Query 028942
Match_columns 201
No_of_seqs 142 out of 2299
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 04:59:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617 Ras suppressor protein 99.8 7.1E-22 1.5E-26 132.5 -3.6 157 3-160 29-187 (264)
2 KOG4194 Membrane glycoprotein 99.7 3.7E-19 8.1E-24 138.9 2.1 175 3-178 265-447 (873)
3 KOG4194 Membrane glycoprotein 99.7 1.1E-17 2.4E-22 130.8 6.4 173 9-181 80-259 (873)
4 PLN00113 leucine-rich repeat r 99.7 8.6E-17 1.9E-21 138.7 11.0 155 4-158 161-320 (968)
5 KOG0444 Cytoskeletal regulator 99.7 1.8E-18 3.9E-23 136.6 -0.8 179 3-182 28-209 (1255)
6 PLN00113 leucine-rich repeat r 99.7 3.1E-16 6.6E-21 135.3 11.4 158 2-159 183-345 (968)
7 KOG0617 Ras suppressor protein 99.7 1.5E-18 3.3E-23 116.6 -3.8 158 1-159 50-212 (264)
8 KOG0444 Cytoskeletal regulator 99.7 2.3E-17 5.1E-22 130.4 1.9 83 76-159 222-304 (1255)
9 KOG0472 Leucine-rich repeat pr 99.6 3.9E-17 8.5E-22 122.7 -5.1 154 3-159 133-310 (565)
10 KOG0472 Leucine-rich repeat pr 99.5 2.8E-17 6.1E-22 123.5 -7.0 156 3-159 110-265 (565)
11 KOG0532 Leucine-rich repeat (L 99.5 2.4E-16 5.1E-21 123.0 -3.8 154 4-160 95-248 (722)
12 PF14580 LRR_9: Leucine-rich r 99.5 8.2E-14 1.8E-18 96.1 6.1 124 29-154 18-148 (175)
13 PF14580 LRR_9: Leucine-rich r 99.5 1.2E-13 2.6E-18 95.3 5.7 104 54-159 20-126 (175)
14 PRK15370 E3 ubiquitin-protein 99.4 1E-12 2.2E-17 109.3 11.5 120 31-159 242-380 (754)
15 PRK15387 E3 ubiquitin-protein 99.4 6.5E-13 1.4E-17 110.2 9.2 106 54-166 343-465 (788)
16 PRK15370 E3 ubiquitin-protein 99.4 4.7E-13 1E-17 111.2 6.4 151 8-166 263-435 (754)
17 KOG0618 Serine/threonine phosp 99.4 6.2E-14 1.3E-18 114.9 -1.4 168 8-175 242-438 (1081)
18 KOG0618 Serine/threonine phosp 99.4 1.3E-13 2.8E-18 113.1 0.4 150 6-156 358-510 (1081)
19 cd00116 LRR_RI Leucine-rich re 99.3 1.8E-12 4E-17 98.6 5.9 155 5-159 79-263 (319)
20 cd00116 LRR_RI Leucine-rich re 99.3 8.9E-12 1.9E-16 94.8 7.1 159 7-165 108-297 (319)
21 KOG1259 Nischarin, modulator o 99.3 2.2E-12 4.8E-17 94.4 2.9 119 52-173 283-402 (490)
22 KOG4237 Extracellular matrix p 99.3 2.2E-13 4.8E-18 102.4 -2.5 63 97-159 272-335 (498)
23 COG4886 Leucine-rich repeat (L 99.3 6E-12 1.3E-16 98.7 4.9 151 7-159 116-290 (394)
24 PRK15387 E3 ubiquitin-protein 99.3 4.4E-11 9.6E-16 99.4 9.9 95 9-115 224-318 (788)
25 KOG0532 Leucine-rich repeat (L 99.2 3.2E-13 7E-18 105.8 -3.8 148 10-160 78-225 (722)
26 KOG1259 Nischarin, modulator o 99.2 1.9E-12 4.2E-17 94.6 -0.3 155 3-159 280-440 (490)
27 COG4886 Leucine-rich repeat (L 99.2 2E-11 4.4E-16 95.7 4.6 124 11-134 97-221 (394)
28 PLN03210 Resistant to P. syrin 99.1 3.7E-10 8E-15 99.2 10.9 144 9-159 591-738 (1153)
29 PLN03210 Resistant to P. syrin 99.1 5.7E-10 1.2E-14 98.0 11.7 152 2-157 553-715 (1153)
30 KOG4237 Extracellular matrix p 99.1 1.3E-11 2.8E-16 93.1 -0.5 79 9-87 69-151 (498)
31 KOG3207 Beta-tubulin folding c 98.9 2.2E-10 4.8E-15 87.5 1.1 172 5-176 144-332 (505)
32 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.2E-14 62.8 2.9 60 99-158 1-61 (61)
33 KOG4579 Leucine-rich repeat (L 98.9 1.7E-10 3.7E-15 75.1 -1.3 110 31-140 28-141 (177)
34 KOG1909 Ran GTPase-activating 98.9 1.2E-09 2.6E-14 81.3 2.4 160 3-162 88-286 (382)
35 PF13855 LRR_8: Leucine rich r 98.8 5.4E-09 1.2E-13 59.7 3.8 57 8-64 2-60 (61)
36 KOG3207 Beta-tubulin folding c 98.8 6.4E-10 1.4E-14 85.0 -0.2 156 5-160 119-285 (505)
37 PLN03150 hypothetical protein; 98.8 2.9E-08 6.4E-13 82.1 9.4 104 55-158 420-527 (623)
38 KOG1859 Leucine-rich repeat pr 98.8 1.8E-10 3.9E-15 93.2 -4.3 128 32-161 166-294 (1096)
39 KOG0531 Protein phosphatase 1, 98.8 6.8E-10 1.5E-14 87.6 -1.5 108 3-112 91-199 (414)
40 PLN03150 hypothetical protein; 98.7 5.4E-08 1.2E-12 80.5 8.7 104 31-134 419-527 (623)
41 KOG0531 Protein phosphatase 1, 98.7 1.8E-09 4E-14 85.2 -0.0 130 6-137 71-201 (414)
42 KOG1909 Ran GTPase-activating 98.7 7.6E-09 1.6E-13 77.2 2.2 158 4-161 27-228 (382)
43 KOG1859 Leucine-rich repeat pr 98.7 4.8E-10 1E-14 90.8 -4.7 170 2-175 104-284 (1096)
44 KOG4579 Leucine-rich repeat (L 98.6 6.9E-09 1.5E-13 67.7 -1.1 109 9-117 29-141 (177)
45 KOG1644 U2-associated snRNP A' 98.5 3.1E-07 6.8E-12 63.9 5.5 121 10-131 22-149 (233)
46 KOG4658 Apoptotic ATPase [Sign 98.5 3.1E-07 6.6E-12 78.4 5.8 126 7-133 523-653 (889)
47 PF12799 LRR_4: Leucine Rich r 98.4 6.1E-07 1.3E-11 47.3 3.4 38 8-45 2-39 (44)
48 KOG1644 U2-associated snRNP A' 98.3 6.7E-07 1.4E-11 62.3 4.2 126 32-158 21-152 (233)
49 KOG4658 Apoptotic ATPase [Sign 98.3 5.5E-07 1.2E-11 76.9 4.1 104 6-109 544-652 (889)
50 PF12799 LRR_4: Leucine Rich r 98.3 1.3E-06 2.7E-11 46.1 4.1 37 55-91 3-39 (44)
51 KOG2982 Uncharacterized conser 98.3 1.1E-07 2.3E-12 70.0 -0.5 59 30-88 71-133 (418)
52 KOG3665 ZYG-1-like serine/thre 98.2 7E-07 1.5E-11 74.4 2.7 145 7-152 122-281 (699)
53 KOG2982 Uncharacterized conser 98.2 6.6E-07 1.4E-11 66.0 1.3 172 6-177 70-256 (418)
54 PRK15386 type III secretion pr 98.1 1E-05 2.2E-10 63.1 7.0 73 4-87 49-123 (426)
55 KOG2120 SCF ubiquitin ligase, 98.1 1.5E-07 3.2E-12 69.3 -3.2 148 9-156 187-373 (419)
56 COG5238 RNA1 Ran GTPase-activa 98.1 8E-06 1.7E-10 59.7 5.6 156 5-160 28-228 (388)
57 COG5238 RNA1 Ran GTPase-activa 98.0 8E-06 1.7E-10 59.7 4.4 160 3-162 88-288 (388)
58 KOG2120 SCF ubiquitin ligase, 97.9 6.7E-07 1.5E-11 66.0 -2.6 146 4-149 207-390 (419)
59 KOG3665 ZYG-1-like serine/thre 97.7 5.5E-05 1.2E-09 63.4 4.8 136 30-166 122-270 (699)
60 PRK15386 type III secretion pr 97.6 0.00042 9.1E-09 54.3 8.2 117 26-156 48-187 (426)
61 KOG2123 Uncharacterized conser 97.6 7.3E-06 1.6E-10 60.1 -1.9 81 29-111 18-100 (388)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00078 1.7E-08 44.2 6.8 117 26-148 8-128 (129)
63 PF13306 LRR_5: Leucine rich r 97.3 0.0017 3.6E-08 42.6 7.1 117 2-124 7-128 (129)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.3E-09 52.6 2.2 84 29-113 42-130 (260)
65 KOG2123 Uncharacterized conser 97.1 6.2E-05 1.3E-09 55.4 -1.2 100 51-152 17-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00062 1.3E-08 49.5 2.3 97 55-152 45-149 (260)
67 PF00560 LRR_1: Leucine Rich R 96.6 0.0011 2.3E-08 29.2 0.9 20 8-27 1-20 (22)
68 PF00560 LRR_1: Leucine Rich R 96.2 0.0031 6.6E-08 27.7 1.2 17 55-71 2-18 (22)
69 KOG4308 LRR-containing protein 95.5 0.00013 2.9E-09 58.5 -8.2 87 75-161 203-305 (478)
70 PF13504 LRR_7: Leucine rich r 95.4 0.014 3.1E-07 23.8 1.7 13 55-67 3-15 (17)
71 smart00370 LRR Leucine-rich re 94.5 0.042 9.1E-07 25.0 2.1 21 122-142 2-22 (26)
72 smart00369 LRR_TYP Leucine-ric 94.5 0.042 9.1E-07 25.0 2.1 21 122-142 2-22 (26)
73 KOG1947 Leucine rich repeat pr 94.1 0.016 3.6E-07 46.6 0.5 104 6-109 187-305 (482)
74 PF13516 LRR_6: Leucine Rich r 93.2 0.029 6.4E-07 25.0 0.2 21 145-165 1-21 (24)
75 KOG4308 LRR-containing protein 93.1 0.00092 2E-08 53.8 -8.2 160 9-168 89-284 (478)
76 KOG1947 Leucine rich repeat pr 91.8 0.068 1.5E-06 43.0 0.9 126 29-154 187-329 (482)
77 KOG0473 Leucine-rich repeat pr 90.8 0.0035 7.7E-08 45.3 -6.5 84 51-134 40-123 (326)
78 smart00368 LRR_RI Leucine rich 89.2 0.29 6.3E-06 22.7 1.4 21 146-166 2-22 (28)
79 KOG0473 Leucine-rich repeat pr 87.4 0.015 3.2E-07 42.2 -5.4 87 26-112 38-124 (326)
80 TIGR00864 PCC polycystin catio 87.0 0.48 1E-05 45.8 2.5 43 128-172 1-43 (2740)
81 KOG3864 Uncharacterized conser 86.3 0.4 8.6E-06 34.1 1.3 81 100-180 102-186 (221)
82 smart00365 LRR_SD22 Leucine-ri 84.4 0.97 2.1E-05 20.6 1.7 15 7-21 2-16 (26)
83 KOG4341 F-box protein containi 83.3 0.84 1.8E-05 36.2 2.0 108 51-158 292-413 (483)
84 smart00364 LRR_BAC Leucine-ric 81.7 1.2 2.7E-05 20.3 1.4 15 101-115 4-18 (26)
85 smart00367 LRR_CC Leucine-rich 81.4 1.1 2.3E-05 20.2 1.2 21 145-165 1-22 (26)
86 KOG3763 mRNA export factor TAP 80.5 0.96 2.1E-05 37.0 1.4 62 97-159 216-283 (585)
87 KOG3864 Uncharacterized conser 73.5 0.59 1.3E-05 33.3 -1.3 34 121-154 150-184 (221)
88 KOG3763 mRNA export factor TAP 68.7 3.6 7.9E-05 33.9 1.9 34 53-86 218-254 (585)
89 KOG4341 F-box protein containi 66.0 3.7 8.1E-05 32.7 1.5 128 29-156 293-436 (483)
90 TIGR00864 PCC polycystin catio 21.3 85 0.0018 31.9 2.7 31 13-43 1-32 (2740)
No 1
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.80 E-value=7.1e-22 Score=132.46 Aligned_cols=157 Identities=30% Similarity=0.504 Sum_probs=145.1
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+.++..++.|-+++|.++.+|+.++.+.+|+.+++.+|++.++|.+++.+++|+.|.++.|++..+|.+|+.++.|+.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 34566777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCC--cCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942 83 VSNNKLK--SLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 83 l~~~~~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
++.|++. .+|..|+.+..|+.|.++.|.+..+|...+.+++|+.|.+..|.+-++|++ ++.+..|++|.+++|.++.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeee
Confidence 9999988 578889999999999999999999999999999999999999999999987 4778889999999998774
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=3.7e-19 Score=138.94 Aligned_cols=175 Identities=25% Similarity=0.312 Sum_probs=132.8
Q ss_pred cccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccc-hhhhcCCCCC
Q 028942 3 ISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLV 79 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~ 79 (201)
|..|.+++.|+++.|.++.+ ..++.+++.|+.|++++|.+..+ ++++.-+++|++|+++.|++++++ ..|..+..|+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 45566677777777777765 44566677788888888877755 456667788888888888888874 4677788888
Q ss_pred EEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCC----cCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecc
Q 028942 80 LLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG----ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 154 (201)
Q Consensus 80 ~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~ 154 (201)
+|++++|.+..+.. .+..+.+|+.|++.+|.++ +-...+..++.|+.|++.+|++..+++..|.++.+|++|++.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 88888888887644 4566788999999999776 333457779999999999999999999999999999999999
Q ss_pred cCCCChhhhccccChhHHHHHHhh
Q 028942 155 NNPISMDQFQQMEGFEEFEARRRK 178 (201)
Q Consensus 155 ~n~l~~~~~~~l~~~~~l~~~~~~ 178 (201)
+|+|-...+..+..+ +|+.....
T Consensus 425 ~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred CCcceeecccccccc-hhhhhhhc
Confidence 999865544454444 55544443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-17 Score=130.84 Aligned_cols=173 Identities=24% Similarity=0.348 Sum_probs=148.5
Q ss_pred ccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCC
Q 028942 9 IQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNN 86 (201)
Q Consensus 9 L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 86 (201)
.+.|++++|.+..+. ..|.++++|+.+.+.+|.++.+|.......+++.|++.+|.|+++ ...+..++.|+++|++.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 346899999999874 457899999999999999999998777777899999999999988 567888999999999999
Q ss_pred CCCcCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC---hh
Q 028942 87 KLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS---MD 161 (201)
Q Consensus 87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~---~~ 161 (201)
.|++++. .+..-.+++.|++++|.|+.+.. .+..+.+|..|.|++|.++.+|..+|..+++|+.|++..|.|. ..
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 9998875 55666889999999999998853 5667778999999999999999999999999999999999886 56
Q ss_pred hhccccChhHHHHHHhhccc
Q 028942 162 QFQQMEGFEEFEARRRKKFD 181 (201)
Q Consensus 162 ~~~~l~~~~~l~~~~~~~~~ 181 (201)
.++.+.+++.++..++..++
T Consensus 240 tFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred hhcCchhhhhhhhhhcCccc
Confidence 77778888877777766653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=8.6e-17 Score=138.67 Aligned_cols=155 Identities=30% Similarity=0.446 Sum_probs=71.7
Q ss_pred ccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCCCE
Q 028942 4 SKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVL 80 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~ 80 (201)
.++++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+.+|++|++++|.+.. +|..+..+++|++
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 34445555555555443 33444444555555555554443 234444444555555555554442 3444445555555
Q ss_pred EEeeCCCCC-cCcccccCCCCCceEEcCCCcCC-cCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCC
Q 028942 81 LNVSNNKLK-SLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158 (201)
Q Consensus 81 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l 158 (201)
|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.......+..+++|+.|++.+|.+
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 555555443 23444444455555555554443 3334444444455555554444322222234444444444444444
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=1.8e-18 Score=136.65 Aligned_cols=179 Identities=26% Similarity=0.444 Sum_probs=150.7
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCc--ccchhhhcCCCCCE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT--CLPETIGSLRNLVL 80 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~ 80 (201)
+..|++++||.+....+..+|..++.+.+|+.|.+.+|++..+...++.+++|+.+.+..|++. .+|+.+..+..|.+
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence 3456677777777777777888888888888888888888777777788888888888888876 57888999999999
Q ss_pred EEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 81 LNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 81 L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
|++++|++.++|..+.+-+++-.|++++|.|..+|.. +-++..|-.|+|++|.+..+|+. .+.+..|+.|++++||+.
T Consensus 108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 108 LDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred eecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhh
Confidence 9999999999999998889999999999999999875 45677888999999999999998 478899999999999998
Q ss_pred hhhhccccChhHHHHHHhhcccc
Q 028942 160 MDQFQQMEGFEEFEARRRKKFDK 182 (201)
Q Consensus 160 ~~~~~~l~~~~~l~~~~~~~~~~ 182 (201)
-.....++++..|........+.
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccc
Confidence 88888888888888777665543
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.68 E-value=3.1e-16 Score=135.30 Aligned_cols=158 Identities=33% Similarity=0.480 Sum_probs=106.8
Q ss_pred ccccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCC
Q 028942 2 EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNL 78 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L 78 (201)
.+.++++|+.|++++|.+. .+|..+..+.+|+.+++++|.+. .+|..+..+++|++|++++|.+.. +|..+..+.+|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 3567778888888888776 45777777788888888877776 557777777777788777777663 46667777777
Q ss_pred CEEEeeCCCCC-cCcccccCCCCCceEEcCCCcCC-cCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942 79 VLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 79 ~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n 156 (201)
++|++.+|.+. .+|..+..+.+|+.|++++|.++ .+|..+..+++|+.|++++|.+.......+..+++|+.|++.+|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 77777777665 44556666677777777776665 45555566666666666666664333333555666666666666
Q ss_pred CCC
Q 028942 157 PIS 159 (201)
Q Consensus 157 ~l~ 159 (201)
.+.
T Consensus 343 ~l~ 345 (968)
T PLN00113 343 KFS 345 (968)
T ss_pred CCc
Confidence 554
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.5e-18 Score=116.58 Aligned_cols=158 Identities=29% Similarity=0.476 Sum_probs=140.9
Q ss_pred CccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCc--ccchhhhcCCCC
Q 028942 1 MEISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT--CLPETIGSLRNL 78 (201)
Q Consensus 1 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L 78 (201)
+.++.+.+|+.|++.+|+++.+|.+++.+++|+.+++.-|.+..+|.+|..++.|..||+.+|.+. .+|..|..+..|
T Consensus 50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999987 478889999999
Q ss_pred CEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCc---cCCeEeccc
Q 028942 79 VLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCK---ALQNISLHN 155 (201)
Q Consensus 79 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~---~L~~l~l~~ 155 (201)
+.|.++.|.+..+|+.+..+++|+.|.+..|.+-++|..++.++.|+.|++++|.++-+|+++ .++. +-+...+.+
T Consensus 130 ralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel-~~l~l~~~k~v~r~E~ 208 (264)
T KOG0617|consen 130 RALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPEL-ANLDLVGNKQVMRMEE 208 (264)
T ss_pred HHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhh-hhhhhhhhHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999888763 3322 223456677
Q ss_pred CCCC
Q 028942 156 NPIS 159 (201)
Q Consensus 156 n~l~ 159 (201)
|++-
T Consensus 209 NPwv 212 (264)
T KOG0617|consen 209 NPWV 212 (264)
T ss_pred CCCC
Confidence 7654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=2.3e-17 Score=130.44 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=37.7
Q ss_pred CCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942 76 RNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 155 (201)
Q Consensus 76 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~ 155 (201)
.+|..++++.|.+..+|.++..+++|+.|++++|.|+.+......+.++++|++++|+++.+|.. +..++.|+.|...+
T Consensus 222 ~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYANN 300 (1255)
T ss_pred hhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH-HhhhHHHHHHHhcc
Confidence 33333344444444444444444444444444444444443344444444444444544444443 24444455555555
Q ss_pred CCCC
Q 028942 156 NPIS 159 (201)
Q Consensus 156 n~l~ 159 (201)
|.+.
T Consensus 301 NkL~ 304 (1255)
T KOG0444|consen 301 NKLT 304 (1255)
T ss_pred Cccc
Confidence 5544
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.56 E-value=3.9e-17 Score=122.69 Aligned_cols=154 Identities=34% Similarity=0.603 Sum_probs=89.4
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+..+..++.++-.+|++..+|..+..+.++..+++.+|.+..+|.....|..|++++...|-+..+|+.++.+.+|+.|+
T Consensus 133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY 212 (565)
T ss_pred HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH
Confidence 33444555555555666666666666666666666666666665555556667777776666666776666666666666
Q ss_pred eeCCCCCcCcccccCC------------------------CCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccC
Q 028942 83 VSNNKLKSLPESIGSC------------------------YSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIP 138 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~------------------------~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~ 138 (201)
+..|.+..+| .|..| +++..|++..|.++++|..+.-+.+|.+||+++|.++.+|
T Consensus 213 L~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 213 LRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred hhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCC
Confidence 6666666554 23444 4445555555555555555555555555555555555555
Q ss_pred hhhhhcCccCCeEecccCCCC
Q 028942 139 ANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 139 ~~~~~~~~~L~~l~l~~n~l~ 159 (201)
.. ++++ +|+.+.+.+||+.
T Consensus 292 ~s-Lgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 292 YS-LGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cc-cccc-eeeehhhcCCchH
Confidence 43 3444 5555555555543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.55 E-value=2.8e-17 Score=123.47 Aligned_cols=156 Identities=33% Similarity=0.505 Sum_probs=112.2
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+.++..+..++++.|.+..+++.++.+..+..++..+|++..+|.++..+.++..+++.+|.+..+|+..-.+..|+.++
T Consensus 110 i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD 189 (565)
T ss_pred HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence 44556667777777777777777777778888888888888888777777788888888888888777666688889999
Q ss_pred eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
...|.++.+|+.++.+.+|..|++..|.+..+| .+..|..|..++++.|.+..+|++...+++++..+|+..|++.
T Consensus 190 ~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred cchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence 999999999998888999998888888887766 3444555555555555554444444444444445555555444
No 11
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.53 E-value=2.4e-16 Score=122.96 Aligned_cols=154 Identities=34% Similarity=0.600 Sum_probs=135.3
Q ss_pred ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEe
Q 028942 4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNV 83 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 83 (201)
+.+..|+.+.+..|.+..+|..+..+..|++++++.|+++.+|..++.++ |+.|-+++|+++.+|..++....|..++.
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhh
Confidence 34455666777778888888888888999999999999999998888777 88999999999999888888888999999
Q ss_pred eCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942 84 SNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
+.|.+..+|..+..+.+|+.+++.+|.+..+|..+..++ |..||+++|.+..+|.. |..+.+|++|-|++|+++.
T Consensus 174 s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 174 SKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchh-hhhhhhheeeeeccCCCCC
Confidence 999999999889999999999999999999999888555 88999999999999987 7999999999999999974
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.48 E-value=8.2e-14 Score=96.05 Aligned_cols=124 Identities=28% Similarity=0.423 Sum_probs=44.6
Q ss_pred CCCCcEEeccCCCCccCchhhh-CcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccc-cCCCCCceEEc
Q 028942 29 LQSLKVMTLDGNRITSLPDELG-QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQA 106 (201)
Q Consensus 29 l~~L~~l~l~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l 106 (201)
...++.|++.++.++.+. .+. .+.+++.|++++|.++.+ +++..+..|++|++++|.++.+...+ ..+++|+.|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 345666777777666553 232 356667777777777766 34566677777777777777664433 34667777777
Q ss_pred CCCcCCcCC--hhhhCCCccceEEccCCcCCccCh---hhhhcCccCCeEecc
Q 028942 107 NDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLH 154 (201)
Q Consensus 107 ~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~l~l~ 154 (201)
++|.|.++. ..+..++.|+.|++.+|++...+. .++..+|+|+.||-.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777766543 345667778888888888755443 467778888877753
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.46 E-value=1.2e-13 Score=95.26 Aligned_cols=104 Identities=29% Similarity=0.506 Sum_probs=23.3
Q ss_pred CCCEEEecCCcCcccchhhh-cCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhh-hCCCccceEEccC
Q 028942 54 RLERLSILGNMLTCLPETIG-SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNN 131 (201)
Q Consensus 54 ~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-~~~~~L~~L~l~~ 131 (201)
.+++|++.+|.++.+. .+. .+.+|+.|++++|.+..+. .+..++.|+.|++++|.++++...+ ..+++|+.|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 3455555555544442 222 2344555555555554442 2334445555555555555443322 2344455555555
Q ss_pred CcCCccCh-hhhhcCccCCeEecccCCCC
Q 028942 132 NNIGQIPA-NLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 132 ~~l~~~~~-~~~~~~~~L~~l~l~~n~l~ 159 (201)
|.|..+.. ..+..+++|+.|++.+||+.
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55433222 22344455555555555543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=1e-12 Score=109.27 Aligned_cols=120 Identities=31% Similarity=0.538 Sum_probs=61.2
Q ss_pred CCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCccccc--------------
Q 028942 31 SLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG-------------- 96 (201)
Q Consensus 31 ~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------- 96 (201)
+|+.|++++|.+..+|..+. ..|+.|++++|+++.+|..+. .+|+.|++++|.+..+|..+.
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT 317 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccc
Confidence 34444444444444443321 245555555555554443322 245555555555544332110
Q ss_pred -----CCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 97 -----SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 97 -----~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
..++|+.|++++|.++.+|..+ .++|+.|++++|.+..+|..+ .+.|+.|++.+|.++
T Consensus 318 ~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 318 ALPETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL---PPTITTLDVSRNALT 380 (754)
T ss_pred cCCccccccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh---cCCcCEEECCCCcCC
Confidence 1134555555555555554433 246777777777776666543 246777777777765
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=6.5e-13 Score=110.15 Aligned_cols=106 Identities=31% Similarity=0.390 Sum_probs=73.5
Q ss_pred CCCEEEecCCcCcccchhhh-----------------cCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCCh
Q 028942 54 RLERLSILGNMLTCLPETIG-----------------SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 116 (201)
Q Consensus 54 ~L~~L~l~~~~~~~~~~~~~-----------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 116 (201)
.|+.|++++|+++.+|.... ...+|+.|++++|.+..+|.. ...|+.|++++|.++.+|.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM 419 (788)
T ss_pred ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc
Confidence 46666666666665543111 113466667777766666543 2467778888888877764
Q ss_pred hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhhccc
Q 028942 117 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM 166 (201)
Q Consensus 117 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l 166 (201)
. ...|+.|++++|.+..+|.. +..++.|..+++++|+++......+
T Consensus 420 l---~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 420 L---PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred c---hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCchHHHHH
Confidence 3 34577889999999888876 5788999999999999997665544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=4.7e-13 Score=111.19 Aligned_cols=151 Identities=29% Similarity=0.421 Sum_probs=100.4
Q ss_pred CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhh-------------------CcCCCCEEEecCCcCccc
Q 028942 8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELG-------------------QLVRLERLSILGNMLTCL 68 (201)
Q Consensus 8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~-------------------~l~~L~~L~l~~~~~~~~ 68 (201)
+|+.|++++|.+..+|..+. .+|+.|++++|.++.+|..+. ..++|+.|++++|.++.+
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~L 340 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSL 340 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccC
Confidence 67888888888887776553 478888888887776553221 113456666666666666
Q ss_pred chhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChh---hhhcC
Q 028942 69 PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPAN---LLKDC 145 (201)
Q Consensus 69 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~ 145 (201)
|..+. ++|+.|++++|.+..+|..+ .+.|+.|++++|.++.+|..+. ..|+.|++++|.+..+|.. ....+
T Consensus 341 P~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~ 414 (754)
T PRK15370 341 PASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEG 414 (754)
T ss_pred Chhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcC
Confidence 54432 46777777777777666543 3567777887777777776543 3577778888888776653 23345
Q ss_pred ccCCeEecccCCCChhhhccc
Q 028942 146 KALQNISLHNNPISMDQFQQM 166 (201)
Q Consensus 146 ~~L~~l~l~~n~l~~~~~~~l 166 (201)
+.+..+++.+|+++...+..+
T Consensus 415 ~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 415 PQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred CCccEEEeeCCCccHHHHHHH
Confidence 778889999999986544443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=6.2e-14 Score=114.94 Aligned_cols=168 Identities=27% Similarity=0.440 Sum_probs=118.2
Q ss_pred CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCC
Q 028942 8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNK 87 (201)
Q Consensus 8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 87 (201)
++++++++.|.+..+|.....+.+++.+...+|.++.+|..+....+|+.|.+..|.+..+|+...+..+|++|++..|.
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 56677778888888887778888888888888888877777777777777777777777777777777788888888877
Q ss_pred CCcCccccc--------------------------CCCCCceEEcCCCcCCc-CChhhhCCCccceEEccCCcCCccChh
Q 028942 88 LKSLPESIG--------------------------SCYSLEELQANDNLIGE-LPASICNLIHLKSLCLNNNNIGQIPAN 140 (201)
Q Consensus 88 ~~~~~~~~~--------------------------~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~ 140 (201)
+..+|..+. ..+.|+.|.+.+|.+++ .-..+.+.+.|+.|+|++|.+.++|+.
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 765554221 11233444455555552 223456677888888888888888887
Q ss_pred hhhcCccCCeEecccCCCC--hhhhccccChhHHHHH
Q 028942 141 LLKDCKALQNISLHNNPIS--MDQFQQMEGFEEFEAR 175 (201)
Q Consensus 141 ~~~~~~~L~~l~l~~n~l~--~~~~~~l~~~~~l~~~ 175 (201)
.+..+..|++|++++|+++ .+.+..+..+..|.+-
T Consensus 402 ~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence 7888888888888888876 3444455555555543
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-13 Score=113.12 Aligned_cols=150 Identities=31% Similarity=0.384 Sum_probs=121.5
Q ss_pred CCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEe
Q 028942 6 LINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNV 83 (201)
Q Consensus 6 l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 83 (201)
+..|+.|++.+|.++ ..-+.+.++.+|+.|++++|.+..+|.. +.++..|++|++++|+++.+|..+..+..|++|..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 345667888888888 3455677789999999999999999765 57889999999999999999988899999999999
Q ss_pred eCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhh-CCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942 84 SNNKLKSLPESIGSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n 156 (201)
.+|.+..+| .+...++|+.+|++.|.++.+--... .++.|++|++++|.-..+....+..+.++...++.-+
T Consensus 438 hsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 438 HSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 999998888 67889999999999998885532222 2388999999999876666666777777777776655
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=1.8e-12 Score=98.62 Aligned_cols=155 Identities=30% Similarity=0.350 Sum_probs=71.9
Q ss_pred cCCCccEEecCCCcCcc-cCccccCCC---CCcEEeccCCCCcc-----CchhhhCc-CCCCEEEecCCcCcc-----cc
Q 028942 5 KLINIQRLVLDDNHIER-LPVNLGKLQ---SLKVMTLDGNRITS-----LPDELGQL-VRLERLSILGNMLTC-----LP 69 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~~-l~~~~~~l~---~L~~l~l~~~~l~~-----~~~~~~~l-~~L~~L~l~~~~~~~-----~~ 69 (201)
.+++|+.|++++|.+.. .+..+..+. +|+.+++++|.+.. +...+..+ +.|+.|++++|.++. ++
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 34556666666655542 222222222 26666665555541 12233334 555666666665551 22
Q ss_pred hhhhcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCcC-----ChhhhCCCccceEEccCCcCCccCh
Q 028942 70 ETIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGEL-----PASICNLIHLKSLCLNNNNIGQIPA 139 (201)
Q Consensus 70 ~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~ 139 (201)
..+..+..|++|++.+|.+.. ++..+...+.|+.|++++|.++.. ...+..++.|+.|++++|.+.....
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 233444556666665555541 122233344566666665555421 2233444556666666555532111
Q ss_pred -hhhh----cCccCCeEecccCCCC
Q 028942 140 -NLLK----DCKALQNISLHNNPIS 159 (201)
Q Consensus 140 -~~~~----~~~~L~~l~l~~n~l~ 159 (201)
.+.. ..+.|+++++.+|.++
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCC
Confidence 1111 1245555666555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=8.9e-12 Score=94.85 Aligned_cols=159 Identities=29% Similarity=0.355 Sum_probs=119.1
Q ss_pred CCccEEecCCCcCcc-----cCccccCC-CCCcEEeccCCCCc-----cCchhhhCcCCCCEEEecCCcCcc-----cch
Q 028942 7 INIQRLVLDDNHIER-----LPVNLGKL-QSLKVMTLDGNRIT-----SLPDELGQLVRLERLSILGNMLTC-----LPE 70 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~-----l~~~~~~l-~~L~~l~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~~~ 70 (201)
++|+.|++++|.+.. +...+..+ ++|+.+++++|.++ .++..+..+..+++|++++|.++. ++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 459999999998872 34456667 89999999999988 334456677889999999998873 344
Q ss_pred hhhcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCcCC--hhhh----CCCccceEEccCCcCCccC-
Q 028942 71 TIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGELP--ASIC----NLIHLKSLCLNNNNIGQIP- 138 (201)
Q Consensus 71 ~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~----~~~~L~~L~l~~~~l~~~~- 138 (201)
.+...++|+.|++++|.+.. +...+..+++|+.|++++|.+++.. .... ..+.|+.|++++|.++...
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 55666799999999998862 3445667899999999999888421 1111 2478999999999985221
Q ss_pred ---hhhhhcCccCCeEecccCCCChhhhcc
Q 028942 139 ---ANLLKDCKALQNISLHNNPISMDQFQQ 165 (201)
Q Consensus 139 ---~~~~~~~~~L~~l~l~~n~l~~~~~~~ 165 (201)
...+..+++|+.+++++|.++.++...
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 123566688999999999999775443
No 21
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.27 E-value=2.2e-12 Score=94.37 Aligned_cols=119 Identities=24% Similarity=0.374 Sum_probs=80.8
Q ss_pred cCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccC
Q 028942 52 LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNN 131 (201)
Q Consensus 52 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~ 131 (201)
|..|.++|+++|.++.+..+..-.+.++.|+++.|.+..+.. +..+++|+.|++++|.++.+......+.+.+.|.++.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 566778888888877777777777778888888887776644 6677788888888887777666555566667777777
Q ss_pred CcCCccChhhhhcCccCCeEecccCCCC-hhhhccccChhHHH
Q 028942 132 NNIGQIPANLLKDCKALQNISLHNNPIS-MDQFQQMEGFEEFE 173 (201)
Q Consensus 132 ~~l~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~l~~~~~l~ 173 (201)
|.+.++.. +..+-+|..|++.+|.|+ .+.++.+-++++|.
T Consensus 362 N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 362 NKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE 402 (490)
T ss_pred hhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHH
Confidence 77655543 355566777777777765 34444444444433
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=2.2e-13 Score=102.45 Aligned_cols=63 Identities=21% Similarity=0.355 Sum_probs=33.1
Q ss_pred CCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 97 SCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 97 ~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
.+++|+.+++++|.++.+. .++.....++.|.|..|.+..+...+|.++..|+.|++.+|.|+
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 4456666666666666553 23344444444444444444444444555555555555555554
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=6e-12 Score=98.69 Aligned_cols=151 Identities=38% Similarity=0.560 Sum_probs=92.8
Q ss_pred CCccEEecCCCcCcccCccccCCC-CCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeC
Q 028942 7 INIQRLVLDDNHIERLPVNLGKLQ-SLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSN 85 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~~~~~l~-~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 85 (201)
+.++.+.+.++.+..+++....+. +|+.++++.|.+..+|..+..++.|+.|+++.|++..+|........|+.+++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 445566666666666666555553 6666666666666665555566666666666666666655444555666666666
Q ss_pred CCCCcCcccccCCCCCceEEcC-----------------------CCcCCcCChhhhCCCccceEEccCCcCCccChhhh
Q 028942 86 NKLKSLPESIGSCYSLEELQAN-----------------------DNLIGELPASICNLIHLKSLCLNNNNIGQIPANLL 142 (201)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~L~l~-----------------------~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 142 (201)
|.+..+|........|..+.++ .|.+..++..++.++.++.|++++|.+..++. +
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~ 273 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--L 273 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--c
Confidence 6666555433333334444444 44444444555666677888888888877766 5
Q ss_pred hcCccCCeEecccCCCC
Q 028942 143 KDCKALQNISLHNNPIS 159 (201)
Q Consensus 143 ~~~~~L~~l~l~~n~l~ 159 (201)
....+++.++++++.+.
T Consensus 274 ~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 274 GSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccCccCEEeccCcccc
Confidence 66777888888877654
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=4.4e-11 Score=99.45 Aligned_cols=95 Identities=39% Similarity=0.511 Sum_probs=41.8
Q ss_pred ccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCC
Q 028942 9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL 88 (201)
Q Consensus 9 L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 88 (201)
|+.|.+.+|.++.+|.. .++|+.|++++|.++.+|.. .+.|+.|++++|.++.+|..+ .+|..|++.+|.+
T Consensus 224 L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~L 294 (788)
T PRK15387 224 ITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQL 294 (788)
T ss_pred CCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCCcc
Confidence 44444444444444421 24455555555555544321 123444444444443333211 2344444555544
Q ss_pred CcCcccccCCCCCceEEcCCCcCCcCC
Q 028942 89 KSLPESIGSCYSLEELQANDNLIGELP 115 (201)
Q Consensus 89 ~~~~~~~~~~~~L~~L~l~~n~i~~~~ 115 (201)
..+|.. .+.|+.|++++|.++.+|
T Consensus 295 t~LP~~---p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 295 TSLPVL---PPGLQELSVSDNQLASLP 318 (788)
T ss_pred cccccc---ccccceeECCCCccccCC
Confidence 444331 244556666665555443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=3.2e-13 Score=105.78 Aligned_cols=148 Identities=32% Similarity=0.447 Sum_probs=133.1
Q ss_pred cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCC
Q 028942 10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK 89 (201)
Q Consensus 10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 89 (201)
...+++.|.+..+|..+..+..|..+.+..|.+..+|..+..+..|.+++++.|+++.+|..+..++ |+.+.+++|++.
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc
Confidence 3467788888889988888889999999999999999999999999999999999999988876655 999999999999
Q ss_pred cCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942 90 SLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 90 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
.+|..+....+|..++.+.|.+..+|..++.+.+|+.|.+..|.+..+|.+.. .+ .|..||++.|++..
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~L-pLi~lDfScNkis~ 225 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SL-PLIRLDFSCNKISY 225 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CC-ceeeeecccCceee
Confidence 99998888899999999999999999999999999999999999999998853 44 58999999999873
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=1.9e-12 Score=94.65 Aligned_cols=155 Identities=28% Similarity=0.358 Sum_probs=112.8
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+...+.|+++++++|.|+.+..+..-.|.++.|++++|.+..+.. +..+++|+.||+++|.++.+...-..+.++++|.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 345667888888888888888888778888888888888887743 6778888888888888887744445677888888
Q ss_pred eeCCCCCcCcccccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEccCCcCCccChh---hhhcC-ccCCeEecccC
Q 028942 83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPAN---LLKDC-KALQNISLHNN 156 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~-~~L~~l~l~~n 156 (201)
+..|.+..+ ..+..+-+|..|++.+|+|..+. ..++.++-|+++.+.+|++..++.. ++... ..-.++.+++.
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~ 437 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLDNE 437 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecCCC
Confidence 888887766 34566777888888888887653 3567788888888888888766652 22222 12345666655
Q ss_pred CCC
Q 028942 157 PIS 159 (201)
Q Consensus 157 ~l~ 159 (201)
+-.
T Consensus 438 ~~~ 440 (490)
T KOG1259|consen 438 PGN 440 (490)
T ss_pred Ccc
Confidence 543
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=2e-11 Score=95.73 Aligned_cols=124 Identities=34% Similarity=0.467 Sum_probs=102.6
Q ss_pred EEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcC-CCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCC
Q 028942 11 RLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLV-RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK 89 (201)
Q Consensus 11 ~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 89 (201)
.+...++.+..-......+..++.+.+.++.+..++....... .|+.|++++|.+..+|..+..+++|+.|+++.|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 4566666654434445556889999999999999988777674 899999999999999878899999999999999999
Q ss_pred cCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcC
Q 028942 90 SLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNI 134 (201)
Q Consensus 90 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l 134 (201)
.++......+.|+.+++++|.++.+|........|..+.+++|.+
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI 221 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc
Confidence 998876688999999999999999988665666688888887743
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.14 E-value=3.7e-10 Score=99.18 Aligned_cols=144 Identities=25% Similarity=0.375 Sum_probs=68.0
Q ss_pred ccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCc-CcccchhhhcCCCCCEEEeeCCC
Q 028942 9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNM-LTCLPETIGSLRNLVLLNVSNNK 87 (201)
Q Consensus 9 L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 87 (201)
|+.|.+.++.+..+|..| ...+|+.|++.++.+..+|.++..+++|+.++++++. +..+| .+..+++|++|++.+|.
T Consensus 591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS 668 (1153)
T ss_pred cEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC
Confidence 333344444444444433 2345555555555555554444455555555555443 23333 24444555555555542
Q ss_pred -CCcCcccccCCCCCceEEcCCC-cCCcCChhhhCCCccceEEccCCcC-CccChhhhhcCccCCeEecccCCCC
Q 028942 88 -LKSLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 88 -~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
+..+|..+..+++|+.|++++| .++.+|..+ .+++|+.|++++|.. ..+|. ...+|+.|++.+|.+.
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE 738 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc
Confidence 3344555555555555555554 344444332 345555555555532 23221 1234566666666543
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.13 E-value=5.7e-10 Score=98.02 Aligned_cols=152 Identities=24% Similarity=0.381 Sum_probs=109.8
Q ss_pred ccccCCCccEEecCCCcC------c-ccCccccCCC-CCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhh
Q 028942 2 EISKLINIQRLVLDDNHI------E-RLPVNLGKLQ-SLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG 73 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l------~-~l~~~~~~l~-~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 73 (201)
.|.+|.+|+.|.+..+.. . .+|..+..++ +|+.|.+.++.+..+|..+ ...+|+.|++.++.+..++.++.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccc
Confidence 366788888887754432 1 3566666554 5888888888888887765 45678888888888887777777
Q ss_pred cCCCCCEEEeeCCC-CCcCcccccCCCCCceEEcCCC-cCCcCChhhhCCCccceEEccCCc-CCccChhhhhcCccCCe
Q 028942 74 SLRNLVLLNVSNNK-LKSLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQN 150 (201)
Q Consensus 74 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~ 150 (201)
.+.+|+.++++++. +..+|. +..+++|+.|++.+| .+..+|..+..+++|+.|++++|. +..+|..+ ++++|+.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~ 708 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYR 708 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCE
Confidence 78888888888764 445554 666788888888876 456777777888888888888764 56676643 6778888
Q ss_pred EecccCC
Q 028942 151 ISLHNNP 157 (201)
Q Consensus 151 l~l~~n~ 157 (201)
|++.+|.
T Consensus 709 L~Lsgc~ 715 (1153)
T PLN03210 709 LNLSGCS 715 (1153)
T ss_pred EeCCCCC
Confidence 8887764
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=1.3e-11 Score=93.07 Aligned_cols=79 Identities=32% Similarity=0.510 Sum_probs=52.8
Q ss_pred ccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecC-CcCcccch-hhhcCCCCCEEEee
Q 028942 9 IQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILG-NMLTCLPE-TIGSLRNLVLLNVS 84 (201)
Q Consensus 9 L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~ 84 (201)
..++.+..|.|+.+|+ +|..+++|+.+++++|.|+.| |.+|.++..+.+|.+-+ |+|+.+|. .|.++..++.|.++
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 3467788888888854 578888888888888888876 67778887766555544 77777653 23344444444444
Q ss_pred CCC
Q 028942 85 NNK 87 (201)
Q Consensus 85 ~~~ 87 (201)
-|.
T Consensus 149 an~ 151 (498)
T KOG4237|consen 149 ANH 151 (498)
T ss_pred hhh
Confidence 333
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.2e-10 Score=87.50 Aligned_cols=172 Identities=20% Similarity=0.256 Sum_probs=91.2
Q ss_pred cCCCccEEecCCCcCcc---cCccccCCCCCcEEeccCCCCccCchh--hhCcCCCCEEEecCCcCcc--cchhhhcCCC
Q 028942 5 KLINIQRLVLDDNHIER---LPVNLGKLQSLKVMTLDGNRITSLPDE--LGQLVRLERLSILGNMLTC--LPETIGSLRN 77 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~~---l~~~~~~l~~L~~l~l~~~~l~~~~~~--~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~ 77 (201)
.|+.++.|++++|=+.. +-....++++|+.|+++.|.+...... ...+++++.|.++.|.++. +...+..+++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 35555566666655442 222234556666666666655532111 1234556666666666552 2233344556
Q ss_pred CCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEccCCcCCccC--h----hhhhcCccC
Q 028942 78 LVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIP--A----NLLKDCKAL 148 (201)
Q Consensus 78 L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~--~----~~~~~~~~L 148 (201)
++.|++..|....+ ......+..|+.|++++|++-+++ ...+.++.|+.|.++.+.+.++. + ......++|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 66666666531111 111233456777777777766554 34566777777777777774432 1 123456778
Q ss_pred CeEecccCCCC-hhhhccccChhHHHHHH
Q 028942 149 QNISLHNNPIS-MDQFQQMEGFEEFEARR 176 (201)
Q Consensus 149 ~~l~l~~n~l~-~~~~~~l~~~~~l~~~~ 176 (201)
++|++..|+|. ..-+..+..++.++.++
T Consensus 304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred eeeecccCccccccccchhhccchhhhhh
Confidence 88888888873 33333444444444433
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=1e-09 Score=62.78 Aligned_cols=60 Identities=35% Similarity=0.562 Sum_probs=43.2
Q ss_pred CCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCC
Q 028942 99 YSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158 (201)
Q Consensus 99 ~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l 158 (201)
++|+.|++++|.++.++. .+..+++|++|++++|.+..++..++.++++|+++++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356677777777776663 566677777777777777777777777777778887777764
No 33
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.88 E-value=1.7e-10 Score=75.12 Aligned_cols=110 Identities=22% Similarity=0.318 Sum_probs=72.0
Q ss_pred CCcEEeccCCCCccCchhhhC---cCCCCEEEecCCcCcccchhhhc-CCCCCEEEeeCCCCCcCcccccCCCCCceEEc
Q 028942 31 SLKVMTLDGNRITSLPDELGQ---LVRLERLSILGNMLTCLPETIGS-LRNLVLLNVSNNKLKSLPESIGSCYSLEELQA 106 (201)
Q Consensus 31 ~L~~l~l~~~~l~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 106 (201)
.+..++++.|++..+++.... ...|...++++|.+..+|+.|.. .+.++++++.+|.++.+|..+..++.|+.+++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 344566677776666555433 33455667777777777766643 34667777777777777766777777777777
Q ss_pred CCCcCCcCChhhhCCCccceEEccCCcCCccChh
Q 028942 107 NDNLIGELPASICNLIHLKSLCLNNNNIGQIPAN 140 (201)
Q Consensus 107 ~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 140 (201)
+.|++...|..+..+.++..|+..+|.+.+++-.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 7777776666555566666777777776666654
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=1.2e-09 Score=81.30 Aligned_cols=160 Identities=23% Similarity=0.254 Sum_probs=106.7
Q ss_pred cccCCCccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCccCch--------------hhhCcCCCCEEEecCC
Q 028942 3 ISKLINIQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRITSLPD--------------ELGQLVRLERLSILGN 63 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~~~~~--------------~~~~l~~L~~L~l~~~ 63 (201)
+.++++|+.+++++|.|.. +...+..+..|+.|.+.+|.+..... ....-+.|+.+..++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4567788889999988762 23335667888888888888773211 1122356888888888
Q ss_pred cCccc-----chhhhcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCc-----CChhhhCCCccceEE
Q 028942 64 MLTCL-----PETIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGE-----LPASICNLIHLKSLC 128 (201)
Q Consensus 64 ~~~~~-----~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~ 128 (201)
++..- ...+...+.|+.+.+..|.|.. +...+..++.|+.|++..|.++. +...+..|+.|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 76542 2455666778888888887651 23456778888888888887762 334566777888888
Q ss_pred ccCCcCCccC-----hhhhhcCccCCeEecccCCCChhh
Q 028942 129 LNNNNIGQIP-----ANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 129 l~~~~l~~~~-----~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
++.|.+..-. ..+....++|+.+.+.+|.|+.++
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 8888774332 233445677888888888777543
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=5.4e-09 Score=59.70 Aligned_cols=57 Identities=28% Similarity=0.529 Sum_probs=33.7
Q ss_pred CccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCc
Q 028942 8 NIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNM 64 (201)
Q Consensus 8 ~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~ 64 (201)
+|++|++++|.+..+|. .|..+++|+.+++++|.+..++. .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666543 45566666666666666665532 34556666666666554
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=6.4e-10 Score=85.03 Aligned_cols=156 Identities=23% Similarity=0.185 Sum_probs=114.8
Q ss_pred cCCCccEEecCCCcCcccC--ccccCCCCCcEEeccCCCCccC---chhhhCcCCCCEEEecCCcCcccch--hhhcCCC
Q 028942 5 KLINIQRLVLDDNHIERLP--VNLGKLQSLKVMTLDGNRITSL---PDELGQLVRLERLSILGNMLTCLPE--TIGSLRN 77 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~~l~--~~~~~l~~L~~l~l~~~~l~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~ 77 (201)
++.+|+++.+.++.+...+ .....+++++.|+++.|-+... ..-...+++|+.|.++.|++..... .-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4677888888888776554 3567789999999999876632 3334678999999999998774321 1235678
Q ss_pred CCEEEeeCCCCC--cCcccccCCCCCceEEcCCCc-CCcCChhhhCCCccceEEccCCcCCccCh-hhhhcCccCCeEec
Q 028942 78 LVLLNVSNNKLK--SLPESIGSCYSLEELQANDNL-IGELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISL 153 (201)
Q Consensus 78 L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l 153 (201)
++.|.++.|.++ .+......+|++..|.+..|. +..-......+..|+.|+|++|++...+. .....++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 899999999888 455667788999999999984 33222223446678999999999865553 34577888999999
Q ss_pred ccCCCCh
Q 028942 154 HNNPISM 160 (201)
Q Consensus 154 ~~n~l~~ 160 (201)
+.+.+..
T Consensus 279 s~tgi~s 285 (505)
T KOG3207|consen 279 SSTGIAS 285 (505)
T ss_pred cccCcch
Confidence 9888764
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.81 E-value=2.9e-08 Score=82.09 Aligned_cols=104 Identities=31% Similarity=0.472 Sum_probs=60.7
Q ss_pred CCEEEecCCcCcc-cchhhhcCCCCCEEEeeCCCCC-cCcccccCCCCCceEEcCCCcCC-cCChhhhCCCccceEEccC
Q 028942 55 LERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNN 131 (201)
Q Consensus 55 L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~ 131 (201)
++.|++++|.+.. +|..+..+.+|+.|++++|.+. .+|..+..++.|+.|++++|.++ .+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4556666666553 4555666666666666666665 45555666666666666666665 4556666666666666666
Q ss_pred CcC-CccChhhhhcCccCCeEecccCCC
Q 028942 132 NNI-GQIPANLLKDCKALQNISLHNNPI 158 (201)
Q Consensus 132 ~~l-~~~~~~~~~~~~~L~~l~l~~n~l 158 (201)
|.+ ..+|..+.....++..+++.+|+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 666 345544322233445555555543
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.78 E-value=1.8e-10 Score=93.24 Aligned_cols=128 Identities=26% Similarity=0.289 Sum_probs=69.6
Q ss_pred CcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcC
Q 028942 32 LKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLI 111 (201)
Q Consensus 32 L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i 111 (201)
|...++++|.+..+..++.-++.++.|++++|+++.+. .+..++.|++||++.|.+..+|..-..-.+|..|++.+|.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence 33444445555544444555556666666666666553 45556666666666666665554322233366666666666
Q ss_pred CcCChhhhCCCccceEEccCCcCCccCh-hhhhcCccCCeEecccCCCChh
Q 028942 112 GELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 112 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
+.+-. +.++.+|+.||++.|-+..... .-+..+..|..|.+.+||+.|.
T Consensus 245 ~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 245 TTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred Hhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 55522 3455566666666666532221 1133445566666666666654
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=6.8e-10 Score=87.63 Aligned_cols=108 Identities=35% Similarity=0.517 Sum_probs=59.6
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+..+++++.+++.+|.+..+...+..+++|+.+++++|.|+.+ ..+..+..|+.|++.+|.+..+ .++..+..|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDI-SGLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhc-cCCccchhhhccc
Confidence 3445566666666666665554455566666666666666655 2234444566666666666555 2233355566666
Q ss_pred eeCCCCCcCccc-ccCCCCCceEEcCCCcCC
Q 028942 83 VSNNKLKSLPES-IGSCYSLEELQANDNLIG 112 (201)
Q Consensus 83 l~~~~~~~~~~~-~~~~~~L~~L~l~~n~i~ 112 (201)
+++|.+..+... ...+..++.+.+.+|.+.
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 666665554332 344555555555555544
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.74 E-value=5.4e-08 Score=80.53 Aligned_cols=104 Identities=28% Similarity=0.517 Sum_probs=76.6
Q ss_pred CCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCc-ccchhhhcCCCCCEEEeeCCCCC-cCcccccCCCCCceEEcC
Q 028942 31 SLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQAN 107 (201)
Q Consensus 31 ~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~ 107 (201)
.++.|+++++.+. .+|..+..+++|+.|++++|.+. .+|..+..+.+|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3667788888777 56777778888888888888877 46777778888888888888877 567777788888888888
Q ss_pred CCcCC-cCChhhhCC-CccceEEccCCcC
Q 028942 108 DNLIG-ELPASICNL-IHLKSLCLNNNNI 134 (201)
Q Consensus 108 ~n~i~-~~~~~~~~~-~~L~~L~l~~~~l 134 (201)
+|.++ .+|..+... ..+..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 88776 666665542 3456677776653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=1.8e-09 Score=85.20 Aligned_cols=130 Identities=32% Similarity=0.419 Sum_probs=103.9
Q ss_pred CCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeC
Q 028942 6 LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSN 85 (201)
Q Consensus 6 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 85 (201)
+..++.+.+..|.+..+-..+..+.++..+++..|.+..+...+..+++|+.|++++|.|+.+ .++..+..|+.|++.+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence 445556667777777655567778999999999999998865577899999999999999988 4566777799999999
Q ss_pred CCCCcCcccccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCcc
Q 028942 86 NKLKSLPESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQI 137 (201)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~ 137 (201)
|.+..+.. +..+..|+.+++++|.++.+... ...+..++.+++.+|.+..+
T Consensus 150 N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 150 NLISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred CcchhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 99988744 45588999999999999988653 46677888888888887544
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.69 E-value=7.6e-09 Score=77.16 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=105.7
Q ss_pred ccCCCccEEecCCCcCc-----ccCccccCCCCCcEEeccCCCCc----cCc-------hhhhCcCCCCEEEecCCcCcc
Q 028942 4 SKLINIQRLVLDDNHIE-----RLPVNLGKLQSLKVMTLDGNRIT----SLP-------DELGQLVRLERLSILGNMLTC 67 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~l~l~~~~l~----~~~-------~~~~~l~~L~~L~l~~~~~~~ 67 (201)
..+..++.++++||.|. .+...+...+.|+..+++.-... ++| .++..+++|+++++|+|-+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 45677888999999886 25556666778888877664322 333 345567788899998887652
Q ss_pred --c---chhhhcCCCCCEEEeeCCCCCcC--------------cccccCCCCCceEEcCCCcCCcCCh-----hhhCCCc
Q 028942 68 --L---PETIGSLRNLVLLNVSNNKLKSL--------------PESIGSCYSLEELQANDNLIGELPA-----SICNLIH 123 (201)
Q Consensus 68 --~---~~~~~~~~~L~~L~l~~~~~~~~--------------~~~~~~~~~L~~L~l~~n~i~~~~~-----~~~~~~~ 123 (201)
+ ..-+..+..|+.|.+++|.+... .......++|+.+...+|++.+-+. .+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 2 23446677888888888877622 1123455678888888887765442 3555677
Q ss_pred cceEEccCCcCCcc----ChhhhhcCccCCeEecccCCCChh
Q 028942 124 LKSLCLNNNNIGQI----PANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 124 L~~L~l~~~~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
+..+.++.|.|..- -...+..|++|+.|+++.|-++..
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence 88888877777332 224467788888888888877643
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.68 E-value=4.8e-10 Score=90.84 Aligned_cols=170 Identities=19% Similarity=0.212 Sum_probs=116.3
Q ss_pred ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCch-------hh---hCcCCCCEEEecCCcCcccchh
Q 028942 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD-------EL---GQLVRLERLSILGNMLTCLPET 71 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~-------~~---~~l~~L~~L~l~~~~~~~~~~~ 71 (201)
++..+++|+.|.++++.+.....-..--..|+.| +-.+.+..+.. .+ -.|..|.+.+.++|.+..+...
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH
Confidence 3566788999999998876432211111223332 22333332111 11 1255677888888888888788
Q ss_pred hhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeE
Q 028942 72 IGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 151 (201)
Q Consensus 72 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l 151 (201)
+.-++.++.|+|++|++..+. .+..+++|++|++++|.++.+|.....-..|..|.+++|.++++.. +.++.+|..|
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~g--ie~LksL~~L 259 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRG--IENLKSLYGL 259 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhh--HHhhhhhhcc
Confidence 888888999999999988775 6788999999999999999887643333348999999999988765 5788899999
Q ss_pred ecccCCCCh-hhhccccChhHHHHH
Q 028942 152 SLHNNPISM-DQFQQMEGFEEFEAR 175 (201)
Q Consensus 152 ~l~~n~l~~-~~~~~l~~~~~l~~~ 175 (201)
|+++|-|.. .....+..+..|+..
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHH
Confidence 999998763 223334444444443
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.56 E-value=6.9e-09 Score=67.75 Aligned_cols=109 Identities=20% Similarity=0.315 Sum_probs=76.9
Q ss_pred ccEEecCCCcCcccCccc---cCCCCCcEEeccCCCCccCchhhh-CcCCCCEEEecCCcCcccchhhhcCCCCCEEEee
Q 028942 9 IQRLVLDDNHIERLPVNL---GKLQSLKVMTLDGNRITSLPDELG-QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVS 84 (201)
Q Consensus 9 L~~L~l~~~~l~~l~~~~---~~l~~L~~l~l~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 84 (201)
+..++++.+.+..+++.. .....|...++++|.+..+|..+. ..+.++.+++.+|.++.+|..+..++.|+.+++.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 344566666666555443 334456666788888887777664 3456788888888888888778788888888888
Q ss_pred CCCCCcCcccccCCCCCceEEcCCCcCCcCChh
Q 028942 85 NNKLKSLPESIGSCYSLEELQANDNLIGELPAS 117 (201)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 117 (201)
.|.+...|..+..+.++..|+..+|.+..++-.
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 888777777666677777788777777766644
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.49 E-value=3.1e-07 Score=63.86 Aligned_cols=121 Identities=26% Similarity=0.329 Sum_probs=73.5
Q ss_pred cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhh-cCCCCCEEEeeCCCC
Q 028942 10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG-SLRNLVLLNVSNNKL 88 (201)
Q Consensus 10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 88 (201)
+++++++..+..+...-........++++.|.+..+ ..+..++.|.+|.+++|+|+.+.+.+. .++++.+|.+.+|.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 345556555554433222334566677777777755 234567777788888888877755553 345677777877777
Q ss_pred CcCc--ccccCCCCCceEEcCCCcCCcCCh----hhhCCCccceEEccC
Q 028942 89 KSLP--ESIGSCYSLEELQANDNLIGELPA----SICNLIHLKSLCLNN 131 (201)
Q Consensus 89 ~~~~--~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~l~~ 131 (201)
..+. ..+..+++|+.|.+-+|+++.-.. .+..+++++.||.++
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6542 234566777777777776664321 234556666666554
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.46 E-value=3.1e-07 Score=78.36 Aligned_cols=126 Identities=26% Similarity=0.385 Sum_probs=87.2
Q ss_pred CCccEEecCCCcCcccCccccCCCCCcEEeccCCC--CccCchh-hhCcCCCCEEEecCCc-CcccchhhhcCCCCCEEE
Q 028942 7 INIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNR--ITSLPDE-LGQLVRLERLSILGNM-LTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~--l~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~ 82 (201)
...+.+.+-++.+..++.... .+.|+.|-+..+. +..++.. |..++.|+.||+++|. +..+|..++.+.+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 344556666666665555443 3467777777775 4555444 5668888888888664 556788888888888888
Q ss_pred eeCCCCCcCcccccCCCCCceEEcCCCcC-CcCChhhhCCCccceEEccCCc
Q 028942 83 VSNNKLKSLPESIGSCYSLEELQANDNLI-GELPASICNLIHLKSLCLNNNN 133 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i-~~~~~~~~~~~~L~~L~l~~~~ 133 (201)
+.+..+..+|..+.++..|..|++..+.. ..++.....+.+|++|.+....
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 88888888888888888888888877643 3444555557788888876655
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=6.1e-07 Score=47.34 Aligned_cols=38 Identities=34% Similarity=0.621 Sum_probs=18.5
Q ss_pred CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC
Q 028942 8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL 45 (201)
Q Consensus 8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~ 45 (201)
+|++|++++|.++.+|+.+.++++|+.+++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555554455555555555555554433
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.34 E-value=6.7e-07 Score=62.27 Aligned_cols=126 Identities=19% Similarity=0.250 Sum_probs=87.7
Q ss_pred CcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccc-cCCCCCceEEcCCCc
Q 028942 32 LKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNL 110 (201)
Q Consensus 32 L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~n~ 110 (201)
=+.+++++.++..+...-........+|+++|.+..+ ..|..+..|.+|.+++|+|..+.+.+ ...+.+..|.+.+|.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 4456666666655433112244577888888887766 44667788899999999888775544 345678888888888
Q ss_pred CCcCCh--hhhCCCccceEEccCCcCCccCh---hhhhcCccCCeEecccCCC
Q 028942 111 IGELPA--SICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLHNNPI 158 (201)
Q Consensus 111 i~~~~~--~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~l~l~~n~l 158 (201)
+..+.. .+..++.|++|.+-+|++..... .++..+++|+.||++.-..
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 876532 35678888888888888866543 4667778888888875443
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.32 E-value=5.5e-07 Score=76.87 Aligned_cols=104 Identities=27% Similarity=0.453 Sum_probs=64.6
Q ss_pred CCCccEEecCCCc--CcccCcc-ccCCCCCcEEeccCC-CCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942 6 LINIQRLVLDDNH--IERLPVN-LGKLQSLKVMTLDGN-RITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL 81 (201)
Q Consensus 6 l~~L~~L~l~~~~--l~~l~~~-~~~l~~L~~l~l~~~-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 81 (201)
+++|+.|-+.+|. +..++.. |..++.|+.|++++| .+..+|..++.+-+|++|+++++.+..+|.++..+..|.+|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 3456666666664 4444433 556777777777754 45567777777777777777777777777777777777777
Q ss_pred EeeCCCCC-cCcccccCCCCCceEEcCCC
Q 028942 82 NVSNNKLK-SLPESIGSCYSLEELQANDN 109 (201)
Q Consensus 82 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~n 109 (201)
++..+... .++.....+.+|+.|.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 77665432 22333444666666665444
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.32 E-value=1.3e-06 Score=46.14 Aligned_cols=37 Identities=41% Similarity=0.598 Sum_probs=17.1
Q ss_pred CCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcC
Q 028942 55 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL 91 (201)
Q Consensus 55 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 91 (201)
|++|++++|+++.+|+.+..+++|++|++++|.++.+
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 4444555555544444444455555555555544433
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.1e-07 Score=70.03 Aligned_cols=59 Identities=29% Similarity=0.356 Sum_probs=25.7
Q ss_pred CCCcEEeccCCCCc---cCchhhhCcCCCCEEEecCCcCcccchhh-hcCCCCCEEEeeCCCC
Q 028942 30 QSLKVMTLDGNRIT---SLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKL 88 (201)
Q Consensus 30 ~~L~~l~l~~~~l~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 88 (201)
..++.+++.+|.++ ++..-+..+|+++.|+++.|++...-..+ ....+|+++.+++..+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 34455555555544 22223344555555555555444311111 2334455555544433
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.22 E-value=7e-07 Score=74.38 Aligned_cols=145 Identities=22% Similarity=0.271 Sum_probs=95.7
Q ss_pred CCccEEecCCCcCc--ccCcc-ccCCCCCcEEeccCCCCc--cCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942 7 INIQRLVLDDNHIE--RLPVN-LGKLQSLKVMTLDGNRIT--SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL 81 (201)
Q Consensus 7 ~~L~~L~l~~~~l~--~l~~~-~~~l~~L~~l~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 81 (201)
.+|+.|+++|...- .=+.. -..+|.|+.|.+.+-.+. .+.....++++|..||+++++++.+ .+.+.+.+|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46777888775322 11111 234688888888887665 3334456788899999999988887 778888888888
Q ss_pred EeeCCCCCcCc--ccccCCCCCceEEcCCCcCCcCC-------hhhhCCCccceEEccCCcC-CccChhhhhcCccCCeE
Q 028942 82 NVSNNKLKSLP--ESIGSCYSLEELQANDNLIGELP-------ASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNI 151 (201)
Q Consensus 82 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~-------~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~L~~l 151 (201)
.+.+=.+.... ..++.+++|+.||++......-+ .....++.|+.||.+++.+ ..+-.......++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 88766665432 34678889999999887544332 1233477888999888877 33333444445555544
Q ss_pred e
Q 028942 152 S 152 (201)
Q Consensus 152 ~ 152 (201)
.
T Consensus 281 ~ 281 (699)
T KOG3665|consen 281 A 281 (699)
T ss_pred h
Confidence 4
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=6.6e-07 Score=66.00 Aligned_cols=172 Identities=19% Similarity=0.223 Sum_probs=102.8
Q ss_pred CCCccEEecCCCcCc---ccCccccCCCCCcEEeccCCCCccCchhh-hCcCCCCEEEecCCcCcc--cchhhhcCCCCC
Q 028942 6 LINIQRLVLDDNHIE---RLPVNLGKLQSLKVMTLDGNRITSLPDEL-GQLVRLERLSILGNMLTC--LPETIGSLRNLV 79 (201)
Q Consensus 6 l~~L~~L~l~~~~l~---~l~~~~~~l~~L~~l~l~~~~l~~~~~~~-~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~ 79 (201)
++.++++++.+|.+. .+...+.++|.|+.|++++|++..--..+ .....+++|-+.+..+.. ....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 455677778887776 35555677888888888888776211111 234567777777766542 334456667777
Q ss_pred EEEeeCCCCCcC--c-ccccCC-CCCceEEcCCCcCC---cCChhhhCCCccceEEccCCcCCccCh-hhhhcCccCCeE
Q 028942 80 LLNVSNNKLKSL--P-ESIGSC-YSLEELQANDNLIG---ELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNI 151 (201)
Q Consensus 80 ~L~l~~~~~~~~--~-~~~~~~-~~L~~L~l~~n~i~---~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l 151 (201)
.+.++.|.+..+ . .+...+ +.++.+++..|... .+..-...++++..+.+..|++.+... .-+...+.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 777777755532 1 122222 35666666666543 222223346677778888887744332 224456667778
Q ss_pred ecccCCCC-hhhhccccChhHHHHHHh
Q 028942 152 SLHNNPIS-MDQFQQMEGFEEFEARRR 177 (201)
Q Consensus 152 ~l~~n~l~-~~~~~~l~~~~~l~~~~~ 177 (201)
++..|.|. .+.+..+.+++++.-.+.
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv 256 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRV 256 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeec
Confidence 88888775 555566666666655443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1e-05 Score=63.07 Aligned_cols=73 Identities=29% Similarity=0.454 Sum_probs=48.3
Q ss_pred ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCC-CCccCchhhhCcCCCCEEEecCC-cCcccchhhhcCCCCCEE
Q 028942 4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGN-RITSLPDELGQLVRLERLSILGN-MLTCLPETIGSLRNLVLL 81 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~-~l~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~L~~L 81 (201)
..|.+++.|++++|.+..+|. + -.+|+.|.+.++ .++.+|..+ ...|+.|.+++| .+..+|. +|+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 346788899999888888872 2 236888888763 455666443 246888888887 5555544 35566
Q ss_pred EeeCCC
Q 028942 82 NVSNNK 87 (201)
Q Consensus 82 ~l~~~~ 87 (201)
.+..+.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 665554
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.5e-07 Score=69.33 Aligned_cols=148 Identities=21% Similarity=0.181 Sum_probs=68.1
Q ss_pred ccEEecCCCcCc--ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCc-Cccc--chhhhcCCCCCEEE
Q 028942 9 IQRLVLDDNHIE--RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNM-LTCL--PETIGSLRNLVLLN 82 (201)
Q Consensus 9 L~~L~l~~~~l~--~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~-~~~~--~~~~~~~~~L~~L~ 82 (201)
|+.++++...++ .+...+..+.+|+.+.+.++++. .+...+.....|..++++++. ++.. .--+..+..|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 344555554444 23334445555555555555554 233334444555555555543 2211 12234444555555
Q ss_pred eeCCCCC------------------------------cCcccccCCCCCceEEcCCCc-CCc-CChhhhCCCccceEEcc
Q 028942 83 VSNNKLK------------------------------SLPESIGSCYSLEELQANDNL-IGE-LPASICNLIHLKSLCLN 130 (201)
Q Consensus 83 l~~~~~~------------------------------~~~~~~~~~~~L~~L~l~~n~-i~~-~~~~~~~~~~L~~L~l~ 130 (201)
++||... .+......++++..|+++.|. ++. .-..+..++.|+++.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 5555322 111223455666666666552 221 11234556666666666
Q ss_pred CCcC-CccChhhhhcCccCCeEecccC
Q 028942 131 NNNI-GQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 131 ~~~l-~~~~~~~~~~~~~L~~l~l~~n 156 (201)
.|-. ..-.---+...++|.+|++.+.
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEeccc
Confidence 6532 1110011455566666666543
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=8e-06 Score=59.71 Aligned_cols=156 Identities=20% Similarity=0.249 Sum_probs=101.4
Q ss_pred cCCCccEEecCCCcCc-----ccCccccCCCCCcEEeccCCCCc----c-------CchhhhCcCCCCEEEecCCcCcc-
Q 028942 5 KLINIQRLVLDDNHIE-----RLPVNLGKLQSLKVMTLDGNRIT----S-------LPDELGQLVRLERLSILGNMLTC- 67 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~l~l~~~~l~----~-------~~~~~~~l~~L~~L~l~~~~~~~- 67 (201)
-+..+.+++++||.|. .+...++.-.+|+..+++..... . +..++..||+++..++++|.+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4677889999999886 24445566677888877764333 2 23456678999999999987663
Q ss_pred cc----hhhhcCCCCCEEEeeCCCCCcCcc--------------cccCCCCCceEEcCCCcCCcCChh-----hhCCCcc
Q 028942 68 LP----ETIGSLRNLVLLNVSNNKLKSLPE--------------SIGSCYSLEELQANDNLIGELPAS-----ICNLIHL 124 (201)
Q Consensus 68 ~~----~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~L~~L~l~~n~i~~~~~~-----~~~~~~L 124 (201)
.| .-++....+.+|.+++|.+..+.. ....-|.|+.+....|++...+.. +..-..+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 23 334666789999999997764321 123457788888888877655432 2222467
Q ss_pred ceEEccCCcCCccCh-----hhhhcCccCCeEecccCCCCh
Q 028942 125 KSLCLNNNNIGQIPA-----NLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 125 ~~L~l~~~~l~~~~~-----~~~~~~~~L~~l~l~~n~l~~ 160 (201)
+.+.+..|.|+.-.- .-+..+.+|+.|+++.|-++-
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 777777777743311 113445677777777777663
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=8e-06 Score=59.72 Aligned_cols=160 Identities=20% Similarity=0.190 Sum_probs=111.6
Q ss_pred cccCCCccEEecCCCcCc-ccC----ccccCCCCCcEEeccCCCCccCch-----h---------hhCcCCCCEEEecCC
Q 028942 3 ISKLINIQRLVLDDNHIE-RLP----VNLGKLQSLKVMTLDGNRITSLPD-----E---------LGQLVRLERLSILGN 63 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~-~l~----~~~~~l~~L~~l~l~~~~l~~~~~-----~---------~~~l~~L~~L~l~~~ 63 (201)
+.+|+.|+.+++++|.|. ..| +.++....|..|.+++|.+..+.. + ...-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 568899999999999877 233 335667889999999998874421 1 223467888888888
Q ss_pred cCcccc-----hhhhcCCCCCEEEeeCCCCCc-----C-cccccCCCCCceEEcCCCcCCcC-----ChhhhCCCccceE
Q 028942 64 MLTCLP-----ETIGSLRNLVLLNVSNNKLKS-----L-PESIGSCYSLEELQANDNLIGEL-----PASICNLIHLKSL 127 (201)
Q Consensus 64 ~~~~~~-----~~~~~~~~L~~L~l~~~~~~~-----~-~~~~~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~L~~L 127 (201)
++..-| ..+....+|+++.+..|.|.. + -..++.+.+|+.|++..|.++.. ...++.|+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 876433 234445689999999998761 1 12457788999999999988843 3456778889999
Q ss_pred EccCCcCCccCh-hhhh-----cCccCCeEecccCCCChhh
Q 028942 128 CLNNNNIGQIPA-NLLK-----DCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 128 ~l~~~~l~~~~~-~~~~-----~~~~L~~l~l~~n~l~~~~ 162 (201)
.+..|.+..-.. .++. -.++|..|..++|.+....
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence 999998843322 2222 2467788888888765443
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6.7e-07 Score=65.97 Aligned_cols=146 Identities=18% Similarity=0.097 Sum_probs=82.9
Q ss_pred ccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCC-CccCc--hhhhCcCCCCEEEecCCcCc-------------
Q 028942 4 SKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNR-ITSLP--DELGQLVRLERLSILGNMLT------------- 66 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~-l~~~~--~~~~~l~~L~~L~l~~~~~~------------- 66 (201)
..|.+|+.|.++|+.+. .+...++.-..|+.++++.+. +++.. --+..|..|+.|+++.|...
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 34566777777776655 244444445556666655542 33221 12344555555555554322
Q ss_pred -----------------ccchhhhcCCCCCEEEeeCCC-CC-cCcccccCCCCCceEEcCCCcCC--cCChhhhCCCccc
Q 028942 67 -----------------CLPETIGSLRNLVLLNVSNNK-LK-SLPESIGSCYSLEELQANDNLIG--ELPASICNLIHLK 125 (201)
Q Consensus 67 -----------------~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~ 125 (201)
.+..-...++++..||++.|. +. .+...+..++-|+++.+++|.-- ..--.+...+.|.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceE
Confidence 122223567899999999884 22 23344677889999999998532 1112466788999
Q ss_pred eEEccCCcCCccChhhhhcCccCC
Q 028942 126 SLCLNNNNIGQIPANLLKDCKALQ 149 (201)
Q Consensus 126 ~L~l~~~~l~~~~~~~~~~~~~L~ 149 (201)
+|++.++--..-..-....+++|+
T Consensus 367 yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 367 YLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred EEEeccccCchHHHHHHHhCcccc
Confidence 999877654322222234455544
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=5.5e-05 Score=63.37 Aligned_cols=136 Identities=18% Similarity=0.253 Sum_probs=93.7
Q ss_pred CCCcEEeccCCCCc-cC-chhh-hCcCCCCEEEecCCcCcc--cchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceE
Q 028942 30 QSLKVMTLDGNRIT-SL-PDEL-GQLVRLERLSILGNMLTC--LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEEL 104 (201)
Q Consensus 30 ~~L~~l~l~~~~l~-~~-~~~~-~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 104 (201)
.+|+.|++++...- .- |..+ ..+|+|+.|.+++-.+.. +......+++|..||+++++++.+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46778888775432 11 2223 347889998888765442 234456778899999999988877 667888888888
Q ss_pred EcCCCcCCcCC--hhhhCCCccceEEccCCcCCccCh------hhhhcCccCCeEecccCCCChhhhccc
Q 028942 105 QANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPA------NLLKDCKALQNISLHNNPISMDQFQQM 166 (201)
Q Consensus 105 ~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~------~~~~~~~~L~~l~l~~n~l~~~~~~~l 166 (201)
.+.+=.+.... ..+..+++|+.||++.......+. +....+|.|+.||.+++.+..+.++.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 88776665432 346678999999998876533331 123457899999999999886655543
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00042 Score=54.28 Aligned_cols=117 Identities=28% Similarity=0.388 Sum_probs=75.5
Q ss_pred ccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCc-CcccchhhhcCCCCCEEEeeCC-CCCcCcccccCCCCCce
Q 028942 26 LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNM-LTCLPETIGSLRNLVLLNVSNN-KLKSLPESIGSCYSLEE 103 (201)
Q Consensus 26 ~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~ 103 (201)
+..+.++..|++++|.++.+|. --.+|++|.+++|. ++.+|..+ ..+|+.|.+++| .+..+|. .|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 3446889999999999998872 23369999998754 55566544 257999999988 5655554 3555
Q ss_pred EEcCCCc---CCcCChhhhCC------------------CccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942 104 LQANDNL---IGELPASICNL------------------IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 104 L~l~~n~---i~~~~~~~~~~------------------~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n 156 (201)
|.+..+. +..+|..+..+ ++|++|++.+|.....|..+ ..+|+.|.+..+
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~L---P~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKL---PESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccc---cccCcEEEeccc
Confidence 5555543 33444332221 36888888887765554321 246777777654
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=7.3e-06 Score=60.08 Aligned_cols=81 Identities=23% Similarity=0.245 Sum_probs=47.3
Q ss_pred CCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcc--cccCCCCCceEEc
Q 028942 29 LQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE--SIGSCYSLEELQA 106 (201)
Q Consensus 29 l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l 106 (201)
+.+.+.|+..++.+..+ .-+..|+.|..|.++.|.|+++ ..+..|.+|+.|.|..|.|..+.. .+.++++|+.|++
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34555566666666654 2334566666666666666665 234556666666666666665432 3455666666666
Q ss_pred CCCcC
Q 028942 107 NDNLI 111 (201)
Q Consensus 107 ~~n~i 111 (201)
..|+-
T Consensus 96 ~ENPC 100 (388)
T KOG2123|consen 96 DENPC 100 (388)
T ss_pred ccCCc
Confidence 66543
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.44 E-value=0.00078 Score=44.15 Aligned_cols=117 Identities=24% Similarity=0.448 Sum_probs=40.8
Q ss_pred ccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCc
Q 028942 26 LGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLE 102 (201)
Q Consensus 26 ~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 102 (201)
|..+.+|+.+.+.. .+..++ ..+..+..++.+.+..+ +..++. .+..+.+++.+.+.. .+..++. .+..+++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44455555555543 344332 23444555666665553 444432 234444566665543 3333322 334455666
Q ss_pred eEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccC
Q 028942 103 ELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKAL 148 (201)
Q Consensus 103 ~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 148 (201)
.+.+..+ ++.++. .+..+ .++.+.+.. .+..++...|.+|++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6665443 333322 23333 555555543 4444555555555544
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.30 E-value=0.0017 Score=42.57 Aligned_cols=117 Identities=19% Similarity=0.359 Sum_probs=64.5
Q ss_pred ccccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch-hhhcCCCC
Q 028942 2 EISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE-TIGSLRNL 78 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L 78 (201)
.|.++.+|+.+.+.. .+..+ ...|..+.+++.+.+..+ +..++. .+..+..++.+.+.. .+..++. .+..+.++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 467888999999985 56666 445888889999999875 666643 466777899999976 5555544 45568899
Q ss_pred CEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCC-hhhhCCCcc
Q 028942 79 VLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHL 124 (201)
Q Consensus 79 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L 124 (201)
+.+.+..+ +..++. .+..+ .++.+.+.. .++.++ ..+..+++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 99999765 666654 44554 889988876 445554 345555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00015 Score=52.58 Aligned_cols=84 Identities=23% Similarity=0.332 Sum_probs=38.2
Q ss_pred CCCCcEEeccCCCCccCchhhhCcCCCCEEEecCC--cCc-ccchhhhcCCCCCEEEeeCCCCCcCc--ccccCCCCCce
Q 028942 29 LQSLKVMTLDGNRITSLPDELGQLVRLERLSILGN--MLT-CLPETIGSLRNLVLLNVSNNKLKSLP--ESIGSCYSLEE 103 (201)
Q Consensus 29 l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~--~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~ 103 (201)
+..++.+.+.+..++.+ ..+-.+++|++|.++.| ++. .++.....+++|+++++++|.+..+. ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 33444444444444432 11223555666666666 222 12222333456666666666554321 12334444555
Q ss_pred EEcCCCcCCc
Q 028942 104 LQANDNLIGE 113 (201)
Q Consensus 104 L~l~~n~i~~ 113 (201)
|++..|..+.
T Consensus 121 Ldl~n~~~~~ 130 (260)
T KOG2739|consen 121 LDLFNCSVTN 130 (260)
T ss_pred hhcccCCccc
Confidence 5555554443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=6.2e-05 Score=55.37 Aligned_cols=100 Identities=27% Similarity=0.378 Sum_probs=75.1
Q ss_pred CcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCCh--hhhCCCccceEE
Q 028942 51 QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA--SICNLIHLKSLC 128 (201)
Q Consensus 51 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~~~~~L~~L~ 128 (201)
.+...+.|+..+|.+..| .....++.|++|.|+-|.|+.+.+ +..|+.|+.|.+..|.|.++.. -+.++++|+.|+
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 355678888888888877 445678889999999999888743 6788889999998888887754 366788888888
Q ss_pred ccCCcC-CccC----hhhhhcCccCCeEe
Q 028942 129 LNNNNI-GQIP----ANLLKDCKALQNIS 152 (201)
Q Consensus 129 l~~~~l-~~~~----~~~~~~~~~L~~l~ 152 (201)
|..|+= ..-+ ..+++-+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 887765 2222 24677778887766
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00062 Score=49.51 Aligned_cols=97 Identities=27% Similarity=0.284 Sum_probs=49.7
Q ss_pred CCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCC---cCcccccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEc
Q 028942 55 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK---SLPESIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCL 129 (201)
Q Consensus 55 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l 129 (201)
++.+.+.+..++++ .++-.+++|++|.++.|... .++.....+++|+.+++++|.+..+. ..+..+.+|.+|++
T Consensus 45 le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 45 LELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred hhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 34444444444443 33444556666677666332 23333344566777777776665432 22344555666666
Q ss_pred cCCcCCccCh---hhhhcCccCCeEe
Q 028942 130 NNNNIGQIPA---NLLKDCKALQNIS 152 (201)
Q Consensus 130 ~~~~l~~~~~---~~~~~~~~L~~l~ 152 (201)
.+|....... .++.-+++|++++
T Consensus 124 ~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 124 FNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred ccCCccccccHHHHHHHHhhhhcccc
Confidence 6666543332 3455555555544
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.57 E-value=0.0011 Score=29.20 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=12.5
Q ss_pred CccEEecCCCcCcccCcccc
Q 028942 8 NIQRLVLDDNHIERLPVNLG 27 (201)
Q Consensus 8 ~L~~L~l~~~~l~~l~~~~~ 27 (201)
+|++|++++|.++.+|+.|.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666777776666665554
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.17 E-value=0.0031 Score=27.69 Aligned_cols=17 Identities=47% Similarity=0.743 Sum_probs=8.3
Q ss_pred CCEEEecCCcCcccchh
Q 028942 55 LERLSILGNMLTCLPET 71 (201)
Q Consensus 55 L~~L~l~~~~~~~~~~~ 71 (201)
|++|++++|.++.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44555555555544443
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.46 E-value=0.00013 Score=58.54 Aligned_cols=87 Identities=33% Similarity=0.462 Sum_probs=40.7
Q ss_pred CCCCCEEEeeCCCCCc-----CcccccCCCC-CceEEcCCCcCCcC-----ChhhhCC-CccceEEccCCcCCccC----
Q 028942 75 LRNLVLLNVSNNKLKS-----LPESIGSCYS-LEELQANDNLIGEL-----PASICNL-IHLKSLCLNNNNIGQIP---- 138 (201)
Q Consensus 75 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~-L~~L~l~~n~i~~~-----~~~~~~~-~~L~~L~l~~~~l~~~~---- 138 (201)
..++++|.+.+|.++. +...+...+. +..+++.+|.+.+. ...+... ..++.+++..|.+++..
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4455555555555441 1112223333 44455555554422 1222233 34566666666663322
Q ss_pred hhhhhcCccCCeEecccCCCChh
Q 028942 139 ANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 139 ~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
......++.++++.+++|++...
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccH
Confidence 13344555666666666666543
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.42 E-value=0.014 Score=23.77 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=4.6
Q ss_pred CCEEEecCCcCcc
Q 028942 55 LERLSILGNMLTC 67 (201)
Q Consensus 55 L~~L~l~~~~~~~ 67 (201)
|+.|++++|+++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.51 E-value=0.042 Score=24.96 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=13.5
Q ss_pred CccceEEccCCcCCccChhhh
Q 028942 122 IHLKSLCLNNNNIGQIPANLL 142 (201)
Q Consensus 122 ~~L~~L~l~~~~l~~~~~~~~ 142 (201)
+.|++|++++|.+..+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456667777777766666544
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.51 E-value=0.042 Score=24.96 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=13.5
Q ss_pred CccceEEccCCcCCccChhhh
Q 028942 122 IHLKSLCLNNNNIGQIPANLL 142 (201)
Q Consensus 122 ~~L~~L~l~~~~l~~~~~~~~ 142 (201)
+.|++|++++|.+..+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456667777777766666544
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.14 E-value=0.016 Score=46.59 Aligned_cols=104 Identities=28% Similarity=0.255 Sum_probs=48.5
Q ss_pred CCCccEEecCCC-cCcc--cCccccCCCCCcEEeccCC--CCccCc----hhhhCcCCCCEEEecCCc-Cccc--chhhh
Q 028942 6 LINIQRLVLDDN-HIER--LPVNLGKLQSLKVMTLDGN--RITSLP----DELGQLVRLERLSILGNM-LTCL--PETIG 73 (201)
Q Consensus 6 l~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~l~l~~~--~l~~~~----~~~~~l~~L~~L~l~~~~-~~~~--~~~~~ 73 (201)
++.|+.+.+.++ .+.. +......++.|+.++++++ .....+ .....+..++.++++.+. ++.. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 445555555554 2332 3333445566666666552 111111 122334556666666655 3322 11112
Q ss_pred cCCCCCEEEeeCCC-CC--cCcccccCCCCCceEEcCCC
Q 028942 74 SLRNLVLLNVSNNK-LK--SLPESIGSCYSLEELQANDN 109 (201)
Q Consensus 74 ~~~~L~~L~l~~~~-~~--~~~~~~~~~~~L~~L~l~~n 109 (201)
.+++|++|.+.++. ++ .+......++.|+.|+++.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 25566666655554 33 12223344555666666655
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.16 E-value=0.029 Score=24.96 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=13.1
Q ss_pred CccCCeEecccCCCChhhhcc
Q 028942 145 CKALQNISLHNNPISMDQFQQ 165 (201)
Q Consensus 145 ~~~L~~l~l~~n~l~~~~~~~ 165 (201)
+++|+.|++++|.|+.+++..
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 457788888888887776543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.07 E-value=0.00092 Score=53.84 Aligned_cols=160 Identities=23% Similarity=0.293 Sum_probs=102.5
Q ss_pred ccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCccC-----chhhhCc-CCCCEEEecCCcCcc-----cchhh
Q 028942 9 IQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRITSL-----PDELGQL-VRLERLSILGNMLTC-----LPETI 72 (201)
Q Consensus 9 L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~~~-----~~~~~~l-~~L~~L~l~~~~~~~-----~~~~~ 72 (201)
+..+.+.+|.+.. +...+...+.|..+++++|.+... ...+... ..+++|++..|.++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5556677776652 344566778888899988887721 1122222 346677777777763 34556
Q ss_pred hcCCCCCEEEeeCCCCCc-----Ccccc----cCCCCCceEEcCCCcCCcC-----ChhhhCCCc-cceEEccCCcCCcc
Q 028942 73 GSLRNLVLLNVSNNKLKS-----LPESI----GSCYSLEELQANDNLIGEL-----PASICNLIH-LKSLCLNNNNIGQI 137 (201)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~-----~~~~~----~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~-L~~L~l~~~~l~~~ 137 (201)
.....++.+++..|.+.. ++..+ ....+++.|.+.+|.++.. ...+...+. +..+++..|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667788888888887641 22233 3467889999999887732 223444444 66688888888544
Q ss_pred Ch----hhhhcC-ccCCeEecccCCCChhhhccccC
Q 028942 138 PA----NLLKDC-KALQNISLHNNPISMDQFQQMEG 168 (201)
Q Consensus 138 ~~----~~~~~~-~~L~~l~l~~n~l~~~~~~~l~~ 168 (201)
.. ..+..+ ..++.+++..|.|...+...+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 21 224444 56789999999998766655544
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.83 E-value=0.068 Score=43.04 Aligned_cols=126 Identities=24% Similarity=0.265 Sum_probs=63.7
Q ss_pred CCCCcEEeccCC-CCcc--CchhhhCcCCCCEEEecCC-c-Cccc----chhhhcCCCCCEEEeeCCC-CCcC--ccccc
Q 028942 29 LQSLKVMTLDGN-RITS--LPDELGQLVRLERLSILGN-M-LTCL----PETIGSLRNLVLLNVSNNK-LKSL--PESIG 96 (201)
Q Consensus 29 l~~L~~l~l~~~-~l~~--~~~~~~~l~~L~~L~l~~~-~-~~~~----~~~~~~~~~L~~L~l~~~~-~~~~--~~~~~ 96 (201)
++.++.+.+..+ .+.. +-.....++.|+.|+++++ . +... ......+.+++.++++++. ++.. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455666655544 2222 2233445667777777663 1 1111 1222345667777777665 4422 12223
Q ss_pred CCCCCceEEcCCCc-CCc--CChhhhCCCccceEEccCCcCCcc--ChhhhhcCccCCeEecc
Q 028942 97 SCYSLEELQANDNL-IGE--LPASICNLIHLKSLCLNNNNIGQI--PANLLKDCKALQNISLH 154 (201)
Q Consensus 97 ~~~~L~~L~l~~n~-i~~--~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~l~l~ 154 (201)
.++.|+.|.+.++. +++ +......++.|+.|++++|..... -..+..+|+.++.+.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 36677777766665 442 333445566677777776655211 11224446655554443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.78 E-value=0.0035 Score=45.26 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=46.1
Q ss_pred CcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEcc
Q 028942 51 QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLN 130 (201)
Q Consensus 51 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~ 130 (201)
.....+.||++.|++..+...++.+..+..++++.|.+..+|..+.....++.+++-.|..+..|...+..+.++++++-
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 34445555555555554444455555555556665555555555555555555555555555555555555555655555
Q ss_pred CCcC
Q 028942 131 NNNI 134 (201)
Q Consensus 131 ~~~l 134 (201)
++.+
T Consensus 120 ~~~~ 123 (326)
T KOG0473|consen 120 KTEF 123 (326)
T ss_pred cCcc
Confidence 5554
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.23 E-value=0.29 Score=22.70 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=15.9
Q ss_pred ccCCeEecccCCCChhhhccc
Q 028942 146 KALQNISLHNNPISMDQFQQM 166 (201)
Q Consensus 146 ~~L~~l~l~~n~l~~~~~~~l 166 (201)
++|++|++++|.+..++...+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 468889999999887765443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.36 E-value=0.015 Score=42.19 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=69.4
Q ss_pred ccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEE
Q 028942 26 LGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ 105 (201)
Q Consensus 26 ~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 105 (201)
+......+.++++.|.+..+...+.-+..+..++++.|.+..+|..+.....+..+++-.|..+..|..+...+.++.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 44456777888888877766555666677778889989888888888888888888888888888888888889999888
Q ss_pred cCCCcCC
Q 028942 106 ANDNLIG 112 (201)
Q Consensus 106 l~~n~i~ 112 (201)
+..+.++
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8887654
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=87.02 E-value=0.48 Score=45.83 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=34.3
Q ss_pred EccCCcCCccChhhhhcCccCCeEecccCCCChhhhccccChhHH
Q 028942 128 CLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEF 172 (201)
Q Consensus 128 ~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l~~~~~l 172 (201)
+|++|.|..++...|..+++|+.|+|.+|++.|++ .+..+..+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC--~L~WL~~W 43 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDC--GLARLPRW 43 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccc--ccHHHHHH
Confidence 47789999999888999999999999999999885 34444444
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.32 E-value=0.4 Score=34.12 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=43.0
Q ss_pred CCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcC-CccCh-hhhhcCccCCeEecccC-CCChhhhccccChhHHHHH
Q 028942 100 SLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNI-GQIPA-NLLKDCKALQNISLHNN-PISMDQFQQMEGFEEFEAR 175 (201)
Q Consensus 100 ~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l-~~~~~-~~~~~~~~L~~l~l~~n-~l~~~~~~~l~~~~~l~~~ 175 (201)
.++.++-+++.|.... ..+..++.++.|.+.+|.- ....- .+-...++|+.|++++| .|+..+...+..++.|+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4455555555444322 2345566666666665543 22211 11223467777777776 4777666666666666655
Q ss_pred Hhhcc
Q 028942 176 RRKKF 180 (201)
Q Consensus 176 ~~~~~ 180 (201)
....+
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 54433
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.43 E-value=0.97 Score=20.61 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=8.3
Q ss_pred CCccEEecCCCcCcc
Q 028942 7 INIQRLVLDDNHIER 21 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~ 21 (201)
++|+.|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455556666655544
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.31 E-value=0.84 Score=36.16 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=49.6
Q ss_pred CcCCCCEEEecCCcC-ccc-chhh-hcCCCCCEEEeeCCC-CCcCc--ccccCCCCCceEEcCCCcCC---cCChhhhCC
Q 028942 51 QLVRLERLSILGNML-TCL-PETI-GSLRNLVLLNVSNNK-LKSLP--ESIGSCYSLEELQANDNLIG---ELPASICNL 121 (201)
Q Consensus 51 ~l~~L~~L~l~~~~~-~~~-~~~~-~~~~~L~~L~l~~~~-~~~~~--~~~~~~~~L~~L~l~~n~i~---~~~~~~~~~ 121 (201)
.+..++.++.+++.- ... -..+ .+..+|+++.+..++ ++... ..-++++.|+.+++..+... .+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 455566666665542 211 1122 344566666666663 22211 11244566666666555322 122223345
Q ss_pred CccceEEccCCcCCccC-----hhhhhcCccCCeEecccCCC
Q 028942 122 IHLKSLCLNNNNIGQIP-----ANLLKDCKALQNISLHNNPI 158 (201)
Q Consensus 122 ~~L~~L~l~~~~l~~~~-----~~~~~~~~~L~~l~l~~n~l 158 (201)
+.++.+.+++|...... .....++..|..+.+++.+.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 56666666655441111 11123344555555555553
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.70 E-value=1.2 Score=20.29 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=7.1
Q ss_pred CceEEcCCCcCCcCC
Q 028942 101 LEELQANDNLIGELP 115 (201)
Q Consensus 101 L~~L~l~~n~i~~~~ 115 (201)
|+.|+.++|.++.+|
T Consensus 4 L~~L~vs~N~Lt~LP 18 (26)
T smart00364 4 LKELNVSNNQLTSLP 18 (26)
T ss_pred cceeecCCCccccCc
Confidence 444444444444444
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.42 E-value=1.1 Score=20.22 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=13.2
Q ss_pred CccCCeEecccC-CCChhhhcc
Q 028942 145 CKALQNISLHNN-PISMDQFQQ 165 (201)
Q Consensus 145 ~~~L~~l~l~~n-~l~~~~~~~ 165 (201)
|+.|++|++.++ .+++.++..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHH
Confidence 456777777776 366665543
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.49 E-value=0.96 Score=37.04 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=38.3
Q ss_pred CCCCCceEEcCCCcCCcCC---hhhhCCCccceEEccCC--cCCccCh-hhhhcCccCCeEecccCCCC
Q 028942 97 SCYSLEELQANDNLIGELP---ASICNLIHLKSLCLNNN--NIGQIPA-NLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 97 ~~~~L~~L~l~~n~i~~~~---~~~~~~~~L~~L~l~~~--~l~~~~~-~~~~~~~~L~~l~l~~n~l~ 159 (201)
+.+.+..+++++|++..+. ......+.+..|+|++| .+..... .-+. ..-|++|.+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccc
Confidence 3456677788888776543 23345678888888888 4422221 1122 334788888888875
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.47 E-value=0.59 Score=33.28 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=17.0
Q ss_pred CCccceEEccCCc-CCccChhhhhcCccCCeEecc
Q 028942 121 LIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLH 154 (201)
Q Consensus 121 ~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~l~l~ 154 (201)
.++|+.|++++|. |++-....+..+++|+.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 4456666666553 344443444455555555443
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.67 E-value=3.6 Score=33.88 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=15.0
Q ss_pred CCCCEEEecCCcCcccc---hhhhcCCCCCEEEeeCC
Q 028942 53 VRLERLSILGNMLTCLP---ETIGSLRNLVLLNVSNN 86 (201)
Q Consensus 53 ~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~ 86 (201)
+.+..+.+++|++..+. ..-...+++.+|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44445555555544331 11123344555555555
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=65.96 E-value=3.7 Score=32.74 Aligned_cols=128 Identities=22% Similarity=0.210 Sum_probs=68.3
Q ss_pred CCCCcEEeccCCC-Ccc--CchhhhCcCCCCEEEecCCc-Cccc--chhhhcCCCCCEEEeeCCCCC---cCcccccCCC
Q 028942 29 LQSLKVMTLDGNR-ITS--LPDELGQLVRLERLSILGNM-LTCL--PETIGSLRNLVLLNVSNNKLK---SLPESIGSCY 99 (201)
Q Consensus 29 l~~L~~l~l~~~~-l~~--~~~~~~~l~~L~~L~l~~~~-~~~~--~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~ 99 (201)
+..|+.+..+++. ++. +..-..++++|+.+.+..|+ ++.. ...-.+++.|+.+++..+... ++...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 3455555555442 221 11112356778888887775 2221 111134566777777776543 2333345677
Q ss_pred CCceEEcCCCc-CCcC-----ChhhhCCCccceEEccCCcCCc-cChhhhhcCccCCeEecccC
Q 028942 100 SLEELQANDNL-IGEL-----PASICNLIHLKSLCLNNNNIGQ-IPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 100 ~L~~L~l~~n~-i~~~-----~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~l~l~~n 156 (201)
.|+.+.++.+. +++- ...-.....+..+.+.+++... -...-+..|++|+.+++-+.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 77877777663 3322 2222334567777777777622 22233566777777666543
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.26 E-value=85 Score=31.90 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=23.3
Q ss_pred ecCCCcCcccCc-cccCCCCCcEEeccCCCCc
Q 028942 13 VLDDNHIERLPV-NLGKLQSLKVMTLDGNRIT 43 (201)
Q Consensus 13 ~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~ 43 (201)
+|++|.|..++. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 467788887754 4677888888888887665
Done!