BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028942
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCL 68
+ RL L+ N + LP + L +L+V+ L NR+TSLP ELG +L+ NM+T L
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 69 PETIGSL 75
P G+L
Sbjct: 309 PWEFGNL 315
Score = 44.3 bits (103), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 23/121 (19%)
Query: 12 LVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET 71
L L + I + N+ K L + L+GN +T LP E+ L L L + N LT L
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL--- 285
Query: 72 IGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNN 131
P +GSC+ L+ DN++ LP NL +L+ L +
Sbjct: 286 --------------------PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325
Query: 132 N 132
N
Sbjct: 326 N 326
Score = 42.7 bits (99), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 32/64 (50%)
Query: 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
EI L N++ L L N + LP LG LK N +T+LP E G L L+ L +
Sbjct: 265 EIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
Query: 62 GNML 65
GN L
Sbjct: 325 GNPL 328
Score = 34.3 bits (77), Expect = 0.053, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 101 LEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
L L N N + ELPA I NL +L+ L L++N + +PA L C L+ +N ++
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE-LGSCFQLKYFYFFDNMVT 306
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 3 ISKLINIQRLVLDDNHIERLPVNLGK-LQSLKVMTLDGNRITSLP-DELGQLVRLERLSI 60
+L ++ L L+DN ++ LP + K L++L+ + + N++ +LP QLV L L +
Sbjct: 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116
Query: 61 LGNMLTCLP-ETIGSLRXXXXXXXXXXXXXXXPESI-GSCYSLEELQANDNLIGELP-AS 117
N L LP SL P+ + SL+EL+ +N + +P +
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 118 ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
L LK+L L+NN + ++P + L+ + L NP
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 102 EELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
++L N + LP+ + L L+ L LN+N + +PA + K+ K L+ + + +N +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 25/158 (15%)
Query: 3 ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSI 60
+ +L N+ L+L N ++ LP KL +LK + L N++ SLPD +L L L +
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 61 LGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN 120
N L LP+ + +L L ++N + LP + +
Sbjct: 141 YHNQLQSLPKGV----------------------FDKLTNLTRLDLDNNQLQSLPEGVFD 178
Query: 121 -LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
L LK L LN+N + +P + +L +I L NNP
Sbjct: 179 KLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNP 216
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 64/153 (41%), Gaps = 20/153 (13%)
Query: 19 IERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSL-RX 77
+ + P +L L+ T+D + LPD Q LE L++ N L LP +I SL R
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRL 152
Query: 78 XXXXXXXXXXXXXXPESIGSCYSLEELQANDNL---------IGELPASICNLIHLKSLC 128
PE + S + E Q NL I LPASI NL +LKSL
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212
Query: 129 LNNNNIGQIPANL----------LKDCKALQNI 151
+ N+ + + + L+ C AL+N
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL 61
E L+N+Q L L+ I LP ++ LQ+LK + + + +++L + L +LE L +
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237
Query: 62 G-NMLTCLPETIG 73
G L P G
Sbjct: 238 GCTALRNYPPIFG 250
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSIL 61
I L N++ L L N + + L +L +L + L GN++ SLP+ +L L+ L ++
Sbjct: 59 IQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 62 GNMLTCLPETI-GSLRXXXXXXXXXXXXXXXPESI-GSCYSLEELQANDNLIGELPASIC 119
N L LP+ + L P+ + +L EL + N + LP +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 120 N-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
+ L LK L L N + +P + +LQ I LH+NP
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 62/154 (40%), Gaps = 28/154 (18%)
Query: 8 NIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSIL---GN 63
N Q L L DN I +L P L +LK + L N++ +LP +G L +L++L N
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP--VGVFDSLTQLTVLDLGTN 98
Query: 64 MLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLIH 123
LT LP + L+EL N + ELP I L H
Sbjct: 99 QLTVLPSAV----------------------FDRLVHLKELFMCCNKLTELPRGIERLTH 136
Query: 124 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
L L L+ N + IP +L + L NP
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 3 ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSI 60
LIN++ L L N + LPV L L V+ L N++T LP +LV L+ L +
Sbjct: 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119
Query: 61 LGNMLTCLPETI 72
N LT LP I
Sbjct: 120 CCNKLTELPRGI 131
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSIL 61
+L++++ L + N + LP + +L L + LD N++ S+P +L L +
Sbjct: 108 FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167
Query: 62 GNMLTCLPETIGSLR 76
GN C I LR
Sbjct: 168 GNPWDCECRDIMYLR 182
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 25/150 (16%)
Query: 12 LVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP 69
L L+ N ++ LP +L SL + L GN++ SLP+ +L L L++ N L LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 70 ETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLC 128
+ L+EL N N + LP + + L LK L
Sbjct: 93 NGV----------------------FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 129 LNNNNIGQIPANLLKDCKALQNISLHNNPI 158
L N + +P + +LQ I LH+NP
Sbjct: 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 9 IQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT 66
+Q L L +N ++P L L + L N ++ ++P LG L +L L + NML
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 67 C-LPETIGSLRXXXXXXXXXXX-XXXXPESIGSCYSLEELQ-ANDNLIGELPASICNLIH 123
+P+ + ++ P + +C +L + +N+ L GE+P I L +
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 124 LKSLCLNNNNI-GQIPANLLKDCKALQNISLHNN 156
L L L+NN+ G IPA L DC++L + L+ N
Sbjct: 513 LAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTN 545
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 21 RLPVNLGKLQSLKVMTLDGNRITS-LPDELGQLVRLERLSILGNMLTC-LPETIGSLRXX 78
+P L +++L+ + LD N +T +P L L +S+ N LT +P+ IG L
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 79 XXXX-XXXXXXXXXPESIGSCYSLEELQANDNLI-GELPASI 118
P +G C SL L N NL G +PA++
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 98 CYSLEELQANDNLI-GELPASICNLIHLKSLCLNNNNIGQ-IPANLLKDCKALQNISLHN 155
C L+ L + N I G++ S C ++L+ L +++NN IP L DC ALQ++ +
Sbjct: 174 CGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISG 229
Query: 156 NPISMD 161
N +S D
Sbjct: 230 NKLSGD 235
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 9 IQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT 66
+Q L L +N ++P L L + L N ++ ++P LG L +L L + NML
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 67 C-LPETIGSLRXXXXXXXXXXXXXXX-PESIGSCYSLEELQ-ANDNLIGELPASICNLIH 123
+P+ + ++ P + +C +L + +N+ L GE+P I L +
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 124 LKSLCLNNNNI-GQIPANLLKDCKALQNISLHNN 156
L L L+NN+ G IPA L DC++L + L+ N
Sbjct: 516 LAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTN 548
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 21 RLPVNLGKLQSLKVMTLDGNRITS-LPDELGQLVRLERLSILGNMLTC-LPETIGSLRXX 78
+P L +++L+ + LD N +T +P L L +S+ N LT +P+ IG L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 79 XXXXXXXXXXXXX-PESIGSCYSLEELQANDNLI-GELPASI 118
P +G C SL L N NL G +PA++
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 98 CYSLEELQANDNLI-GELPASICNLIHLKSLCLNNNNIGQ-IPANLLKDCKALQNISLHN 155
C L+ L + N I G++ S C ++L+ L +++NN IP L DC ALQ++ +
Sbjct: 177 CGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISG 232
Query: 156 NPISMD 161
N +S D
Sbjct: 233 NKLSGD 238
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 12 LVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE 70
L L N ++ LP+ L +L V+ + NR+TSLP L L L+ L + GN L LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP- 140
Query: 71 TIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCL 129
P + LE+L +N + ELPA + N L +L +L L
Sbjct: 141 ---------------------PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
Query: 130 NNNNIGQIPANLLKDCKALQNISLHNNPI 158
N++ IP L LH NP
Sbjct: 180 QENSLYTIPKGFFGS-HLLPFAFLHGNPW 207
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 1 MEISKLINIQRLV---LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLE 56
++ L+ RL LD + +L V+ G L L + L N++ SLP LGQ L L
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLP-LLGQTLPALT 103
Query: 57 RLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPA 116
L + N LT LP +G+LR +G L+EL N + LP
Sbjct: 104 VLDVSFNRLTSLP--LGALR-----------------GLGE---LQELYLKGNELKTLPP 141
Query: 117 SICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
+ L+ L L NN + ++PA LL + L + L N
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 62/147 (42%), Gaps = 25/147 (17%)
Query: 14 LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETI 72
L N ++ LP+ L +L V+ + NR+TSLP L L L+ L + GN L LP
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP--- 140
Query: 73 GSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCLNN 131
P + LE+L +N + ELPA + N L +L +L L
Sbjct: 141 -------------------PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 132 NNIGQIPANLLKDCKALQNISLHNNPI 158
N++ IP L LH NP
Sbjct: 182 NSLYTIPKGFFGS-HLLPFAFLHGNPW 207
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 1 MEISKLINIQRLV---LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLE 56
++ L+ RL LD + +L V+ G L L + L N++ SLP LGQ L L
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLP-LLGQTLPALT 103
Query: 57 RLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPA 116
L + N LT LP +G+LR +G L+EL N + LP
Sbjct: 104 VLDVSFNRLTSLP--LGALR-----------------GLGE---LQELYLKGNELKTLPP 141
Query: 117 SICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
+ L+ L L NN + ++PA LL + L + L N
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 14 LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETI 72
L N ++ LP+ L +L V+ + NR+TSLP L L L+ L + GN L LP
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP--- 140
Query: 73 GSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCLNN 131
P + LE+L +N + ELPA + N L +L +L L
Sbjct: 141 -------------------PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 132 NNIGQIPANLLKDCKALQNISLHNNP 157
N++ IP L LH NP
Sbjct: 182 NSLYTIPKGFFGS-HLLPFAFLHGNP 206
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 1 MEISKLINIQRLV---LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLE 56
++ L+ RL LD + +L V+ G L L + L N++ SLP LGQ L L
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLP-LLGQTLPALT 103
Query: 57 RLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPA 116
L + N LT LP +G+LR +G L+EL N + LP
Sbjct: 104 VLDVSFNRLTSLP--LGALR-----------------GLGE---LQELYLKGNELKTLPP 141
Query: 117 SICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
+ L+ L L NN + ++PA LL + L + L N
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 14 LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETI 72
L N ++ LP+ L +L V+ + NR+TSLP L L L+ L + GN L LP
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP--- 140
Query: 73 GSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCLNN 131
P + LE+L +N + ELPA + N L +L +L L
Sbjct: 141 -------------------PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 132 NNIGQIPANLLKDCKALQNISLHNNP 157
N++ IP L LH NP
Sbjct: 182 NSLYTIPKGFFGS-HLLPFAFLHGNP 206
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 1 MEISKLINIQRLV---LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLE 56
++ L+ RL LD + +L V+ G L L + L N++ SLP LGQ L L
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLP-LLGQTLPALT 103
Query: 57 RLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPA 116
L + N LT LP +G+LR +G L+EL N + LP
Sbjct: 104 VLDVSFNRLTSLP--LGALR-----------------GLGE---LQELYLKGNELKTLPP 141
Query: 117 SICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
+ L+ L L NN + ++PA LL + L + L N
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 12 LVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE 70
L L N ++ LP+ L +L V+ + NR+TSLP L L L+ L + GN L LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP- 140
Query: 71 TIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCL 129
P + LE+L +N + ELPA + N L +L +L L
Sbjct: 141 ---------------------PGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLL 179
Query: 130 NNNNIGQIPANLLKDCKALQNISLHNNPI 158
N++ IP L LH NP
Sbjct: 180 QENSLYTIPKGFFGS-HLLPFAFLHGNPW 207
Score = 33.1 bits (74), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 1 MEISKLINIQRLV---LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLE 56
++ L+ RL LD + +L V+ G L L + L N++ SLP LGQ L L
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLP-LLGQTLPALT 103
Query: 57 RLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPA 116
L + N LT LP +G+LR +G L+EL N + LP
Sbjct: 104 VLDVSFNRLTSLP--LGALR-----------------GLGE---LQELYLKGNELKTLPP 141
Query: 117 SICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
+ L+ L L NN++ ++PA LL + L + L N
Sbjct: 142 GLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQEN 182
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC 67
+I LV+ DN++ LP +L++L+V GN++TSLP L+ LSI N LT
Sbjct: 62 HITTLVIPDNNLTSLPALPPELRTLEV---SGNQLTSLPVLPPGLL---ELSIFSNPLTH 115
Query: 68 LPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLIHLKSL 127
LP L P L+EL +DN + LPA L L +
Sbjct: 116 LPALPSGLCKLWIFGNQLTSLPVLPP------GLQELSVSDNQLASLPALPSELCKLWAY 169
Query: 128 CLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
NN + +P +L LQ +S+ +N ++
Sbjct: 170 ---NNQLTSLP--MLP--SGLQELSVSDNQLA 194
Score = 30.0 bits (66), Expect = 0.83, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 20/78 (25%)
Query: 9 IQRLVLDDNHIERLPV---NLGKL--------------QSLKVMTLDGNRITSLPDELGQ 51
+Q L + DN + LP L KL LK + + GNR+TSLP +
Sbjct: 183 LQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSE 242
Query: 52 LVRLERLSILGNMLTCLP 69
L+ L + GN LT LP
Sbjct: 243 ---LKELMVSGNRLTSLP 257
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 29 LQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXX 87
L +L+ + L N + +LPD+ L L L + GN ++ +PE
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE----------------- 169
Query: 88 XXXXPESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCK 146
+ +SL+ L + N + + P + +L L +L L NN+ +P L +
Sbjct: 170 -----RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 224
Query: 147 ALQNISLHNNPISMD 161
ALQ + L++NP D
Sbjct: 225 ALQYLRLNDNPWVCD 239
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 29 LQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXX 87
L +L+ + L N + +LPD+ L L L + GN ++ +PE
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE----------------- 170
Query: 88 XXXXPESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCK 146
+ +SL+ L + N + + P + +L L +L L NN+ +P L +
Sbjct: 171 -----RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225
Query: 147 ALQNISLHNNPISMD 161
ALQ + L++NP D
Sbjct: 226 ALQYLRLNDNPWVCD 240
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 25/159 (15%)
Query: 6 LINIQRLVLDDNHIERLPVNLGK-LQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGN 63
L ++ L LD ++ L L + L +L+ + L N + +LPD L L L + GN
Sbjct: 103 LGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 162
Query: 64 MLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGEL-PASICNLI 122
+ +PE + +SL+ L + N + + P + +L
Sbjct: 163 RIPSVPE----------------------HAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
Query: 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161
L +L L NN+ +PA +L ++LQ + L++NP D
Sbjct: 201 RLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCD 239
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 47/150 (31%)
Query: 11 RLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP 69
RL L+ N ++ LP KL L ++L N+I SLPD G +L +L+I
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD--GVFDKLTKLTI--------- 80
Query: 70 ETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLC 128
L ++N + LP + + L LK L
Sbjct: 81 ----------------------------------LYLHENKLQSLPNGVFDKLTQLKELA 106
Query: 129 LNNNNIGQIPANLLKDCKALQNISLHNNPI 158
L+ N + +P + +LQ I LH NP
Sbjct: 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 93 ESIGSCYS-LEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 150
+S+ S ++ LE+L N I ++ + L HLK L L+ N + +P + +LQ
Sbjct: 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQK 351
Query: 151 ISLHNNP 157
I LH NP
Sbjct: 352 IWLHTNP 358
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 1 MEISKLINIQRLV---LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLE 56
++ L+ RL LD + +L V+ G L L + L N++ SLP LGQ L L
Sbjct: 46 FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLP-LLGQTLPALT 103
Query: 57 RLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPA 116
L + N LT LP +G+LR +G L+EL N + LP
Sbjct: 104 VLDVSFNRLTSLP--LGALR-----------------GLGE---LQELYLKGNELKTLPP 141
Query: 117 SICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
+ L+ L L NNN+ ++PA LL + L + L N
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 1 MEISKLINIQRLV---LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLE 56
++ L+ RL LD + +L V+ G L L + L N++ SLP LGQ L L
Sbjct: 46 FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLP-LLGQTLPALT 103
Query: 57 RLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPA 116
L + N LT LP +G+LR +G L+EL N + LP
Sbjct: 104 VLDVSFNRLTSLP--LGALR-----------------GLGE---LQELYLKGNELKTLPP 141
Query: 117 SICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
+ L+ L L NNN+ ++PA LL + L + L N
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 1 MEISKLINIQRLV---LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLE 56
++ L+ RL LD + +L V+ G L L + L N++ SLP LGQ L L
Sbjct: 46 FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLP-LLGQTLPALT 103
Query: 57 RLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPA 116
L + N LT LP +G+LR +G L+EL N + LP
Sbjct: 104 VLDVSFNRLTSLP--LGALR-----------------GLGE---LQELYLKGNELKTLPP 141
Query: 117 SICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
+ L+ L L NNN+ ++PA LL + L + L N
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 101 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
L++L N N + +P + + L L L LN+N++ IP + K+L +I L+NNP
Sbjct: 59 LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 1 MEISKLINIQRLV---LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLE 56
++ L+ RL LD + +L V+ G L L + L N++ SLP LGQ L L
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLP-LLGQTLPALT 103
Query: 57 RLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPA 116
L + N LT LP +G+LR +G L+EL N + LP
Sbjct: 104 VLDVSFNRLTSLP--LGALR-----------------GLGE---LQELYLKGNELKTLPP 141
Query: 117 SICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
+ L+ L L NNN+ ++PA LL + L + L N
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 1 MEISKLINIQRLV---LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQ-LVRLE 56
++ L+ RL LD + +L V+ G L L + L N++ SLP LGQ L L
Sbjct: 47 FSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLP-LLGQTLPALT 104
Query: 57 RLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPA 116
L + N LT LP +G+LR +G L+EL N + LP
Sbjct: 105 VLDVSFNRLTSLP--LGALR-----------------GLGE---LQELYLKGNELKTLPP 142
Query: 117 SICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
+ L+ L L NNN+ ++PA LL + L + L N
Sbjct: 143 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 183
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 67/159 (42%), Gaps = 43/159 (27%)
Query: 8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC 67
+++ L +D+N + LP L L L+ + D N++T LP EL LE LS+ N LT
Sbjct: 121 SLKHLDVDNNQLTXLP-ELPAL--LEYINADNNQLTXLP-ELP--TSLEVLSVRNNQLTF 174
Query: 68 LPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLIHLKSL 127
LPE PE SLE L + NL+ LPA H +
Sbjct: 175 LPE--------------------LPE------SLEALDVSTNLLESLPAVPVRNHHSEET 208
Query: 128 CL----NNNNIGQIPANLLK---DCKALQNISLHNNPIS 159
+ N I IP N+L C I L +NP+S
Sbjct: 209 EIFFRCRENRITHIPENILSLDPTC----TIILEDNPLS 243
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 101 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
L L ++N + LPA + + L L L LN+N + IP + K+L +I L NNP
Sbjct: 64 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 121
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 101 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157
L L ++N + LPA + + L L L LN+N + IP + K+L +I L NNP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 46/155 (29%)
Query: 8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLT 66
++ L LD N +P L + L ++ L NRI++L ++ + +L L + N L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 67 CLPETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLIHLKS 126
C+P P + L L+
Sbjct: 92 CIP---------------------------------------------PRTFDGLKSLRL 106
Query: 127 LCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161
L L+ N+I +P D AL ++++ NP+ D
Sbjct: 107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 101 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
L L ++N + LPA + + L L L LN+N + IP + ++L +I L NNP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 22 LPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRL-ERLSILGNMLTC-LPETIGSL 75
LP ++ L +L +T DGNRI+ ++PD G +L ++I N LT +P T +L
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 32 LKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI 72
+KV+ L NRI S+P ++ L L+ L++ N L +P+ +
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 32 LKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI 72
+KV+ L N+I S+P ++ +L L+ L++ N L +P+ I
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 110 LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156
L G+LPA + I L SL L N I +IPAN + ++N+S +N
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 101 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
L++L N + LP+ + + L LK L LN N + IPA LQ +SL N +
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 101 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
L++L N + LP+ + + L LK L LN N + IPA LQ +SL N +
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 116 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
S+ L L+ L L+NN + ++PA L D K LQ + LH N I+
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNIT 277
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL 45
+S L ++ L LD+N + R+P L L+ L+V+ L N IT +
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 100 SLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQI------PANLLKDCKALQNISL 153
+L EL ++N + +PA + +L L+ + L+ NNI ++ P ISL
Sbjct: 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301
Query: 154 HNNPISM 160
NNP+
Sbjct: 302 FNNPVPY 308
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 29/153 (18%)
Query: 14 LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG 73
+ D +I +P L SL + LDGN+IT + + L L L+ LG +
Sbjct: 178 IADTNITTIPQGLPP--SLTELHLDGNKITKV--DAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 74 SLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN 133
S+ + L EL N+N + ++P + + +++ + L+NNN
Sbjct: 234 G-------------------SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274
Query: 134 IGQI------PANLLKDCKALQNISLHNNPISM 160
I I P + +SL +NP+
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 29 LQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPETI 72
L++L + L N+I+ + P LV+LERL + N L LPE +
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 29/153 (18%)
Query: 14 LDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG 73
+ D +I +P L SL + LDGN+IT + + L L L+ LG +
Sbjct: 178 IADTNITTIPQGLPP--SLTELHLDGNKITKV--DAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 74 SLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN 133
S+ + L EL N+N + ++P + + +++ + L+NNN
Sbjct: 234 G-------------------SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274
Query: 134 IGQI------PANLLKDCKALQNISLHNNPISM 160
I I P + +SL +NP+
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 29 LQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPETI 72
L++L + L N+I+ + P LV+LERL + N L LPE +
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 3 ISKLINIQRLVLDDNHIERLPVNL----GKLQSLKVMTLDGNRITSLP 46
+ +Q+L L N I R PV L KL L ++ L N++ LP
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 7 INIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT 66
++++ +V +N +E LP L L L + D N + +LPD LE L++ N LT
Sbjct: 215 LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLT 270
Query: 67 CLPETIGSLRXXXXXXXXXXXXXXXPESIGSC--------------YSLEELQANDNLIG 112
LPE SL P ++ SLEEL ++N +
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330
Query: 113 ELPASICNLIHLKSLCLNNNNIGQIP 138
ELPA L+ L + N++ ++P
Sbjct: 331 ELPALPP---RLERLIASFNHLAEVP 353
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 24/138 (17%)
Query: 30 QSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGS--LRXXXXXXXXXXX 87
QSLK + +D N + +L D L L LE L + N L LPE S L+
Sbjct: 111 QSLKSLLVDNNNLKALSD-LPPL--LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK 167
Query: 88 XXXXPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA-------- 139
P SLE + A +N + ELP + NL L ++ +NN++ ++P
Sbjct: 168 LPDLPP------SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESI 220
Query: 140 ----NLLKDCKALQNISL 153
N+L++ LQN+
Sbjct: 221 VAGNNILEELPELQNLPF 238
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCL 68
++ L + +N +E+LP L LK++ +D N + LPD LE ++ N L L
Sbjct: 133 LEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEEL 188
Query: 69 PETIGSLRXXXXXXXXXXXXXXXPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLC 128
PE + +L P+ SLE + A +N++ ELP + NL L ++
Sbjct: 189 PE-LQNLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNNILEELP-ELQNLPFLTTIY 243
Query: 129 LNNNNIGQIP 138
+NN + +P
Sbjct: 244 ADNNLLKTLP 253
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 3 ISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDEL 49
S ++R+ L +N I L P L+SL + L GN+IT LP L
Sbjct: 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 3 ISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDEL 49
S ++R+ L +N I L P L+SL + L GN+IT LP L
Sbjct: 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 100 SLEELQANDNLIG-ELPASIC-----NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 153
SLE+L +N++ +C L HL+ L LN+N + +P + AL+ +SL
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 154 HNNPISM 160
++N +++
Sbjct: 512 NSNRLTV 518
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 6 LINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGN 63
L N++ + N + ++P GK+ LK + L N++ S+PD +L L+++ + N
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Query: 64 MLTC 67
C
Sbjct: 229 PWDC 232
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 34 VMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG 73
+ L GNR T +P +L RL + S+ GN T + T+G
Sbjct: 316 IAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLG 355
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 121 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161
L L L L +NN+ +P +L + L + LH+NP + D
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 101 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
LE LQ + NL+ ++ N L L +L L +N + +P + L+ + L NNPI
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 101 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158
LE LQ + NL+ ++ N L L +L L +N + +P + L+ + L NNPI
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 104 LQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159
L+ ND + LP I N L +L ++NNN+ +I + + +LQN+ L +N ++
Sbjct: 130 LERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 92 PESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQN 150
P S L L N + LP + + L L L L+ N + IP + + K+L +
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTH 116
Query: 151 ISLHNNP 157
I L NNP
Sbjct: 117 IYLFNNP 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,672,291
Number of Sequences: 62578
Number of extensions: 149563
Number of successful extensions: 456
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 154
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)