVEALNELGEQLI 65 (101)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3333344444555555444433
No 121
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.20 E-value=57 Score=23.79 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 028940 144 SLARASIIGLGALASGWILGSVVV 167 (201)
Q Consensus 144 ~lgra~ll~~g~L~~G~~~Gs~l~ 167 (201)
+++-++++.+.||.+|.+.|-+++
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fia 25 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888899999999998774
No 122
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=33.19 E-value=34 Score=25.34 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=22.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhC
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYT 39 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~ 39 (201)
++.+-||++|.|+|+|.|..+-+ .-.+|++
T Consensus 11 Sdp~lpfkvlsVpE~aPftAvlk---faAEeFk 40 (82)
T cd01766 11 SDPKLPFKVLSVPESTPFTAVLK---FAAEEFK 40 (82)
T ss_pred CCCCCcceEEeccccCchHHHHH---HHHHhcC
Confidence 45667999999999999987653 4455554
No 123
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.85 E-value=82 Score=27.33 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHhCCC---HhHHHHHHHHHHHHH
Q 028940 22 ASEEEIWGSRNFLLEQYTGH---ERSEESIEAAFEKLL 56 (201)
Q Consensus 22 As~eeIk~A~~~l~~~~~~D---~~~~~~Ie~AYD~Il 56 (201)
+.+||+|.+|+....+...= +++..++|++||.++
T Consensus 56 ~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~ll 93 (211)
T COG3167 56 AEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILL 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 56889999999888876543 467789999999965
No 124
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=32.80 E-value=2.9e+02 Score=23.69 Aligned_cols=42 Identities=24% Similarity=0.210 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHH
Q 028940 146 ARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVA 189 (201)
Q Consensus 146 gra~ll~~g~L~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~~ 189 (201)
-|+..+|+..+.+|.+.|+.-+...-+. .=.|.|-.+.|+++
T Consensus 152 ~~~~~~Gf~~ltl~li~G~iWa~~~wg~--~w~wDpK~~~sli~ 193 (243)
T TIGR03144 152 YRTIAIGFPLLTIGIISGAVWANEAWGS--YWSWDPKETWALIT 193 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCHHHHHHHHH
Confidence 4788899999999999999776532111 11356677766654
No 125
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=32.70 E-value=30 Score=26.94 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc-cccccccCCCcccHHHHHHHHHHHHHHHhhhcCC
Q 028940 146 ARASIIGLGALASGWILGSVVV-PMIPTVLIHPTWTLELLTSLVAYFFLFLACTFFK 201 (201)
Q Consensus 146 gra~ll~~g~L~~G~~~Gs~l~-~~v~~~~l~~~~s~e~~~sl~~~v~Lw~~s~fLr 201 (201)
+.++++++|.+++|.++..++- ..+.+ .-.+.||+-. ++..++-|++|-++|
T Consensus 4 ~dvl~Iglgv~~~Gg~~Y~~l~~~G~d~-~~AGi~sq~~---lv~glvgW~~sYlfR 56 (104)
T PF11460_consen 4 IDVLLIGLGVFLLGGLLYGGLQAAGLDS-LSAGIWSQAL---LVLGLVGWVSSYLFR 56 (104)
T ss_pred cceeeecHHHHHHHHHHHHHHHHcCCCc-hhhhHHHHHH---HHHHHHHHHhHHHhh
Confidence 3456788888999998888872 11111 1112343332 233348898887766
No 126
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=32.40 E-value=54 Score=25.68 Aligned_cols=31 Identities=16% Similarity=0.036 Sum_probs=26.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCHhHHH
Q 028940 16 LGISPYASEEEIWGSRNFLLEQYTGHERSEE 46 (201)
Q Consensus 16 LGv~~~As~eeIk~A~~~l~~~~~~D~~~~~ 46 (201)
.|-.++++.|+|.++.++.+++++-+++...
T Consensus 8 IGcr~~~~~e~i~~ai~~~L~~~~l~~~si~ 38 (126)
T PRK07027 8 IGCRRGVPAEQIEAAIRAALAQRPLASADVR 38 (126)
T ss_pred eccCCCCCHHHHHHHHHHHHHHcCCCHHHhh
Confidence 5678999999999999999999987776554
No 127
>PRK00523 hypothetical protein; Provisional
Probab=32.34 E-value=60 Score=23.71 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 028940 145 LARASIIGLGALASGWILGSVVV 167 (201)
Q Consensus 145 lgra~ll~~g~L~~G~~~Gs~l~ 167 (201)
+|-++++++.+|++|.+.|-+++
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888889988887773
No 128
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=32.25 E-value=1e+02 Score=29.14 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=26.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 028940 134 CIYFLNEKTKSLARASIIGLGALASGWILGSVV 166 (201)
Q Consensus 134 ~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~l 166 (201)
..+.+++|..+++.+..+++..+.++..+|.-+
T Consensus 175 ~G~~~y~~~~~~~~~t~i~vvll~~~v~~G~~~ 207 (376)
T PF02554_consen 175 FGLLVYKRGGNLGPATIIGVVLLLLAVWLGMYF 207 (376)
T ss_pred HhHhheecCCchHhhHHHHHHHHHHHHHhhhhc
Confidence 345588888999999999988888888888765
No 129
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.24 E-value=68 Score=26.30 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhCCCH-------------hHHHHHHHHHHHHHhhHhhhh
Q 028940 24 EEEIWGSRNFLLEQYTGHE-------------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 24 ~eeIk~A~~~l~~~~~~D~-------------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
.+..+..|+.+...||+|. +....++.||+.+...-++..
T Consensus 17 ~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~ 69 (174)
T COG1076 17 LDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAE 69 (174)
T ss_pred HhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3445566788889999875 255789999999776655554
No 130
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=32.19 E-value=66 Score=24.21 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028940 146 ARASIIGLGALASGWIL 162 (201)
Q Consensus 146 gra~ll~~g~L~~G~~~ 162 (201)
.|-++++||.+++|.++
T Consensus 66 ~WN~~IGfg~~~~Gf~m 82 (87)
T PF06781_consen 66 NWNLAIGFGLMIVGFLM 82 (87)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 46677888888888765
No 131
>PRK01844 hypothetical protein; Provisional
Probab=31.56 E-value=63 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 028940 145 LARASIIGLGALASGWILGSVVV 167 (201)
Q Consensus 145 lgra~ll~~g~L~~G~~~Gs~l~ 167 (201)
+|-+.++.+.+|++|.+.|-+++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788889999998887773
No 132
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=31.42 E-value=1.1e+02 Score=21.83 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHH
Q 028940 24 EEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 55 (201)
Q Consensus 24 ~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~I 55 (201)
.++|++..+..+.+|+.|. .+..++|.|
T Consensus 8 ~~~i~~~l~~~~~~y~~~~----~~~~~~d~i 35 (99)
T cd03166 8 MSEFNDSFNQMISNYNKTN----DFRKILDRM 35 (99)
T ss_pred HHHHHHHHHHHHHHcCCCH----HHHHHHHHH
Confidence 4667777778888888752 467778874
No 133
>PRK00907 hypothetical protein; Provisional
Probab=30.76 E-value=88 Score=23.60 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=31.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCC--H----------------------hHHHHHHHHHHHHH
Q 028940 11 DPYKRLGISPYASEEEIWGSRNFLLEQYTGH--E----------------------RSEESIEAAFEKLL 56 (201)
Q Consensus 11 dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D--~----------------------~~~~~Ie~AYD~Il 56 (201)
=||++.|... +++.++-...+++|.|| . ...+++++-|..+.
T Consensus 18 fpiKVmG~a~----~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~ 83 (92)
T PRK00907 18 FELSAMGTAE----RGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALR 83 (92)
T ss_pred CeEEEEEcCc----hhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHh
Confidence 4899999866 67777777888888873 2 25577888777754
No 134
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=29.98 E-value=90 Score=27.00 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=29.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHH-HHhCCCHhHHHHHHHHHHH
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLL-EQYTGHERSEESIEAAFEK 54 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~-~~~~~D~~~~~~Ie~AYD~ 54 (201)
-||-..|||+...+ +=++.|..|. ++.+.+.++.-+-+.|||+
T Consensus 37 LdPLtaLGIeArsd--~ERrryAEl~vk~E~~rvekeLA~qrayd~ 80 (200)
T TIGR03759 37 LDPLTALGIEARSD--EERRRYAELWVKQEAQRVEKELAFQRAYDA 80 (200)
T ss_pred CChhhhhccccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999976543 3355565553 3345555666678888887
No 135
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=29.33 E-value=2.3e+02 Score=20.67 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=33.6
Q ss_pred CChhHhhhhccccCCChhHHHHHHHHHHHHHHHHHhhcCCC-----CchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 028940 81 SPPWFKNLLNFVELPPKDVIFRRLFLFAFMGGWSIMNSAEG-----GPAFQVAVSLAACIYFLNEKTKSLARASIIGLGA 155 (201)
Q Consensus 81 ~p~w~~~~~~~~~~Ps~~~l~~~~~~~~~l~~~~l~~~~~~-----~~~lqlal~~~a~iyfl~~k~~~lgra~ll~~g~ 155 (201)
.|+|.++++ + ..+.+++++|.+-.++.+... ++.-.++.. ....+..|.++++.+++.+.++
T Consensus 28 ~~~~~~~~l---~-------~vp~avl~aLv~~~i~~~~~~~~~~~~~~~l~a~~---~~~~~~~~~~~~~~~v~~G~~~ 94 (99)
T PF05437_consen 28 LPPRVRRFL---R-------YVPPAVLAALVVPSIFFPTGSLELSLGNPYLIAAL---VAALVALRTRNLLLSVLAGVAA 94 (99)
T ss_pred CCHHHHHHH---H-------HhHHHHHHHHHHHHHccCccccccccchHHHHHHH---HHHHHHHHHcchHHHHHHHHHH
Confidence 477777666 2 123456677777777755332 222333322 2233334555788887776554
Q ss_pred H
Q 028940 156 L 156 (201)
Q Consensus 156 L 156 (201)
.
T Consensus 95 ~ 95 (99)
T PF05437_consen 95 F 95 (99)
T ss_pred H
Confidence 3
No 136
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=28.55 E-value=49 Score=30.59 Aligned_cols=31 Identities=16% Similarity=0.461 Sum_probs=27.2
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhCCCH
Q 028940 12 PYKRLGISPYASEEEIWGSRNFLLEQYTGHE 42 (201)
Q Consensus 12 pY~~LGv~~~As~eeIk~A~~~l~~~~~~D~ 42 (201)
-|+.=.++|+-+.||+++|++.....+|||.
T Consensus 56 ~yk~G~~~p~~t~~~lW~Akkl~dS~~HPDT 86 (328)
T KOG3767|consen 56 DYKAGKVPPGLTDDELWKAKKLYDSTFHPDT 86 (328)
T ss_pred hhccCCcCCCCcHHHHHHHHHHHhcccCCCC
Confidence 3666678888999999999999999999996
No 137
>PRK14788 lipoprotein signal peptidase; Provisional
Probab=28.51 E-value=97 Score=26.55 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=4.9
Q ss_pred HHHHhhhhccc
Q 028940 159 GWILGSVVVPM 169 (201)
Q Consensus 159 G~~~Gs~l~~~ 169 (201)
|+++||.+.|+
T Consensus 95 ~LIlGGAiGNl 105 (200)
T PRK14788 95 SLILAGAIGNI 105 (200)
T ss_pred HHHHHHHhhhh
Confidence 34444444433
No 138
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=28.48 E-value=1.6e+02 Score=26.74 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=34.8
Q ss_pred CCcccccCCCC-CCCHHHHHHHHHHHHHHhC-------CC-----------HhHHHHHHHHHHHHH
Q 028940 10 WDPYKRLGISP-YASEEEIWGSRNFLLEQYT-------GH-----------ERSEESIEAAFEKLL 56 (201)
Q Consensus 10 ~dpY~~LGv~~-~As~eeIk~A~~~l~~~~~-------~D-----------~~~~~~Ie~AYD~Il 56 (201)
.+=++.||+++ +-|.||+++-.++++++.. .| ++-.+++..||+.+.
T Consensus 82 ~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~ 147 (318)
T PF12725_consen 82 PPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLA 147 (318)
T ss_pred cCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHH
Confidence 34568899998 8999999999888877642 22 344567888888854
No 139
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=28.26 E-value=1.5e+02 Score=19.49 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028940 146 ARASIIGLGALASGWILG 163 (201)
Q Consensus 146 gra~ll~~g~L~~G~~~G 163 (201)
+.+-.+.+.++++|.+.|
T Consensus 29 ~t~p~~~~~g~llG~~~g 46 (55)
T PF09527_consen 29 GTSPWFTLIGLLLGIAAG 46 (55)
T ss_pred CCChHHHHHHHHHHHHHH
Confidence 334455455555555544
No 140
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=28.19 E-value=2.3e+02 Score=23.38 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHhhh
Q 028940 97 KDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEK 141 (201)
Q Consensus 97 ~~~l~~~~~~~~~l~~~~l~~~~~~~~~lqlal~~~a~iyfl~~k 141 (201)
.+-+.+|.++|.++ +..+.++++...|+|-.+
T Consensus 58 s~RM~rRm~~~~Gi-------------P~~lG~~~f~~~y~l~~~ 89 (153)
T PF11947_consen 58 SNRMLRRMAVFVGI-------------PTALGVAVFVVFYYLKSR 89 (153)
T ss_pred HHHHHHHHHHHhch-------------HHHHHHHHHHHHHHHHhc
Confidence 34566666554432 556666777777877765
No 141
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=28.14 E-value=43 Score=24.48 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=15.9
Q ss_pred HhCCCHhHHHHHHHHHHHHHhhHh
Q 028940 37 QYTGHERSEESIEAAFEKLLMTSF 60 (201)
Q Consensus 37 ~~~~D~~~~~~Ie~AYD~Ilm~~l 60 (201)
..+=+++.+..|++||..|..+.+
T Consensus 25 R~Gfs~~~i~~l~~ayr~l~~~~~ 48 (83)
T PF13720_consen 25 RRGFSKEEISALRRAYRILFRSGL 48 (83)
T ss_dssp HTTS-HHHHHHHHHHHHHHHTSSS
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCC
Confidence 344466778888888888776544
No 142
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=27.99 E-value=74 Score=23.26 Aligned_cols=16 Identities=50% Similarity=0.546 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 028940 182 ELLTSLVAYFFLFLAC 197 (201)
Q Consensus 182 e~~~sl~~~v~Lw~~s 197 (201)
|++.|+.+.++|=+++
T Consensus 53 ELlIsl~aSvFlGFG~ 68 (79)
T KOG4452|consen 53 ELLISLTASVFLGFGS 68 (79)
T ss_pred HHHHHHHHHHHHhhhH
Confidence 4444444444443333
No 143
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=27.97 E-value=1.4e+02 Score=25.94 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhhcccc
Q 028940 153 LGALASGWILGSVVVPMI 170 (201)
Q Consensus 153 ~g~L~~G~~~Gs~l~~~v 170 (201)
+--|+.|+++||+++..+
T Consensus 133 lllLvgGli~GGLlA~~~ 150 (239)
T PF13105_consen 133 LLLLVGGLILGGLLAMLI 150 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344888999999987665
No 144
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=27.48 E-value=1.7e+02 Score=23.96 Aligned_cols=35 Identities=23% Similarity=0.080 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 028940 124 AFQVAVSLAACIYFLNEKTKSLARASIIGLGALASG 159 (201)
Q Consensus 124 ~lqlal~~~a~iyfl~~k~~~lgra~ll~~g~L~~G 159 (201)
-||++|+ .++|-.|.+|.-=+.-+++++.+|+++|
T Consensus 119 ~lQIaI~-Lasit~Lt~~~~l~~~~~~~g~~G~~~~ 153 (157)
T PF14235_consen 119 LLQIAIV-LASITALTKKKWLWYASLGLGAVGVAFF 153 (157)
T ss_pred HHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4677776 3455666665444444455544444444
No 145
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=27.06 E-value=43 Score=16.66 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 028940 45 EESIEAAFEKL 55 (201)
Q Consensus 45 ~~~Ie~AYD~I 55 (201)
.++++.||+.+
T Consensus 3 ~~~V~~aY~~l 13 (14)
T PF07709_consen 3 FEKVKNAYEQL 13 (14)
T ss_pred HHHHHHHHHhc
Confidence 45566666653
No 146
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=26.66 E-value=74 Score=23.87 Aligned_cols=17 Identities=18% Similarity=0.433 Sum_probs=13.9
Q ss_pred HhHHHHHHHHHHHHHhh
Q 028940 42 ERSEESIEAAFEKLLMT 58 (201)
Q Consensus 42 ~~~~~~Ie~AYD~Ilm~ 58 (201)
.++..++|.|+|+|+..
T Consensus 63 ~KKK~~ln~afDAiLNK 79 (83)
T PF05814_consen 63 IKKKRDLNDAFDAILNK 79 (83)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45678999999999864
No 147
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=25.94 E-value=5.8e+02 Score=24.25 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 028940 124 AFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSV 165 (201)
Q Consensus 124 ~lqlal~~~a~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~ 165 (201)
.+.+++.+...++.+++..|.+.|...+ +.++++||++...
T Consensus 172 ~~~~a~~~l~~il~~~~~~~g~~~~~sv-LiGiv~G~v~a~~ 212 (433)
T PRK11412 172 PFGLSVAVMCLVLAMIIFLPQRIARYSL-LVGTIVGWILWAF 212 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHH
Confidence 4557778888888999988888887766 4567888887553
No 148
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.85 E-value=2.1e+02 Score=26.29 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 028940 144 SLARASIIGLGALASGWILGSVVVP 168 (201)
Q Consensus 144 ~lgra~ll~~g~L~~G~~~Gs~l~~ 168 (201)
+-+-|.++++|+|++||+++-.+--
T Consensus 118 s~~~Ai~isl~~l~~gWlvYd~lCr 142 (300)
T PF06181_consen 118 SPWQAIAISLGSLVLGWLVYDGLCR 142 (300)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777888888888888887754
No 149
>PF08876 DUF1836: Domain of unknown function (DUF1836); InterPro: IPR014975 This group of proteins are functionally uncharacterised.
Probab=25.72 E-value=57 Score=25.17 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 028940 20 PYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEK 54 (201)
Q Consensus 20 ~~As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~ 54 (201)
.--|.+||++..+.....++.++ ..++.|||.
T Consensus 73 ~vlsi~dI~~ll~~~~~~~~~~~---~~~~~~Y~~ 104 (105)
T PF08876_consen 73 QVLSIDDIKKLLDLQFNNYEDDE---ISLEDAYNY 104 (105)
T ss_pred ccCCHHHHHHHHHHHHhcccccC---CCHHHHHhc
Confidence 45688999999999888877766 778888874
No 150
>PF02868 Peptidase_M4_C: Thermolysin metallopeptidase, alpha-helical domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR001570 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in the C-terminal of the peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1U4G_A 1EZM_A 3DBK_A 1LND_E 3T2I_E 3FOR_A 3FGD_A ....
Probab=25.69 E-value=1.2e+02 Score=24.83 Aligned_cols=39 Identities=5% Similarity=0.129 Sum_probs=29.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCCHhHHHHHHHHHHHH
Q 028940 17 GISPYASEEEIWGSRNFLLEQY-TGHERSEESIEAAFEKL 55 (201)
Q Consensus 17 Gv~~~As~eeIk~A~~~l~~~~-~~D~~~~~~Ie~AYD~I 55 (201)
-++++++|.+-+.+--+-.++. +.+......|.+||+++
T Consensus 123 ~l~~~s~F~~~~~~~i~aA~~l~g~~s~~~~aV~~Aw~aV 162 (164)
T PF02868_consen 123 YLTPNSTFSDARRATIQAAKDLYGANSAEVKAVKDAWDAV 162 (164)
T ss_dssp TS-TT-BHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHc
Confidence 4689999999999888777775 55557788999999874
No 151
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=25.52 E-value=1.4e+02 Score=19.85 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhh
Q 028940 24 EEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRK 64 (201)
Q Consensus 24 ~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~ 64 (201)
-..|.+|+--|+.+|+=|++ +||+.+...+.+.|.
T Consensus 12 r~~I~~AkgiLm~~~g~~e~------~A~~~Lr~~Am~~~~ 46 (56)
T PF03861_consen 12 RRVIEQAKGILMARYGLSED------EAYRLLRRQAMRRRR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHT--HH------HHHHHHHHHHHHCTS
T ss_pred hHHHHHHHHHHHHHhCcCHH------HHHHHHHHHHHHcCC
Confidence 45678888888888887764 688887766665554
No 152
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.44 E-value=44 Score=26.36 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhhccc
Q 028940 152 GLGALASGWILGSVVVPM 169 (201)
Q Consensus 152 ~~g~L~~G~~~Gs~l~~~ 169 (201)
++.++++|.++|-+++-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRL 19 (128)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456788888888777544
No 153
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=25.29 E-value=2e+02 Score=28.75 Aligned_cols=41 Identities=34% Similarity=0.476 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 028940 124 AFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSVVV 167 (201)
Q Consensus 124 ~lqlal~~~a~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~l~ 167 (201)
...+|+-+|...|+++ .+++-+..+++..+.++...|+-+.
T Consensus 168 tipiA~~~G~~~~~~r---g~~~~~siig~~ll~~ai~~g~~v~ 208 (575)
T COG1966 168 TIPLAVLMGIYLYRLR---GNMGISSVIGLALLILAIYLGSVVP 208 (575)
T ss_pred HHHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHhccccc
Confidence 3456666666666665 7788888888888999988888764
No 154
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=25.18 E-value=1.7e+02 Score=23.97 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 028940 123 PAFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSVVVPMIP 171 (201)
Q Consensus 123 ~~lqlal~~~a~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~l~~~v~ 171 (201)
+.-.+|+..|..+-.++.|.-++.+.-=-...++++|.++|-.+...+|
T Consensus 78 ~~g~~Ai~~Gilva~l~g~Gv~Ll~~~P~v~~gLviGTIiGV~ff~Gvp 126 (140)
T PF04284_consen 78 WKGIIAILAGILVAWLGGRGVNLLKVQPQVIVGLVIGTIIGVAFFKGVP 126 (140)
T ss_pred HHHHHHHHHHHHHHHHhccChHHHccCChhhHHHHHHHHHHHHHcCCcc
Confidence 4445788889999999999888887776767778888888888776665
No 155
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=24.88 E-value=3.2e+02 Score=23.78 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 028940 130 SLAACIYFLNEKTKSLARASIIGLGALASGWILGSVV 166 (201)
Q Consensus 130 ~~~a~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~l 166 (201)
++.+.+|+-++...++|+.+..++-+++++.++.-++
T Consensus 130 ~ls~~g~~tk~Dls~l~~~l~~aligLiiasvvn~Fl 166 (233)
T COG0670 130 ALSLYGYTTKRDLSSLGSFLFMALIGLIIASLVNIFL 166 (233)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999777777777655544
No 156
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.80 E-value=77 Score=21.45 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 028940 149 SIIGLGALASGWILGSVV 166 (201)
Q Consensus 149 ~ll~~g~L~~G~~~Gs~l 166 (201)
.++-++++++|.++|.++
T Consensus 21 ~l~il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 21 GLLILIAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345567778888888866
No 157
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=24.59 E-value=90 Score=27.07 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=55.2
Q ss_pred CCCCccccc---CCCCCCCHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHhhHhhhhhhhccc-hhhhhhcc-ccC
Q 028940 8 KVWDPYKRL---GISPYASEEEIWGSRNFLLEQYTGHERSE--ESIEAAFEKLLMTSFRRRKKEKIN-LKSRLKKQ-VEE 80 (201)
Q Consensus 8 ~~~dpY~~L---Gv~~~As~eeIk~A~~~l~~~~~~D~~~~--~~Ie~AYD~Ilm~~l~~R~~Gki~-v~~~ir~~-~~~ 80 (201)
+-.|||+.| =+|..++++-+.+|..+|.++|. +.+.. +..++-.+.|-.--|.++|..+|. ..+.+... ..+
T Consensus 25 ~~~~pf~lLva~iLSaqttD~~vn~at~~Lf~~~~-t~e~l~~a~~~~l~~~I~~iGlyr~KAk~I~~~~~~l~e~~~g~ 103 (211)
T COG0177 25 DFKDPFELLVAVILSAQTTDEVVNKATPALFKRYP-TPEDLLNADEEELEELIKSIGLYRNKAKNIKELARILLEKFGGE 103 (211)
T ss_pred CcCCcHHHHHHHHHhccCchHHHHHHHHHHHHHcC-CHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 346999988 37999999999999999999998 33333 355556667777788888876654 33333322 334
Q ss_pred CChhHhhhh
Q 028940 81 SPPWFKNLL 89 (201)
Q Consensus 81 ~p~w~~~~~ 89 (201)
.|.-...++
T Consensus 104 vP~~~~eL~ 112 (211)
T COG0177 104 VPDTREELL 112 (211)
T ss_pred CCchHHHHH
Confidence 455555555
No 158
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=24.57 E-value=3.2e+02 Score=22.52 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHHH
Q 028940 144 SLARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAY 190 (201)
Q Consensus 144 ~lgra~ll~~g~L~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~~~ 190 (201)
-.-|+..+++..+.+|.+.|+.-....-+ -.-.|.|-++.|+++.
T Consensus 124 ~~~~~~~~gf~~lti~l~~G~~wa~~~wG--~~w~wDpk~~~sli~W 168 (214)
T PF01578_consen 124 LSYRLILIGFILLTIGLITGAIWAKDSWG--SYWSWDPKEVWSLITW 168 (214)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHhcc--chhHHhHHHHHHHHHH
Confidence 34688999999999999999976532111 1113446666665543
No 159
>COG0730 Predicted permeases [General function prediction only]
Probab=24.48 E-value=3.2e+02 Score=23.13 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccc
Q 028940 146 ARASIIGLGALASGWILGSVVVPMIP 171 (201)
Q Consensus 146 gra~ll~~g~L~~G~~~Gs~l~~~v~ 171 (201)
.|....-..+-++|..+|+.+...++
T Consensus 73 ~~~~~~l~~~~~~G~~lG~~l~~~~~ 98 (258)
T COG0730 73 WKLALILLLGALIGAFLGALLALLLP 98 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333333344788888877755433
No 160
>TIGR03580 EF_0832 conserved hypothetical protein EF_0832/AHA_3913. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.45 E-value=85 Score=27.18 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC-cccHHHHHHHHHHHHHHHhhhcCC
Q 028940 143 KSLARASIIGLGALASGWILGSVVVPMIPTVLIHP-TWTLELLTSLVAYFFLFLACTFFK 201 (201)
Q Consensus 143 ~~lgra~ll~~g~L~~G~~~Gs~l~~~v~~~~l~~-~~s~e~~~sl~~~v~Lw~~s~fLr 201 (201)
..++-.++=+++-++-|-.+=+++..+++...+.. -|+--.=+-+.+.++||+.+.|.|
T Consensus 146 sG~w~Ti~GGla~liMGNavPG~VLGIlIGkgvdesGwnk~tk~m~~~ii~LFvlsgffR 205 (233)
T TIGR03580 146 SGFWGTIFGGLAQLIMGNAVPGVVLGILIGKGVDDSGWTKVTKGMLGAIILLFILSGFFR 205 (233)
T ss_pred cccHHHHHhhHHHHHhcCCCcceeeeeeecccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555566666666666666666665555443 454445556778889999999887
No 161
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=24.38 E-value=1.5e+02 Score=28.07 Aligned_cols=14 Identities=7% Similarity=0.437 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 028940 182 ELLTSLVAYFFLFL 195 (201)
Q Consensus 182 e~~~sl~~~v~Lw~ 195 (201)
+.+..+..+++-++
T Consensus 93 ~~~i~~~vFi~~~~ 106 (406)
T PF11744_consen 93 PIVIGISVFIIGFI 106 (406)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444443
No 162
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=24.13 E-value=3.3e+02 Score=25.80 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHHHHhhhh
Q 028940 103 RLFLFAFMGGWSIMN--SAEGGPAFQVAVSLAACIYFLNEKT 142 (201)
Q Consensus 103 ~~~~~~~l~~~~l~~--~~~~~~~lqlal~~~a~iyfl~~k~ 142 (201)
...+||..+.-++-. -+.-.|++.+++++.+..|+.-||+
T Consensus 109 ~~IIyg~~a~~SI~~LF~aGi~PGlLl~~~lm~~~~~~a~~~ 150 (379)
T COG1593 109 PFIIYGVAAGVSIGKLFVAGIVPGLLLTLALMVVAYIVARKR 150 (379)
T ss_pred hHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556677666543322 2223499999999999999998874
No 163
>PRK14787 lipoprotein signal peptidase; Provisional
Probab=24.08 E-value=1.1e+02 Score=25.05 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=5.9
Q ss_pred HHHHHhhhhhHHHH
Q 028940 134 CIYFLNEKTKSLAR 147 (201)
Q Consensus 134 ~iyfl~~k~~~lgr 147 (201)
.+|+..+|.++...
T Consensus 74 ~~~~~~~~~~~~~~ 87 (159)
T PRK14787 74 LWYVLRSKNRTPLF 87 (159)
T ss_pred HHHHHHccccchHH
Confidence 34444444443443
No 164
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=24.06 E-value=3.3e+02 Score=23.08 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=31.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccc-cCCCcccHHHHHHHHHHHHHHH
Q 028940 135 IYFLNEKTKSLARASIIGLGALASGWILGSVVVPMIPTV-LIHPTWTLELLTSLVAYFFLFL 195 (201)
Q Consensus 135 iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~l~~~v~~~-~l~~~~s~e~~~sl~~~v~Lw~ 195 (201)
-|.+.+|.+..+-.+++++.-- .++.-++.|+.|.. .+. .++-+.++|.....+||=
T Consensus 88 Y~~~l~k~~g~W~Gi~YG~~~W---~ivF~~lnP~fp~~~~~~-~l~~nTiiT~~CiyiLyG 145 (173)
T PF11085_consen 88 YYALLKKFKGPWPGILYGLAWW---AIVFFVLNPIFPMIKPVT-ELDWNTIITTLCIYILYG 145 (173)
T ss_pred HHHHHHHhcccchHHHHHHHHH---HHHHHHhcccccCChhhh-hCchhHHHHHHHHHHHHH
Confidence 3456678887776666644321 12222333433311 011 345689999998888873
No 165
>PRK08156 type III secretion system protein SpaS; Validated
Probab=23.75 E-value=5e+02 Score=24.26 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=14.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHh
Q 028940 93 ELPPKDVIFRRLFLFAFMGGWSIM 116 (201)
Q Consensus 93 ~~Ps~~~l~~~~~~~~~l~~~~l~ 116 (201)
+.|..+|+...+.+.++++++.++
T Consensus 21 qV~kS~el~~a~~ll~~~~~l~~~ 44 (361)
T PRK08156 21 QSFKSKDLITAVVLLGGIAYLVSF 44 (361)
T ss_pred CCCchHhHHHHHHHHHHHHHHHHH
Confidence 467777777766666655555444
No 166
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=23.73 E-value=1.6e+02 Score=19.39 Aligned_cols=16 Identities=13% Similarity=0.484 Sum_probs=8.1
Q ss_pred HHHHHHHH-HHHHHHhh
Q 028940 182 ELLTSLVA-YFFLFLAC 197 (201)
Q Consensus 182 e~~~sl~~-~v~Lw~~s 197 (201)
+.+.|++. .++||+..
T Consensus 28 ~~i~aviGAiill~i~~ 44 (48)
T PF04226_consen 28 SFIVAVIGAIILLFIYR 44 (48)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555554 44555543
No 167
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.63 E-value=2.2e+02 Score=22.00 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 028940 147 RASIIGLGALASGWILGSVVVP 168 (201)
Q Consensus 147 ra~ll~~g~L~~G~~~Gs~l~~ 168 (201)
|.|++++++++++|++...+..
T Consensus 4 ~~Fi~~~~~~~~~Wi~~N~~~~ 25 (108)
T PF06210_consen 4 WTFIIIFTVFLAVWILLNILAP 25 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 6789999999999998887743
No 168
>PRK12438 hypothetical protein; Provisional
Probab=23.62 E-value=3.8e+02 Score=28.55 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 028940 126 QVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSVVVPMI 170 (201)
Q Consensus 126 qlal~~~a~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~l~~~v 170 (201)
..++++.+.+.|+.-..++-+|-.+++++.+++.+++.+.+.+.+
T Consensus 263 L~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~P~~ 307 (991)
T PRK12438 263 LVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLWPLL 307 (991)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 445565666666655555667777778888888888777665554
No 169
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=23.46 E-value=3.7e+02 Score=21.09 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcC--CCCchHHHH------HHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHh
Q 028940 99 VIFRRLFLFAFMGGWSIMNSA--EGGPAFQVA------VSLAACIYFLN-EKTKSLARASIIGLGALASGWILG 163 (201)
Q Consensus 99 ~l~~~~~~~~~l~~~~l~~~~--~~~~~lqla------l~~~a~iyfl~-~k~~~lgra~ll~~g~L~~G~~~G 163 (201)
.+..-++++.++++.+++..+ +=++...++ +++..+.+.+. ++.+.+++++++ ++++.+|..++
T Consensus 35 ~l~~lGall~~~gii~fvA~nW~~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~l~ga~ia 107 (145)
T PF09925_consen 35 ILLYLGALLLGLGIILFVAANWDDIPRLAKLGLLLALLLLSYVGGFWLWRRRSPRLAEALLL-LGAVLFGALIA 107 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH-HHHHHHHHHHH
Confidence 345555565666665555432 111222222 22333444544 444555555554 55555554443
No 170
>PF07784 DUF1622: Protein of unknown function (DUF1622); InterPro: IPR012427 This is a family of 14 highly conserved sequences, from hypothetical proteins expressed by both bacterial and archaeal species.
Probab=23.46 E-value=3e+02 Score=20.03 Aligned_cols=43 Identities=33% Similarity=0.409 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHHHHHH
Q 028940 140 EKTKSLARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFFL 193 (201)
Q Consensus 140 ~k~~~lgra~ll~~g~L~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~~~v~L 193 (201)
+-+..+|+++++++-.++.+-++.|.+.| |.|.+.-+.+.+++
T Consensus 23 ~iR~~lg~~l~lgLEfllaAdIl~Tv~~p-----------t~~~l~~La~Iv~I 65 (77)
T PF07784_consen 23 RIRLELGRSLLLGLEFLLAADILRTVIAP-----------TWEDLGILAAIVLI 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHH
Confidence 34688999999999999999999998743 23555555555444
No 171
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=23.36 E-value=84 Score=24.89 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=25.3
Q ss_pred HHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhh
Q 028940 33 FLLEQYTGHERSEESIEAAFEKLLMTSFRRRKK 65 (201)
Q Consensus 33 ~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~ 65 (201)
.+.++.+-+++..+.+.+||+.++.-|++...+
T Consensus 70 ~L~~~g~l~~~~~~~l~~A~~~l~~lRl~~q~~ 102 (145)
T PF10335_consen 70 ALAEAGVLSPDDAEDLIEAFEFLLGLRLRHQLE 102 (145)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667888999999999999888877643
No 172
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=23.35 E-value=2.4e+02 Score=18.89 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Q 028940 125 FQVAVSLAACIYFLNE-KTKSLARASIIGLGALASGWIL 162 (201)
Q Consensus 125 lqlal~~~a~iyfl~~-k~~~lgra~ll~~g~L~~G~~~ 162 (201)
+.=++|+..|+|.+-+ .....-|-..+ +++|.++
T Consensus 8 ~~P~~si~~ni~Lm~~L~~~twirf~iW----l~iGl~i 42 (51)
T PF13906_consen 8 FLPALSILINIYLMAQLSALTWIRFGIW----LAIGLVI 42 (51)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHH----HHHHHHH
Confidence 3345678888888877 35666666666 5555544
No 173
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=23.34 E-value=1.7e+02 Score=20.89 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHH
Q 028940 24 EEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 55 (201)
Q Consensus 24 ~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~I 55 (201)
.+.|++..++.+.+|+.+. ..++.++|.|
T Consensus 12 ~~~i~~~~~~~i~~y~~~~---~~~~~~~d~l 40 (100)
T cd03154 12 ENELKEKNTKLLSLLGQNA---KSVKKSLEKF 40 (100)
T ss_pred HHHHHHHHHHHHHHcCCCh---HHHHHHHHHH
Confidence 3556667777777887652 3467778774
No 174
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=23.15 E-value=2.1e+02 Score=27.48 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 028940 130 SLAACIYFLNEKTKSLARASIIGLGALASGWILGSVV 166 (201)
Q Consensus 130 ~~~a~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~l 166 (201)
.+...++.++||..+|++.+++ +|+.|.++|-.+
T Consensus 15 ~l~~~l~~~~~k~~slskrV~~---aL~lG~vfG~~L 48 (458)
T COG1823 15 VLLLALAQMRRKQISLSKRVLI---ALVLGVVFGLAL 48 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3455677888999999999887 567777777766
No 175
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=23.13 E-value=2.7e+02 Score=20.70 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhc--cccccccCCCcccHHHHHHHHHHHHHHHhhhcC
Q 028940 139 NEKTKSLARASIIGLGALASGWILGSVVV--PMIPTVLIHPTWTLELLTSLVAYFFLFLACTFF 200 (201)
Q Consensus 139 ~~k~~~lgra~ll~~g~L~~G~~~Gs~l~--~~v~~~~l~~~~s~e~~~sl~~~v~Lw~~s~fL 200 (201)
.++.++-.+++++.+++++..++..+++. +-+| .+++ ..| ++.+ ....|++..+|
T Consensus 12 ~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iP--ll~~--llE-lvGl--gyt~wF~~ryL 68 (90)
T PF14159_consen 12 FDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIP--LLPG--LLE-LVGL--GYTGWFVYRYL 68 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--chHH--HHH-HHHH--HHHhHHHHHHH
Confidence 45667777888887787888888777772 3333 3443 122 2333 24667766554
No 176
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=23.07 E-value=3.6e+02 Score=20.92 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=21.8
Q ss_pred HHHHh--hhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 028940 135 IYFLN--EKTKSLARASIIGLGALASGWILGSVV 166 (201)
Q Consensus 135 iyfl~--~k~~~lgra~ll~~g~L~~G~~~Gs~l 166 (201)
+|||+ ++.+.-+.-..+.|+.+++-.+++|.+
T Consensus 63 ~~FLHl~~~~~~~wn~~al~Ft~~i~~iiv~GSl 96 (109)
T PRK10582 63 VCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSI 96 (109)
T ss_pred HHHhcccCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 68877 345556666777777777777776655
No 177
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=23.06 E-value=4.1e+02 Score=22.50 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=35.8
Q ss_pred HHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHhhhhc-cccccccCCCcccHHHHHHHHHHH
Q 028940 131 LAACIYFLNEK-TKSLARASIIGLGALASGWILGSVVV-PMIPTVLIHPTWTLELLTSLVAYF 191 (201)
Q Consensus 131 ~~a~iyfl~~k-~~~lgra~ll~~g~L~~G~~~Gs~l~-~~v~~~~l~~~~s~e~~~sl~~~v 191 (201)
+..+.+.=++| .+.++++++.=+.|+++|.++.+.+- +++| ....+. -...+.+.+.+.
T Consensus 128 ~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p-~~~s~~-~~~sl~~~i~lw 188 (194)
T PF11833_consen 128 CIYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVP-GPWSPE-QLVSLFTYILLW 188 (194)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC-CCCCHH-HHHHHHHHHHHH
Confidence 34455554554 67888888877888888888887774 4444 233321 345555555544
No 178
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=22.83 E-value=1.5e+02 Score=25.12 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhhhccc
Q 028940 149 SIIGLGALASGWILGSVVVPM 169 (201)
Q Consensus 149 ~ll~~g~L~~G~~~Gs~l~~~ 169 (201)
.+-+++|-.+||++|..+.+.
T Consensus 81 g~~t~a~g~lG~L~GP~~G~~ 101 (173)
T PF08566_consen 81 GLATLACGALGWLVGPSLGNQ 101 (173)
T ss_pred HHHHHHHHHHHHHhcchHHHH
Confidence 344667778888888777543
No 179
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=22.78 E-value=3.7e+02 Score=27.78 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=42.2
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHhh-------cC------C---CC----chH--HHHHHHHHHHHHHhhhhhHHHHHHH
Q 028940 93 ELPPKDVIFRRLFLFAFMGGWSIMN-------SA------E---GG----PAF--QVAVSLAACIYFLNEKTKSLARASI 150 (201)
Q Consensus 93 ~~Ps~~~l~~~~~~~~~l~~~~l~~-------~~------~---~~----~~l--qlal~~~a~iyfl~~k~~~lgra~l 150 (201)
.......+..-++++.++-+|..+. +. + |. |.. ..++++.+.+.|+..-.++-+|..+
T Consensus 196 ~~~a~~hL~~L~~~~~l~~a~~y~L~ry~Ll~s~~g~v~GagYtDv~a~Lp~~~il~~i~~~~A~~~~~~~~~~~~~~~~ 275 (774)
T PF03699_consen 196 SRAARRHLSILLALFFLLKAVGYWLDRYELLYSQRGVVYGAGYTDVHATLPAYTILAVIALLCAVLFFINIFRRNWRLPA 275 (774)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhHeecCCCeEeCCCceeeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 3444556666666666666665433 11 1 11 333 2344444455555555566677788
Q ss_pred HHHHHHHHHHHHhhhhccc
Q 028940 151 IGLGALASGWILGSVVVPM 169 (201)
Q Consensus 151 l~~g~L~~G~~~Gs~l~~~ 169 (201)
++++.+++.+++++.+.+.
T Consensus 276 ~~~~~~~v~~i~~~~~~p~ 294 (774)
T PF03699_consen 276 IGLGLLVVSSILLGGIYPA 294 (774)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888876665555443
No 180
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=22.65 E-value=1.2e+02 Score=22.23 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Q 028940 143 KSLARASIIGLGALASGWILGSVV 166 (201)
Q Consensus 143 ~~lgra~ll~~g~L~~G~~~Gs~l 166 (201)
+-+.+-+++.+.++++|+++|...
T Consensus 7 ~~l~~l~~~~l~~~lvG~~~g~~~ 30 (90)
T PF11808_consen 7 RELWRLLLLLLAAALVGWLFGHLW 30 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345666667777777887777764
No 181
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=1.9e+02 Score=26.53 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=31.8
Q ss_pred hHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHHHHHHHH
Q 028940 124 AFQVAVSLAA--CIYFLNEKTKSLARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFFLFL 195 (201)
Q Consensus 124 ~lqlal~~~a--~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~~~v~Lw~ 195 (201)
++..+.+++. ++|.+--|++.-- ..++|.+.|+.= +++-=....++.+.+-+. ++..+++|-
T Consensus 125 a~l~~~gi~~Yv~vYT~~lKR~T~~--------NiviGg~aGa~P-pliGwaAvtg~~~~~a~~-Lf~IiF~Wt 188 (304)
T COG0109 125 AVLGLFGIFFYVVVYTLWLKRRTPQ--------NIVIGGFAGAMP-PLIGWAAVTGSISLGAIL-LFAIIFLWT 188 (304)
T ss_pred HHHHHHHHHHHhhhhhhhccCCccc--------ceeeeecccccc-ccceeeeeeCCCCchHHH-HHHHHHHhc
Confidence 4444444443 3666655654432 144555555532 222112344555556655 888888884
No 182
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=22.39 E-value=3.6e+02 Score=22.21 Aligned_cols=51 Identities=18% Similarity=-0.007 Sum_probs=28.5
Q ss_pred hhh-hHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHHHHHHHHhhh
Q 028940 140 EKT-KSLARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFFLFLACT 198 (201)
Q Consensus 140 ~k~-~~lgra~ll~~g~L~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~~~v~Lw~~s~ 198 (201)
||. ++.+..++..+|.-++|.++++-++..+-. . +.-.+++.|+.-|+.|+
T Consensus 87 rk~~~~~~a~~ge~igt~iig~~~s~pi~~~~~g--~------~~~~~~~~~~~~f~~st 138 (160)
T TIGR02359 87 RFGRKHYWASLGEILGTGIIGSLLAYPVAAWLLG--S------SENFALFPITLGFIVST 138 (160)
T ss_pred HHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcC--C------cchhHHHHHHHHHHHHH
Confidence 443 344556777777777777777766443221 1 11145666666666655
No 183
>PF14188 DUF4311: Domain of unknown function (DUF4311)
Probab=22.38 E-value=98 Score=26.56 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC-cccHHHHHHHHHHHHHHHhhhcCC
Q 028940 143 KSLARASIIGLGALASGWILGSVVVPMIPTVLIHP-TWTLELLTSLVAYFFLFLACTFFK 201 (201)
Q Consensus 143 ~~lgra~ll~~g~L~~G~~~Gs~l~~~v~~~~l~~-~~s~e~~~sl~~~v~Lw~~s~fLr 201 (201)
..++-.++=+++-++-|-.+=+++..+++...+.. -|+--.=+-+.+.++||+.+.|.|
T Consensus 147 tG~W~TvlGGla~liMGNAvPG~VLGILIGkgvdd~Gwn~~tk~m~~~vi~LFils~ffR 206 (213)
T PF14188_consen 147 TGFWGTVLGGLAHLIMGNAVPGIVLGILIGKGVDDSGWNRITKTMLAAVILLFILSGFFR 206 (213)
T ss_pred cccHHHHhhhHHHHHhcCCCcceeeEeeecccccccchHHHHHHHHHHHHHHHHHHHHHc
Confidence 33455555566666666666666666655444432 454445556778889999999987
No 184
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=22.16 E-value=78 Score=24.59 Aligned_cols=27 Identities=22% Similarity=0.067 Sum_probs=19.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCH
Q 028940 16 LGISPYASEEEIWGSRNFLLEQYTGHE 42 (201)
Q Consensus 16 LGv~~~As~eeIk~A~~~l~~~~~~D~ 42 (201)
.|..++++.++|+++.++.+++++-+.
T Consensus 6 iGcrr~~~~~~i~~ai~~~l~~~~~~~ 32 (121)
T PF01890_consen 6 IGCRRGAPAEEIEEAIEQALAEAGLSP 32 (121)
T ss_dssp EEE-SS--HHHHHHHHHHHHHHCT--G
T ss_pred eCcCCCCCHHHHHHHHHHHHHHcCCCh
Confidence 577899999999999999999987544
No 185
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=22.05 E-value=3.5e+02 Score=28.14 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 028940 145 LARASII 151 (201)
Q Consensus 145 lgra~ll 151 (201)
+.-++++
T Consensus 38 Ls~~~v~ 44 (810)
T TIGR00844 38 IGESMVA 44 (810)
T ss_pred CcHHHHH
Confidence 3333333
No 186
>PRK10720 uracil transporter; Provisional
Probab=21.98 E-value=6.6e+02 Score=23.55 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 028940 123 PAFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSVV 166 (201)
Q Consensus 123 ~~lqlal~~~a~iyfl~~k~~~lgra~ll~~g~L~~G~~~Gs~l 166 (201)
+.+.+++....++.++++..|++.|..-. +.++++|++++.++
T Consensus 156 ~~~~lalv~l~iil~~~~~~kg~~~~~~i-LigIvvG~ila~~l 198 (428)
T PRK10720 156 KTIIISMVTLAVTVLGSVLFRGFLAIIPI-LIGVLVGYALSFAM 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHhHH-HHHHHHHHHHHHHh
Confidence 44555554455555577777777774443 56677777776554
No 187
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=21.92 E-value=1.9e+02 Score=21.60 Aligned_cols=29 Identities=3% Similarity=0.031 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHH
Q 028940 23 SEEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 55 (201)
Q Consensus 23 s~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~I 55 (201)
-.++|++..++.+.+|+.| ..+..++|.|
T Consensus 7 v~~~i~~~l~~~i~~y~~~----~~~~~~~d~l 35 (119)
T cd03158 7 TIDLLEENIRKAIVHYYDD----LDLQNIIDFV 35 (119)
T ss_pred HHHHHHHHHHHHHHHHccC----HHHHHHHHHH
Confidence 3567788888888888765 2477888874
No 188
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.83 E-value=1.6e+02 Score=25.81 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=17.7
Q ss_pred HHHHHhhhh-hHHHHHHHHHH-HHHHHHHHHhhhh
Q 028940 134 CIYFLNEKT-KSLARASIIGL-GALASGWILGSVV 166 (201)
Q Consensus 134 ~iyfl~~k~-~~lgra~ll~~-g~L~~G~~~Gs~l 166 (201)
-+|.+.+|. ++++|..+.+| +.++++.++|-++
T Consensus 15 q~y~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~ 49 (224)
T PF13829_consen 15 QAYKMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLF 49 (224)
T ss_pred HHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777664 66666666555 3344444444333
No 189
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=21.82 E-value=1.2e+02 Score=23.23 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=26.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGH 41 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D 41 (201)
++..+.++..++.+.|++++..++.+++.+.+
T Consensus 27 ~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~ 58 (116)
T TIGR00824 27 QNNVGAVPFVPGENAETLQEKYNAALADLDTE 58 (116)
T ss_pred cCCeEEEEcCCCcCHHHHHHHHHHHHHhcCCC
Confidence 45588899999999999999999999888644
No 190
>cd01067 globin_like superfamily containing globins and truncated hemoglobins
Probab=21.76 E-value=1.8e+02 Score=21.67 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=25.6
Q ss_pred cccCCC-CCCCHHHHHHHHHHHHHHhCC-CHhHHHHHHHHHHH
Q 028940 14 KRLGIS-PYASEEEIWGSRNFLLEQYTG-HERSEESIEAAFEK 54 (201)
Q Consensus 14 ~~LGv~-~~As~eeIk~A~~~l~~~~~~-D~~~~~~Ie~AYD~ 54 (201)
..+||+ ....|+.+++.....++++.+ +++..++..++|+.
T Consensus 72 ~~~gi~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~Aw~~~~~~ 114 (117)
T cd01067 72 KRDHVHMPPEVFTAFWKLLEEYLGKKTTLDEPTIQAWHEIGRE 114 (117)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345666 666777777777777766665 55555555555554
No 191
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=21.71 E-value=5.4e+02 Score=22.42 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=8.6
Q ss_pred HhCCCHhHHHHHHHHHH
Q 028940 37 QYTGHERSEESIEAAFE 53 (201)
Q Consensus 37 ~~~~D~~~~~~Ie~AYD 53 (201)
+..||.++.+.+.+-|.
T Consensus 94 ~~~~~~E~~e~l~~~~~ 110 (241)
T cd02435 94 EASPSTEQEEIILYDLV 110 (241)
T ss_pred hhCcHHHHHHHHHHHHH
Confidence 34456555553454444
No 192
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.61 E-value=2.4e+02 Score=28.72 Aligned_cols=7 Identities=14% Similarity=0.126 Sum_probs=2.7
Q ss_pred cCCCCch
Q 028940 118 SAEGGPA 124 (201)
Q Consensus 118 ~~~~~~~ 124 (201)
+.-.+|+
T Consensus 42 ~~~~~~~ 48 (1092)
T PRK09776 42 AGRMWPG 48 (1092)
T ss_pred chhhhHH
Confidence 3333344
No 193
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=21.58 E-value=4.7e+02 Score=26.39 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=33.7
Q ss_pred CCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHHHHHHHHhh
Q 028940 120 EGGPAFQVAVSLAACIYFLNEKTKSLARASIIG-LGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFFLFLAC 197 (201)
Q Consensus 120 ~~~~~lqlal~~~a~iyfl~~k~~~lgra~ll~-~g~L~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~~~v~Lw~~s 197 (201)
.+|....+..++.+|++--.+.=....+.++++ +.++.+|.+..=.+.|. +.+ +.+.+.-..+.+++|++.
T Consensus 376 ~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vLP~-----i~~--~f~lL~laLap~~~~~g~ 447 (652)
T PRK10631 376 TSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVIIPN-----TQQ--SMLLLCISLGVLGFFIGI 447 (652)
T ss_pred chHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccc--cHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444445555555543 24444444443333222 111 345555555555556543
No 194
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=21.57 E-value=1e+02 Score=24.09 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.5
Q ss_pred HhHHHHHHHHHHHHHhhHhhhhhh
Q 028940 42 ERSEESIEAAFEKLLMTSFRRRKK 65 (201)
Q Consensus 42 ~~~~~~Ie~AYD~Ilm~~l~~R~~ 65 (201)
.+++++-|+|||++-.+.+.+|-.
T Consensus 65 ~~Q~k~Ye~a~~~~~~~~lqkRle 88 (104)
T PF11460_consen 65 MQQRKDYEEAVDQLTNEELQKRLE 88 (104)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 478889999999999998888864
No 195
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=21.56 E-value=1.2e+02 Score=23.03 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=27.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGH 41 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D 41 (201)
++.+..++..++.+.++.++..++.++++..+
T Consensus 26 ~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 57 (122)
T cd00006 26 QENVEAIDFPPGESPDDLLEKIKAALAELDSG 57 (122)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 46888999999999999999999988887543
No 196
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=21.55 E-value=2e+02 Score=26.41 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 028940 145 LARASIIGLGALASGWILGSVV 166 (201)
Q Consensus 145 lgra~ll~~g~L~~G~~~Gs~l 166 (201)
+.-++++++.|.++|.++|.++
T Consensus 309 l~Ea~ll~~iG~~~G~~lg~~~ 330 (380)
T TIGR01185 309 LQEALLLACLGYLPGWGFAILL 330 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999988765
No 197
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=21.50 E-value=4e+02 Score=20.79 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 028940 144 SLARASIIGLGALASGWILGSVV 166 (201)
Q Consensus 144 ~lgra~ll~~g~L~~G~~~Gs~l 166 (201)
++++++..++...++|.++.+..
T Consensus 62 sf~~a~~~g~~~~~ia~li~~v~ 84 (163)
T PF13858_consen 62 SFGQAFKVGFLISLIAGLISAVF 84 (163)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999998888888877
No 198
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=21.40 E-value=2.8e+02 Score=24.90 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=16.0
Q ss_pred ccCCChhHhhhhccccCCChhHHH
Q 028940 78 VEESPPWFKNLLNFVELPPKDVIF 101 (201)
Q Consensus 78 ~~~~p~w~~~~~~~~~~Ps~~~l~ 101 (201)
++..|+|..+.- +..+|-...+.
T Consensus 305 d~~lP~~~~~~~-k~~~P~~a~~~ 327 (426)
T PF13520_consen 305 DGVLPKWFAKVN-KFGTPYNAIIL 327 (426)
T ss_dssp TTSSSGGGGTTS-SSSSCHHHHHH
T ss_pred ccchhhhhhhcc-ccCCceeeehh
Confidence 456689987776 88888665443
No 199
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=21.37 E-value=2.1e+02 Score=21.13 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHh------hhhhHHHHHHHHH
Q 028940 126 QVAVSLAACIYFLN------EKTKSLARASIIG 152 (201)
Q Consensus 126 qlal~~~a~iyfl~------~k~~~lgra~ll~ 152 (201)
.+++|++...||.- ++.+++.|-++++
T Consensus 23 ll~iGl~fta~Ffiyevts~k~~r~i~kEl~~a 55 (77)
T PF05251_consen 23 LLAIGLFFTAWFFIYEVTSTKKTRSIAKELLIA 55 (77)
T ss_pred HHHHHHHHHHHHHHHhhhcCcccccHHHHHHHH
Confidence 35666666666653 4566677776664
No 200
>PHA00024 IX minor coat protein
Probab=21.15 E-value=1.2e+02 Score=18.94 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 028940 149 SIIGLGALASGWILGSVV 166 (201)
Q Consensus 149 ~ll~~g~L~~G~~~Gs~l 166 (201)
+..-+|+.++||.+|..+
T Consensus 5 l~~ffgA~ilG~~l~~~I 22 (33)
T PHA00024 5 LGYFFGAYILGWALFYGI 22 (33)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455678899999988766
No 201
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=21.14 E-value=3.5e+02 Score=20.61 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhhccccccccCCC--cccHHHHHHHHHHHHHHHhhh
Q 028940 151 IGLGALASGWILGSVVVPMIPTVLIHP--TWTLELLTSLVAYFFLFLACT 198 (201)
Q Consensus 151 l~~g~L~~G~~~Gs~l~~~v~~~~l~~--~~s~e~~~sl~~~v~Lw~~s~ 198 (201)
+++.++++|.+++....+.+.+. +.+ ....+.+....+++++++.+.
T Consensus 26 ~~l~~~i~a~~~a~~~~~~~~~~-l~~~~~~~~~~~~~~iaf~~~f~~~~ 74 (146)
T PF02674_consen 26 FSLIGLIVALFVAFLFYPPLAPF-LSNYFSSLSPPFANIIAFIILFVLVY 74 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554333221 111 012356666666766666553
No 202
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=21.09 E-value=1.3e+02 Score=22.96 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=29.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCH------------------------hHHHHHHHHHHHH
Q 028940 11 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE------------------------RSEESIEAAFEKL 55 (201)
Q Consensus 11 dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~------------------------~~~~~Ie~AYD~I 55 (201)
=||++.|....+=.|+|- +++++|.||. ..++++|++|..+
T Consensus 16 F~~KVmG~a~~~l~~~vv----~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL 80 (90)
T COG2921 16 FTYKVMGAAGPELEDQVV----EVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYREL 80 (90)
T ss_pred ceeeehcccchhHHHHHH----HHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHH
Confidence 489999987766555554 5677777653 3568999999875
No 203
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=20.69 E-value=72 Score=29.39 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHHHHHHHHhhhc
Q 028940 151 IGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFFLFLACTF 199 (201)
Q Consensus 151 l~~g~L~~G~~~Gs~l~~~v~~~~l~~~~s~e~~~sl~~~v~Lw~~s~f 199 (201)
.+|.++.+|.+.+|.+.+++.....| +-.+.+.+++|=+.|+|
T Consensus 193 MAFVs~LIGiI~~sGiGd~iA~~l~P------LAg~~~GLv~l~~ICs~ 235 (331)
T TIGR00825 193 MAFVSALIGIIMASGLGDWIAHGLVP------LAGNPIGLVILALICSF 235 (331)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhccc------cccChHHHHHHHHHHcc
Confidence 46778889999999887776433222 23345566666666664
No 204
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=20.06 E-value=2e+02 Score=20.72 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHH
Q 028940 24 EEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 55 (201)
Q Consensus 24 ~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~I 55 (201)
.+.|++..++.+.+|+.++ .+..++|.|
T Consensus 9 ~~~~~~~~~~~~~~y~~~~----~~~~~~d~i 36 (105)
T cd03163 9 EDELNPSIDKVFNKYNGTN----AESRAVDYL 36 (105)
T ss_pred HHHHHHHHHHHHHHhcCCc----HHHHHHHHH
Confidence 4567777777777787643 345777774
Done!