Query 028940
Match_columns 201
No_of_seqs 172 out of 584
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ys8_A RAB-related GTP-binding 99.5 4.5E-14 1.5E-18 104.0 4.7 56 8-63 25-87 (90)
2 2guz_A Mitochondrial import in 99.4 5.7E-14 1.9E-18 99.4 3.9 57 5-61 9-70 (71)
3 2dn9_A DNAJ homolog subfamily 99.4 3.8E-13 1.3E-17 95.9 7.3 57 6-62 3-67 (79)
4 2ctr_A DNAJ homolog subfamily 99.4 4.8E-13 1.7E-17 97.7 7.1 58 6-63 3-67 (88)
5 2ctp_A DNAJ homolog subfamily 99.4 2.7E-13 9.1E-18 96.7 5.5 56 6-61 3-65 (78)
6 2cug_A Mkiaa0962 protein; DNAJ 99.4 6.5E-13 2.2E-17 97.1 6.8 56 8-63 15-77 (88)
7 1wjz_A 1700030A21RIK protein; 99.4 1.8E-13 6E-18 100.6 3.5 57 5-61 11-81 (94)
8 2ej7_A HCG3 gene; HCG3 protein 99.4 4.3E-13 1.5E-17 96.3 5.2 56 6-61 5-69 (82)
9 1hdj_A Human HSP40, HDJ-1; mol 99.4 5.5E-13 1.9E-17 94.9 5.6 54 9-62 2-62 (77)
10 2och_A Hypothetical protein DN 99.4 7.8E-13 2.7E-17 93.3 6.2 55 7-61 5-64 (73)
11 2yua_A Williams-beuren syndrom 99.4 9E-13 3.1E-17 98.4 6.7 59 5-63 12-78 (99)
12 2o37_A Protein SIS1; HSP40, J- 99.4 6.7E-13 2.3E-17 97.8 5.8 56 6-61 4-64 (92)
13 2dmx_A DNAJ homolog subfamily 99.3 1.4E-12 4.8E-17 95.7 5.7 57 7-63 6-71 (92)
14 2ctw_A DNAJ homolog subfamily 99.3 2.5E-12 8.5E-17 97.7 6.4 57 7-63 14-78 (109)
15 2ctq_A DNAJ homolog subfamily 99.3 2.8E-12 9.6E-17 97.8 6.6 58 5-62 15-80 (112)
16 1faf_A Large T antigen; J doma 99.3 9.8E-13 3.4E-17 94.9 3.4 57 7-63 8-70 (79)
17 2lgw_A DNAJ homolog subfamily 99.3 5.8E-12 2E-16 94.4 6.5 53 10-62 2-63 (99)
18 1iur_A KIAA0730 protein; DNAJ 99.2 2E-12 6.9E-17 95.4 2.7 55 6-60 12-75 (88)
19 2qsa_A DNAJ homolog DNJ-2; J-d 99.2 6.9E-12 2.4E-16 94.8 5.7 55 8-62 13-79 (109)
20 1bq0_A DNAJ, HSP40; chaperone, 99.2 1.6E-12 5.5E-17 97.5 1.8 55 9-63 2-64 (103)
21 2l6l_A DNAJ homolog subfamily 99.2 9E-12 3.1E-16 99.4 5.0 58 4-61 4-75 (155)
22 3apq_A DNAJ homolog subfamily 99.2 2.8E-11 9.7E-16 98.5 5.5 54 10-63 2-63 (210)
23 2qwo_B Putative tyrosine-prote 99.1 3.4E-11 1.2E-15 89.9 4.2 48 10-57 33-91 (92)
24 1gh6_A Large T antigen; tumor 99.1 1.2E-11 4.1E-16 95.3 1.3 57 8-64 6-68 (114)
25 3lz8_A Putative chaperone DNAJ 99.1 1.2E-11 4.2E-16 110.3 0.0 53 7-59 25-84 (329)
26 2pf4_E Small T antigen; PP2A, 99.1 2E-11 6.7E-16 100.7 0.9 59 5-63 6-70 (174)
27 3hho_A CO-chaperone protein HS 99.0 3.5E-10 1.2E-14 92.5 6.0 55 8-62 2-71 (174)
28 2guz_B Mitochondrial import in 99.0 3E-10 1E-14 79.8 4.2 52 7-58 1-59 (65)
29 1n4c_A Auxilin; four helix bun 99.0 3.7E-10 1.3E-14 93.7 4.6 52 10-61 117-179 (182)
30 3ag7_A Putative uncharacterize 98.9 4.9E-10 1.7E-14 85.2 4.3 48 9-57 40-102 (106)
31 1fpo_A HSC20, chaperone protei 98.9 1.2E-09 4.1E-14 89.2 5.3 51 11-61 2-67 (171)
32 3bvo_A CO-chaperone protein HS 98.9 2.4E-09 8.1E-14 90.0 6.8 57 5-61 38-109 (207)
33 3apo_A DNAJ homolog subfamily 98.8 1.6E-09 5.3E-14 103.8 1.5 57 7-63 18-82 (780)
34 3uo3_A J-type CO-chaperone JAC 98.7 9.9E-09 3.4E-13 84.6 5.0 60 3-62 4-75 (181)
35 2y4t_A DNAJ homolog subfamily 97.1 0.00031 1.1E-08 59.7 4.4 53 10-62 382-445 (450)
36 2pzi_A Probable serine/threoni 91.6 0.11 3.9E-06 48.7 3.6 46 9-54 628-675 (681)
37 2gqb_A Conserved hypothetical 43.3 25 0.00084 27.3 3.9 52 10-68 71-124 (130)
38 4gic_A HDH, histidinol dehydro 43.2 20 0.00068 32.9 4.0 36 22-65 74-109 (423)
39 1kae_A HDH, histidinol dehydro 39.2 29 0.001 31.9 4.4 36 22-65 68-103 (434)
40 1qqr_A Streptokinase domain B; 33.9 28 0.00096 27.3 2.9 38 4-41 26-63 (138)
41 2dpo_A L-gulonate 3-dehydrogen 33.8 72 0.0025 27.3 5.9 56 10-65 260-315 (319)
42 4dnd_A Syntaxin-10, SYN10; str 33.8 28 0.00096 26.6 2.9 28 4-38 20-47 (130)
43 2wjv_D Regulator of nonsense t 33.0 29 0.00099 25.2 2.8 28 41-68 5-32 (97)
44 3uun_A Dystrophin; triple heli 29.9 1.3E+02 0.0046 20.5 5.9 32 25-56 60-98 (119)
45 3vem_A Helicase protein MOM1; 28.9 51 0.0017 25.0 3.6 14 44-57 69-82 (115)
46 2pjw_H Uncharacterized protein 27.1 29 0.00099 25.1 1.8 39 22-60 32-87 (88)
47 1j0g_A Hypothetical protein 18 25.0 24 0.00082 25.6 1.0 30 7-39 19-48 (92)
48 2zy9_A Mg2+ transporter MGTE; 24.7 1.4E+02 0.0048 26.8 6.4 33 132-166 398-431 (473)
49 2nsa_A Trigger factor, TF; cha 24.1 1.4E+02 0.0049 22.4 5.6 25 21-45 108-132 (170)
50 3uul_A Utrophin; spectrin repe 22.0 1.8E+02 0.0063 19.8 5.4 11 45-55 87-97 (118)
51 3rgc_A Possible periplasmic pr 21.0 2.7E+02 0.0091 22.2 6.9 59 15-75 47-120 (252)
52 4gmn_B 60S ribosomal protein L 20.7 54 0.0019 21.2 2.0 27 49-75 9-35 (49)
No 1
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.5e-14 Score=104.04 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=48.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhhhh
Q 028940 8 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 8 ~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
...|||++|||+++||.+|||+||++|..+||||+ +++.+|++||+.+....-|.+
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 46899999999999999999999999999999996 478899999999765544333
No 2
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.43 E-value=5.7e-14 Score=99.38 Aligned_cols=57 Identities=7% Similarity=0.056 Sum_probs=50.9
Q ss_pred CCCCCCCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCH----hHHHHHHHHHHHHHhhHhh
Q 028940 5 SRIKVWDPYKRLGISP-YASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 5 p~~~~~dpY~~LGv~~-~As~eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~Ilm~~l~ 61 (201)
+.|+.+|+|++|||++ +||.+||++||++|+.+||||. +.+.+|++|||.+....+|
T Consensus 9 ~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 9 PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp SSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 4577889999999999 7999999999999999999874 6889999999998776554
No 3
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.8e-13 Score=95.95 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=50.2
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhhh
Q 028940 6 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 6 ~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
.++..|+|++|||+++||.+||++||+++..+||||. +.+.+|++||+.+.....|+
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 67 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4678899999999999999999999999999999984 56789999999977665443
No 4
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.8e-13 Score=97.74 Aligned_cols=58 Identities=24% Similarity=0.214 Sum_probs=50.4
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhhhh
Q 028940 6 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 6 ~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
.++..|+|++|||+++||.+||++||++++.+||||+ +.+.+|++||+.|.....|+.
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~ 67 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 4567899999999999999999999999999999995 577899999999776654443
No 5
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.7e-13 Score=96.71 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=49.5
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhh
Q 028940 6 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 6 ~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
.++..|+|++|||+++||.+||++||+++..+||||. +.+.+|++||+.+.....|
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R 65 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKR 65 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHH
Confidence 4678899999999999999999999999999999996 5778999999987665443
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=6.5e-13 Score=97.07 Aligned_cols=56 Identities=27% Similarity=0.321 Sum_probs=49.4
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhhhh
Q 028940 8 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 8 ~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
...|||++|||+++|+.+||++||+++..+||||+ +.+.+|++||+.+.....|+.
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 77 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 46799999999999999999999999999999996 578899999999876655443
No 7
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.38 E-value=1.8e-13 Score=100.57 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=49.9
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------------hHHHHHHHHHHHHHhhHhh
Q 028940 5 SRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 5 p~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
..++..|+|++|||+++|+.+|||+||+++..+||||+ +.+.+|++||+.|.....|
T Consensus 11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R 81 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETK 81 (94)
T ss_dssp SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHH
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHH
Confidence 34678899999999999999999999999999999998 4677999999997655443
No 8
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=4.3e-13 Score=96.35 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=48.6
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHhhHhh
Q 028940 6 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 6 ~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
.....|+|++|||+++||.+||++||++++.+||||+ +.+.+|++||+.+.....|
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 69 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHH
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 4567899999999999999999999999999999985 3678999999997655443
No 9
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.37 E-value=5.5e-13 Score=94.85 Aligned_cols=54 Identities=26% Similarity=0.239 Sum_probs=47.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhHhhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
..|||++|||+++||.+||++||+++..+||||. +.+.+|++||+.+.....|+
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 62 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 5799999999999999999999999999999995 57789999999976554443
No 10
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.37 E-value=7.8e-13 Score=93.27 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=47.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-----hHHHHHHHHHHHHHhhHhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-----~~~~~Ie~AYD~Ilm~~l~ 61 (201)
....|+|++|||+++||.+||++||+++..+||||. +.+.+|+.||+.+.....|
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHH
Confidence 356799999999999999999999999999999985 6788999999987655443
No 11
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9e-13 Score=98.36 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=51.5
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhhhh
Q 028940 5 SRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 5 p~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
..++..|+|++|||+++|+.+|||+||++|+.+||||+ +.+.+|++||+.|.....|+.
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~ 78 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 35778899999999999999999999999999999986 477899999999776665544
No 12
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.36 E-value=6.7e-13 Score=97.84 Aligned_cols=56 Identities=29% Similarity=0.286 Sum_probs=49.1
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-----hHHHHHHHHHHHHHhhHhh
Q 028940 6 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 6 ~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-----~~~~~Ie~AYD~Ilm~~l~ 61 (201)
.+...|+|++|||+++||.+||++||+++.++||||+ +++.+|++||+.|.....|
T Consensus 4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R 64 (92)
T 2o37_A 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKR 64 (92)
T ss_dssp CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHH
T ss_pred cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHH
Confidence 3467899999999999999999999999999999986 5788999999997665443
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=95.74 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=49.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHhhHhhhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
....|+|++|||+++|+.+||++||++|+.+||||+ +.+.+|++||+.|.....|+.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~ 71 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 456799999999999999999999999999999985 367899999999876654443
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=2.5e-12 Score=97.70 Aligned_cols=57 Identities=21% Similarity=0.159 Sum_probs=49.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhhhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
++..|||++|||+++|+.+|||+||++|..+||||+ +.+.+|++||+.|.....|+.
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~ 78 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 567899999999999999999999999999999985 467799999999776655544
No 15
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.8e-12 Score=97.75 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=50.4
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhhh
Q 028940 5 SRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 5 p~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
+.++..|+|++|||+++|+.+|||+||+++..+||||+ +++.+|++||+.|.....|+
T Consensus 15 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~ 80 (112)
T 2ctq_A 15 RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80 (112)
T ss_dssp CCCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 34667899999999999999999999999999999985 46789999999987665443
No 16
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.30 E-value=9.8e-13 Score=94.94 Aligned_cols=57 Identities=4% Similarity=-0.067 Sum_probs=49.0
Q ss_pred CCCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCH----hHHHHHHHHHHHHHhhHhhhh
Q 028940 7 IKVWDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~--As~eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
.+.+++|++|||+++ ||.+|||+|||+|..+||||+ +++.+|++||+.+.....+.|
T Consensus 8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~ 70 (79)
T 1faf_A 8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR 70 (79)
T ss_dssp HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 445689999999999 999999999999999999975 789999999999765444443
No 17
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.27 E-value=5.8e-12 Score=94.42 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=46.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHhhHhhh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
.|+|++|||+++||.+|||+||+++..+||||+ +.+.+|++||+.+.....|+
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~ 63 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 589999999999999999999999999999986 36789999999977665444
No 18
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.24 E-value=2e-12 Score=95.44 Aligned_cols=55 Identities=9% Similarity=-0.023 Sum_probs=48.0
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHHHHHhhHh
Q 028940 6 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSF 60 (201)
Q Consensus 6 ~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~---------~~~~~Ie~AYD~Ilm~~l 60 (201)
.++.+|.|++|||+++||.+|||+||++|+.+||||+ +++.+|++||+.|.....
T Consensus 12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~ 75 (88)
T 1iur_A 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAF 75 (88)
T ss_dssp SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence 3566789999999999999999999999999999985 467899999999765533
No 19
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.24 E-value=6.9e-12 Score=94.80 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=48.1
Q ss_pred CCCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCH-----------hHHHHHHHHHHHHHhhHhhh
Q 028940 8 KVWDPYKRLGISPYA-SEEEIWGSRNFLLEQYTGHE-----------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 8 ~~~dpY~~LGv~~~A-s~eeIk~A~~~l~~~~~~D~-----------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
...|||++|||+++| |.+||++||+++..+||||+ +.+.+|++||+.|.....|+
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~ 79 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT 79 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 467999999999999 99999999999999999993 46789999999987665443
No 20
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.23 E-value=1.6e-12 Score=97.49 Aligned_cols=55 Identities=29% Similarity=0.291 Sum_probs=47.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhhhh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
..|+|++|||+++||.+|||+||++|.++||||+ +++.+|++||+.|.....|++
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~ 64 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 5799999999999999999999999999999986 367799999999776554443
No 21
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.21 E-value=9e-12 Score=99.43 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=50.6
Q ss_pred CCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------------hHHHHHHHHHHHHHhhHhh
Q 028940 4 FSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 4 fp~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
.+++...|+|++|||+++||.+|||+||+++.++||||+ +.+.+|++||+.+.....|
T Consensus 4 ~~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R 75 (155)
T 2l6l_A 4 VEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETK 75 (155)
T ss_dssp CCCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHH
T ss_pred cccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 466788999999999999999999999999999999986 4667999999997655444
No 22
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.15 E-value=2.8e-11 Score=98.49 Aligned_cols=54 Identities=26% Similarity=0.246 Sum_probs=47.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH--------hHHHHHHHHHHHHHhhHhhhh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~--------~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
+|+|++|||+++||.+|||+|||++..+||||+ +++.+|++||+.+.....|++
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~ 63 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 689999999999999999999999999999987 367899999999776655543
No 23
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.12 E-value=3.4e-11 Score=89.91 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=43.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCHh-----------HHHHHHHHHHHHHh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER-----------SEESIEAAFEKLLM 57 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~~-----------~~~~Ie~AYD~Ilm 57 (201)
++.|++|||+++||.+|||+|||++..+||||+. ++.+|++|||.+..
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999852 56799999998653
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.11 E-value=1.2e-11 Score=95.31 Aligned_cols=57 Identities=7% Similarity=0.016 Sum_probs=50.0
Q ss_pred CCCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCH----hHHHHHHHHHHHHHhhHhhhhh
Q 028940 8 KVWDPYKRLGISPYASE--EEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFRRRK 64 (201)
Q Consensus 8 ~~~dpY~~LGv~~~As~--eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~Ilm~~l~~R~ 64 (201)
...|+|++|||+++|+. +|||+||++|+++||||+ +++.+|++||+.|.....|++.
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~ 68 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQ 68 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCS
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHh
Confidence 35689999999999999 999999999999999986 5889999999998776666553
No 25
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.07 E-value=1.2e-11 Score=110.33 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHHhhH
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTS 59 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~ 59 (201)
|+.+|||++|||+++||.+|||+|||+|..+||||+ +++.+|++|||.|....
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~ 84 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQ 84 (329)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhh
Confidence 667899999999999999999999999999999994 46789999999976543
No 26
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.07 E-value=2e-11 Score=100.70 Aligned_cols=59 Identities=8% Similarity=0.013 Sum_probs=49.9
Q ss_pred CCCCCCCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCH----hHHHHHHHHHHHHHhhHhhhh
Q 028940 5 SRIKVWDPYKRLGISPYAS--EEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 5 p~~~~~dpY~~LGv~~~As--~eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~Ilm~~l~~R 63 (201)
.+.+..|+|++|||+++|| .+|||+|||++..+||||+ +++.+|++||+.+.....|++
T Consensus 6 ~~~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~ 70 (174)
T 2pf4_E 6 NREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH 70 (174)
T ss_dssp CHHHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455679999999999999 6999999999999999986 577899999999776655554
No 27
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.00 E-value=3.5e-10 Score=92.48 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=46.3
Q ss_pred CCCCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCH-------------hHHHHHHHHHHHHHhhHhhh
Q 028940 8 KVWDPYKRLGISPYAS--EEEIWGSRNFLLEQYTGHE-------------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 8 ~~~dpY~~LGv~~~As--~eeIk~A~~~l~~~~~~D~-------------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
...|||++|||+++++ .+||++||+++..+||||+ +.+.+|+.||+.+.....|.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~ 71 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRA 71 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 3579999999999998 9999999999999999997 35679999999976554433
No 28
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.99 E-value=3e-10 Score=79.79 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=46.3
Q ss_pred CCCCCcccccCCCCC---CCHHHHHHHHHHHHHHhCCCH----hHHHHHHHHHHHHHhh
Q 028940 7 IKVWDPYKRLGISPY---ASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMT 58 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~---As~eeIk~A~~~l~~~~~~D~----~~~~~Ie~AYD~Ilm~ 58 (201)
|+.+++|++|||+++ ++.+||+++||+|+.++|||+ ....+|+.|+|.+..+
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 566789999999999 999999999999999999885 5688999999996543
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=98.96 E-value=3.7e-10 Score=93.69 Aligned_cols=52 Identities=8% Similarity=0.040 Sum_probs=46.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-----------hHHHHHHHHHHHHHhhHhh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-----------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
+|+|++|||+++|+.+|||+||+++..+||||+ +.+.+|++||+.+.....|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR 179 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhh
Confidence 699999999999999999999999999999986 2667999999997665443
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=98.94 E-value=4.9e-10 Score=85.22 Aligned_cols=48 Identities=8% Similarity=-0.137 Sum_probs=42.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCHh---------------HHHHHHHHHHHHHh
Q 028940 9 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER---------------SEESIEAAFEKLLM 57 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~~---------------~~~~Ie~AYD~Ilm 57 (201)
..|+|++||++. ||.+|||+|||++..+||||+. ++.+|++||+.+..
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd 102 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 469999999996 9999999999999999999862 45689999999753
No 31
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=98.90 E-value=1.2e-09 Score=89.17 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=45.1
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCH-------------hHHHHHHHHHHHHHhhHhh
Q 028940 11 DPYKRLGISPYA--SEEEIWGSRNFLLEQYTGHE-------------RSEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 11 dpY~~LGv~~~A--s~eeIk~A~~~l~~~~~~D~-------------~~~~~Ie~AYD~Ilm~~l~ 61 (201)
|||++|||++++ |.+||++||++|..+||||+ +.+.+|+.||+.+.....|
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R 67 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMR 67 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 799999999999 99999999999999999996 2567999999997655444
No 32
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=98.89 E-value=2.4e-09 Score=90.03 Aligned_cols=57 Identities=11% Similarity=0.027 Sum_probs=47.1
Q ss_pred CCCCCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCHh-------------HHHHHHHHHHHHHhhHhh
Q 028940 5 SRIKVWDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFR 61 (201)
Q Consensus 5 p~~~~~dpY~~LGv~~~--As~eeIk~A~~~l~~~~~~D~~-------------~~~~Ie~AYD~Ilm~~l~ 61 (201)
|-....|+|++|||+++ +|.+||++||++|..+||||+. +..+|+.||+.+.....|
T Consensus 38 ~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R 109 (207)
T 3bvo_A 38 APDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSR 109 (207)
T ss_dssp CCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 43456799999999997 7999999999999999999862 347999999997655444
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.75 E-value=1.6e-09 Score=103.76 Aligned_cols=57 Identities=25% Similarity=0.213 Sum_probs=33.6
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCHh--------HHHHHHHHHHHHHhhHhhhh
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER--------SEESIEAAFEKLLMTSFRRR 63 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~~--------~~~~Ie~AYD~Ilm~~l~~R 63 (201)
....|||++|||+++||.+|||+|||+|.++||||+. ++.+|++||+.+.....|++
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~ 82 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 82 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHH
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHH
Confidence 4568999999999999999999999999999999974 56799999999877665544
No 34
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=98.71 E-value=9.9e-09 Score=84.61 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=48.9
Q ss_pred CCCCCCCCCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCH-----hHHHHHHHHHHHHHhhHhhh
Q 028940 3 TFSRIKVWDPYKRL------GISP-YASEEEIWGSRNFLLEQYTGHE-----RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 3 ~fp~~~~~dpY~~L------Gv~~-~As~eeIk~A~~~l~~~~~~D~-----~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
+-++....|+|++| |+.+ +||.+||++||++|..+||||+ +.+.+|+.||+.+.....|.
T Consensus 4 ~~~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~ 75 (181)
T 3uo3_A 4 LVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRS 75 (181)
T ss_dssp ---CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHH
T ss_pred ccCCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHH
Confidence 34677788999999 4655 9999999999999999999997 57789999999976655443
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.15 E-value=0.00031 Score=59.73 Aligned_cols=53 Identities=30% Similarity=0.285 Sum_probs=44.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCH-----------hHHHHHHHHHHHHHhhHhhh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----------RSEESIEAAFEKLLMTSFRR 62 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~-----------~~~~~Ie~AYD~Ilm~~l~~ 62 (201)
.|.|+.||+.++++.+|++++|+++..++|||. +++.+|.+||+.+.....|+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 488999999999999999999999999999874 26678999999966554443
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.55 E-value=0.11 Score=48.73 Aligned_cols=46 Identities=11% Similarity=-0.061 Sum_probs=39.1
Q ss_pred CCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 028940 9 VWDPYKRLGISPYASE--EEIWGSRNFLLEQYTGHERSEESIEAAFEK 54 (201)
Q Consensus 9 ~~dpY~~LGv~~~As~--eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~ 54 (201)
..|+|++||++-++.. .+|++|||++.++.++++++.+-|+.|+..
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQRHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccc
Confidence 4569999999877777 789999999999999998888888888753
No 37
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=43.31 E-value=25 Score=27.32 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=40.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHH--hCCCHhHHHHHHHHHHHHHhhHhhhhhhhcc
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQ--YTGHERSEESIEAAFEKLLMTSFRRRKKEKI 68 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~--~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~Gki 68 (201)
-|-.+.||++.+ -.+|++|.+| |++|..--+..|-+.-+-+|++|. ..-||+
T Consensus 71 VDLmKlLglDsS------l~~RkeLA~eL~~~~~~~dSA~mNiwLHk~vm~kLa-~NGGkv 124 (130)
T 2gqb_A 71 VDLMKALDIDSS------LSARKELAKELGYSGDMNDSASMNIWLHKQVMSKLV-ANGGKL 124 (130)
T ss_dssp HHHHHHTCCCCS------HHHHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHHHG-GGSEEC
T ss_pred HHHHHHhCCCcc------HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHH-HhCCCC
Confidence 366788888765 3578889888 668888889999999999999998 444554
No 38
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=43.24 E-value=20 Score=32.93 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhh
Q 028940 22 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKK 65 (201)
Q Consensus 22 As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~ 65 (201)
-|.+||++|++++ |++.++.|+.||+.|. ++.++|+
T Consensus 74 vs~~ei~~A~~~l------~~~~~~ai~~A~~~I~--~fh~~Q~ 109 (423)
T 4gic_A 74 LPRDVLEAAWQAL------PAEQAKALREAAERIR--AYAERQK 109 (423)
T ss_dssp ECHHHHHHHHHTS------CHHHHHHHHHHHHHHH--HHHHHHC
T ss_pred cCHHHHHHHHhhC------CHHHHHHHHHHHHHHH--HHHHhcc
Confidence 4788999998877 8888999999999984 5555654
No 39
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=39.17 E-value=29 Score=31.93 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhh
Q 028940 22 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKK 65 (201)
Q Consensus 22 As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~ 65 (201)
-|.+||++|++++ |++.++.|+.|++.|. ++.++|+
T Consensus 68 Vs~~ei~~A~~~~------~~~~~~ai~~A~~nI~--~fH~~Q~ 103 (434)
T 1kae_A 68 VSAEEIAAASERL------SDELKQAMAVAVKNIE--TFHTAQK 103 (434)
T ss_dssp CCHHHHHHHHHHS------CHHHHHHHHHHHHHHH--HHHHTTC
T ss_pred cCHHHHHHHHHhC------CHHHHHHHHHHHHHHH--HHHHHhc
Confidence 4788999998887 8888999999999984 4555553
No 40
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=33.86 E-value=28 Score=27.27 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=31.1
Q ss_pred CCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 028940 4 FSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGH 41 (201)
Q Consensus 4 fp~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D 41 (201)
+|.....-.+.++-|...-+.+|++++-..++.|+|||
T Consensus 26 ~P~~~~~~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 26 RPGLKLTKLLKTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp CTTBCCCEEEEEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred ccchhhhhhhcccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 34443333478999999999999999999999999997
No 41
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=33.84 E-value=72 Score=27.27 Aligned_cols=56 Identities=9% Similarity=0.018 Sum_probs=43.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHhhHhhhhhh
Q 028940 10 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKK 65 (201)
Q Consensus 10 ~dpY~~LGv~~~As~eeIk~A~~~l~~~~~~D~~~~~~Ie~AYD~Ilm~~l~~R~~ 65 (201)
+++|+.||=.|+-+.+-+.+--+...++..+|.+...+.++--|..+|+=++.+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~~l~~~~~~~~~ 315 (319)
T 2dpo_A 260 KRVLKSFGSIPEFSGATVEKVNQAMCKKVPADPEHLAARREWRDECLKRLAKLKRQ 315 (319)
T ss_dssp HHHHHTCCCCCCCCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999888888877766666666666667888889999999988877766654
No 42
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=33.81 E-value=28 Score=26.60 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=13.6
Q ss_pred CCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHh
Q 028940 4 FSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQY 38 (201)
Q Consensus 4 fp~~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~ 38 (201)
|-.|+.+|||-.- .+||+++-+++-.-|
T Consensus 20 ~~~ms~~DPF~~V-------k~EVq~sl~~l~~l~ 47 (130)
T 4dnd_A 20 FQSMSLEDPFFVV-------RGEVQKAVNTARGLY 47 (130)
T ss_dssp -------CCHHHH-------HHHHHHHHHHHHHHH
T ss_pred eecCCCCCCcHHH-------HHHHHHHHHHHHHHH
Confidence 4467788898753 577777766654443
No 43
>2wjv_D Regulator of nonsense transcripts 2; hydrolase, zinc-finger, ATP-binding, RNA-binding, nonsense-M mRNA decay, nucleotide-binding, metal-binding; 2.85A {Homo sapiens}
Probab=33.04 E-value=29 Score=25.24 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=18.9
Q ss_pred CHhHHHHHHHHHHHHHhhHhhhhhhhcc
Q 028940 41 HERSEESIEAAFEKLLMTSFRRRKKEKI 68 (201)
Q Consensus 41 D~~~~~~Ie~AYD~Ilm~~l~~R~~Gki 68 (201)
+.+..++.+.+||+++.+++..|+...+
T Consensus 5 ~~~ed~eFdre~~kmm~eS~~sRk~e~~ 32 (97)
T 2wjv_D 5 PCVEDEDFIQALDKMMLENLQQRSGESV 32 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3445578899999999999998875443
No 44
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=29.94 E-value=1.3e+02 Score=20.49 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhCCCH-------hHHHHHHHHHHHHH
Q 028940 25 EEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLL 56 (201)
Q Consensus 25 eeIk~A~~~l~~~~~~D~-------~~~~~Ie~AYD~Il 56 (201)
+.|.+.-+.|+...|.++ ++...++..|+.+.
T Consensus 60 ~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~ 98 (119)
T 3uun_A 60 GNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLR 98 (119)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555443 23456667777743
No 45
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=28.91 E-value=51 Score=25.03 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHh
Q 028940 44 SEESIEAAFEKLLM 57 (201)
Q Consensus 44 ~~~~Ie~AYD~Ilm 57 (201)
.++++-.=||..+.
T Consensus 69 E~ae~k~KYD~~lq 82 (115)
T 3vem_A 69 KMAEVQAEFRRKFH 82 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555444
No 46
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=27.12 E-value=29 Score=25.08 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=26.9
Q ss_pred CCHHHHHHHHH----------HHHHHhCCCH-------hHHHHHHHHHHHHHhhHh
Q 028940 22 ASEEEIWGSRN----------FLLEQYTGHE-------RSEESIEAAFEKLLMTSF 60 (201)
Q Consensus 22 As~eeIk~A~~----------~l~~~~~~D~-------~~~~~Ie~AYD~Ilm~~l 60 (201)
+.++||++-|. +++.+|+--+ +++...++.||.++.+++
T Consensus 32 ~~d~eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~lle~s~ 87 (88)
T 2pjw_H 32 LQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQLMDRAA 87 (88)
T ss_dssp HSCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788888876 4455664322 567788889999776654
No 47
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=24.99 E-value=24 Score=25.56 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhC
Q 028940 7 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYT 39 (201)
Q Consensus 7 ~~~~dpY~~LGv~~~As~eeIk~A~~~l~~~~~ 39 (201)
++.+-||++|.|+|++.|..+-+ .-.+|++
T Consensus 19 SdpklpfkvlsVPE~~PftAVlk---faaEeF~ 48 (92)
T 1j0g_A 19 SDPRLPYKVLSVPESTPFTAVLK---FAAEEFK 48 (92)
T ss_dssp TSTTCCEEEEEEETTSBHHHHHH---HHHHHTT
T ss_pred cCCCCCceEEecCccCchHHHHH---HHHHHcC
Confidence 45667999999999999998754 3445553
No 48
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=24.72 E-value=1.4e+02 Score=26.81 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=16.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHhhhh
Q 028940 132 AACIYFLNEKTKSLARASIIGL-GALASGWILGSVV 166 (201)
Q Consensus 132 ~a~iyfl~~k~~~lgra~ll~~-g~L~~G~~~Gs~l 166 (201)
+..+|+... -.+|-.+.+++ ..++++.++|+++
T Consensus 398 ~~~~~~~~~--~~~~~~v~~a~~~~~~~a~~~g~~~ 431 (473)
T 2zy9_A 398 VGKVYWDGH--PLLLPVVGVSLVLIVFFANLVGAML 431 (473)
T ss_dssp HHHHHHHTC--TTSHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433 34555555554 3445566666655
No 49
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=24.09 E-value=1.4e+02 Score=22.43 Aligned_cols=25 Identities=12% Similarity=0.003 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCHhHH
Q 028940 21 YASEEEIWGSRNFLLEQYTGHERSE 45 (201)
Q Consensus 21 ~As~eeIk~A~~~l~~~~~~D~~~~ 45 (201)
.+|++||.+...++.++|+-+++.+
T Consensus 108 ~vsdeev~~~i~~~A~~y~~~~~~~ 132 (170)
T 2nsa_A 108 SVNDEELEKEAEELAPFWGISPDRA 132 (170)
T ss_dssp CCCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHH
Confidence 4688899998888888888776554
No 50
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=22.03 E-value=1.8e+02 Score=19.82 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 028940 45 EESIEAAFEKL 55 (201)
Q Consensus 45 ~~~Ie~AYD~I 55 (201)
...++..|+.+
T Consensus 87 l~~l~~rw~~L 97 (118)
T 3uul_A 87 MTLLNARWEAL 97 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555566663
No 51
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=20.97 E-value=2.7e+02 Score=22.20 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=36.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCHhHHHHH------------HHHHHHHHhhHhhhhh-hhccch-h-hhhh
Q 028940 15 RLGISPYASEEEIWGSRNFLLEQYTGHERSEESI------------EAAFEKLLMTSFRRRK-KEKINL-K-SRLK 75 (201)
Q Consensus 15 ~LGv~~~As~eeIk~A~~~l~~~~~~D~~~~~~I------------e~AYD~Ilm~~l~~R~-~Gki~v-~-~~ir 75 (201)
.+|+. .|.+||.++..++.++++-|++...+. +...+.++.+++.++. +.++++ + +.++
T Consensus 47 ~~gi~--vsd~ev~~~i~~~~~~~~~s~~~~~~~L~~~g~t~~~~~~~ir~~l~~~~l~~~~~~~~v~vvtd~ei~ 120 (252)
T 3rgc_A 47 QLGIV--VNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAK 120 (252)
T ss_dssp HTTCC--CCHHHHHHHHHHHHHHTTCCHHHHHHHTCC---CHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHH
T ss_pred HcCCC--CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCccCCHHHHH
Confidence 45654 578999999999888887565443321 2344556666666655 345552 3 3445
No 52
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=20.69 E-value=54 Score=21.23 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=21.3
Q ss_pred HHHHHHHHhhHhhhhhhhccchhhhhh
Q 028940 49 EAAFEKLLMTSFRRRKKEKINLKSRLK 75 (201)
Q Consensus 49 e~AYD~Ilm~~l~~R~~Gki~v~~~ir 75 (201)
+.||=.=..-++|+|++||-+--.+.|
T Consensus 9 nkaYfkRyQvkfRRRREGKTDYyaRkr 35 (49)
T 4gmn_B 9 NSAYYSRFQTKFKRRRQGKTDYYARKR 35 (49)
T ss_pred hHHHHHHHhhHHhhhhcccchHHHHHH
Confidence 678888888999999999987554444
Done!