Query 028942
Match_columns 201
No_of_seqs 142 out of 2299
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 07:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 4.7E-22 1.6E-26 150.9 12.5 156 3-158 100-265 (328)
2 2o6q_A Variable lymphocyte rec 99.9 1.5E-20 5.1E-25 138.9 18.3 161 2-162 56-221 (270)
3 3rfs_A Internalin B, repeat mo 99.9 1.1E-20 3.7E-25 139.7 17.6 171 2-177 58-232 (272)
4 4fcg_A Uncharacterized protein 99.9 2.4E-21 8.3E-26 146.9 13.4 169 2-171 122-302 (328)
5 1ozn_A Reticulon 4 receptor; N 99.9 7.3E-21 2.5E-25 141.5 15.2 160 3-162 76-241 (285)
6 3m19_A Variable lymphocyte rec 99.9 1.8E-20 6.2E-25 137.0 15.8 156 7-162 35-195 (251)
7 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-20 4.2E-25 140.3 14.0 158 3-160 52-215 (285)
8 1p9a_G Platelet glycoprotein I 99.9 2.2E-20 7.5E-25 139.4 14.9 159 2-162 50-211 (290)
9 1h6u_A Internalin H; cell adhe 99.8 5.2E-20 1.8E-24 138.4 16.4 152 2-160 58-209 (308)
10 1p9a_G Platelet glycoprotein I 99.8 3.2E-20 1.1E-24 138.5 14.3 151 8-159 32-185 (290)
11 2o6q_A Variable lymphocyte rec 99.8 5.6E-20 1.9E-24 135.8 15.3 154 7-160 37-195 (270)
12 2z62_A TOLL-like receptor 4, v 99.8 6.2E-20 2.1E-24 135.9 15.3 161 2-162 47-240 (276)
13 2xwt_C Thyrotropin receptor; s 99.8 6.2E-21 2.1E-25 138.4 9.5 156 3-159 51-218 (239)
14 3e6j_A Variable lymphocyte rec 99.8 9E-20 3.1E-24 131.6 15.2 152 9-162 21-175 (229)
15 1h6t_A Internalin B; cell adhe 99.8 7.5E-20 2.6E-24 136.5 14.7 152 3-161 64-215 (291)
16 2v9t_B SLIT homolog 2 protein 99.8 6.9E-20 2.4E-24 131.4 13.8 151 10-162 14-168 (220)
17 2z66_A Variable lymphocyte rec 99.8 2.8E-20 9.6E-25 139.6 11.6 111 51-161 148-263 (306)
18 4ezg_A Putative uncharacterize 99.8 5.7E-20 1.9E-24 129.7 12.4 152 4-160 41-195 (197)
19 3rfs_A Internalin B, repeat mo 99.8 1.3E-19 4.4E-24 134.0 14.5 158 3-162 37-197 (272)
20 1xeu_A Internalin C; cellular 99.8 5.6E-20 1.9E-24 135.3 12.0 154 3-164 37-190 (263)
21 3zyj_A Leucine-rich repeat-con 99.8 9.3E-20 3.2E-24 143.3 13.9 159 3-162 84-295 (440)
22 3zyi_A Leucine-rich repeat-con 99.8 1.4E-19 4.7E-24 142.8 14.2 160 3-162 95-306 (452)
23 1ogq_A PGIP-2, polygalacturona 99.8 4.5E-20 1.5E-24 139.1 10.8 110 3-112 72-187 (313)
24 1h6u_A Internalin H; cell adhe 99.8 2.3E-19 8E-24 134.9 14.7 153 3-162 81-233 (308)
25 2z66_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 139.3 9.8 153 9-161 80-238 (306)
26 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-19 7.8E-24 128.7 13.7 151 10-162 14-169 (220)
27 1ogq_A PGIP-2, polygalacturona 99.8 6.5E-20 2.2E-24 138.2 11.1 157 2-159 96-281 (313)
28 3zyi_A Leucine-rich repeat-con 99.8 1.6E-19 5.3E-24 142.5 13.8 86 50-135 215-303 (452)
29 3zyj_A Leucine-rich repeat-con 99.8 1.9E-19 6.4E-24 141.6 13.8 84 51-134 205-291 (440)
30 1h6t_A Internalin B; cell adhe 99.8 4.3E-19 1.5E-23 132.4 14.4 151 3-160 42-192 (291)
31 1m9s_A Internalin B; cell inva 99.8 6.1E-19 2.1E-23 143.4 15.4 156 2-164 60-215 (605)
32 2z7x_B TOLL-like receptor 1, v 99.8 6.3E-19 2.2E-23 141.2 15.2 157 4-162 321-484 (520)
33 3m19_A Variable lymphocyte rec 99.8 8.3E-19 2.8E-23 128.2 14.5 153 7-161 14-170 (251)
34 1xku_A Decorin; proteoglycan, 99.8 8E-19 2.7E-23 133.1 14.3 156 2-159 71-253 (330)
35 4fmz_A Internalin; leucine ric 99.8 3.6E-18 1.2E-22 130.2 16.6 153 3-159 151-324 (347)
36 2z80_A TOLL-like receptor 2, v 99.8 2.8E-19 9.4E-24 136.8 10.5 158 3-160 72-236 (353)
37 2xot_A Amphoterin-induced prot 99.8 6.6E-19 2.3E-23 135.2 12.5 156 7-162 39-205 (361)
38 2z62_A TOLL-like receptor 4, v 99.8 1.5E-18 5E-23 128.5 13.7 153 7-159 28-190 (276)
39 3o6n_A APL1; leucine-rich repe 99.8 1.4E-18 4.9E-23 134.5 13.4 84 3-86 89-175 (390)
40 4ecn_A Leucine-rich repeat pro 99.8 5.5E-19 1.9E-23 148.5 11.8 156 2-159 443-632 (876)
41 1xku_A Decorin; proteoglycan, 99.8 1.8E-18 6.2E-23 131.1 13.7 153 7-159 121-306 (330)
42 3o6n_A APL1; leucine-rich repe 99.8 2.2E-18 7.4E-23 133.5 14.0 164 3-167 113-339 (390)
43 2o6s_A Variable lymphocyte rec 99.8 1.1E-17 3.9E-22 118.8 16.6 162 10-177 10-175 (208)
44 2xwt_C Thyrotropin receptor; s 99.8 3E-19 1E-23 129.5 8.4 152 7-160 31-194 (239)
45 4eco_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 146.3 9.4 156 2-159 201-390 (636)
46 3o53_A Protein LRIM1, AGAP0063 99.8 2.1E-18 7.2E-23 130.2 13.2 152 29-182 119-277 (317)
47 2z81_A CD282 antigen, TOLL-lik 99.8 2.3E-18 8E-23 138.7 14.3 158 5-163 332-514 (549)
48 3rgz_A Protein brassinosteroid 99.8 2.9E-18 9.8E-23 143.3 15.1 83 5-87 464-549 (768)
49 4glp_A Monocyte differentiatio 99.8 8.5E-19 2.9E-23 131.9 10.8 150 6-159 144-307 (310)
50 4fmz_A Internalin; leucine ric 99.8 6.9E-18 2.4E-22 128.6 15.9 151 3-159 128-278 (347)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.7E-18 9.2E-23 138.9 14.1 158 4-163 350-514 (562)
52 2z63_A TOLL-like receptor 4, v 99.8 7.9E-19 2.7E-23 141.9 11.0 160 3-162 369-534 (570)
53 3rgz_A Protein brassinosteroid 99.8 3.5E-18 1.2E-22 142.8 15.1 159 2-161 485-719 (768)
54 3vq2_A TLR4, TOLL-like recepto 99.8 1.7E-18 5.9E-23 141.0 13.0 159 3-162 395-561 (606)
55 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-18 4E-23 132.3 11.0 155 3-159 74-254 (332)
56 1wwl_A Monocyte differentiatio 99.8 1.4E-18 4.8E-23 130.8 11.2 155 4-161 118-289 (312)
57 1m9s_A Internalin B; cell inva 99.8 3E-18 1E-22 139.3 13.6 151 3-160 39-189 (605)
58 3v47_A TOLL-like receptor 5B a 99.8 3.9E-18 1.3E-22 134.5 13.8 134 30-163 275-412 (455)
59 4eco_A Uncharacterized protein 99.8 1.1E-18 3.9E-23 142.9 11.2 153 6-159 304-470 (636)
60 3vq2_A TLR4, TOLL-like recepto 99.8 7.6E-19 2.6E-23 143.1 10.1 155 5-159 374-534 (606)
61 3oja_B Anopheles plasmodium-re 99.8 2.9E-18 9.8E-23 139.7 13.4 64 95-159 274-337 (597)
62 3oja_B Anopheles plasmodium-re 99.8 3.6E-18 1.2E-22 139.1 13.9 112 50-164 251-363 (597)
63 2z80_A TOLL-like receptor 2, v 99.8 2.5E-18 8.6E-23 131.5 11.5 154 7-160 52-212 (353)
64 2id5_A Lingo-1, leucine rich r 99.8 3.6E-18 1.2E-22 135.5 12.7 154 7-160 32-190 (477)
65 2ell_A Acidic leucine-rich nuc 99.8 6E-18 2.1E-22 116.2 12.1 129 30-159 24-160 (168)
66 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.9E-23 128.3 8.8 149 5-161 17-165 (263)
67 1ziw_A TOLL-like receptor 3; i 99.8 1.1E-17 3.7E-22 138.1 15.5 159 4-162 451-625 (680)
68 2id5_A Lingo-1, leucine rich r 99.8 6.4E-18 2.2E-22 134.1 13.6 156 2-157 51-211 (477)
69 4ecn_A Leucine-rich repeat pro 99.8 5.6E-18 1.9E-22 142.4 13.7 154 5-159 546-710 (876)
70 2ft3_A Biglycan; proteoglycan, 99.8 3.3E-18 1.1E-22 129.8 11.0 162 2-166 97-284 (332)
71 3oja_A Leucine-rich immune mol 99.8 5.4E-18 1.8E-22 134.9 12.2 140 32-173 122-265 (487)
72 3cvr_A Invasion plasmid antige 99.8 1.1E-17 3.9E-22 134.8 14.1 148 6-169 99-253 (571)
73 1ziw_A TOLL-like receptor 3; i 99.8 1.1E-17 3.9E-22 137.9 13.7 159 3-161 401-599 (680)
74 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-17 5.5E-22 135.5 14.0 152 8-159 53-214 (635)
75 3t6q_A CD180 antigen; protein- 99.7 1.7E-17 5.8E-22 135.2 13.8 157 3-159 274-462 (606)
76 3v47_A TOLL-like receptor 5B a 99.7 2.3E-17 7.9E-22 130.0 14.0 89 72-160 295-385 (455)
77 1wwl_A Monocyte differentiatio 99.7 7.3E-18 2.5E-22 126.9 10.7 155 5-159 93-266 (312)
78 3bz5_A Internalin-J, INLJ; leu 99.7 2.7E-17 9.3E-22 129.9 14.0 102 4-112 39-140 (457)
79 2xot_A Amphoterin-induced prot 99.7 2.2E-17 7.6E-22 126.7 13.0 150 10-161 21-178 (361)
80 2o6s_A Variable lymphocyte rec 99.7 1.6E-17 5.5E-22 118.0 11.2 152 6-164 27-183 (208)
81 3bz5_A Internalin-J, INLJ; leu 99.7 1.8E-17 6.3E-22 130.9 12.5 158 2-172 59-217 (457)
82 1o6v_A Internalin A; bacterial 99.7 7.4E-17 2.5E-21 127.7 15.6 150 3-159 217-366 (466)
83 1o6v_A Internalin A; bacterial 99.7 1.2E-16 4.1E-21 126.5 16.6 150 3-159 195-344 (466)
84 2z63_A TOLL-like receptor 4, v 99.7 6.2E-18 2.1E-22 136.7 9.4 159 4-162 344-510 (570)
85 2ell_A Acidic leucine-rich nuc 99.7 2.4E-17 8.1E-22 113.2 11.0 134 5-139 22-164 (168)
86 3t6q_A CD180 antigen; protein- 99.7 3.3E-17 1.1E-21 133.4 13.7 159 3-161 346-515 (606)
87 2z81_A CD282 antigen, TOLL-lik 99.7 1.8E-17 6E-22 133.6 11.8 153 8-160 27-210 (549)
88 1a9n_A U2A', U2A'; complex (nu 99.7 1.7E-17 5.9E-22 114.9 9.8 132 26-159 15-153 (176)
89 3e6j_A Variable lymphocyte rec 99.7 7.7E-17 2.6E-21 116.2 13.3 130 7-136 40-173 (229)
90 2wfh_A SLIT homolog 2 protein 99.7 6.6E-17 2.3E-21 113.5 12.2 128 33-162 13-142 (193)
91 4ezg_A Putative uncharacterize 99.7 8.7E-17 3E-21 113.3 12.5 132 2-136 61-195 (197)
92 2v9t_B SLIT homolog 2 protein 99.7 8.9E-17 3.1E-21 115.2 12.5 129 7-135 32-165 (220)
93 4g8a_A TOLL-like receptor 4; l 99.7 7.4E-17 2.5E-21 131.6 13.4 151 12-164 36-191 (635)
94 2ast_B S-phase kinase-associat 99.7 1.4E-17 4.9E-22 126.3 8.2 158 4-161 90-263 (336)
95 2je0_A Acidic leucine-rich nuc 99.7 6.1E-17 2.1E-21 109.0 10.4 124 30-154 17-148 (149)
96 4glp_A Monocyte differentiatio 99.7 5.5E-18 1.9E-22 127.5 5.8 153 6-159 90-264 (310)
97 1a9n_A U2A', U2A'; complex (nu 99.7 5.9E-17 2E-21 112.1 10.2 134 2-136 14-154 (176)
98 2je0_A Acidic leucine-rich nuc 99.7 4.6E-17 1.6E-21 109.6 9.0 125 5-130 15-148 (149)
99 2v70_A SLIT-2, SLIT homolog 2 99.7 1.9E-16 6.4E-21 113.5 12.6 129 7-135 32-166 (220)
100 3o53_A Protein LRIM1, AGAP0063 99.7 7.2E-17 2.5E-21 121.7 10.7 153 4-159 31-204 (317)
101 2z7x_B TOLL-like receptor 1, v 99.7 2.5E-16 8.4E-21 126.2 14.0 142 10-158 3-150 (520)
102 4b8c_D Glucose-repressible alc 99.7 1.3E-17 4.4E-22 138.4 6.2 116 23-138 217-332 (727)
103 1w8a_A SLIT protein; signaling 99.7 1.6E-16 5.4E-21 111.5 10.6 128 33-162 11-142 (192)
104 3oja_A Leucine-rich immune mol 99.7 1.5E-16 5.1E-21 126.6 11.5 153 5-160 32-205 (487)
105 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4E-16 1.4E-20 126.2 13.6 146 6-158 30-181 (562)
106 2ast_B S-phase kinase-associat 99.7 8.4E-17 2.9E-21 122.1 8.2 163 3-166 114-291 (336)
107 3g06_A SSPH2 (leucine-rich rep 99.7 1E-15 3.4E-20 124.8 14.5 88 76-170 221-308 (622)
108 2ca6_A RAN GTPase-activating p 99.7 7.5E-17 2.6E-21 124.7 7.6 88 74-161 214-318 (386)
109 3cvr_A Invasion plasmid antige 99.7 5.7E-16 1.9E-20 125.0 12.7 136 8-159 60-220 (571)
110 4b8c_D Glucose-repressible alc 99.7 1.6E-16 5.4E-21 131.9 9.6 159 7-166 173-336 (727)
111 2ca6_A RAN GTPase-activating p 99.7 8.4E-17 2.9E-21 124.4 6.6 159 3-161 90-289 (386)
112 1ds9_A Outer arm dynein; leuci 99.7 2E-18 6.9E-23 121.8 -2.7 137 20-160 38-186 (198)
113 2wfh_A SLIT homolog 2 protein 99.7 2.6E-15 8.8E-20 105.4 12.9 124 10-135 13-139 (193)
114 3j0a_A TOLL-like receptor 5; m 99.7 7.7E-16 2.6E-20 129.9 11.7 154 7-160 24-188 (844)
115 1w8a_A SLIT protein; signaling 99.6 2E-15 7E-20 105.8 11.4 124 10-135 11-139 (192)
116 1jl5_A Outer protein YOPM; leu 99.6 3.7E-15 1.3E-19 117.6 14.0 120 7-135 131-250 (454)
117 2o6r_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 102.9 12.5 129 32-162 9-140 (177)
118 1jl5_A Outer protein YOPM; leu 99.6 5E-15 1.7E-19 116.9 14.3 120 30-159 131-250 (454)
119 3j0a_A TOLL-like receptor 5; m 99.6 3.1E-15 1.1E-19 126.2 12.7 162 2-163 43-221 (844)
120 4ay9_X Follicle-stimulating ho 99.6 7.4E-16 2.5E-20 117.7 7.1 167 7-173 30-229 (350)
121 1dce_A Protein (RAB geranylger 99.6 5.2E-15 1.8E-19 119.6 12.0 121 31-153 442-567 (567)
122 3goz_A Leucine-rich repeat-con 99.6 2E-15 6.7E-20 115.9 9.1 62 100-161 168-240 (362)
123 1dce_A Protein (RAB geranylger 99.6 9E-15 3.1E-19 118.2 13.2 137 23-161 402-548 (567)
124 3goz_A Leucine-rich repeat-con 99.6 3.8E-15 1.3E-19 114.3 10.1 156 7-162 22-212 (362)
125 3g06_A SSPH2 (leucine-rich rep 99.6 3.6E-14 1.2E-18 115.7 15.0 96 8-115 62-157 (622)
126 2o6r_A Variable lymphocyte rec 99.6 6E-14 2E-18 97.0 12.9 129 8-138 8-140 (177)
127 3g39_A Variable lymphocyte rec 99.5 8E-14 2.7E-18 95.8 10.1 106 55-162 11-118 (170)
128 1z7x_W Ribonuclease inhibitor; 99.5 6.7E-15 2.3E-19 116.1 5.0 86 77-163 314-415 (461)
129 1ds9_A Outer arm dynein; leuci 99.5 8E-16 2.7E-20 108.4 -0.5 120 41-162 36-156 (198)
130 2r9u_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 95.5 10.1 105 56-162 15-121 (174)
131 1z7x_W Ribonuclease inhibitor; 99.5 4.8E-14 1.6E-18 111.2 7.1 153 8-160 200-384 (461)
132 3sb4_A Hypothetical leucine ri 99.4 1.5E-13 5.1E-18 104.1 7.4 83 75-159 225-310 (329)
133 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.3E-17 90.1 11.3 102 10-113 15-119 (174)
134 3g39_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 90.0 10.5 102 9-112 11-115 (170)
135 3un9_A NLR family member X1; l 99.4 9.5E-14 3.3E-18 106.8 4.1 163 6-168 71-261 (372)
136 4ay9_X Follicle-stimulating ho 99.4 8.2E-13 2.8E-17 100.8 7.7 148 2-149 49-229 (350)
137 3sb4_A Hypothetical leucine ri 99.4 3.7E-12 1.3E-16 96.4 10.6 100 52-153 225-328 (329)
138 2ifg_A High affinity nerve gro 99.3 9.6E-12 3.3E-16 94.7 9.7 99 35-134 13-115 (347)
139 3un9_A NLR family member X1; l 99.3 1.5E-12 5E-17 100.2 3.8 156 6-161 100-285 (372)
140 2ifg_A High affinity nerve gro 99.3 4.4E-11 1.5E-15 91.0 10.5 103 10-113 11-117 (347)
141 3ogk_B Coronatine-insensitive 99.2 1.9E-11 6.6E-16 99.2 8.1 149 5-154 162-350 (592)
142 3ogk_B Coronatine-insensitive 99.2 3.9E-11 1.3E-15 97.4 6.9 161 4-165 189-397 (592)
143 4fdw_A Leucine rich hypothetic 99.1 1.4E-09 4.8E-14 84.4 12.5 152 2-158 175-357 (401)
144 4fdw_A Leucine rich hypothetic 99.0 1.6E-09 5.4E-14 84.1 10.7 60 25-85 175-235 (401)
145 2p1m_B Transport inhibitor res 99.0 6.8E-11 2.3E-15 95.9 2.8 56 97-153 287-345 (594)
146 2p1m_B Transport inhibitor res 99.0 2E-10 7E-15 93.2 4.1 17 144-160 287-303 (594)
147 1io0_A Tropomodulin; LRR prote 98.9 1.9E-09 6.6E-14 74.8 5.4 115 48-162 31-167 (185)
148 2ra8_A Uncharacterized protein 98.9 9.7E-09 3.3E-13 78.6 9.1 162 4-167 136-328 (362)
149 1io0_A Tropomodulin; LRR prote 98.9 5.2E-09 1.8E-13 72.7 7.0 114 23-136 29-165 (185)
150 2ra8_A Uncharacterized protein 98.6 1E-07 3.6E-12 72.9 7.6 150 4-157 169-341 (362)
151 4h09_A Hypothetical leucine ri 98.3 9.7E-06 3.3E-10 62.2 12.5 127 26-156 213-343 (379)
152 3rw6_A Nuclear RNA export fact 98.3 3.4E-07 1.2E-11 66.9 3.7 61 98-159 169-233 (267)
153 4fs7_A Uncharacterized protein 98.1 3.3E-05 1.1E-09 59.6 11.7 82 72-156 293-376 (394)
154 4gt6_A Cell surface protein; l 98.1 5.7E-05 1.9E-09 58.3 12.7 120 48-171 260-382 (394)
155 4fs7_A Uncharacterized protein 98.1 1.8E-05 6.1E-10 61.1 9.5 58 2-61 66-125 (394)
156 3rw6_A Nuclear RNA export fact 98.1 4.9E-06 1.7E-10 60.8 5.6 94 12-106 148-258 (267)
157 4h09_A Hypothetical leucine ri 98.1 4.6E-05 1.6E-09 58.4 11.0 140 4-148 214-358 (379)
158 4gt6_A Cell surface protein; l 98.0 0.00011 3.9E-09 56.6 12.4 96 73-171 262-361 (394)
159 3rfe_A Platelet glycoprotein I 98.0 1.3E-05 4.4E-10 52.1 6.0 59 102-162 11-71 (130)
160 3e4g_A ATP synthase subunit S, 97.9 7.6E-06 2.6E-10 55.8 3.9 84 77-160 62-154 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 3.3E-05 1.1E-09 53.7 6.8 111 49-159 37-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 7.7E-05 2.6E-09 51.8 7.7 108 27-134 38-169 (197)
163 3e4g_A ATP synthase subunit S, 97.5 4.9E-05 1.7E-09 51.8 2.8 83 91-173 53-142 (176)
164 3rfe_A Platelet glycoprotein I 96.8 0.003 1E-07 40.8 5.9 53 11-65 12-67 (130)
165 2lz0_A Uncharacterized protein 77.6 3.4 0.00012 24.9 4.0 38 117-155 15-52 (100)
166 2lz0_A Uncharacterized protein 64.3 9.9 0.00034 22.8 3.9 45 18-63 7-53 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=4.7e-22 Score=150.86 Aligned_cols=156 Identities=25% Similarity=0.348 Sum_probs=82.2
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCc-ccchhhh--------
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLT-CLPETIG-------- 73 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~-------- 73 (201)
+.++++|++|++++|.+..+|..+..+++|+.|++++|.++.+|..+..+++|++|++++|... .+|..+.
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 4445566666666666555555555566666666666666555555555555555555554322 2333322
Q ss_pred -cCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEe
Q 028942 74 -SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 152 (201)
Q Consensus 74 -~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~ 152 (201)
.+++|++|++++|.+..+|..+..+++|+.|++++|.++.++..+..+++|+.|++++|.+.......+..+++|+.|+
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 2455555555555555555555555555555555555555555555555555555555544222222244455555555
Q ss_pred cccCCC
Q 028942 153 LHNNPI 158 (201)
Q Consensus 153 l~~n~l 158 (201)
+.+|.+
T Consensus 260 L~~n~~ 265 (328)
T 4fcg_A 260 LKDCSN 265 (328)
T ss_dssp CTTCTT
T ss_pred CCCCCc
Confidence 555443
No 2
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.5e-20 Score=138.86 Aligned_cols=161 Identities=30% Similarity=0.512 Sum_probs=133.7
Q ss_pred ccccCCCccEEecCCCcCcccCcc-ccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccch-hhhcCCCC
Q 028942 2 EISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNL 78 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L 78 (201)
.|.++++|++|++++|.++.++.. |..+++|+.|++++|.+..++.. +..+++|++|++++|.++.+++ .+..+++|
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 467788888888888888877654 57788888888888888877543 5678888899998888888754 46788899
Q ss_pred CEEEeeCCCCCcCccc-ccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942 79 VLLNVSNNKLKSLPES-IGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 79 ~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n 156 (201)
++|++++|.+..++.. +..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..++...+..+++|+.|++.+|
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 9999999988887653 6788999999999999988875 4777899999999999999888887888999999999999
Q ss_pred CCChhh
Q 028942 157 PISMDQ 162 (201)
Q Consensus 157 ~l~~~~ 162 (201)
++.|+.
T Consensus 216 ~~~c~c 221 (270)
T 2o6q_A 216 PWDCTC 221 (270)
T ss_dssp CBCCSS
T ss_pred CeeCCC
Confidence 998775
No 3
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.1e-20 Score=139.75 Aligned_cols=171 Identities=31% Similarity=0.498 Sum_probs=144.9
Q ss_pred ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchh-hhcCCCCC
Q 028942 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET-IGSLRNLV 79 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~ 79 (201)
.+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.++.. +..++.|++|++++|.++.+++. +..+++|+
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 4677899999999999988864 788899999999999999987654 67899999999999999988654 67889999
Q ss_pred EEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCC
Q 028942 80 LLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 157 (201)
Q Consensus 80 ~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~ 157 (201)
+|++++|.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..++...+..+++|+.|++.+|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 99999999998765 457899999999999999988654 5788999999999999998888878999999999999999
Q ss_pred CChhhhccccChhHHHHHHh
Q 028942 158 ISMDQFQQMEGFEEFEARRR 177 (201)
Q Consensus 158 l~~~~~~~l~~~~~l~~~~~ 177 (201)
+.+.. +.+..+....+
T Consensus 217 ~~~~~----~~l~~l~~~~n 232 (272)
T 3rfs_A 217 WDCTC----PGIRYLSEWIN 232 (272)
T ss_dssp BCCCT----TTTHHHHHHHH
T ss_pred ccccC----cHHHHHHHHHH
Confidence 88653 34555554443
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2.4e-21 Score=146.93 Aligned_cols=169 Identities=22% Similarity=0.318 Sum_probs=144.9
Q ss_pred ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCC-ccCchhhh---------CcCCCCEEEecCCcCcccchh
Q 028942 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRI-TSLPDELG---------QLVRLERLSILGNMLTCLPET 71 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l-~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~ 71 (201)
+|.++++|++|++++|.+..+|..+..+++|+.|++++|.+ ..+|..+. .+++|++|++++|.++.+|..
T Consensus 122 ~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~ 201 (328)
T 4fcg_A 122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201 (328)
T ss_dssp CGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG
T ss_pred HHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh
Confidence 47889999999999999999999999999999999999654 46666554 389999999999999999999
Q ss_pred hhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCC-cCChhhhCCCccceEEccCCcC-CccChhhhhcCccCC
Q 028942 72 IGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQ 149 (201)
Q Consensus 72 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~L~ 149 (201)
+..+++|++|++++|.+..+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+ ..+|.. +..+++|+
T Consensus 202 l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~ 280 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLE 280 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCC
T ss_pred hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCC
Confidence 99999999999999999999888999999999999998765 6777888999999999999887 556654 78999999
Q ss_pred eEecccCCCChhhhccccChhH
Q 028942 150 NISLHNNPISMDQFQQMEGFEE 171 (201)
Q Consensus 150 ~l~l~~n~l~~~~~~~l~~~~~ 171 (201)
.|++++|.+.......+..++.
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCT
T ss_pred EEeCCCCCchhhccHHHhhccC
Confidence 9999999877554444444333
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=7.3e-21 Score=141.52 Aligned_cols=160 Identities=30% Similarity=0.460 Sum_probs=95.3
Q ss_pred cccCCCccEEecCCCc-Cccc-CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccch-hhhcCCCC
Q 028942 3 ISKLINIQRLVLDDNH-IERL-PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPE-TIGSLRNL 78 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~-l~~l-~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L 78 (201)
|.++++|++|++++|. +..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.+++ .+..+++|
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 155 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc
Confidence 3344444444444443 4443 33444455555555555555444 2334455555566665555555543 24555666
Q ss_pred CEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942 79 VLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 79 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n 156 (201)
++|++++|.+..++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++...+..+++|+.|++.+|
T Consensus 156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 666666666665543 355566666666666666654 455666777777777777777777766777888888888888
Q ss_pred CCChhh
Q 028942 157 PISMDQ 162 (201)
Q Consensus 157 ~l~~~~ 162 (201)
++.++.
T Consensus 236 ~~~c~~ 241 (285)
T 1ozn_A 236 PWVCDC 241 (285)
T ss_dssp CEECSG
T ss_pred CccCCC
Confidence 877654
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.8e-20 Score=137.01 Aligned_cols=156 Identities=28% Similarity=0.436 Sum_probs=138.4
Q ss_pred CCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEe
Q 028942 7 INIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNV 83 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 83 (201)
..++.|++++|.+..++ ..|..+++|+.|++++|.++.++. .+..+++|++|++++|.++.+++ .+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 46889999999999774 468999999999999999997754 47889999999999999998864 5678899999999
Q ss_pred eCCCCCcCccc-ccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942 84 SNNKLKSLPES-IGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
++|.+..++.. +..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.++
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999988764 5789999999999999998876 578899999999999999999887789999999999999999987
Q ss_pred h
Q 028942 162 Q 162 (201)
Q Consensus 162 ~ 162 (201)
.
T Consensus 195 ~ 195 (251)
T 3m19_A 195 R 195 (251)
T ss_dssp S
T ss_pred c
Confidence 3
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=1.2e-20 Score=140.30 Aligned_cols=158 Identities=25% Similarity=0.356 Sum_probs=115.6
Q ss_pred cccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCC-CccC-chhhhCcCCCCEEEecCCcCccc-chhhhcCCCC
Q 028942 3 ISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNR-ITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNL 78 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~-l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L 78 (201)
|.++++|++|++++|.++.+ +..+..+++|+.|++++|. +..+ +..+..+++|++|++++|.++.+ +..+..+++|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 56677777777777777765 5567777777777777775 6665 45566777788888887777766 3456667778
Q ss_pred CEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942 79 VLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 79 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n 156 (201)
++|++++|.+..++. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..+....+..+++|+.|++++|
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 888888887776654 36677788888888887777665 3667778888888888887665555677888888888888
Q ss_pred CCCh
Q 028942 157 PISM 160 (201)
Q Consensus 157 ~l~~ 160 (201)
.++.
T Consensus 212 ~l~~ 215 (285)
T 1ozn_A 212 NLSA 215 (285)
T ss_dssp CCSC
T ss_pred cCCc
Confidence 7764
No 8
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.2e-20 Score=139.36 Aligned_cols=159 Identities=31% Similarity=0.406 Sum_probs=127.2
Q ss_pred ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccc-hhhhcCCCCCE
Q 028942 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVL 80 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~ 80 (201)
.|.++++|+.|++++|.++.++.. ..+++|+.|++++|.++.+|..+..+++|++|++++|.++.++ ..+..+++|++
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred HhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 356777788888888877776554 6678888888888888888777778888888888888888875 45778888999
Q ss_pred EEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCC
Q 028942 81 LNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158 (201)
Q Consensus 81 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l 158 (201)
|++++|.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..+|..+ ..+..|+.+++.+|++
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~-~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCCCSEEECCSCCB
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhh-cccccCCeEEeCCCCc
Confidence 9999988887765 356788899999999988888764 466888999999999998888774 4456899999999999
Q ss_pred Chhh
Q 028942 159 SMDQ 162 (201)
Q Consensus 159 ~~~~ 162 (201)
.|++
T Consensus 208 ~C~c 211 (290)
T 1p9a_G 208 LCNC 211 (290)
T ss_dssp CCSG
T ss_pred cCcC
Confidence 8774
No 9
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.2e-20 Score=138.45 Aligned_cols=152 Identities=25% Similarity=0.401 Sum_probs=109.2
Q ss_pred ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL 81 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 81 (201)
.+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEE
Confidence 35567777777777777777766 777777777777777777664 46667777777777777777654 6677777777
Q ss_pred EeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942 82 NVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+..++. +..+++|++|++++|.++.
T Consensus 135 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 135 YLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp ECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence 777777776654 6667777777777777776655 6667777777777777766654 5667777777777777663
No 10
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=3.2e-20 Score=138.46 Aligned_cols=151 Identities=30% Similarity=0.413 Sum_probs=103.3
Q ss_pred CccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCC
Q 028942 8 NIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNN 86 (201)
Q Consensus 8 ~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 86 (201)
.++.|++++|.+..+ +..|..+++|+.|++++|.++.++.. ..+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence 455555555555544 34456666666666666666655433 4566677777777777766666666777777777777
Q ss_pred CCCcCc-ccccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 87 KLKSLP-ESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 87 ~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
.+..++ ..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..++..++..+++|+.|++++|.++
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 777665 3466777777777777777766543 456777778888888777777776777778888888877776
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=5.6e-20 Score=135.78 Aligned_cols=154 Identities=31% Similarity=0.476 Sum_probs=136.0
Q ss_pred CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEe
Q 028942 7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNV 83 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 83 (201)
++++.|++++|.+..++. .|..+++|+.|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 468999999999998865 688999999999999999988765 4779999999999999998865 4578899999999
Q ss_pred eCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942 84 SNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
++|.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..++...+..+++|+.|++++|.++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 9999998754 568899999999999999988764 6789999999999999999988778899999999999998874
No 12
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=6.2e-20 Score=135.90 Aligned_cols=161 Identities=30% Similarity=0.426 Sum_probs=118.1
Q ss_pred ccccCCCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCC
Q 028942 2 EISKLINIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNL 78 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L 78 (201)
.|.++++|++|++++|.+..++. .|..+++|+.|++++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 46677788888888888776644 5777788888888888777654 456677777777777777776643 45666777
Q ss_pred CEEEeeCCCCCc--CcccccCCCCCceEEcCCCcCCcCC----------------------------hhhhCCCccceEE
Q 028942 79 VLLNVSNNKLKS--LPESIGSCYSLEELQANDNLIGELP----------------------------ASICNLIHLKSLC 128 (201)
Q Consensus 79 ~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~----------------------------~~~~~~~~L~~L~ 128 (201)
++|++++|.+.. +|..+..+++|+.|++++|.++.++ .......+|+.|+
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~ 206 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence 777777777764 4566666777777777777665442 2222233688899
Q ss_pred ccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 129 LNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 129 l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
+++|.++.++..++..+++|+.+++.+|++.|+.
T Consensus 207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 9999998888888889999999999999999875
No 13
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=6.2e-21 Score=138.44 Aligned_cols=156 Identities=17% Similarity=0.283 Sum_probs=83.1
Q ss_pred cccCCCccEEecCCCc-CcccCc-cccCCCCCcEEeccC-CCCccCch-hhhCcCCCCEEEecCCcCcccchhhhcCCCC
Q 028942 3 ISKLINIQRLVLDDNH-IERLPV-NLGKLQSLKVMTLDG-NRITSLPD-ELGQLVRLERLSILGNMLTCLPETIGSLRNL 78 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~l~l~~-~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 78 (201)
|.++++|+.|++++|. ++.+++ .|..+++|+.+++++ |.++.++. .+..+++|++|++++|.++.+|. +..+.+|
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L 129 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYST 129 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccccc
Confidence 4445555555555554 554433 455555555555554 55554432 34455555555555555555544 4444455
Q ss_pred C---EEEeeCC-CCCcCcc-cccCCCCCc-eEEcCCCcCCcCChhhhCCCccceEEccCCc-CCccChhhhhcC-ccCCe
Q 028942 79 V---LLNVSNN-KLKSLPE-SIGSCYSLE-ELQANDNLIGELPASICNLIHLKSLCLNNNN-IGQIPANLLKDC-KALQN 150 (201)
Q Consensus 79 ~---~L~l~~~-~~~~~~~-~~~~~~~L~-~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~-~~L~~ 150 (201)
+ ++++++| .+..++. .+..+++|+ .+++++|.++.++......++|+.|++++|. ++.++...+.++ ++|+.
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 4 5555555 5555443 345555566 6666666555555432223556666666663 555555555555 56666
Q ss_pred EecccCCCC
Q 028942 151 ISLHNNPIS 159 (201)
Q Consensus 151 l~l~~n~l~ 159 (201)
|++++|.++
T Consensus 210 L~l~~N~l~ 218 (239)
T 2xwt_C 210 LDVSQTSVT 218 (239)
T ss_dssp EECTTCCCC
T ss_pred EECCCCccc
Confidence 666666555
No 14
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=9e-20 Score=131.58 Aligned_cols=152 Identities=28% Similarity=0.415 Sum_probs=136.7
Q ss_pred ccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEeeCC
Q 028942 9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSNN 86 (201)
Q Consensus 9 L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 86 (201)
-+.++.+++.+..+|..+. ++|+.|++++|.++.+ |..+..+++|++|++++|.+..++.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4568888999999987664 7999999999999977 56688899999999999999998754 578999999999999
Q ss_pred CCCcCcc-cccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 87 KLKSLPE-SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
.+..++. .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.|+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9998865 467899999999999999999998999999999999999999998888899999999999999999875
No 15
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=7.5e-20 Score=136.54 Aligned_cols=152 Identities=27% Similarity=0.411 Sum_probs=91.2
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+..+++|++|++++|.+..+++ +..+++|+.|++++|.++.++. +..+++|++|++++|.++.+ +.+..+++|+.|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLY 140 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEE
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEE
Confidence 4455566666666666665554 5556666666666666655432 55566666666666666555 3455566666666
Q ss_pred eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942 83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
+++|.+..+ ..+..+++|+.|++++|.++.++. +..++.|+.|++++|.+..++. +..+++|+.|++.+|++...
T Consensus 141 l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 141 LGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECC
T ss_pred ccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCC
Confidence 666666655 345556666666666666665554 5556666666666666655543 45666666666666665443
No 16
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=6.9e-20 Score=131.41 Aligned_cols=151 Identities=26% Similarity=0.422 Sum_probs=135.4
Q ss_pred cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCC
Q 028942 10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNK 87 (201)
Q Consensus 10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 87 (201)
+.++.+++.++.+|..+. ++++.|++++|.++.++. .+..+++|++|++++|.++.+ |..+..+.+|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 568899999999987665 689999999999998865 678899999999999999987 6688999999999999999
Q ss_pred CCcCccc-ccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 88 LKSLPES-IGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 88 ~~~~~~~-~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
+..+|.. +..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+..++...+..+++|+.+++.+|++.|+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 9998764 578999999999999999874 56888999999999999999998888899999999999999999874
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=2.8e-20 Score=139.65 Aligned_cols=111 Identities=29% Similarity=0.341 Sum_probs=47.3
Q ss_pred CcCCCCEEEecCCcCcc--cchhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCCh-hhhCCCccce
Q 028942 51 QLVRLERLSILGNMLTC--LPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKS 126 (201)
Q Consensus 51 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~ 126 (201)
.+++|++|++++|.+.. +|..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 33344444444443332 233334444444444444444433 2233444444444444444444332 2334444555
Q ss_pred EEccCCcCCccChhhhhcC-ccCCeEecccCCCChh
Q 028942 127 LCLNNNNIGQIPANLLKDC-KALQNISLHNNPISMD 161 (201)
Q Consensus 127 L~l~~~~l~~~~~~~~~~~-~~L~~l~l~~n~l~~~ 161 (201)
|++++|.+.......+..+ ++|+.|++++|++.++
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 5555554433333223333 2455555555555443
No 18
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=5.7e-20 Score=129.66 Aligned_cols=152 Identities=19% Similarity=0.293 Sum_probs=129.9
Q ss_pred ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCCCEEE
Q 028942 4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLN 82 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~ 82 (201)
..+++|+.|++++|.+..++ .+..+++|+.|++++|.+..++ .+..++.|++|++++|.++. .+..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45678999999999999888 6888999999999999877664 67889999999999999986 466788899999999
Q ss_pred eeCCCCCc-CcccccCCCCCceEEcCCCc-CCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942 83 VSNNKLKS-LPESIGSCYSLEELQANDNL-IGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 83 l~~~~~~~-~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
+++|.+.. .+..+..+++|+.|++++|. ++.++ .+..++.|+.|++++|.+..++ .+..+++|+.|++.+|+|..
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 99999985 46678889999999999997 88887 6788999999999999998876 37889999999999998764
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.3e-19 Score=133.98 Aligned_cols=158 Identities=25% Similarity=0.433 Sum_probs=139.1
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLL 81 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L 81 (201)
+..+++|+.|++.++.+..++ .+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+++. +..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345788999999999988776 4778999999999999999874 778899999999999999988654 6889999999
Q ss_pred EeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 82 NVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 82 ~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
++++|.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..++...+..+++|+.|++.+|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 999999998765 468899999999999999988754 578999999999999999998887899999999999999988
Q ss_pred hhh
Q 028942 160 MDQ 162 (201)
Q Consensus 160 ~~~ 162 (201)
...
T Consensus 195 ~~~ 197 (272)
T 3rfs_A 195 SVP 197 (272)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 20
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.83 E-value=5.6e-20 Score=135.33 Aligned_cols=154 Identities=26% Similarity=0.288 Sum_probs=134.9
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++.... .+|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 457789999999999999888 68889999999999999998876 8899999999999999998865333 8999999
Q ss_pred eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
+++|.+..++ .+..+++|+.|++++|.++.++ .+..++.|+.|++++|.+..+ ..+..+++|+.|++.+|++....
T Consensus 113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 113 LDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred ccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 9999999875 4788999999999999999886 578899999999999999877 34788999999999999987654
Q ss_pred hc
Q 028942 163 FQ 164 (201)
Q Consensus 163 ~~ 164 (201)
..
T Consensus 189 ~~ 190 (263)
T 1xeu_A 189 VK 190 (263)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=9.3e-20 Score=143.35 Aligned_cols=159 Identities=28% Similarity=0.451 Sum_probs=85.0
Q ss_pred cccCCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch----------
Q 028942 3 ISKLINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE---------- 70 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~---------- 70 (201)
|.++++|+.|++++|.+..++ ..|..+++|+.|++++|.++.++. .+..+++|++|++++|.+..++.
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 455556666666666555443 345555555555555555555433 24445555555555554443321
Q ss_pred ----------------hhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCc------------------------
Q 028942 71 ----------------TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNL------------------------ 110 (201)
Q Consensus 71 ----------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~------------------------ 110 (201)
.+..+++|++|++++|.+..+|. +..+++|+.|++++|.
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 23334444444444444444332 3333444444444444
Q ss_pred CCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 111 IGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 111 i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
++.++ ..+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.|++
T Consensus 243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 43332 23445566666777777776666666667777777777777777664
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.4e-19 Score=142.83 Aligned_cols=160 Identities=26% Similarity=0.394 Sum_probs=87.5
Q ss_pred cccCCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccch----------
Q 028942 3 ISKLINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE---------- 70 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~---------- 70 (201)
|.++++|+.|++++|.+..++ ..|..+++|+.|++++|.++.++.. +..+++|++|++++|.+..++.
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 174 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence 455556666666666555442 3455555555555555555554332 4445555555555555443322
Q ss_pred ----------------hhhcCCCCCEEEeeCCCCCcC-----------------------cccccCCCCCceEEcCCCcC
Q 028942 71 ----------------TIGSLRNLVLLNVSNNKLKSL-----------------------PESIGSCYSLEELQANDNLI 111 (201)
Q Consensus 71 ----------------~~~~~~~L~~L~l~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~n~i 111 (201)
.+..+.+|++|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 123334444444444443333 22334444555555555554
Q ss_pred CcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 112 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 112 ~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
+.+ +..+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.|++
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 433 234555666777777777777776666677777777777777777664
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4.5e-20 Score=139.10 Aligned_cols=110 Identities=26% Similarity=0.444 Sum_probs=60.6
Q ss_pred cccCCCccEEecCC-CcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCc-ccchhhhcCCCC
Q 028942 3 ISKLINIQRLVLDD-NHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNL 78 (201)
Q Consensus 3 ~~~l~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L 78 (201)
|.++++|+.|++++ |.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 45555666666653 5544 34555555666666666665555 44555555555666666655555 345555555555
Q ss_pred CEEEeeCCCCC-cCcccccCCC-CCceEEcCCCcCC
Q 028942 79 VLLNVSNNKLK-SLPESIGSCY-SLEELQANDNLIG 112 (201)
Q Consensus 79 ~~L~l~~~~~~-~~~~~~~~~~-~L~~L~l~~n~i~ 112 (201)
++|++++|.+. .+|..+..++ .|+.|++++|.++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 55555555555 4444444444 5555555555444
No 24
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2.3e-19 Score=134.89 Aligned_cols=153 Identities=27% Similarity=0.427 Sum_probs=138.4
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+.++++|+.|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.++.+++ +..+++|+.|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLS 157 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEE
Confidence 678899999999999999876 68889999999999999998864 8899999999999999998866 88899999999
Q ss_pred eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
+++|.+..++. +..+++|+.|++++|.++.++. +..++.|+.|++++|.+..++. +..+++|+.|++++|+++...
T Consensus 158 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 158 IGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred ccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 99999998876 8889999999999999998876 7889999999999999988874 788999999999999987543
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=3.3e-20 Score=139.25 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=78.0
Q ss_pred ccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCch--hhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeC
Q 028942 9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD--ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSN 85 (201)
Q Consensus 9 L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 85 (201)
|++|++++|.+..++..+..+++|+.|++++|.+..++. .+..+++|++|++++|.+..+ +..+..+++|++|++++
T Consensus 80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 333333333333333334444444444444444443322 334444455555555544433 22344455555555555
Q ss_pred CCCCc--CcccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942 86 NKLKS--LPESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 86 ~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
|.+.. +|..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++...+..+++|+.|++++|.+...
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 55543 344455556666666666666554 34455566666666666666655554456666666666666666543
No 26
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=128.70 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=133.3
Q ss_pred cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCch--hhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCC
Q 028942 10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD--ELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNN 86 (201)
Q Consensus 10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 86 (201)
+.++++++.++.+|..+. ..++.|++++|.++.++. .+..+++|++|++++|.++.+++ .+..+.+|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 579999999999987664 457899999999997732 37889999999999999998865 6889999999999999
Q ss_pred CCCcCcc-cccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 87 KLKSLPE-SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
.+..++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 9998865 578899999999999999987 566888999999999999999887777899999999999999999875
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=6.5e-20 Score=138.23 Aligned_cols=157 Identities=22% Similarity=0.375 Sum_probs=90.9
Q ss_pred ccccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCc-ccchhhhcCC-C
Q 028942 2 EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLR-N 77 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~-~ 77 (201)
+|.++++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+. +
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~ 175 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhc
Confidence 3566677777777777776 55666777777777777777766 45666666777777777777766 4566666665 6
Q ss_pred CCEEEeeCCCCC-cCccccc-----------------------CCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCc
Q 028942 78 LVLLNVSNNKLK-SLPESIG-----------------------SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN 133 (201)
Q Consensus 78 L~~L~l~~~~~~-~~~~~~~-----------------------~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~ 133 (201)
|++|++++|.+. .+|..+. .+++|+.|++++|.++..+..+..+++|+.|++++|.
T Consensus 176 L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred CcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 666666666655 3344443 4444444444444444333333444455555555555
Q ss_pred CC-ccChhhhhcCccCCeEecccCCCC
Q 028942 134 IG-QIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 134 l~-~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
+. .+|. .+..+++|+.|++++|.++
T Consensus 256 l~~~~p~-~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 256 IYGTLPQ-GLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CEECCCG-GGGGCTTCCEEECCSSEEE
T ss_pred ccCcCCh-HHhcCcCCCEEECcCCccc
Confidence 53 2332 2445555555555555544
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.6e-19 Score=142.53 Aligned_cols=86 Identities=29% Similarity=0.344 Sum_probs=68.3
Q ss_pred hCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCCh-hhhCCCccce
Q 028942 50 GQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKS 126 (201)
Q Consensus 50 ~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~ 126 (201)
..+++|++|++++|.++.+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 3444556666666666655 45678888999999999999876 4567889999999999999998875 4677899999
Q ss_pred EEccCCcCC
Q 028942 127 LCLNNNNIG 135 (201)
Q Consensus 127 L~l~~~~l~ 135 (201)
|++++|++.
T Consensus 295 L~L~~Np~~ 303 (452)
T 3zyi_A 295 LHLHHNPWN 303 (452)
T ss_dssp EECCSSCEE
T ss_pred EEccCCCcC
Confidence 999999873
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=141.63 Aligned_cols=84 Identities=25% Similarity=0.405 Sum_probs=61.7
Q ss_pred CcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCCh-hhhCCCccceE
Q 028942 51 QLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSL 127 (201)
Q Consensus 51 ~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L 127 (201)
.+++|++|++++|.++.+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.|
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 334455555555555544 34556667777777777777755 3456788999999999999998875 46778999999
Q ss_pred EccCCcC
Q 028942 128 CLNNNNI 134 (201)
Q Consensus 128 ~l~~~~l 134 (201)
++++|++
T Consensus 285 ~L~~Np~ 291 (440)
T 3zyj_A 285 HLHHNPW 291 (440)
T ss_dssp ECCSSCE
T ss_pred EcCCCCc
Confidence 9999988
No 30
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=4.3e-19 Score=132.40 Aligned_cols=151 Identities=25% Similarity=0.380 Sum_probs=135.8
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 3467889999999999998864 8889999999999999998876 8899999999999999998754 88899999999
Q ss_pred eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942 83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
+++|.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 9999999874 577899999999999999988 567889999999999999988876 7899999999999999875
No 31
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=6.1e-19 Score=143.37 Aligned_cols=156 Identities=27% Similarity=0.400 Sum_probs=109.8
Q ss_pred ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL 81 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 81 (201)
++..|++|+.|++++|.+..+++ +..+++|+.|++++|.+..++ .+..+++|+.|++++|.+..+ +.+..+++|+.|
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESL 136 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEE
T ss_pred HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEE
Confidence 35566777777777777776655 666777777777777777654 566677777777777777766 346667777777
Q ss_pred EeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942 82 NVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
++++|.+..+ ..+..+++|+.|++++|.++.++. +..++.|+.|++++|.+..++. +..+++|+.|++.+|++...
T Consensus 137 ~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 137 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCSEEEECC
T ss_pred ECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH--HccCCCCCEEEccCCcCcCC
Confidence 7777777766 446677777777777777776655 6677777777777777766643 56777777777777776654
Q ss_pred hhc
Q 028942 162 QFQ 164 (201)
Q Consensus 162 ~~~ 164 (201)
...
T Consensus 213 p~~ 215 (605)
T 1m9s_A 213 PIN 215 (605)
T ss_dssp CCC
T ss_pred ccc
Confidence 433
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=6.3e-19 Score=141.20 Aligned_cols=157 Identities=24% Similarity=0.357 Sum_probs=138.1
Q ss_pred ccCCCccEEecCCCcCcc-cCccccCCCCCcEEeccCCCCccC---chhhhCcCCCCEEEecCCcCcc-cchh-hhcCCC
Q 028942 4 SKLINIQRLVLDDNHIER-LPVNLGKLQSLKVMTLDGNRITSL---PDELGQLVRLERLSILGNMLTC-LPET-IGSLRN 77 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~l~l~~~~l~~~---~~~~~~l~~L~~L~l~~~~~~~-~~~~-~~~~~~ 77 (201)
..+++|+.|++++|.+.. +|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.. +|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 578899999999999986 688889999999999999999854 5668889999999999999997 7764 677889
Q ss_pred CCEEEeeCCCCC-cCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942 78 LVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 78 L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n 156 (201)
|++|++++|.+. .++..+. ++|+.|++++|.++.+|..+..++.|+.|++++|.++.+|...+..+++|+.+++.+|
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 999999999986 3444332 7899999999999999988889999999999999999999877889999999999999
Q ss_pred CCChhh
Q 028942 157 PISMDQ 162 (201)
Q Consensus 157 ~l~~~~ 162 (201)
+++|++
T Consensus 479 ~~~c~c 484 (520)
T 2z7x_B 479 PWDCSC 484 (520)
T ss_dssp CBCCCH
T ss_pred CCcccC
Confidence 999875
No 33
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=8.3e-19 Score=128.15 Aligned_cols=153 Identities=25% Similarity=0.362 Sum_probs=135.0
Q ss_pred CCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEee
Q 028942 7 INIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVS 84 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~ 84 (201)
...+.++++++.++.+|..+. +.++.|++++|.+..++ ..+..+++|++|++++|.++.+++ .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356789999999999988765 68999999999999774 458889999999999999998755 47889999999999
Q ss_pred CCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942 85 NNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 85 ~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
+|.+..++. .+..+++|+.|++++|.++.++.. +..++.|+.|++++|.+..++...+..+++|+.|++++|.++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 999998864 568899999999999999988764 57899999999999999999987789999999999999998743
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=8e-19 Score=133.06 Aligned_cols=156 Identities=26% Similarity=0.416 Sum_probs=88.7
Q ss_pred ccccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccch-hhhcCCCCC
Q 028942 2 EISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLV 79 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 79 (201)
.|.++++|++|++++|.+..+ |..+..+++|+.|++++|.++.+|..+. +.|++|++++|.+..+++ .+..+++|+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence 356677777777777777765 5566777777777777776665543321 344455555444444432 234444555
Q ss_pred EEEeeCCCCCc---CcccccCC---------------------CCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcC
Q 028942 80 LLNVSNNKLKS---LPESIGSC---------------------YSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNI 134 (201)
Q Consensus 80 ~L~l~~~~~~~---~~~~~~~~---------------------~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l 134 (201)
+|++++|.+.. .+..+..+ ++|+.|++++|.++.+ +..+..+++|+.|++++|.+
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 55555554431 12233333 4455555555555544 34455666677777777766
Q ss_pred CccChhhhhcCccCCeEecccCCCC
Q 028942 135 GQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 135 ~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
..++...+..+++|+.|++++|.++
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSSCCS
T ss_pred ceeChhhccCCCCCCEEECCCCcCc
Confidence 6665545666667777777777665
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=3.6e-18 Score=130.23 Aligned_cols=153 Identities=24% Similarity=0.404 Sum_probs=77.3
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+..+++|+.|++++|.+..++. +..+++|+.+++++|.+..++. +..++.|+.+++++|.+..++. +..+++|++|+
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~ 227 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLK 227 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEE
Confidence 4455666666666666655544 5555666666666666555433 3444445555555544444332 34444444444
Q ss_pred eeCCCCCcCcc---------------------cccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhh
Q 028942 83 VSNNKLKSLPE---------------------SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANL 141 (201)
Q Consensus 83 l~~~~~~~~~~---------------------~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 141 (201)
+++|.+..++. .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+...+...
T Consensus 228 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 228 IGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred ccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhH
Confidence 44444444433 2344445555555555544442 2344455555555555554444444
Q ss_pred hhcCccCCeEecccCCCC
Q 028942 142 LKDCKALQNISLHNNPIS 159 (201)
Q Consensus 142 ~~~~~~L~~l~l~~n~l~ 159 (201)
+..+++|+.|++++|+++
T Consensus 307 l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp HHTCTTCSEEECCSSSCC
T ss_pred hhccccCCEEEccCCccc
Confidence 455555555555555544
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=136.84 Aligned_cols=158 Identities=22% Similarity=0.331 Sum_probs=86.6
Q ss_pred cccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccch--hhhcCCCC
Q 028942 3 ISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE--TIGSLRNL 78 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L 78 (201)
|.++++|+.|++++|.++.+ +..|..+++|+.|++++|.++.++.. +..+++|++|++++|.++.+|. .+..+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 44555555555555555544 23455555555555555555555443 4455555555555555555543 34455555
Q ss_pred CEEEeeCC-CCCcC-cccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942 79 VLLNVSNN-KLKSL-PESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 155 (201)
Q Consensus 79 ~~L~l~~~-~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~ 155 (201)
++|++++| .+..+ +..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++...+..+++|+.|++++
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence 55555555 24433 23445555555555555555543 34455556666666666666555555555566677777776
Q ss_pred CCCCh
Q 028942 156 NPISM 160 (201)
Q Consensus 156 n~l~~ 160 (201)
|.++.
T Consensus 232 n~l~~ 236 (353)
T 2z80_A 232 TDLDT 236 (353)
T ss_dssp CBCTT
T ss_pred Ccccc
Confidence 66654
No 37
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=6.6e-19 Score=135.19 Aligned_cols=156 Identities=25% Similarity=0.357 Sum_probs=133.0
Q ss_pred CCccEEecCCCcCcccCcc-cc-CCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEE
Q 028942 7 INIQRLVLDDNHIERLPVN-LG-KLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLN 82 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~~-~~-~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~ 82 (201)
..++.|++++|.++.++.. +. .+++|+.|++++|.++.++ ..+..+++|++|++++|.++.+++ .+..+.+|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3578899999999987554 55 8999999999999999875 458889999999999999998865 578889999999
Q ss_pred eeCCCCCcC-cccccCCCCCceEEcCCCcCCcCChhh----hCCCccceEEccCCcCCccChhhhhcCcc--CCeEeccc
Q 028942 83 VSNNKLKSL-PESIGSCYSLEELQANDNLIGELPASI----CNLIHLKSLCLNNNNIGQIPANLLKDCKA--LQNISLHN 155 (201)
Q Consensus 83 l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~--L~~l~l~~ 155 (201)
+++|.+..+ +..+..+++|+.|++++|.++.++... ..+++|+.|++++|.+..++...+..++. ++.|++.+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 999999877 457888999999999999999988754 56889999999999999999877788876 48899999
Q ss_pred CCCChhh
Q 028942 156 NPISMDQ 162 (201)
Q Consensus 156 n~l~~~~ 162 (201)
|++.|++
T Consensus 199 N~~~C~C 205 (361)
T 2xot_A 199 NPLECDC 205 (361)
T ss_dssp SCEECCH
T ss_pred CCccCCc
Confidence 9999875
No 38
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=1.5e-18 Score=128.47 Aligned_cols=153 Identities=28% Similarity=0.391 Sum_probs=126.5
Q ss_pred CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccc-hhhhcCCCCCEEEe
Q 028942 7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNV 83 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l 83 (201)
+++++|++++|.++.++. .|..+++|+.+++++|.+..++. .+..+++|++|++++|.+..++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 359999999999998865 78999999999999999997754 6788999999999999999875 56788999999999
Q ss_pred eCCCCCcCcc-cccCCCCCceEEcCCCcCCc--CChhhhCCCccceEEccCCcCCccChhhhhcCccCC----eEecccC
Q 028942 84 SNNKLKSLPE-SIGSCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ----NISLHNN 156 (201)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~----~l~l~~n 156 (201)
.+|.+..++. .+..+++|+.|++++|.++. +|..+..+++|+.|++++|.+..++...+..+..|+ .+++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 9999987755 67889999999999999986 678889999999999999999777654444444333 4455555
Q ss_pred CCC
Q 028942 157 PIS 159 (201)
Q Consensus 157 ~l~ 159 (201)
.+.
T Consensus 188 ~l~ 190 (276)
T 2z62_A 188 PMN 190 (276)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=1.4e-18 Score=134.54 Aligned_cols=84 Identities=29% Similarity=0.376 Sum_probs=37.9
Q ss_pred cccCCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccch-hhhcCCCCC
Q 028942 3 ISKLINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLV 79 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 79 (201)
|.++++|+.|++++|.+..++ ..+..+++|+.|++++|.++.+|.. +..+++|++|++++|.+..+++ .+..+++|+
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 444555555555555555442 2344455555555555555544433 2344444444444444443322 233333444
Q ss_pred EEEeeCC
Q 028942 80 LLNVSNN 86 (201)
Q Consensus 80 ~L~l~~~ 86 (201)
+|++++|
T Consensus 169 ~L~l~~n 175 (390)
T 3o6n_A 169 NLQLSSN 175 (390)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 4444333
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=5.5e-19 Score=148.49 Aligned_cols=156 Identities=22% Similarity=0.322 Sum_probs=107.9
Q ss_pred ccccCCCccEEecCCCcCcc------------------cCcccc--CCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEe
Q 028942 2 EISKLINIQRLVLDDNHIER------------------LPVNLG--KLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSI 60 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~------------------l~~~~~--~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l 60 (201)
+|.++++|+.|++++|.+.. +|..+. .+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 35677777777777777776 777765 7777777777777644 56767777777777777
Q ss_pred cCCc-Ccc--cchhhhcCC-------CCCEEEeeCCCCCcCcc--cccCCCCCceEEcCCCcCCcCChhhhCCCccceEE
Q 028942 61 LGNM-LTC--LPETIGSLR-------NLVLLNVSNNKLKSLPE--SIGSCYSLEELQANDNLIGELPASICNLIHLKSLC 128 (201)
Q Consensus 61 ~~~~-~~~--~~~~~~~~~-------~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~ 128 (201)
++|+ ++. +|..+..+. +|+.|++++|.+..+|. .+..+++|+.|++++|.++.+| .+..+++|+.|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEE
Confidence 7776 664 565555444 77777777777777766 6677777777777777777666 566666777777
Q ss_pred ccCCcCCccChhhhhcCcc-CCeEecccCCCC
Q 028942 129 LNNNNIGQIPANLLKDCKA-LQNISLHNNPIS 159 (201)
Q Consensus 129 l~~~~l~~~~~~~~~~~~~-L~~l~l~~n~l~ 159 (201)
+++|.+..+|.. +..+++ |+.|++++|.++
T Consensus 602 Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 602 LDYNQIEEIPED-FCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CCSSCCSCCCTT-SCEECTTCCEEECCSSCCC
T ss_pred CcCCccccchHH-HhhccccCCEEECcCCCCC
Confidence 777777666554 455555 666666666655
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.8e-18 Score=131.10 Aligned_cols=153 Identities=24% Similarity=0.378 Sum_probs=72.5
Q ss_pred CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCc---cCchhhhCcCCCCEEEecCCcCcccch------------
Q 028942 7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRIT---SLPDELGQLVRLERLSILGNMLTCLPE------------ 70 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~---~~~~~~~~l~~L~~L~l~~~~~~~~~~------------ 70 (201)
++|++|++++|.+..++. .+..+++|+.+++++|.+. ..+..+..+++|++|++++|.++.+|.
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~ 200 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECT
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECC
Confidence 345555555555554433 2444555555555555543 123334444455555555554444433
Q ss_pred ----------hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccCh
Q 028942 71 ----------TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA 139 (201)
Q Consensus 71 ----------~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 139 (201)
.+..+++|++|++++|.+..++. .+..+++|+.|++++|.++.+|..+..++.|+.|++++|.++.++.
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccCh
Confidence 34444455555555555443322 3444455555555555555554444445555555555555544443
Q ss_pred hhhhc------CccCCeEecccCCCC
Q 028942 140 NLLKD------CKALQNISLHNNPIS 159 (201)
Q Consensus 140 ~~~~~------~~~L~~l~l~~n~l~ 159 (201)
..+.. ...++.+++.+|++.
T Consensus 281 ~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 281 NDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred hhcCCcccccccccccceEeecCccc
Confidence 33321 134445555555543
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=2.2e-18 Score=133.52 Aligned_cols=164 Identities=21% Similarity=0.276 Sum_probs=92.7
Q ss_pred cccCCCccEEecCCCcCcccCcc-ccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccc-----------
Q 028942 3 ISKLINIQRLVLDDNHIERLPVN-LGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLP----------- 69 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~----------- 69 (201)
|.++++|++|++++|.+..+|.. |..+++|+.|++++|.+..++ ..+..+++|++|++++|.++.++
T Consensus 113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~ 192 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 192 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEE
T ss_pred hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceee
Confidence 45556666666666666655544 355566666666666555442 23444555555555555443211
Q ss_pred -------------------------------------------------hhhhcCCCCCEEEeeCCCCCcC-cccccCCC
Q 028942 70 -------------------------------------------------ETIGSLRNLVLLNVSNNKLKSL-PESIGSCY 99 (201)
Q Consensus 70 -------------------------------------------------~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~ 99 (201)
+.+..+++|++|++++|.+..+ |..+..++
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 1234456667777777766654 44556666
Q ss_pred CCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhhcccc
Q 028942 100 SLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQME 167 (201)
Q Consensus 100 ~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l~ 167 (201)
+|+.|++++|.++.++..+..+++|+.|++++|.+..++.. +..+++|+.|++.+|.+....+..++
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~ 339 (390)
T 3o6n_A 273 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHH 339 (390)
T ss_dssp SCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCTTC
T ss_pred cCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeCchhhc
Confidence 67777777776666655555566666666666666655544 34455666666666655544333333
No 43
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-17 Score=118.75 Aligned_cols=162 Identities=28% Similarity=0.433 Sum_probs=137.2
Q ss_pred cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEeeCCC
Q 028942 10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSNNK 87 (201)
Q Consensus 10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 87 (201)
+.++.+++.++.+|..+ .++++.+++++|.++.++.. +..+++|++|++++|.++.+++. +..+.+|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56788888888888665 35899999999999988654 67899999999999999988664 5788999999999999
Q ss_pred CCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhhcc
Q 028942 88 LKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQ 165 (201)
Q Consensus 88 ~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~ 165 (201)
+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..++...+..+++|+.|++.+|++.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~--- 164 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC--- 164 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT---
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC---
Confidence 998865 467899999999999999988764 678899999999999999998887899999999999999987643
Q ss_pred ccChhHHHHHHh
Q 028942 166 MEGFEEFEARRR 177 (201)
Q Consensus 166 l~~~~~l~~~~~ 177 (201)
+.+..|....+
T Consensus 165 -~~l~~L~~~~n 175 (208)
T 2o6s_A 165 -PGIRYLSEWIN 175 (208)
T ss_dssp -TTTHHHHHHHH
T ss_pred -CCHHHHHHHHH
Confidence 35566665544
No 44
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=3e-19 Score=129.53 Aligned_cols=152 Identities=21% Similarity=0.363 Sum_probs=133.4
Q ss_pred CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCC-CccCch-hhhCcCCCCEEEecC-CcCcccch-hhhcCCCCCEE
Q 028942 7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNR-ITSLPD-ELGQLVRLERLSILG-NMLTCLPE-TIGSLRNLVLL 81 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~-l~~~~~-~~~~l~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L 81 (201)
.+++.|++++|.++.++. .|..+++|+.+++++|. ++.++. .+..+++|++|++++ |.++.+++ .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999998866 78899999999999997 888765 678899999999998 99998864 56788999999
Q ss_pred EeeCCCCCcCcccccCCCCCc---eEEcCCC-cCCcCCh-hhhCCCccc-eEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942 82 NVSNNKLKSLPESIGSCYSLE---ELQANDN-LIGELPA-SICNLIHLK-SLCLNNNNIGQIPANLLKDCKALQNISLHN 155 (201)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~L~---~L~l~~n-~i~~~~~-~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~ 155 (201)
++++|.+..+|. +..+++|+ .+++++| .++.++. .+..++.|+ .|++++|.+..++..++.. ++|+.|++.+
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 999999998887 77888888 9999999 9998875 478899999 9999999999998877776 7899999999
Q ss_pred CC-CCh
Q 028942 156 NP-ISM 160 (201)
Q Consensus 156 n~-l~~ 160 (201)
|+ ++.
T Consensus 189 n~~l~~ 194 (239)
T 2xwt_C 189 NKYLTV 194 (239)
T ss_dssp CTTCCE
T ss_pred CCCccc
Confidence 95 764
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=3.1e-19 Score=146.31 Aligned_cols=156 Identities=22% Similarity=0.349 Sum_probs=103.1
Q ss_pred ccccCCCccEEecCCCcCcc------------------cCcccc--CCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEe
Q 028942 2 EISKLINIQRLVLDDNHIER------------------LPVNLG--KLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSI 60 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~------------------l~~~~~--~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l 60 (201)
+|.++++|+.|++++|.+.. +|..+. .+++|+.|++++|.+. .+|..+..+++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 35667777777777777776 777766 7777777777777655 55666777777777777
Q ss_pred cCCc-Ccc--cchhhhcC------CCCCEEEeeCCCCCcCcc--cccCCCCCceEEcCCCcCC-cCChhhhCCCccceEE
Q 028942 61 LGNM-LTC--LPETIGSL------RNLVLLNVSNNKLKSLPE--SIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLC 128 (201)
Q Consensus 61 ~~~~-~~~--~~~~~~~~------~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~ 128 (201)
++|. ++. +|..+..+ ++|++|++++|.+..+|. .+..+++|+.|++++|.++ .+| .+..+++|+.|+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 7776 664 56655554 677777777777776666 6667777777777777666 565 555555666666
Q ss_pred ccCCcCCccChhhhhcCcc-CCeEecccCCCC
Q 028942 129 LNNNNIGQIPANLLKDCKA-LQNISLHNNPIS 159 (201)
Q Consensus 129 l~~~~l~~~~~~~~~~~~~-L~~l~l~~n~l~ 159 (201)
+++|.+..+|.. +..+++ |+.|++++|.++
T Consensus 360 L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 360 LAYNQITEIPAN-FCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp CCSSEEEECCTT-SEEECTTCCEEECCSSCCS
T ss_pred CCCCccccccHh-hhhhcccCcEEEccCCcCc
Confidence 666665555544 344555 555555555554
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2.1e-18 Score=130.16 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=121.1
Q ss_pred CCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccc-hhh-hcCCCCCEEEeeCCCCCcCcccccCCCCCceEE
Q 028942 29 LQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ 105 (201)
Q Consensus 29 l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 105 (201)
+++|+.+++++|.++.++. .+..+++|++|++++|.++.++ ..+ ..+++|++|++++|.+..++.. ..+++|+.|+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~ 197 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLD 197 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEE
Confidence 5678888888888887644 5677899999999999998863 444 4678999999999999887543 3589999999
Q ss_pred cCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhh----ccccChhHHHHHHhhccc
Q 028942 106 ANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF----QQMEGFEEFEARRRKKFD 181 (201)
Q Consensus 106 l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~----~~l~~~~~l~~~~~~~~~ 181 (201)
+++|.++.++..+..+++|+.|++++|.+..++.. +..+++|+.+++++|++.+... ..+..+..+.......+.
T Consensus 198 Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCCcCCcchhhhcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 99999999988888999999999999999988876 6888999999999999995433 233444555555444444
Q ss_pred c
Q 028942 182 K 182 (201)
Q Consensus 182 ~ 182 (201)
+
T Consensus 277 ~ 277 (317)
T 3o53_A 277 G 277 (317)
T ss_dssp S
T ss_pred C
Confidence 3
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=2.3e-18 Score=138.69 Aligned_cols=158 Identities=23% Similarity=0.292 Sum_probs=110.9
Q ss_pred cCCCccEEecCCCcCcc-cC---ccccCCCCCcEEeccCCCCccCc---hhhhCcCCCCEEEecCCcCcccchhhhcCCC
Q 028942 5 KLINIQRLVLDDNHIER-LP---VNLGKLQSLKVMTLDGNRITSLP---DELGQLVRLERLSILGNMLTCLPETIGSLRN 77 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~~-l~---~~~~~l~~L~~l~l~~~~l~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 77 (201)
++++|+.|++++|.+.. +| ..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.+|..+..+++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 46666677777666653 22 22455666666666666666553 2355566666666666666666655555556
Q ss_pred CCEEEeeCCCCCcCccc------------------ccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccCh
Q 028942 78 LVLLNVSNNKLKSLPES------------------IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA 139 (201)
Q Consensus 78 L~~L~l~~~~~~~~~~~------------------~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 139 (201)
|++|++++|.+..++.. ...+++|+.|++++|.++.+|. ...++.|+.|++++|.+..++.
T Consensus 412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCH
Confidence 66666666655443321 1357889999999999998886 4568899999999999988888
Q ss_pred hhhhcCccCCeEecccCCCChhhh
Q 028942 140 NLLKDCKALQNISLHNNPISMDQF 163 (201)
Q Consensus 140 ~~~~~~~~L~~l~l~~n~l~~~~~ 163 (201)
..+..+++|+.+++++|++.|+..
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TGGGGCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcCcccCEEEecCCCccCCCc
Confidence 778899999999999999987753
No 48
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=2.9e-18 Score=143.34 Aligned_cols=83 Identities=28% Similarity=0.535 Sum_probs=37.6
Q ss_pred cCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCc-ccchhhhcCCCCCEE
Q 028942 5 KLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLL 81 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L 81 (201)
.+++|+.|++++|.+. .+|..+..+++|+.+++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 3444444444444444 23444444444444444444444 33444444444444444444444 234444444444444
Q ss_pred EeeCCC
Q 028942 82 NVSNNK 87 (201)
Q Consensus 82 ~l~~~~ 87 (201)
++++|.
T Consensus 544 ~Ls~N~ 549 (768)
T 3rgz_A 544 DLNTNL 549 (768)
T ss_dssp ECCSSE
T ss_pred ECCCCc
Confidence 444443
No 49
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=131.89 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=69.2
Q ss_pred CCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCcc---Cchh--hhCcCCCCEEEecCCcCcccchh----hhcC
Q 028942 6 LINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITS---LPDE--LGQLVRLERLSILGNMLTCLPET----IGSL 75 (201)
Q Consensus 6 l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~---~~~~--~~~l~~L~~L~l~~~~~~~~~~~----~~~~ 75 (201)
+++|++|++++|.+..++ ..+..+++|+.|++++|.+.. ++.. +..+++|++|++++|.++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 444555555555444332 334445555555555554331 1111 13344455555555555433221 2344
Q ss_pred CCCCEEEeeCCCCCcC-cccccCC---CCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeE
Q 028942 76 RNLVLLNVSNNKLKSL-PESIGSC---YSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 151 (201)
Q Consensus 76 ~~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l 151 (201)
++|++|++++|.+... |..+..+ ++|+.|++++|.++.+|..+. ++|+.|++++|.+..++. +..+++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch--hhhCCCccEE
Confidence 5555555555555443 3333333 355555555555555544332 455555555555544432 3444555555
Q ss_pred ecccCCCC
Q 028942 152 SLHNNPIS 159 (201)
Q Consensus 152 ~l~~n~l~ 159 (201)
++++|+++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 55555554
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=6.9e-18 Score=128.63 Aligned_cols=151 Identities=24% Similarity=0.351 Sum_probs=124.1
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+.++++|+.|++++|......+.+..+++|+.+++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.++
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 205 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFT 205 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEE
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceee
Confidence 678899999999999666555558899999999999999998765 7889999999999999998866 78899999999
Q ss_pred eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
+.+|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++
T Consensus 206 l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 206 AYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp CCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred cccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChh--HhcCCCcCEEEccCCccC
Confidence 99999987755 7788899999999998887765 6677777777777777766532 566667777777766665
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=2.7e-18 Score=138.88 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=137.6
Q ss_pred ccCCCccEEecCCCcCcc-cCccccCCCCCcEEeccCCCCccCc---hhhhCcCCCCEEEecCCcCcc-cchh-hhcCCC
Q 028942 4 SKLINIQRLVLDDNHIER-LPVNLGKLQSLKVMTLDGNRITSLP---DELGQLVRLERLSILGNMLTC-LPET-IGSLRN 77 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~l~l~~~~l~~~~---~~~~~l~~L~~L~l~~~~~~~-~~~~-~~~~~~ 77 (201)
..+++|++|++++|.+.. +|..+..+++|+.+++++|.++.++ ..+..+++|++|++++|.+.. +|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 578899999999999986 6888999999999999999999654 457889999999999999987 7654 677899
Q ss_pred CCEEEeeCCCCCc-CcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942 78 LVLLNVSNNKLKS-LPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 78 L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n 156 (201)
|++|++++|.+.. ++..+. ++|+.|++++|.++.+|..+..++.|+.|++++|.+..+|...+..+++|+.+++.+|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 9999999999863 333332 6899999999999999988789999999999999999999877889999999999999
Q ss_pred CCChhhh
Q 028942 157 PISMDQF 163 (201)
Q Consensus 157 ~l~~~~~ 163 (201)
++.|++.
T Consensus 508 ~~~c~c~ 514 (562)
T 3a79_B 508 PWDCTCP 514 (562)
T ss_dssp CBCCCHH
T ss_pred CcCCCcc
Confidence 9998753
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=7.9e-19 Score=141.92 Aligned_cols=160 Identities=20% Similarity=0.274 Sum_probs=128.8
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCc--hhhhCcCCCCEEEecCCcCccc-chhhhcCCCCC
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP--DELGQLVRLERLSILGNMLTCL-PETIGSLRNLV 79 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~ 79 (201)
+.++++|++|++++|.+..++..+..+++|+.+++++|.+...+ ..+..+++|++|++++|.+... +..+..+++|+
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 34566777777777777766666777778888888877776553 2466788888888888887764 55677788999
Q ss_pred EEEeeCCCCC--cCcccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942 80 LLNVSNNKLK--SLPESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 80 ~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n 156 (201)
+|++++|.+. .+|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+..++...+..+++|+.+++.+|
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 9999999886 4677888899999999999999876 667888999999999999998888877889999999999999
Q ss_pred CCChhh
Q 028942 157 PISMDQ 162 (201)
Q Consensus 157 ~l~~~~ 162 (201)
++.++.
T Consensus 529 ~~~~~~ 534 (570)
T 2z63_A 529 PWDCSC 534 (570)
T ss_dssp CBCCCT
T ss_pred cccCCC
Confidence 998764
No 53
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=3.5e-18 Score=142.81 Aligned_cols=159 Identities=28% Similarity=0.467 Sum_probs=139.3
Q ss_pred ccccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCc-ccchhh------
Q 028942 2 EISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETI------ 72 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~------ 72 (201)
.+.++++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|..+
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 4678999999999999998 67889999999999999999998 67889999999999999999876 344332
Q ss_pred ----------------------------------------------------------------hcCCCCCEEEeeCCCC
Q 028942 73 ----------------------------------------------------------------GSLRNLVLLNVSNNKL 88 (201)
Q Consensus 73 ----------------------------------------------------------------~~~~~L~~L~l~~~~~ 88 (201)
..+.+|++|++++|.+
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 2246789999999999
Q ss_pred C-cCcccccCCCCCceEEcCCCcCC-cCChhhhCCCccceEEccCCcCC-ccChhhhhcCccCCeEecccCCCChh
Q 028942 89 K-SLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 89 ~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
. .+|..+..++.|+.|++++|.++ .+|..++.++.|+.|++++|.+. .+|. .+..++.|+.|++++|+++..
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-GGGGCCCCSEEECCSSEEEEE
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECcCCccccc
Confidence 8 67889999999999999999998 88999999999999999999995 5555 478999999999999998754
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=1.7e-18 Score=141.00 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=113.0
Q ss_pred cccCCCccEEecCCCcCcccC--ccccCCCCCcEEeccCCCCcc-CchhhhCcCCCCEEEecCCcCcc--cchhhhcCCC
Q 028942 3 ISKLINIQRLVLDDNHIERLP--VNLGKLQSLKVMTLDGNRITS-LPDELGQLVRLERLSILGNMLTC--LPETIGSLRN 77 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~--~~~~~l~~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~ 77 (201)
|.++++|+.|++++|.+..++ ..+..+++|+.+++++|.+.. .|..+..+++|++|++++|.+.. +|..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 455666666666666666543 356667777777777777664 34556677777777777777765 4566677778
Q ss_pred CCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCc-cCCeEecc
Q 028942 78 LVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCK-ALQNISLH 154 (201)
Q Consensus 78 L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~l~l~ 154 (201)
|++|++++|.+..+ |..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+..+|.. +..++ +|+.+++.
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLT 553 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECC
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEcc
Confidence 88888888877755 44567778888888888887765 56677778888888888888777766 55665 58888888
Q ss_pred cCCCChhh
Q 028942 155 NNPISMDQ 162 (201)
Q Consensus 155 ~n~l~~~~ 162 (201)
+|++.|+.
T Consensus 554 ~N~~~c~c 561 (606)
T 3vq2_A 554 NNSVACIC 561 (606)
T ss_dssp SCCCCCSS
T ss_pred CCCcccCC
Confidence 88887654
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=1.2e-18 Score=132.32 Aligned_cols=155 Identities=25% Similarity=0.392 Sum_probs=95.8
Q ss_pred cccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCE
Q 028942 3 ISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVL 80 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~ 80 (201)
|.++++|++|++++|.+..+ |..+..+++|+.|++++|.++.+|..+. ++|++|++++|.+..+++ .+..+++|++
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence 55566666666666666654 4456666666666666666665554432 556666666666665543 3556667777
Q ss_pred EEeeCCCCCc--C-cccccCC--------------------CCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCc
Q 028942 81 LNVSNNKLKS--L-PESIGSC--------------------YSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQ 136 (201)
Q Consensus 81 L~l~~~~~~~--~-~~~~~~~--------------------~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~ 136 (201)
|++++|.+.. + +..+..+ ++|+.|++++|.++.++ ..+..+++|+.|++++|.+..
T Consensus 152 L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp EECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred EECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 7777666542 1 2222222 34555555555555444 345667778888888888877
Q ss_pred cChhhhhcCccCCeEecccCCCC
Q 028942 137 IPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 137 ~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
++...+..+++|+.|++++|.++
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC
T ss_pred CChhHhhCCCCCCEEECCCCcCe
Confidence 77666777888888888888776
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=1.4e-18 Score=130.84 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=108.1
Q ss_pred ccCCCccEEecCCCcCcccCccccCC-----CCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcc---cchhh--
Q 028942 4 SKLINIQRLVLDDNHIERLPVNLGKL-----QSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTC---LPETI-- 72 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~l~~~~~~l-----~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~---~~~~~-- 72 (201)
.++++|++|++++|.+..+|..+..+ ++|+.|++++|.+..++ ..+..+++|++|++++|.+.. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 67788888888888888776666665 78888888888887664 566777888888888887653 23333
Q ss_pred hcCCCCCEEEeeCCCCCcCc---c-cccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEccCCcCCccChhhhhcCc
Q 028942 73 GSLRNLVLLNVSNNKLKSLP---E-SIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPANLLKDCK 146 (201)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~---~-~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 146 (201)
..+++|++|++++|.+..++ . .+..+++|+.|++++|.++..+ ..+..+++|+.|++++|.++.+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---C
Confidence 56777888888888777432 2 2345677888888887777543 234446677788888777777766533 6
Q ss_pred cCCeEecccCCCChh
Q 028942 147 ALQNISLHNNPISMD 161 (201)
Q Consensus 147 ~L~~l~l~~n~l~~~ 161 (201)
+|+.|++++|.++..
T Consensus 275 ~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN 289 (312)
T ss_dssp EEEEEECCSSCCCSC
T ss_pred CceEEECCCCCCCCC
Confidence 777777777777643
No 57
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=3e-18 Score=139.30 Aligned_cols=151 Identities=25% Similarity=0.389 Sum_probs=136.0
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+..+..|+.|++++|.+..++ .+..+++|+.|++++|.+..++. +..++.|+.|++++|.+..++ .+..+++|+.|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 346788999999999999887 58889999999999999998866 889999999999999999875 678899999999
Q ss_pred eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942 83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
+++|.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+..++. +..+++|+.|++++|.|+.
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 9999999874 478899999999999999988 568899999999999999988766 7899999999999999875
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=3.9e-18 Score=134.46 Aligned_cols=134 Identities=28% Similarity=0.372 Sum_probs=119.0
Q ss_pred CCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEc
Q 028942 30 QSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQA 106 (201)
Q Consensus 30 ~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l 106 (201)
++|+.+++++|.+..+ |..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 5789999999988855 56688899999999999999987 45788899999999999999877 557788999999999
Q ss_pred CCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhh
Q 028942 107 NDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF 163 (201)
Q Consensus 107 ~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~ 163 (201)
++|.++.+ +..+..+++|++|++++|.++.++..++..+++|+.|++++|+++++..
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999977 5678889999999999999999998888999999999999999998753
No 59
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=1.1e-18 Score=142.94 Aligned_cols=153 Identities=25% Similarity=0.381 Sum_probs=92.5
Q ss_pred CCCccEEecCCCcCcccCc--cccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCCcCcccchhhhcCCC-CCEE
Q 028942 6 LINIQRLVLDDNHIERLPV--NLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGNMLTCLPETIGSLRN-LVLL 81 (201)
Q Consensus 6 l~~L~~L~l~~~~l~~l~~--~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L 81 (201)
+++|+.|++++|.++.+|. .+..+++|+.|++++|.+. .+| .+..+++|++|++++|.++.+|..+..+++ |++|
T Consensus 304 l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382 (636)
T ss_dssp GGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEE
T ss_pred CCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEE
Confidence 4666666666666666666 6666666666666666666 565 555666666666666666666666666666 7777
Q ss_pred EeeCCCCCcCcccccCCC--CCceEEcCCCcCCc-CChhhh-------CCCccceEEccCCcCCccChhhhhcCccCCeE
Q 028942 82 NVSNNKLKSLPESIGSCY--SLEELQANDNLIGE-LPASIC-------NLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 151 (201)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~--~L~~L~l~~n~i~~-~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l 151 (201)
++++|.+..+|..+.... +|+.|++++|.++. +|..+. .+++|+.|++++|.+..++..++..+++|+.|
T Consensus 383 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp ECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred EccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence 777776666655444332 55566665555542 222233 34456666666666666665555556666666
Q ss_pred ecccCCCC
Q 028942 152 SLHNNPIS 159 (201)
Q Consensus 152 ~l~~n~l~ 159 (201)
++++|.++
T Consensus 463 ~Ls~N~l~ 470 (636)
T 4eco_A 463 NLMGNMLT 470 (636)
T ss_dssp ECCSSCCS
T ss_pred ECCCCCCC
Confidence 66666554
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=7.6e-19 Score=143.10 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=96.7
Q ss_pred cCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCc--hhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEE
Q 028942 5 KLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP--DELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLL 81 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L 81 (201)
++++|+.|++++|.+..+|..+..+++|+.+++++|.+...+ ..+..+++|++|++++|.+... |..+..+++|++|
T Consensus 374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 445555555555555555555555566666666666555442 2455566666666666666553 4455666667777
Q ss_pred EeeCCCCCc--CcccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCC
Q 028942 82 NVSNNKLKS--LPESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158 (201)
Q Consensus 82 ~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l 158 (201)
++++|.+.. +|..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..+....+..+++|+.|++++|.+
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 777766653 455566677777777777777654 34466677777777777777666555566777777777777777
Q ss_pred C
Q 028942 159 S 159 (201)
Q Consensus 159 ~ 159 (201)
+
T Consensus 534 ~ 534 (606)
T 3vq2_A 534 E 534 (606)
T ss_dssp C
T ss_pred c
Confidence 6
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.9e-18 Score=139.68 Aligned_cols=64 Identities=25% Similarity=0.238 Sum_probs=30.4
Q ss_pred ccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 95 IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 95 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
+..+++|+.|++++|.++.++..+..+++|+.|++++|.+..+|.. +..+++|+.|++.+|.+.
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCC
T ss_pred hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcc-cccCCCCCEEECCCCCCC
Confidence 3444444444444444444443333445555555555555544443 234445555555555444
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=3.6e-18 Score=139.06 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=93.3
Q ss_pred hCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEE
Q 028942 50 GQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLC 128 (201)
Q Consensus 50 ~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~ 128 (201)
..++.|+.|++++|.+..+ |..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.+|..+..++.|+.|+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEE
Confidence 3455666666666666655 556778888999999999888887777789999999999999999998888899999999
Q ss_pred ccCCcCCccChhhhhcCccCCeEecccCCCChhhhc
Q 028942 129 LNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQ 164 (201)
Q Consensus 129 l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 164 (201)
+++|.+..++ +..+++|+.|++++|++.|+...
T Consensus 331 L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 331 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred CCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH
Confidence 9999998876 46788999999999999876543
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=131.51 Aligned_cols=154 Identities=22% Similarity=0.338 Sum_probs=132.5
Q ss_pred CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEe
Q 028942 7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNV 83 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 83 (201)
++|++|++++|.++.++. .+..+++|+.|++++|.++.+ +..+..+++|++|++++|.++.++.. +..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 478999999999998866 788999999999999999877 45688899999999999999988766 788899999999
Q ss_pred eCCCCCcCcc--cccCCCCCceEEcCCC-cCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 84 SNNKLKSLPE--SIGSCYSLEELQANDN-LIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 84 ~~~~~~~~~~--~~~~~~~L~~L~l~~n-~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
++|.+..++. .+..+++|+.|++++| .++.++ ..+..++.|+.|++++|.+..+....+..+++|++|++.+|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999998876 6788999999999998 577664 46788899999999999998776666788999999999999876
Q ss_pred h
Q 028942 160 M 160 (201)
Q Consensus 160 ~ 160 (201)
.
T Consensus 212 ~ 212 (353)
T 2z80_A 212 L 212 (353)
T ss_dssp T
T ss_pred c
Confidence 3
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=3.6e-18 Score=135.47 Aligned_cols=154 Identities=25% Similarity=0.378 Sum_probs=101.8
Q ss_pred CCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEe
Q 028942 7 INIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNV 83 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 83 (201)
..++.|++++|.+..+ +..|..+++|+.|++++|.+..+ |..+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 3566777777777765 44566777777777777776655 55566677777777777777766543 456677777777
Q ss_pred eCCCCCcC-cccccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942 84 SNNKLKSL-PESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
++|.+..+ +..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+..++...+..+++|+.|++.+|.+..
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 77766654 345566677777777777666543 345666677777777777766666666666777777776666653
No 65
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.77 E-value=6e-18 Score=116.24 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=75.6
Q ss_pred CCCcEEeccCCCCc--cCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCc-CcccccCCCCCceEEc
Q 028942 30 QSLKVMTLDGNRIT--SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQA 106 (201)
Q Consensus 30 ~~L~~l~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l 106 (201)
++++.+++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45556666666555 5555455555666666666665555 444555566666666666554 4444444566666666
Q ss_pred CCCcCCcCC--hhhhCCCccceEEccCCcCCccCh---hhhhcCccCCeEecccCCCC
Q 028942 107 NDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 107 ~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~l~l~~n~l~ 159 (201)
++|.++.++ ..+..++.|+.|++++|.+..++. ..+..+++|+.|++.+|.+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666554 445556666666666666655554 34566666666666666554
No 66
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=1.1e-18 Score=128.33 Aligned_cols=149 Identities=25% Similarity=0.321 Sum_probs=131.3
Q ss_pred cCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEee
Q 028942 5 KLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVS 84 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 84 (201)
++.++..+.++++.++.++ .+..+++|+.+++++|.++.++ .+..+++|++|++++|.++.+++ +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3455666788888888877 6788999999999999999887 68889999999999999999877 8899999999999
Q ss_pred CCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942 85 NNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
+|.+..++.... ++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++..
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred CCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence 999998876433 89999999999999886 4788999999999999998886 378899999999999999854
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=1.1e-17 Score=138.07 Aligned_cols=159 Identities=26% Similarity=0.397 Sum_probs=116.7
Q ss_pred ccCCCccEEecCCCcCc---ccCccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch---------
Q 028942 4 SKLINIQRLVLDDNHIE---RLPVNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE--------- 70 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~---~l~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--------- 70 (201)
..+++|+.|++++|.+. .+|..+..+++|+.+++++|.++.++. .+..+++|++|++++|.++.++.
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 530 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCC
T ss_pred hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcch
Confidence 33444555555554443 345667777788888888888776654 36677888888888887776422
Q ss_pred hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhh-cCcc
Q 028942 71 TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLK-DCKA 147 (201)
Q Consensus 71 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~ 147 (201)
.+..+++|++|++++|.+..+|. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.++.++...+. .+++
T Consensus 531 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 610 (680)
T 1ziw_A 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT
T ss_pred hhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccc
Confidence 25677788888888888887765 467788888888888888877754 56778888888888888888877666 6788
Q ss_pred CCeEecccCCCChhh
Q 028942 148 LQNISLHNNPISMDQ 162 (201)
Q Consensus 148 L~~l~l~~n~l~~~~ 162 (201)
|+.+++.+|++.|++
T Consensus 611 L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 611 LTELDMRFNPFDCTC 625 (680)
T ss_dssp CSEEECTTCCCCBCC
T ss_pred cCEEEccCCCcccCC
Confidence 888999999888765
No 68
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=6.4e-18 Score=134.07 Aligned_cols=156 Identities=25% Similarity=0.356 Sum_probs=130.5
Q ss_pred ccccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCccc-chhhhcCCCC
Q 028942 2 EISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCL-PETIGSLRNL 78 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L 78 (201)
.|.++++|++|++++|.+..+ |..|..+++|+.|++++|.++.+|.. +..+++|++|++++|.+..+ +..+..+++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 578899999999999999976 77899999999999999999988764 67899999999999999876 5567888999
Q ss_pred CEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942 79 VLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 79 ~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n 156 (201)
++|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..++...+..+++|+.|++.+|
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 9999999998866 4567888999999999999988875 4778888999999988887776655667776776666665
Q ss_pred C
Q 028942 157 P 157 (201)
Q Consensus 157 ~ 157 (201)
.
T Consensus 211 ~ 211 (477)
T 2id5_A 211 P 211 (477)
T ss_dssp T
T ss_pred c
Confidence 3
No 69
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=5.6e-18 Score=142.39 Aligned_cols=154 Identities=25% Similarity=0.345 Sum_probs=83.4
Q ss_pred cCCCccEEecCCCcCcccCc--cccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCC-CCEE
Q 028942 5 KLINIQRLVLDDNHIERLPV--NLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRN-LVLL 81 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~~l~~--~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L 81 (201)
.+++|+.|++++|.+..+|. .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+|..+..+++ |+.|
T Consensus 546 ~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred ccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence 44466666666666666666 6666666666666666666665 556666666666666666666666666666 6666
Q ss_pred EeeCCCCCcCcccccCCCC--CceEEcCCCcCCcCCh----hhh--CCCccceEEccCCcCCccChhhhhcCccCCeEec
Q 028942 82 NVSNNKLKSLPESIGSCYS--LEELQANDNLIGELPA----SIC--NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 153 (201)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~--L~~L~l~~n~i~~~~~----~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l 153 (201)
++++|.+..+|..+..... |+.|++++|.++..++ .+. ..++|+.|++++|.+..+|..++..+++|+.|++
T Consensus 625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704 (876)
T ss_dssp ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence 6666666655544333322 4444444444432110 111 1124444455555444444444444445555555
Q ss_pred ccCCCC
Q 028942 154 HNNPIS 159 (201)
Q Consensus 154 ~~n~l~ 159 (201)
++|.++
T Consensus 705 s~N~L~ 710 (876)
T 4ecn_A 705 SNNLMT 710 (876)
T ss_dssp CSCCCS
T ss_pred CCCcCC
Confidence 544443
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=3.3e-18 Score=129.82 Aligned_cols=162 Identities=30% Similarity=0.445 Sum_probs=126.2
Q ss_pred ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcc--c-chhhhcC--
Q 028942 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTC--L-PETIGSL-- 75 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~--~-~~~~~~~-- 75 (201)
.|.++++|++|++++|.+..+|..+. ++|+.+++++|.++.++. .+..+++|++|++++|.++. + +..+..+
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L 174 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC
T ss_pred HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCcc
Confidence 46778899999999998888776654 688888888888887754 36677888888888777652 1 2222221
Q ss_pred ------------------CCCCEEEeeCCCCCcCc-ccccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCC
Q 028942 76 ------------------RNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIG 135 (201)
Q Consensus 76 ------------------~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~ 135 (201)
++|++|++++|.+..++ ..+..+++|+.|++++|.++.++. .+..++.|+.|++++|.+.
T Consensus 175 ~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp SCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 46777777777777664 567888999999999999998765 6888999999999999999
Q ss_pred ccChhhhhcCccCCeEecccCCCChhhhccc
Q 028942 136 QIPANLLKDCKALQNISLHNNPISMDQFQQM 166 (201)
Q Consensus 136 ~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l 166 (201)
.+|.. +..+++|+.|++++|.++......+
T Consensus 255 ~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 255 RVPAG-LPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp BCCTT-GGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred ecChh-hhcCccCCEEECCCCCCCccChhHc
Confidence 99876 6889999999999999986544433
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=5.4e-18 Score=134.92 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=94.8
Q ss_pred CcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCccc-chhhh-cCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCC
Q 028942 32 LKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIG-SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQAND 108 (201)
Q Consensus 32 L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 108 (201)
|+.|++++|.++.+ |..+..+++|+.|++++|.++.+ |..+. .+++|++|++++|.+..++. ...+++|+.|++++
T Consensus 122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSS 200 (487)
T ss_dssp CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCS
T ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCC
Confidence 33333333433333 22445566666777777666653 33443 56677777777777766543 23477888888888
Q ss_pred CcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhhc-cccChhHHH
Q 028942 109 NLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQ-QMEGFEEFE 173 (201)
Q Consensus 109 n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~l~~~~~l~ 173 (201)
|.++.++..+..++.|+.|++++|.+..+|.. +..+++|+.+++.+|++.|.... .+..++.+.
T Consensus 201 N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred CCCCCCCHhHcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 88888887788888999999999999888775 57788999999999999855442 233344443
No 72
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.1e-17 Score=134.81 Aligned_cols=148 Identities=34% Similarity=0.435 Sum_probs=110.7
Q ss_pred CCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeC
Q 028942 6 LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSN 85 (201)
Q Consensus 6 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 85 (201)
+++|+.|++++|.++.+|. +.. +|+.|++++|.++.+|. .+++|+.|++++|.++.+|. .+++|++|++++
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC
Confidence 4566666666666666665 433 67777777777776665 56778888888888777765 457888888888
Q ss_pred CCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCcc-------ceEEccCCcCCccChhhhhcCccCCeEecccCCC
Q 028942 86 NKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHL-------KSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 158 (201)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l 158 (201)
|.+..+|. +. ++|+.|++++|.++.+|. +.. +| +.|++++|.++.+|..++. +++|+.|++++|++
T Consensus 170 N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 170 NQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPL 242 (571)
T ss_dssp SCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSC
T ss_pred CCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcC
Confidence 88888877 44 889999999999998887 443 67 9999999999999987654 99999999999999
Q ss_pred ChhhhccccCh
Q 028942 159 SMDQFQQMEGF 169 (201)
Q Consensus 159 ~~~~~~~l~~~ 169 (201)
+......+..+
T Consensus 243 ~~~~p~~l~~l 253 (571)
T 3cvr_A 243 SSRIRESLSQQ 253 (571)
T ss_dssp CHHHHHHHHHH
T ss_pred CCcCHHHHHHh
Confidence 97665544443
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=1.1e-17 Score=137.89 Aligned_cols=159 Identities=25% Similarity=0.322 Sum_probs=110.1
Q ss_pred cccCCCccEEecCCCcCc-ccC-ccccCCCCCcEEeccCCCCc---------------------------cCchhhhCcC
Q 028942 3 ISKLINIQRLVLDDNHIE-RLP-VNLGKLQSLKVMTLDGNRIT---------------------------SLPDELGQLV 53 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~-~l~-~~~~~l~~L~~l~l~~~~l~---------------------------~~~~~~~~l~ 53 (201)
|.++++|+.|++++|.+. .++ ..+..+++|+.+++++|.+. .+|..+..++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 455666666666666665 233 34555555555555555443 2345566677
Q ss_pred CCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCCCcCcc---------cccCCCCCceEEcCCCcCCcCCh-hhhCCC
Q 028942 54 RLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE---------SIGSCYSLEELQANDNLIGELPA-SICNLI 122 (201)
Q Consensus 54 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~---------~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~ 122 (201)
+|+.|++++|.++.+++ .+..+.+|++|++++|.+..++. .+..+++|+.|++++|.++.+|. .+..++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 77777777777777654 35677778888888887765421 25667788888888888887775 467788
Q ss_pred ccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942 123 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 123 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
.|+.|++++|.++.++..++..+++|+.|++++|.++..
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 888888888888888877778888888888888887743
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=1.6e-17 Score=135.55 Aligned_cols=152 Identities=28% Similarity=0.384 Sum_probs=119.9
Q ss_pred CccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEee
Q 028942 8 NIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVS 84 (201)
Q Consensus 8 ~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~ 84 (201)
+++.|++++|.|+.++ ..|..+++|+.|++++|.++.+++ ++..+++|++|++++|+++.+|+ .|..+.+|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 6788999999988875 468888999999999998887754 57788899999999998888865 46788899999999
Q ss_pred CCCCCcCcc-cccCCCCCceEEcCCCcCCc--CChhhhCCCccceEEccCCcCCccChhhhhcCccC----CeEecccCC
Q 028942 85 NNKLKSLPE-SIGSCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL----QNISLHNNP 157 (201)
Q Consensus 85 ~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L----~~l~l~~n~ 157 (201)
+|.+..++. .+..+++|+.|++++|.++. +|..+..++.|++|++++|.+..++...+..+..+ ..+++..|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 998888765 47888889999999998874 45677788889999999998877765444444333 356677777
Q ss_pred CC
Q 028942 158 IS 159 (201)
Q Consensus 158 l~ 159 (201)
+.
T Consensus 213 l~ 214 (635)
T 4g8a_A 213 MN 214 (635)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 75
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.75 E-value=1.7e-17 Score=135.16 Aligned_cols=157 Identities=26% Similarity=0.319 Sum_probs=91.0
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCc-ccch-hhhcCCCCC
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLT-CLPE-TIGSLRNLV 79 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~~~~~L~ 79 (201)
|.++++|++|++++|.++.+|..+..+++|+.+++++|.+..+ |..+..+++|++|++++|.+. .++. .+..+++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 5667788888888888887877777788888888888877755 445566666666666666554 3332 245555566
Q ss_pred EEEeeCCCCCcC---cccccCCCCCceEEcCCCcCCcC-Chhh-------------------------hCCCccceEEcc
Q 028942 80 LLNVSNNKLKSL---PESIGSCYSLEELQANDNLIGEL-PASI-------------------------CNLIHLKSLCLN 130 (201)
Q Consensus 80 ~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~n~i~~~-~~~~-------------------------~~~~~L~~L~l~ 130 (201)
+|++++|.+..+ +..+..+++|+.|++++|.++.+ +..+ ..++.|+.|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 666655555433 23344455555555555544432 2233 344444555555
Q ss_pred CCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 131 NNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 131 ~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
+|.+...+...+..+++|++|++++|.+.
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 55444443333445555555555555544
No 76
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=2.3e-17 Score=130.00 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=51.8
Q ss_pred hhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhhhcCccCC
Q 028942 72 IGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ 149 (201)
Q Consensus 72 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 149 (201)
+..+++|++|++++|.+..+ +..+..+++|+.|++++|.++.+ +..+..++.|+.|++++|.+..++...+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 34455555555555555544 33455556666666666666544 33455566666666666666555444456666666
Q ss_pred eEecccCCCCh
Q 028942 150 NISLHNNPISM 160 (201)
Q Consensus 150 ~l~l~~n~l~~ 160 (201)
+|++++|.++.
T Consensus 375 ~L~L~~N~l~~ 385 (455)
T 3v47_A 375 ELALDTNQLKS 385 (455)
T ss_dssp EEECCSSCCSC
T ss_pred EEECCCCcccc
Confidence 66666666653
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=7.3e-18 Score=126.91 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=129.4
Q ss_pred cCCCccEEecCCCcCc-ccCccc--cCCCCCcEEeccCCCCccCchhhhCc-----CCCCEEEecCCcCcccc-hhhhcC
Q 028942 5 KLINIQRLVLDDNHIE-RLPVNL--GKLQSLKVMTLDGNRITSLPDELGQL-----VRLERLSILGNMLTCLP-ETIGSL 75 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~l~l~~~~l~~~~~~~~~l-----~~L~~L~l~~~~~~~~~-~~~~~~ 75 (201)
++++|++|++++|.+. .+|..+ ..+++|+.|++++|.++.+|..+..+ ++|++|++++|.+..++ ..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6889999999999998 567765 88999999999999999877777666 89999999999999886 678889
Q ss_pred CCCCEEEeeCCCCCc---Ccccc--cCCCCCceEEcCCCcCCcCCh----hhhCCCccceEEccCCcCCccC-hhhhhcC
Q 028942 76 RNLVLLNVSNNKLKS---LPESI--GSCYSLEELQANDNLIGELPA----SICNLIHLKSLCLNNNNIGQIP-ANLLKDC 145 (201)
Q Consensus 76 ~~L~~L~l~~~~~~~---~~~~~--~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~ 145 (201)
++|++|++++|.+.. ++..+ ..+++|+.|++++|.++.++. .+..+++|+.|++++|.+...+ ...+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 999999999998653 23333 788999999999999985542 2456789999999999996654 3445668
Q ss_pred ccCCeEecccCCCC
Q 028942 146 KALQNISLHNNPIS 159 (201)
Q Consensus 146 ~~L~~l~l~~n~l~ 159 (201)
++|+.|++++|.++
T Consensus 253 ~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCEEECTTSCCS
T ss_pred CCCCEEECCCCccC
Confidence 89999999999988
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=2.7e-17 Score=129.88 Aligned_cols=102 Identities=28% Similarity=0.343 Sum_probs=52.3
Q ss_pred ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEe
Q 028942 4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNV 83 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 83 (201)
.++++|+.|++++|.++.+| .+..+++|+.|++++|.++.+| +..+++|++|++++|.++.++ +..+++|++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 34555566666665555554 4555555555555555555543 444555555555555555442 444455555555
Q ss_pred eCCCCCcCcccccCCCCCceEEcCCCcCC
Q 028942 84 SNNKLKSLPESIGSCYSLEELQANDNLIG 112 (201)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 112 (201)
++|.+..++ +..+++|+.|++++|.++
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSCCS
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCccc
Confidence 555444432 334444444444444443
No 79
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=2.2e-17 Score=126.68 Aligned_cols=150 Identities=23% Similarity=0.329 Sum_probs=130.1
Q ss_pred cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchh-hh-CcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCC
Q 028942 10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LG-QLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNN 86 (201)
Q Consensus 10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 86 (201)
+.++.+++.++.+|..+. ..++.|++++|.++.++.. +. .+++|++|++++|.++.+++ .+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578999999999987664 4689999999999988655 44 89999999999999999864 5889999999999999
Q ss_pred CCCcCcc-cccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCCccChhhh---hcCccCCeEecccCCCChh
Q 028942 87 KLKSLPE-SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLL---KDCKALQNISLHNNPISMD 161 (201)
Q Consensus 87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~l~l~~n~l~~~ 161 (201)
.+..++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++..++ ..+++|+.|++++|.|+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9998765 578899999999999999977 4578889999999999999999998776 5689999999999998753
No 80
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.6e-17 Score=117.95 Aligned_cols=152 Identities=27% Similarity=0.393 Sum_probs=127.9
Q ss_pred CCCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEE
Q 028942 6 LINIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLN 82 (201)
Q Consensus 6 l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~ 82 (201)
.+++++|++++|.+..++. .|..+++|+.|++++|.++.++.. +..+++|++|++++|.++.+++. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4579999999999998865 478899999999999999988665 57899999999999999988654 67899999999
Q ss_pred eeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942 83 VSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 83 l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
+++|.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.. .++.|+.+++..|.++.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 99999998865 468899999999999999988764 6788999999999997643 35567778887777765
Q ss_pred hhhc
Q 028942 161 DQFQ 164 (201)
Q Consensus 161 ~~~~ 164 (201)
....
T Consensus 180 ~ip~ 183 (208)
T 2o6s_A 180 VVRN 183 (208)
T ss_dssp TBBC
T ss_pred eeec
Confidence 4433
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.74 E-value=1.8e-17 Score=130.85 Aligned_cols=158 Identities=25% Similarity=0.320 Sum_probs=137.0
Q ss_pred ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL 81 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 81 (201)
++..+++|+.|++++|.++.++ +..+++|+.|++++|.++.++ +..+++|++|++++|.++.++ +..+++|++|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence 5778999999999999999886 888999999999999999875 788999999999999999885 7888999999
Q ss_pred EeeCCCCCcCcccccCCCCCceEEcCCC-cCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCCh
Q 028942 82 NVSNNKLKSLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
++++|.+..++ +..+++|+.|++++| .+..+ .+..++.|+.|++++|.++.++ +..+++|+.|++.+|.++.
T Consensus 133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSC
T ss_pred ECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCe
Confidence 99999998874 778999999999999 55566 3677899999999999998887 5789999999999999987
Q ss_pred hhhccccChhHH
Q 028942 161 DQFQQMEGFEEF 172 (201)
Q Consensus 161 ~~~~~l~~~~~l 172 (201)
..+..+..+..|
T Consensus 206 ~~l~~l~~L~~L 217 (457)
T 3bz5_A 206 LDLNQNIQLTFL 217 (457)
T ss_dssp CCCTTCTTCSEE
T ss_pred eccccCCCCCEE
Confidence 655555544443
No 82
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=7.4e-17 Score=127.72 Aligned_cols=150 Identities=25% Similarity=0.412 Sum_probs=96.3
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+..+++|+.|++++|.+..++ .+..+++|+.+++++|.+..++. +..+++|++|++++|.+..+++ +..+++|+.|+
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLE 293 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEE
Confidence 345667777777777766653 45666777777777777666543 5666677777777777666644 55666677777
Q ss_pred eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
+++|.+..++. +..+++|+.|++++|.++.++. +..++.|+.|++++|.+..++. +..+++|+.|++.+|.+.
T Consensus 294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred cCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCchh--hccCCCCCEEeCCCCccC
Confidence 77776665544 5566666677776666665544 4556666666666666655532 456666666666666655
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=1.2e-16 Score=126.53 Aligned_cols=150 Identities=28% Similarity=0.483 Sum_probs=91.2
Q ss_pred cccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEE
Q 028942 3 ISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN 82 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 82 (201)
+..+++|+.|++++|.+..+++ +..+++|+.+++++|.++.++ .+..+++|+.|++++|.+..+++ +..+++|+.|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 271 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELK 271 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEE
Confidence 4455666666666666665543 555666666666666666553 34556666666666666665544 55566666666
Q ss_pred eeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 83 VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 83 l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
+++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+..++. +..+++|+.|++.+|.++
T Consensus 272 l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 272 LGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 66666665544 5556666666666666665544 4556666666666666655543 455666666666666655
No 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=6.2e-18 Score=136.70 Aligned_cols=159 Identities=23% Similarity=0.247 Sum_probs=132.5
Q ss_pred ccCCCccEEecCCCcCccc---CccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccch--hhhcCCCC
Q 028942 4 SKLINIQRLVLDDNHIERL---PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE--TIGSLRNL 78 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~l---~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L 78 (201)
..+++|++|++++|.+..+ +..+..+++|+.+++++|.+..++..+..+++|++|++++|.+...++ .+..+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 4677888888888887754 566788889999999999888776667888899999999998877633 57788899
Q ss_pred CEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCC--cCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942 79 VLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIG--ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 155 (201)
Q Consensus 79 ~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~ 155 (201)
++|++++|.+... +..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+..+....+..+++|+.|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 9999999988754 566788999999999999887 5777888899999999999999888666688999999999999
Q ss_pred CCCChhh
Q 028942 156 NPISMDQ 162 (201)
Q Consensus 156 n~l~~~~ 162 (201)
|.++...
T Consensus 504 n~l~~~~ 510 (570)
T 2z63_A 504 NQLKSVP 510 (570)
T ss_dssp SCCSCCC
T ss_pred CcCCCCC
Confidence 9887543
No 85
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=2.4e-17 Score=113.25 Aligned_cols=134 Identities=23% Similarity=0.260 Sum_probs=120.6
Q ss_pred cCCCccEEecCCCcCc--ccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCCCEE
Q 028942 5 KLINIQRLVLDDNHIE--RLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLL 81 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~--~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L 81 (201)
..++++.|++++|.+. .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3478999999999998 8898889999999999999999987 677889999999999999998 66677779999999
Q ss_pred EeeCCCCCcCc--ccccCCCCCceEEcCCCcCCcCCh----hhhCCCccceEEccCCcCCccCh
Q 028942 82 NVSNNKLKSLP--ESIGSCYSLEELQANDNLIGELPA----SICNLIHLKSLCLNNNNIGQIPA 139 (201)
Q Consensus 82 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~l~~~~l~~~~~ 139 (201)
++++|.+..++ ..+..+++|+.|++++|.++.++. .+..++.|+.|++++|.+.+++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 99999999876 678899999999999999998876 78889999999999999987765
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=3.3e-17 Score=133.45 Aligned_cols=159 Identities=22% Similarity=0.289 Sum_probs=82.4
Q ss_pred cccCCCccEEecCCCcCccc---CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCccc-c-hhhhcCC
Q 028942 3 ISKLINIQRLVLDDNHIERL---PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-P-ETIGSLR 76 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~l---~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~-~~~~~~~ 76 (201)
+.++++|++|++++|.+..+ +..+..+++|+.+++++|.+..+ |..+..+++|++|++++|.+... + ..+..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 33445555555555554433 33445555555555555555433 33444555555555555555433 1 1244555
Q ss_pred CCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCc--C--ChhhhCCCccceEEccCCcCCccChhhhhcCccCCeE
Q 028942 77 NLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGE--L--PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 151 (201)
Q Consensus 77 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~--~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l 151 (201)
+|++|++++|.+... +..+..+++|+.|++++|.++. + +..+..+++|+.|++++|.+..++...+..+++|+.|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 555566655555533 3344555566666666665543 1 1234555566666666666655544445556666666
Q ss_pred ecccCCCChh
Q 028942 152 SLHNNPISMD 161 (201)
Q Consensus 152 ~l~~n~l~~~ 161 (201)
++++|.++..
T Consensus 506 ~Ls~N~l~~~ 515 (606)
T 3t6q_A 506 DLSHNRLTSS 515 (606)
T ss_dssp ECCSSCCCGG
T ss_pred ECCCCccCcC
Confidence 6666665543
No 87
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.73 E-value=1.8e-17 Score=133.56 Aligned_cols=153 Identities=21% Similarity=0.297 Sum_probs=79.4
Q ss_pred CccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEee
Q 028942 8 NIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVS 84 (201)
Q Consensus 8 ~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~ 84 (201)
.++.|++++|.++.+ |..|..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.+++. +..+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 455555555555544 334555555555555555555442 3345555555555555555554432 4555555555555
Q ss_pred CCCCCcC--cccccCCCCCceEEcCCCc-CCcCC-hhhhCCCccceEEccCC------------------------cCCc
Q 028942 85 NNKLKSL--PESIGSCYSLEELQANDNL-IGELP-ASICNLIHLKSLCLNNN------------------------NIGQ 136 (201)
Q Consensus 85 ~~~~~~~--~~~~~~~~~L~~L~l~~n~-i~~~~-~~~~~~~~L~~L~l~~~------------------------~l~~ 136 (201)
+|.+..+ +..+..+++|+.|++++|. ++.++ ..+..+++|+.|++++| .+..
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence 5555422 3344455555555555554 33333 23444444444444444 4444
Q ss_pred cChhhhhcCccCCeEecccCCCCh
Q 028942 137 IPANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 137 ~~~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
++...+..+++|+.|++++|.+..
T Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 187 LLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp HHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cchhhHhhcccccEEEccCCcccc
Confidence 444434556777777777777654
No 88
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.73 E-value=1.7e-17 Score=114.86 Aligned_cols=132 Identities=20% Similarity=0.309 Sum_probs=91.7
Q ss_pred ccCCCCCcEEeccCCCCccCchhhhCcC-CCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccc-cCCCCCce
Q 028942 26 LGKLQSLKVMTLDGNRITSLPDELGQLV-RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEE 103 (201)
Q Consensus 26 ~~~l~~L~~l~l~~~~l~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 103 (201)
+..+.+++.+++++|.++.++. +..+. .|++|++++|.++.+ ..+..+++|++|++++|.+..+|..+ ..+++|+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4456667777777777666643 33333 677777777777666 45666677777777777777665433 66777777
Q ss_pred EEcCCCcCCcCCh--hhhCCCccceEEccCCcCCccChh---hhhcCccCCeEecccCCCC
Q 028942 104 LQANDNLIGELPA--SICNLIHLKSLCLNNNNIGQIPAN---LLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 104 L~l~~n~i~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~~~L~~l~l~~n~l~ 159 (201)
|++++|.++.++. .+..+++|+.|++++|.+..++.. ++..+++|+.+++..|.+.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777777765 566777788888888888766654 5677888888888877755
No 89
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=7.7e-17 Score=116.17 Aligned_cols=130 Identities=32% Similarity=0.391 Sum_probs=117.5
Q ss_pred CCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEe
Q 028942 7 INIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNV 83 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 83 (201)
++|+.|++++|.+..+ +..|..+++|+.|++++|.++.++.. +..+++|++|++++|.++.+++. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 6799999999999987 66789999999999999999988754 57899999999999999998664 578999999999
Q ss_pred eCCCCCcCcccccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCc
Q 028942 84 SNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQ 136 (201)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~ 136 (201)
++|.+..+|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.-
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 999999999889999999999999999998874 57788999999999999853
No 90
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=6.6e-17 Score=113.55 Aligned_cols=128 Identities=25% Similarity=0.437 Sum_probs=97.4
Q ss_pred cEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCc-ccccCCCCCceEEcCCCcC
Q 028942 33 KVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLI 111 (201)
Q Consensus 33 ~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~i 111 (201)
+.++.+++.++.+|..+ .+.+++|++++|.++.+|..+..+.+|++|++++|.++.++ ..+..+++|+.|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 45666666666666543 24677777777777777777777777788888877777664 3567778888888888888
Q ss_pred CcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 112 GELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 112 ~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
+.++. .+..+++|+.|++++|.+..++...+..+++|+.|++.+|++.|+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 87754 5777888888999888888888877888889999999999998764
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=8.7e-17 Score=113.28 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=114.0
Q ss_pred ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCcc-CchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCCC
Q 028942 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITS-LPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLV 79 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~ 79 (201)
.+..+++|++|++++|.+..++ .+..+++|+.|++++|.++. .+..+..+++|++|++++|.++. .+..+..+++|+
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 4677899999999999777665 68889999999999999985 56778899999999999999986 467788999999
Q ss_pred EEEeeCCC-CCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCc
Q 028942 80 LLNVSNNK-LKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQ 136 (201)
Q Consensus 80 ~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~ 136 (201)
+|++++|. +..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.
T Consensus 140 ~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 140 SIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred EEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 99999998 88886 5888999999999999999987 67889999999999999854
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=8.9e-17 Score=115.16 Aligned_cols=129 Identities=26% Similarity=0.417 Sum_probs=115.8
Q ss_pred CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEe
Q 028942 7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNV 83 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 83 (201)
+.++.|++++|.+..++. .|..+++|+.|++++|.++.+ |..+..+++|++|++++|.++.+|+. +..+.+|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 478999999999998865 789999999999999999977 67789999999999999999999765 578999999999
Q ss_pred eCCCCCcC-cccccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCC
Q 028942 84 SNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIG 135 (201)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~ 135 (201)
++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999987 4578889999999999999998875 4778899999999999983
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=7.4e-17 Score=131.62 Aligned_cols=151 Identities=22% Similarity=0.239 Sum_probs=127.8
Q ss_pred EecCCCcCcccCccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCCC
Q 028942 12 LVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLK 89 (201)
Q Consensus 12 L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 89 (201)
++-++-.++.+|..+. ++++.|++++|.++.++ .+|.++++|++|++++|.++.+++ .|..+++|++|++++|.+.
T Consensus 36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 4445556778887654 47999999999999886 468999999999999999999865 5788999999999999999
Q ss_pred cCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCCccC-hhhhhcCccCCeEecccCCCChhhhc
Q 028942 90 SLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNISLHNNPISMDQFQ 164 (201)
Q Consensus 90 ~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~ 164 (201)
.+|. .+..+++|+.|++++|.++.++. .++.+++|+.|++++|.+..+. ...+..++.|++|++.+|.++.....
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 8875 57889999999999999998875 4788999999999999996543 34578899999999999998754433
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.4e-17 Score=126.33 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=93.8
Q ss_pred ccCCCccEEecCCCcCcc--cCccccCCCCCcEEeccCCCCc-cCchhhhCcCCCCEEEecCC-cCcc--cchhhhcCCC
Q 028942 4 SKLINIQRLVLDDNHIER--LPVNLGKLQSLKVMTLDGNRIT-SLPDELGQLVRLERLSILGN-MLTC--LPETIGSLRN 77 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~~~~ 77 (201)
..+++|++|++++|.+.. ++..+..+++|+.|++++|.++ ..+..+..+++|++|++++| .++. ++..+..+++
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 445667777777776652 5555666677777777777665 34555666667777777776 4552 4445566666
Q ss_pred CCEEEeeCC-CCCc--CcccccCCC-CCceEEcCCC--cCC--cCChhhhCCCccceEEccCCc-CCccChhhhhcCccC
Q 028942 78 LVLLNVSNN-KLKS--LPESIGSCY-SLEELQANDN--LIG--ELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKAL 148 (201)
Q Consensus 78 L~~L~l~~~-~~~~--~~~~~~~~~-~L~~L~l~~n--~i~--~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L 148 (201)
|++|++++| .+.. ++..+..++ +|+.|++++| .++ .++..+..+++|+.|++++|. ++......+..+++|
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 777777766 6553 344455566 6666666666 332 344445556666666666666 432222234556666
Q ss_pred CeEecccC-CCChh
Q 028942 149 QNISLHNN-PISMD 161 (201)
Q Consensus 149 ~~l~l~~n-~l~~~ 161 (201)
+.|++.+| .+...
T Consensus 250 ~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 250 QHLSLSRCYDIIPE 263 (336)
T ss_dssp CEEECTTCTTCCGG
T ss_pred CEeeCCCCCCCCHH
Confidence 66666666 34333
No 95
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=6.1e-17 Score=109.01 Aligned_cols=124 Identities=27% Similarity=0.322 Sum_probs=64.0
Q ss_pred CCCcEEeccCCCCc--cCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCc-CcccccCCCCCceEEc
Q 028942 30 QSLKVMTLDGNRIT--SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQA 106 (201)
Q Consensus 30 ~~L~~l~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l 106 (201)
++++.+++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34444444444444 3444344444455555555544444 334444555555555555544 3444444555555555
Q ss_pred CCCcCCcCC--hhhhCCCccceEEccCCcCCccCh---hhhhcCccCCeEecc
Q 028942 107 NDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLH 154 (201)
Q Consensus 107 ~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~l~l~ 154 (201)
++|.++.++ ..+..++.|+.|++++|.+..++. ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555443 445556666666666666655554 445666666666654
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=5.5e-18 Score=127.46 Aligned_cols=153 Identities=17% Similarity=0.155 Sum_probs=85.6
Q ss_pred CCCccEEecCCCcCcc-cCccc--cCCCCCcEEeccCCCCccC-c----hhhhCcCCCCEEEecCCcCcccc-hhhhcCC
Q 028942 6 LINIQRLVLDDNHIER-LPVNL--GKLQSLKVMTLDGNRITSL-P----DELGQLVRLERLSILGNMLTCLP-ETIGSLR 76 (201)
Q Consensus 6 l~~L~~L~l~~~~l~~-l~~~~--~~l~~L~~l~l~~~~l~~~-~----~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~ 76 (201)
+++|++|++++|.+.. .|..+ ..+++|+.|++++|.+... + ..+..+++|++|++++|.+..++ ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456777777776663 34444 5666677777776666632 1 22335666677777766666553 3455666
Q ss_pred CCCEEEeeCCCCCc---Cc--ccccCCCCCceEEcCCCcCCcCChh----hhCCCccceEEccCCcCCcc-ChhhhhcC-
Q 028942 77 NLVLLNVSNNKLKS---LP--ESIGSCYSLEELQANDNLIGELPAS----ICNLIHLKSLCLNNNNIGQI-PANLLKDC- 145 (201)
Q Consensus 77 ~L~~L~l~~~~~~~---~~--~~~~~~~~L~~L~l~~n~i~~~~~~----~~~~~~L~~L~l~~~~l~~~-~~~~~~~~- 145 (201)
+|++|++++|.+.. ++ ..+..+++|+.|++++|.++.++.. +..++.|++|++++|.+... |.. +..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence 66666666666542 21 1224555666666666666544431 34455666666666666444 322 2222
Q ss_pred --ccCCeEecccCCCC
Q 028942 146 --KALQNISLHNNPIS 159 (201)
Q Consensus 146 --~~L~~l~l~~n~l~ 159 (201)
++|++|++++|.++
T Consensus 249 ~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCTTCCCEECCSSCCC
T ss_pred CcCcCCEEECCCCCCC
Confidence 45666666666655
No 97
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.71 E-value=5.9e-17 Score=112.15 Aligned_cols=134 Identities=21% Similarity=0.241 Sum_probs=117.1
Q ss_pred ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhh-hcCCCCCE
Q 028942 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVL 80 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 80 (201)
++.++.+|++|++++|.++.++......++|+.|++++|.++.+ ..+..+++|++|++++|.++.+|+.+ ..+++|++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 46778899999999999998865444445999999999999987 56788999999999999999987655 88999999
Q ss_pred EEeeCCCCCcCcc--cccCCCCCceEEcCCCcCCcCChh----hhCCCccceEEccCCcCCc
Q 028942 81 LNVSNNKLKSLPE--SIGSCYSLEELQANDNLIGELPAS----ICNLIHLKSLCLNNNNIGQ 136 (201)
Q Consensus 81 L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~----~~~~~~L~~L~l~~~~l~~ 136 (201)
|++++|.+..+|. .+..+++|+.+++++|.++.++.. +..++.|+.|+++.|...+
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999998876 788899999999999999988874 8889999999999988744
No 98
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=4.6e-17 Score=109.62 Aligned_cols=125 Identities=24% Similarity=0.272 Sum_probs=108.1
Q ss_pred cCCCccEEecCCCcCc--ccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcc-cchhhhcCCCCCEE
Q 028942 5 KLINIQRLVLDDNHIE--RLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLL 81 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~--~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L 81 (201)
..++++.|++++|.+. .+|..+..+++|+.+++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3467899999999998 7888888999999999999999887 667888999999999999988 66667778999999
Q ss_pred EeeCCCCCcCc--ccccCCCCCceEEcCCCcCCcCCh----hhhCCCccceEEcc
Q 028942 82 NVSNNKLKSLP--ESIGSCYSLEELQANDNLIGELPA----SICNLIHLKSLCLN 130 (201)
Q Consensus 82 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~l~ 130 (201)
++++|.+..++ ..+..+++|+.|++++|.++.++. .+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999998764 678889999999999999988875 57788899998875
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1.9e-16 Score=113.48 Aligned_cols=129 Identities=22% Similarity=0.293 Sum_probs=114.6
Q ss_pred CCccEEecCCCcCcccCc--cccCCCCCcEEeccCCCCccCch-hhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEE
Q 028942 7 INIQRLVLDDNHIERLPV--NLGKLQSLKVMTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLN 82 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~--~~~~l~~L~~l~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~ 82 (201)
..+++|++++|.++.+++ .|..+++|+.|++++|.++.++. .+..+++|++|++++|.++.+++ .+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 357899999999998743 48899999999999999998755 68899999999999999998865 478899999999
Q ss_pred eeCCCCCcC-cccccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCC
Q 028942 83 VSNNKLKSL-PESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIG 135 (201)
Q Consensus 83 l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~ 135 (201)
+++|.+..+ |..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+.
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999999977 56788899999999999999987 567888999999999999984
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=7.2e-17 Score=121.73 Aligned_cols=153 Identities=21% Similarity=0.256 Sum_probs=102.6
Q ss_pred ccCCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchh-----------
Q 028942 4 SKLINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET----------- 71 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------- 71 (201)
..+++|++|++++|.+..++ ..+..+++|+.|++++|.+...++ +..+++|++|++++|.++.++..
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence 34568888888888888775 567888888888888888876544 67788888888888877654321
Q ss_pred ------hhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCC-hhh-hCCCccceEEccCCcCCccChhhh
Q 028942 72 ------IGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASI-CNLIHLKSLCLNNNNIGQIPANLL 142 (201)
Q Consensus 72 ------~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~-~~~-~~~~~L~~L~l~~~~l~~~~~~~~ 142 (201)
...+++|++|++++|.+..++. .+..+++|+.|++++|.++.++ ..+ ..++.|+.|++++|.+..++..
T Consensus 110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-- 187 (317)
T 3o53_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-- 187 (317)
T ss_dssp CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--
T ss_pred ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--
Confidence 0123455666666666655532 4555667777777777776543 222 3466777777777777666442
Q ss_pred hcCccCCeEecccCCCC
Q 028942 143 KDCKALQNISLHNNPIS 159 (201)
Q Consensus 143 ~~~~~L~~l~l~~n~l~ 159 (201)
..+++|+.|++++|.++
T Consensus 188 ~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 188 VVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp CCCTTCCEEECCSSCCC
T ss_pred cccccCCEEECCCCcCC
Confidence 24677777777777776
No 101
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=2.5e-16 Score=126.19 Aligned_cols=142 Identities=20% Similarity=0.219 Sum_probs=123.9
Q ss_pred cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCC
Q 028942 10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNK 87 (201)
Q Consensus 10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 87 (201)
+.+++++|.++.+|..+. ++++.+++++|.+..++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 578999999999988766 89999999999999775 5788999999999999999987 6688899999999999999
Q ss_pred CCcCcccccCCCCCceEEcCCCcCCc--CChhhhCCCccceEEccCCcCCccChhhhhcCccC--CeEecccCCC
Q 028942 88 LKSLPESIGSCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL--QNISLHNNPI 158 (201)
Q Consensus 88 ~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L--~~l~l~~n~l 158 (201)
+..+|.. .+++|+.|++++|.++. +|..++.+++|++|++++|.+... .+..+++| +.+++.+|.+
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccc
Confidence 9988776 78999999999999986 567889999999999999998652 35667777 9999999988
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=1.3e-17 Score=138.43 Aligned_cols=116 Identities=31% Similarity=0.410 Sum_probs=77.5
Q ss_pred CccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCc
Q 028942 23 PVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLE 102 (201)
Q Consensus 23 ~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 102 (201)
+..+..+..|+.|++++|.+..+|..+..++.|++|++++|.++.+|..+..+.+|++|++++|.+..+|..+..+++|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 44566666777777777777766666666777777777777777666666667777777777777776666666677777
Q ss_pred eEEcCCCcCCcCChhhhCCCccceEEccCCcCCccC
Q 028942 103 ELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIP 138 (201)
Q Consensus 103 ~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~ 138 (201)
.|++++|.++.+|..+..+++|+.|++++|.+...+
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCC
Confidence 777777777777666666777777777777765433
No 103
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.6e-16 Score=111.52 Aligned_cols=128 Identities=23% Similarity=0.411 Sum_probs=69.1
Q ss_pred cEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchh--hhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCC
Q 028942 33 KVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET--IGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDN 109 (201)
Q Consensus 33 ~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n 109 (201)
+.++++++.++.+|..+. ..+++|++++|.++.+++. +..+++|++|++++|.+..+ |..+..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 344444444444443221 1445555555555544331 44555555555555555544 334555555666666666
Q ss_pred cCCcCCh-hhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 110 LIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 110 ~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
.++.++. .+..+++|+.|++++|.+..+....+..+++|+.|++.+|++.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 5554433 2455666666666666665554444566666777777777766553
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=1.5e-16 Score=126.60 Aligned_cols=153 Identities=21% Similarity=0.241 Sum_probs=103.2
Q ss_pred cCCCccEEecCCCcCcccC-ccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchh------------
Q 028942 5 KLINIQRLVLDDNHIERLP-VNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPET------------ 71 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------ 71 (201)
.+++|+.|++++|.+..++ ..|..+++|+.|++++|.++..++ +..+++|++|++++|.++.++..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 3457889999999888774 578888999999999998886544 77788888888888877665422
Q ss_pred -----hhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcC-Chhhh-CCCccceEEccCCcCCccChhhhh
Q 028942 72 -----IGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGEL-PASIC-NLIHLKSLCLNNNNIGQIPANLLK 143 (201)
Q Consensus 72 -----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~ 143 (201)
...+++|+.|++++|.+..+ |..+..+++|+.|++++|.++.+ +..+. .++.|+.|++++|.+..++.. .
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~ 188 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--V 188 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--C
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--c
Confidence 01234556666666666544 33455666777777777766643 33333 466777777777777655442 3
Q ss_pred cCccCCeEecccCCCCh
Q 028942 144 DCKALQNISLHNNPISM 160 (201)
Q Consensus 144 ~~~~L~~l~l~~n~l~~ 160 (201)
.+++|+.|++++|.++.
T Consensus 189 ~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CCTTCCEEECCSSCCCE
T ss_pred cCCCCCEEECCCCCCCC
Confidence 46777777777777763
No 105
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.69 E-value=4e-16 Score=126.15 Aligned_cols=146 Identities=23% Similarity=0.242 Sum_probs=124.5
Q ss_pred CCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEe
Q 028942 6 LINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNV 83 (201)
Q Consensus 6 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l 83 (201)
+...+.++++++.++.+|..+. ++++.|++++|.++.++ ..+..+++|++|++++|.++.+ |..+..+++|++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 3455789999999999988664 79999999999999885 5788999999999999999987 566888999999999
Q ss_pred eCCCCCcCcccccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEccCCcCCccChhhhhcCccC--CeEecccCCC
Q 028942 84 SNNKLKSLPESIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL--QNISLHNNPI 158 (201)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L--~~l~l~~n~l 158 (201)
++|.+..+|.. .+++|+.|++++|.++.++ ..+..+++|++|++++|.+.... +..+++| +.+++++|.+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccc
Confidence 99999988876 7899999999999998764 68899999999999999996643 3445555 9999999988
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=8.4e-17 Score=122.06 Aligned_cols=163 Identities=20% Similarity=0.261 Sum_probs=132.6
Q ss_pred cccCCCccEEecCCCcCc-ccCccccCCCCCcEEeccCC-CCc--cCchhhhCcCCCCEEEecCC-cCcc--cchhhhcC
Q 028942 3 ISKLINIQRLVLDDNHIE-RLPVNLGKLQSLKVMTLDGN-RIT--SLPDELGQLVRLERLSILGN-MLTC--LPETIGSL 75 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~l~l~~~-~l~--~~~~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~~ 75 (201)
+.++++|++|++++|.+. ..+..+..+++|+.|++++| .++ .++..+..+++|++|++++| .++. ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 467899999999999988 45777888999999999999 677 36666888999999999999 8875 56677889
Q ss_pred C-CCCEEEeeCCC--CC--cCcccccCCCCCceEEcCCCc-CC-cCChhhhCCCccceEEccCCc-CCccChhhhhcCcc
Q 028942 76 R-NLVLLNVSNNK--LK--SLPESIGSCYSLEELQANDNL-IG-ELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKA 147 (201)
Q Consensus 76 ~-~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l~~n~-i~-~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~ 147 (201)
+ +|++|++++|. +. .++..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|. +.......+..+++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 9 99999999994 43 456667789999999999998 65 455677888999999999995 32222234678999
Q ss_pred CCeEecccCCCChhhhccc
Q 028942 148 LQNISLHNNPISMDQFQQM 166 (201)
Q Consensus 148 L~~l~l~~n~l~~~~~~~l 166 (201)
|+.|++.+| ++...+..+
T Consensus 274 L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 274 LKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp CCEEECTTS-SCTTCHHHH
T ss_pred CCEEeccCc-cCHHHHHHH
Confidence 999999999 666555443
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=1e-15 Score=124.82 Aligned_cols=88 Identities=30% Similarity=0.373 Sum_probs=65.7
Q ss_pred CCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942 76 RNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 155 (201)
Q Consensus 76 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~ 155 (201)
++|++|++++|.+..+| ..+++|+.|++++|.++.+|. .+++|+.|++++|.+..+|.. +..+++|+.|++.+
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEG 293 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCS
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecC
Confidence 45666666666666655 334677888888888877775 567889999999999888765 68899999999999
Q ss_pred CCCChhhhccccChh
Q 028942 156 NPISMDQFQQMEGFE 170 (201)
Q Consensus 156 n~l~~~~~~~l~~~~ 170 (201)
|+++...+..+..+.
T Consensus 294 N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 294 NPLSERTLQALREIT 308 (622)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHhcc
Confidence 999877665544443
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=7.5e-17 Score=124.73 Aligned_cols=88 Identities=24% Similarity=0.298 Sum_probs=41.1
Q ss_pred cCCCCCEEEeeCCCCC-----cCcccccCCCCCceEEcCCCcCCcC-----ChhhhC--CCccceEEccCCcCCc-----
Q 028942 74 SLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGEL-----PASICN--LIHLKSLCLNNNNIGQ----- 136 (201)
Q Consensus 74 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~n~i~~~-----~~~~~~--~~~L~~L~l~~~~l~~----- 136 (201)
.+++|++|++++|.++ .++..+..+++|+.|++++|.++.. +..+.. +++|+.|++++|.+..
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 3344444444444441 2233334444444555554444422 222322 4555555555555543
Q ss_pred cChhhhhcCccCCeEecccCCCChh
Q 028942 137 IPANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 137 ~~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
++..+..++++|+.|++++|+++..
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHhcCCCceEEEccCCcCCcc
Confidence 4444334455666666666665544
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=5.7e-16 Score=124.98 Aligned_cols=136 Identities=30% Similarity=0.375 Sum_probs=69.5
Q ss_pred CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhh--------------
Q 028942 8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG-------------- 73 (201)
Q Consensus 8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------- 73 (201)
+++.|++++|.++.+|..+. ++|+.|++++|.++.+| ..+++|++|++++|.++.+|. +.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLT 133 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCC
Confidence 45555555555555544332 44555555555555444 223444444444444444433 22
Q ss_pred ----cCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccC-
Q 028942 74 ----SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL- 148 (201)
Q Consensus 74 ----~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L- 148 (201)
.+++|++|++++|.+..+|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.++.+|. +.. +|
T Consensus 134 ~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~ 203 (571)
T 3cvr_A 134 MLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA--VPV--RNH 203 (571)
T ss_dssp CCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC--CC------
T ss_pred CCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh--HHH--hhh
Confidence 34455555555555555444 34556666666666655555 33 566666666666665554 221 44
Q ss_pred ------CeEecccCCCC
Q 028942 149 ------QNISLHNNPIS 159 (201)
Q Consensus 149 ------~~l~l~~n~l~ 159 (201)
+.|++++|.|+
T Consensus 204 ~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 204 HSEETEIFFRCRENRIT 220 (571)
T ss_dssp ----CCEEEECCSSCCC
T ss_pred cccccceEEecCCCcce
Confidence 66677766665
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.6e-16 Score=131.91 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=106.7
Q ss_pred CCccEEecCCCcCcccCccccCCCCCcEE-----eccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEE
Q 028942 7 INIQRLVLDDNHIERLPVNLGKLQSLKVM-----TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLL 81 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~l-----~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 81 (201)
+.++.|++.++.+...+..+.....|..+ ++..+.+...+..+..+..|+.|++++|.+..+|..+..+.+|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 34667788777777665544433333333 3334444445667888999999999999999999888899999999
Q ss_pred EeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChh
Q 028942 82 NVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
++++|.+..+|..+..+++|+.|++++|.++.+|..+..+++|++|+|++|.++.+|.. +..+++|+.|++++|.++..
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSH
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCC
Confidence 99999999999989999999999999999999999999999999999999999999887 78999999999999999865
Q ss_pred hhccc
Q 028942 162 QFQQM 166 (201)
Q Consensus 162 ~~~~l 166 (201)
....+
T Consensus 332 ~p~~~ 336 (727)
T 4b8c_D 332 FLKIL 336 (727)
T ss_dssp HHHHH
T ss_pred ChHHH
Confidence 44433
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=8.4e-17 Score=124.44 Aligned_cols=159 Identities=25% Similarity=0.311 Sum_probs=130.2
Q ss_pred cccCCCccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCcc-----CchhhhCc---------CCCCEEEecCC
Q 028942 3 ISKLINIQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRITS-----LPDELGQL---------VRLERLSILGN 63 (201)
Q Consensus 3 ~~~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~~-----~~~~~~~l---------~~L~~L~l~~~ 63 (201)
+.++++|++|++++|.+.. ++..+..+++|+.|++++|.++. ++..+..+ +.|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 4688999999999999985 67788899999999999999873 33344445 89999999999
Q ss_pred cCc--ccc---hhhhcCCCCCEEEeeCCCCCc------CcccccCCCCCceEEcCCCcCC-----cCChhhhCCCccceE
Q 028942 64 MLT--CLP---ETIGSLRNLVLLNVSNNKLKS------LPESIGSCYSLEELQANDNLIG-----ELPASICNLIHLKSL 127 (201)
Q Consensus 64 ~~~--~~~---~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~~~~L~~L 127 (201)
.+. .++ ..+..+++|++|++++|.+.. ++..+..+++|+.|++++|.++ .++..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 987 344 466788999999999999882 2336788999999999999984 567778889999999
Q ss_pred EccCCcCCccCh----hhhh--cCccCCeEecccCCCChh
Q 028942 128 CLNNNNIGQIPA----NLLK--DCKALQNISLHNNPISMD 161 (201)
Q Consensus 128 ~l~~~~l~~~~~----~~~~--~~~~L~~l~l~~n~l~~~ 161 (201)
++++|.++.... ..+. .+++|+.|++++|.++..
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 999999965421 2243 389999999999999874
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.66 E-value=2e-18 Score=121.79 Aligned_cols=137 Identities=23% Similarity=0.290 Sum_probs=105.7
Q ss_pred cccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCC
Q 028942 20 ERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY 99 (201)
Q Consensus 20 ~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 99 (201)
..+|..+..+++|+.|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+| .+..++
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 344457888888888888888888887 777888888888888888888777777788888888888888776 467778
Q ss_pred CCceEEcCCCcCCcCCh--hhhCCCccceEEccCCcCCccC----------hhhhhcCccCCeEecccCCCCh
Q 028942 100 SLEELQANDNLIGELPA--SICNLIHLKSLCLNNNNIGQIP----------ANLLKDCKALQNISLHNNPISM 160 (201)
Q Consensus 100 ~L~~L~l~~n~i~~~~~--~~~~~~~L~~L~l~~~~l~~~~----------~~~~~~~~~L~~l~l~~n~l~~ 160 (201)
+|+.|++++|.++.++. .+..+++|+.|++++|.+.... ..++..+++|+.|+ +++++.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88888888888887654 5777888888888888874332 23467788888776 566553
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=2.6e-15 Score=105.42 Aligned_cols=124 Identities=23% Similarity=0.394 Sum_probs=111.2
Q ss_pred cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCC
Q 028942 10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKL 88 (201)
Q Consensus 10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 88 (201)
+.++++++.++.+|..+. ++++.|++++|.++.+|..+..+++|+.|++++|.++.+++ .+..+.+|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 578999999999987654 68999999999999999889999999999999999999864 588999999999999999
Q ss_pred CcCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccceEEccCCcCC
Q 028942 89 KSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIG 135 (201)
Q Consensus 89 ~~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~~~l~ 135 (201)
..++. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 98864 68889999999999999998876 4778999999999999883
No 114
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=7.7e-16 Score=129.93 Aligned_cols=154 Identities=23% Similarity=0.252 Sum_probs=112.0
Q ss_pred CCccEEecCCCcCccc-CccccCCCCCcEEeccCCC-CccC-chhhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEE
Q 028942 7 INIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNR-ITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLN 82 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~-l~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~ 82 (201)
++++.|++++|.++.+ +..|..+++|+.|++++|. +..+ |..+..+++|++|++++|.++.+ |..+..+.+|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 5778888888888765 6678888888888888874 3355 56677888888888888888776 56777888888888
Q ss_pred eeCCCCCc-Cccc--ccCCCCCceEEcCCCcCCcCC--hhhhCCCccceEEccCCcCCccChhhhhcC--ccCCeEeccc
Q 028942 83 VSNNKLKS-LPES--IGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPANLLKDC--KALQNISLHN 155 (201)
Q Consensus 83 l~~~~~~~-~~~~--~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--~~L~~l~l~~ 155 (201)
+++|.+.. ++.. +..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+..+....+..+ ++|+.|++.+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 88888774 3433 677888888888888887553 457778888888888888765544334444 5666666666
Q ss_pred CCCCh
Q 028942 156 NPISM 160 (201)
Q Consensus 156 n~l~~ 160 (201)
|.+..
T Consensus 184 n~l~~ 188 (844)
T 3j0a_A 184 NSLYS 188 (844)
T ss_dssp SBSCC
T ss_pred Ccccc
Confidence 66543
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=2e-15 Score=105.84 Aligned_cols=124 Identities=23% Similarity=0.348 Sum_probs=109.8
Q ss_pred cEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchh--hhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCC
Q 028942 10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE--LGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNN 86 (201)
Q Consensus 10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~--~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 86 (201)
+.++++++.++.+|..+.. +++.|++++|.++.++.. +..+++|++|++++|.++.+ |..+..+.+|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6899999999999886654 899999999999988653 78899999999999999987 667889999999999999
Q ss_pred CCCcCcc-cccCCCCCceEEcCCCcCCcC-ChhhhCCCccceEEccCCcCC
Q 028942 87 KLKSLPE-SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIG 135 (201)
Q Consensus 87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~~~l~ 135 (201)
.+..++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9997754 578899999999999999966 567888999999999999985
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=3.7e-15 Score=117.61 Aligned_cols=120 Identities=33% Similarity=0.487 Sum_probs=64.1
Q ss_pred CCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCC
Q 028942 7 INIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNN 86 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 86 (201)
++|++|++++|.++.+| .+..+++|+.+++++|.++.+|.. ..+|++|++++|.++.+| .+..+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 46667777777766666 466666777777776666655432 235666666666655554 3455555555555555
Q ss_pred CCCcCcccccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCC
Q 028942 87 KLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIG 135 (201)
Q Consensus 87 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~ 135 (201)
.+..+|... ++|+.|++++|.++.+|. +..++.|+.|++++|.+.
T Consensus 206 ~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 206 SLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS
T ss_pred cCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCC
Confidence 554443321 244444444444444432 334444444444444443
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=4e-15 Score=102.94 Aligned_cols=129 Identities=28% Similarity=0.441 Sum_probs=94.7
Q ss_pred CcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCC
Q 028942 32 LKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDN 109 (201)
Q Consensus 32 L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n 109 (201)
.+.++++++.++.+|..+ .+.+++|++++|.++.+++ .+..+++|++|++++|.+..++. .+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 445566666666665433 3466777777777766654 34667777777777777776654 3567788888888888
Q ss_pred cCCcCChh-hhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 110 LIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 110 ~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
.++.++.. +..+++|+.|++++|.+..++..++..+++|+.|++.+|++.++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 88877653 567888999999999998888877788899999999999988654
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=5e-15 Score=116.86 Aligned_cols=120 Identities=27% Similarity=0.409 Sum_probs=65.8
Q ss_pred CCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCC
Q 028942 30 QSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN 109 (201)
Q Consensus 30 ~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n 109 (201)
++|+.+++++|.++.+| ++..+++|++|++++|.++.+|... .+|++|++++|.+..+| .+..+++|+.|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 35566666666555555 3555556666666666555554322 35556666666555554 3555556666666666
Q ss_pred cCCcCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCC
Q 028942 110 LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 110 ~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
.++.+|.. .++|+.|++++|.+..++. +..+++|+.|++++|.++
T Consensus 206 ~l~~l~~~---~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 206 SLKKLPDL---PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CCSSCCCC---CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred cCCcCCCC---cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCC
Confidence 55554432 2355566666665555542 445555555555555544
No 119
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.62 E-value=3.1e-15 Score=126.24 Aligned_cols=162 Identities=22% Similarity=0.263 Sum_probs=131.1
Q ss_pred ccccCCCccEEecCCCcC-ccc-CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcc-cchh--hhcC
Q 028942 2 EISKLINIQRLVLDDNHI-ERL-PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTC-LPET--IGSL 75 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l-~~l-~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~-~~~~--~~~~ 75 (201)
+|.++++|+.|++++|.. ..+ |..|..+++|+.|++++|.+..+ |..+..+++|++|++++|.++. ++.. +..+
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 578999999999999954 466 67899999999999999999966 7788999999999999999986 4444 7889
Q ss_pred CCCCEEEeeCCCCCcC--cccccCCCCCceEEcCCCcCCcC-ChhhhCC--CccceEEccCCcCCccChhhhhcCc----
Q 028942 76 RNLVLLNVSNNKLKSL--PESIGSCYSLEELQANDNLIGEL-PASICNL--IHLKSLCLNNNNIGQIPANLLKDCK---- 146 (201)
Q Consensus 76 ~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~---- 146 (201)
++|++|++++|.+..+ +..+..+++|+.|++++|.++.+ +..+..+ ++|+.|++++|.+.......+..+.
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 9999999999999865 34689999999999999998854 4455554 7899999999998543322234444
Q ss_pred --cCCeEecccCCCChhhh
Q 028942 147 --ALQNISLHNNPISMDQF 163 (201)
Q Consensus 147 --~L~~l~l~~n~l~~~~~ 163 (201)
.|+.|++++|.++....
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTT
T ss_pred cCceeEEecCCCcCchhHH
Confidence 39999999998765433
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=7.4e-16 Score=117.74 Aligned_cols=167 Identities=21% Similarity=0.259 Sum_probs=114.9
Q ss_pred CCccEEecCCCcCcccCc-cccCCCCCcEEeccCCCCc-cCch-hhhCcCCCCE-EEecCCcCcccc-hhhhcCCCCCEE
Q 028942 7 INIQRLVLDDNHIERLPV-NLGKLQSLKVMTLDGNRIT-SLPD-ELGQLVRLER-LSILGNMLTCLP-ETIGSLRNLVLL 81 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~l~l~~~~l~-~~~~-~~~~l~~L~~-L~l~~~~~~~~~-~~~~~~~~L~~L 81 (201)
+++++|++++|.|+.+|. .|..+++|+.|++++|.+. .+|. .+.+++++++ +.+..|+++.++ ..+..+++|+++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 467888888888888865 5788888888888888764 3443 3556666654 445556777764 345667777777
Q ss_pred EeeCCCCCcCcc--------------------------cccCC-CCCceEEcCCCcCCcCChhhhCCCccceEEcc-CCc
Q 028942 82 NVSNNKLKSLPE--------------------------SIGSC-YSLEELQANDNLIGELPASICNLIHLKSLCLN-NNN 133 (201)
Q Consensus 82 ~l~~~~~~~~~~--------------------------~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~-~~~ 133 (201)
++++|.+..++. .+... ..++.|++++|.++.++........++.+++. +|.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 777776553321 11112 34677888888888887765566778888886 467
Q ss_pred CCccChhhhhcCccCCeEecccCCCChhhhccccChhHHH
Q 028942 134 IGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFE 173 (201)
Q Consensus 134 l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l~~~~~l~ 173 (201)
++.++..++.++++|+.|++++|.|+.-....+..+++|+
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence 7888888889999999999999988754333444444443
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=5.2e-15 Score=119.61 Aligned_cols=121 Identities=25% Similarity=0.323 Sum_probs=108.4
Q ss_pred CCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCc
Q 028942 31 SLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNL 110 (201)
Q Consensus 31 ~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 110 (201)
.|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58899999999999986 88999999999999999999999999999999999999999988 78899999999999999
Q ss_pred CCcC--ChhhhCCCccceEEccCCcCCccCh---hhhhcCccCCeEec
Q 028942 111 IGEL--PASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISL 153 (201)
Q Consensus 111 i~~~--~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~l~l 153 (201)
++.+ |..+..+++|+.|++++|.+...+. .++..+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9988 7889999999999999999977654 34566888988864
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=2e-15 Score=115.87 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=30.9
Q ss_pred CCceEEcCCCcCCcCCh-----hhhCC-CccceEEccCCcCCc-----cChhhhhcCccCCeEecccCCCChh
Q 028942 100 SLEELQANDNLIGELPA-----SICNL-IHLKSLCLNNNNIGQ-----IPANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 100 ~L~~L~l~~n~i~~~~~-----~~~~~-~~L~~L~l~~~~l~~-----~~~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
+|+.|++++|.++.... .+..+ +.|+.|++++|.++. ++..+....++|+.|++++|.++..
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 55555555555543321 22333 356666666666644 2222222234666666666666543
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=9e-15 Score=118.24 Aligned_cols=137 Identities=26% Similarity=0.377 Sum_probs=112.9
Q ss_pred CccccCCCCCcEEe-ccCCCCccCch------hhhC--cCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcc
Q 028942 23 PVNLGKLQSLKVMT-LDGNRITSLPD------ELGQ--LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE 93 (201)
Q Consensus 23 ~~~~~~l~~L~~l~-l~~~~l~~~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 93 (201)
|..+..+++|+.|+ ++.+.+..++. .+.. ...|+.|++++|.++.+|. +..+.+|+.|++++|.+..+|.
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~ 480 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP 480 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch
Confidence 34456677788887 55554443221 1221 2358999999999999987 8999999999999999999999
Q ss_pred cccCCCCCceEEcCCCcCCcCChhhhCCCccceEEccCCcCCccC-hhhhhcCccCCeEecccCCCChh
Q 028942 94 SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNISLHNNPISMD 161 (201)
Q Consensus 94 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~l~l~~n~l~~~ 161 (201)
.+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+. +..+..+++|+.|++++|+++..
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 9999999999999999999998 7889999999999999998884 44578999999999999998754
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=3.8e-15 Score=114.26 Aligned_cols=156 Identities=20% Similarity=0.319 Sum_probs=106.4
Q ss_pred CCccEEecCCCcCcccC-----ccccCCC-CCcEEeccCCCCccC-chhhhCc-----CCCCEEEecCCcCcccchh---
Q 028942 7 INIQRLVLDDNHIERLP-----VNLGKLQ-SLKVMTLDGNRITSL-PDELGQL-----VRLERLSILGNMLTCLPET--- 71 (201)
Q Consensus 7 ~~L~~L~l~~~~l~~l~-----~~~~~l~-~L~~l~l~~~~l~~~-~~~~~~l-----~~L~~L~l~~~~~~~~~~~--- 71 (201)
++|++|++++|.+...+ ..+..++ +|+.|++++|.++.. +..+..+ +.|++|++++|.++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 44888888888887665 4567777 788888888888754 3344443 7788888888887765322
Q ss_pred --hhcC-CCCCEEEeeCCCCCcCcc-----cccC-CCCCceEEcCCCcCCc-----CChhhhCCC-ccceEEccCCcCCc
Q 028942 72 --IGSL-RNLVLLNVSNNKLKSLPE-----SIGS-CYSLEELQANDNLIGE-----LPASICNLI-HLKSLCLNNNNIGQ 136 (201)
Q Consensus 72 --~~~~-~~L~~L~l~~~~~~~~~~-----~~~~-~~~L~~L~l~~n~i~~-----~~~~~~~~~-~L~~L~l~~~~l~~ 136 (201)
+... ++|++|++++|.+...+. .+.. +.+|+.|++++|.++. ++..+...+ .|+.|++++|.++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 4444 688888888888775432 1233 3578888888888773 333445554 78888888888865
Q ss_pred cChh----hhhcC-ccCCeEecccCCCChhh
Q 028942 137 IPAN----LLKDC-KALQNISLHNNPISMDQ 162 (201)
Q Consensus 137 ~~~~----~~~~~-~~L~~l~l~~n~l~~~~ 162 (201)
.... .+..+ ++|+.|++++|.++..+
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 5542 33444 48888888888877643
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.59 E-value=3.6e-14 Score=115.73 Aligned_cols=96 Identities=39% Similarity=0.515 Sum_probs=46.6
Q ss_pred CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCC
Q 028942 8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNK 87 (201)
Q Consensus 8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 87 (201)
+|+.|++++|.++.+|. .+++|+.|++++|.++.+|. .+++|++|++++|.++.+|. .+.+|++|++++|.
T Consensus 62 ~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~ 132 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ 132 (622)
T ss_dssp TCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC
T ss_pred CCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC
Confidence 45555555555554444 23455555555555554443 34455555555555554433 23444455555554
Q ss_pred CCcCcccccCCCCCceEEcCCCcCCcCC
Q 028942 88 LKSLPESIGSCYSLEELQANDNLIGELP 115 (201)
Q Consensus 88 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 115 (201)
+..+|.. +++|+.|++++|.++.++
T Consensus 133 l~~lp~~---l~~L~~L~Ls~N~l~~l~ 157 (622)
T 3g06_A 133 LTSLPVL---PPGLQELSVSDNQLASLP 157 (622)
T ss_dssp CSCCCCC---CTTCCEEECCSSCCSCCC
T ss_pred CCcCCCC---CCCCCEEECcCCcCCCcC
Confidence 4444332 244555555555554443
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=6e-14 Score=96.97 Aligned_cols=129 Identities=25% Similarity=0.418 Sum_probs=110.4
Q ss_pred CccEEecCCCcCcccCccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEeeC
Q 028942 8 NIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSN 85 (201)
Q Consensus 8 ~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 85 (201)
..+.++++++.++.+|..+. ++++.+++++|.++.++.. +..+++|++|++++|.++.+++. +..+.+|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35678999999999886554 6999999999999988654 57899999999999999988654 57899999999999
Q ss_pred CCCCcCcc-cccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCcCCccC
Q 028942 86 NKLKSLPE-SIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIP 138 (201)
Q Consensus 86 ~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~ 138 (201)
|.+..++. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+....
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99998865 467889999999999999988765 577899999999999985443
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=8e-14 Score=95.82 Aligned_cols=106 Identities=27% Similarity=0.402 Sum_probs=79.3
Q ss_pred CCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCC
Q 028942 55 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNN 132 (201)
Q Consensus 55 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~ 132 (201)
.+.++++++.++.+|..+ ..++++|++++|.+..+ +..+..+++|+.|++++|.++.++.. +..+++|+.|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456677777777666544 25677777777777766 44567777888888888888777654 467788888888888
Q ss_pred cCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 133 NIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 133 ~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
.+..++...+..+++|+.|++.+|++.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 888888777788888888999888888764
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=6.7e-15 Score=116.06 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=45.2
Q ss_pred CCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCcCC-hh----hhC-CCccceEEccCCcCC-----ccChh
Q 028942 77 NLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGELP-AS----ICN-LIHLKSLCLNNNNIG-----QIPAN 140 (201)
Q Consensus 77 ~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~~-~~----~~~-~~~L~~L~l~~~~l~-----~~~~~ 140 (201)
+|++|++++|.+.. ++..+..+++|+.|++++|.++... .. +.. .+.|+.|++++|.++ .++.
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~- 392 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA- 392 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-
Confidence 45555555554442 2233344566666666666555321 11 111 446666677666665 2332
Q ss_pred hhhcCccCCeEecccCCCChhhh
Q 028942 141 LLKDCKALQNISLHNNPISMDQF 163 (201)
Q Consensus 141 ~~~~~~~L~~l~l~~n~l~~~~~ 163 (201)
.+..+++|++|++++|+++..+.
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~~~~ 415 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGDAGI 415 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCHHHH
T ss_pred HHHhCCCccEEECCCCCCCHHHH
Confidence 24556677777777777665543
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=8e-16 Score=108.40 Aligned_cols=120 Identities=25% Similarity=0.360 Sum_probs=106.2
Q ss_pred CCccCchhhhCcCCCCEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcCcccccCCCCCceEEcCCCcCCcCChhhhC
Q 028942 41 RITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 120 (201)
Q Consensus 41 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 120 (201)
.++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+..+++|+.|++++|.++.++ .+..
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 45566678899999999999999999988 888899999999999999999887777899999999999999887 5778
Q ss_pred CCccceEEccCCcCCccCh-hhhhcCccCCeEecccCCCChhh
Q 028942 121 LIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 121 ~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
++.|+.|++++|.+..++. ..+..+++|+++++.+|++.+..
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 8999999999999988765 45789999999999999987653
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=1.1e-13 Score=95.46 Aligned_cols=105 Identities=27% Similarity=0.386 Sum_probs=80.5
Q ss_pred CEEEecCCcCcccchhhhcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCChh-hhCCCccceEEccCCc
Q 028942 56 ERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNN 133 (201)
Q Consensus 56 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~~~ 133 (201)
+.++++++.+..+|..+. .++++|++++|.+..+ |..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 566777777777766443 6777788888877766 44567778888888888888877654 4678888888888888
Q ss_pred CCccChhhhhcCccCCeEecccCCCChhh
Q 028942 134 IGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 134 l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
+..++...+..+++|+.|++.+|++.+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 88888777788888999999999888764
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.48 E-value=4.8e-14 Score=111.18 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=78.0
Q ss_pred CccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCccC-----chhh-hCcCCCCEEEecCCcCcc-----cchh
Q 028942 8 NIQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRITSL-----PDEL-GQLVRLERLSILGNMLTC-----LPET 71 (201)
Q Consensus 8 ~L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~~~-----~~~~-~~l~~L~~L~l~~~~~~~-----~~~~ 71 (201)
+|++|++++|.++. ++..+..+++|+.+++++|.++.. ...+ ..++.|++|++++|.++. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 44444444444442 233344455555555555554421 1111 134555555555555553 3444
Q ss_pred hhcCCCCCEEEeeCCCCCcC-----cccc-cCCCCCceEEcCCCcCCc-----CChhhhCCCccceEEccCCcCCccChh
Q 028942 72 IGSLRNLVLLNVSNNKLKSL-----PESI-GSCYSLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQIPAN 140 (201)
Q Consensus 72 ~~~~~~L~~L~l~~~~~~~~-----~~~~-~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~ 140 (201)
+..+++|++|++++|.+... ...+ ...++|+.|++++|.++. ++..+..++.|+.|++++|.++.....
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 44556666666666655421 1111 122466666666666653 234455566777777777776443221
Q ss_pred hhh-----cCccCCeEecccCCCCh
Q 028942 141 LLK-----DCKALQNISLHNNPISM 160 (201)
Q Consensus 141 ~~~-----~~~~L~~l~l~~n~l~~ 160 (201)
.+. .+++|+.|++++|.++.
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHHHcCCCCceEEEECCCCCCCh
Confidence 111 15577777777777764
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=1.5e-13 Score=104.09 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=57.3
Q ss_pred CCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCCh-hhhCCCccc-eEEccCCcCCccChhhhhcCccCCeE
Q 028942 75 LRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLK-SLCLNNNNIGQIPANLLKDCKALQNI 151 (201)
Q Consensus 75 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~l 151 (201)
+.+|+.+++.+|.+..++. .|..+.+|+.+.+..| ++.++. ++..+.+|+ .+.+.. .+..++..+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 5677777777777776654 4666777777777776 665543 466677777 777766 6677777677777777777
Q ss_pred ecccCCCC
Q 028942 152 SLHNNPIS 159 (201)
Q Consensus 152 ~l~~n~l~ 159 (201)
++.+|.+.
T Consensus 303 ~l~~n~i~ 310 (329)
T 3sb4_A 303 LATGDKIT 310 (329)
T ss_dssp EECSSCCC
T ss_pred EeCCCccC
Confidence 77666655
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=1.3e-12 Score=90.15 Aligned_cols=102 Identities=25% Similarity=0.393 Sum_probs=55.2
Q ss_pred cEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEeeCCC
Q 028942 10 QRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSNNK 87 (201)
Q Consensus 10 ~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 87 (201)
+.++++++.+..+|..+. ++|+.|++++|.++.+ |..+..+++|++|++++|.++.+|+. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 345566666655555443 4556666666665554 33445555566666666555555443 3455555555555555
Q ss_pred CCcCccc-ccCCCCCceEEcCCCcCCc
Q 028942 88 LKSLPES-IGSCYSLEELQANDNLIGE 113 (201)
Q Consensus 88 ~~~~~~~-~~~~~~L~~L~l~~n~i~~ 113 (201)
+..++.. +..+++|+.|++++|++..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 5555432 4445555555555555543
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=1.2e-12 Score=89.97 Aligned_cols=102 Identities=27% Similarity=0.410 Sum_probs=60.7
Q ss_pred ccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccchh-hhcCCCCCEEEeeCC
Q 028942 9 IQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSNN 86 (201)
Q Consensus 9 L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 86 (201)
.+.++++++.++.+|..+. ++++.|++++|.++.+ |..+..+++|++|++++|.++.+++. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3556666666666665442 5666666666666655 33455666666666666666665443 355566666666666
Q ss_pred CCCcCcc-cccCCCCCceEEcCCCcCC
Q 028942 87 KLKSLPE-SIGSCYSLEELQANDNLIG 112 (201)
Q Consensus 87 ~~~~~~~-~~~~~~~L~~L~l~~n~i~ 112 (201)
.+..++. .+..+++|+.|++++|+++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6665544 3455566666666666554
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=9.5e-14 Score=106.82 Aligned_cols=163 Identities=20% Similarity=0.245 Sum_probs=118.9
Q ss_pred CCCccEEecCCCcCcc-----cCccccC-CCCCcEEeccCCCCccC-chh-hhCcCCCCEEEecCCcCcccc-----hhh
Q 028942 6 LINIQRLVLDDNHIER-----LPVNLGK-LQSLKVMTLDGNRITSL-PDE-LGQLVRLERLSILGNMLTCLP-----ETI 72 (201)
Q Consensus 6 l~~L~~L~l~~~~l~~-----l~~~~~~-l~~L~~l~l~~~~l~~~-~~~-~~~l~~L~~L~l~~~~~~~~~-----~~~ 72 (201)
++.|+.|++++|.++. +...+.. .++|+.|++++|.++.. ... ...+.+++.|++++|.++..+ ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3578899999999874 2222332 36899999999998732 112 234567899999999987532 222
Q ss_pred -hcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCcC-----ChhhhCCCccceEEccCCcCCccCh--
Q 028942 73 -GSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGEL-----PASICNLIHLKSLCLNNNNIGQIPA-- 139 (201)
Q Consensus 73 -~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~-- 139 (201)
...++|++|++++|.+.. ++..+...++|+.|++++|.+++. ...+...+.|+.|++++|.++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 245789999999998873 344557788999999999998743 3456677889999999999965432
Q ss_pred --hhhhcCccCCeEecccCCCChhhhccccC
Q 028942 140 --NLLKDCKALQNISLHNNPISMDQFQQMEG 168 (201)
Q Consensus 140 --~~~~~~~~L~~l~l~~n~l~~~~~~~l~~ 168 (201)
..+..+++|++|++++|.|+..+...+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 23556789999999999998776654433
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=8.2e-13 Score=100.85 Aligned_cols=148 Identities=20% Similarity=0.266 Sum_probs=109.7
Q ss_pred ccccCCCccEEecCCCcCc-ccC-ccccCCCCCcE-EeccCCCCccCc-hhhhCcCCCCEEEecCCcCcccc--------
Q 028942 2 EISKLINIQRLVLDDNHIE-RLP-VNLGKLQSLKV-MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLP-------- 69 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~-~l~-~~~~~l~~L~~-l~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~-------- 69 (201)
.|.++++|++|++++|.+. .++ ..|..++++.. +.+.+|.+..++ ..+..+++|++|++++|.+..++
T Consensus 49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 128 (350)
T 4ay9_X 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128 (350)
T ss_dssp SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS
T ss_pred HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccc
Confidence 4788999999999999875 454 35777877765 455667888774 45677888888888877665432
Q ss_pred -----------------h-hhhcC-CCCCEEEeeCCCCCcCcccccCCCCCceEEcCC-CcCCcCCh-hhhCCCccceEE
Q 028942 70 -----------------E-TIGSL-RNLVLLNVSNNKLKSLPESIGSCYSLEELQAND-NLIGELPA-SICNLIHLKSLC 128 (201)
Q Consensus 70 -----------------~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~-~~~~~~~L~~L~ 128 (201)
. .+..+ ..+++|++++|.++.++.......+++.+++.+ |.++.+|. .+..+++|+.|+
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 1 12222 357788999999998887777788899999974 68888885 568889999999
Q ss_pred ccCCcCCccChhhhhcCccCC
Q 028942 129 LNNNNIGQIPANLLKDCKALQ 149 (201)
Q Consensus 129 l~~~~l~~~~~~~~~~~~~L~ 149 (201)
+++|.++.+|...+.++++|+
T Consensus 209 Ls~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 209 ISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp CTTSCCCCCCSSSCTTCCEEE
T ss_pred cCCCCcCccChhhhccchHhh
Confidence 999999998876554444433
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=3.7e-12 Score=96.42 Aligned_cols=100 Identities=17% Similarity=0.264 Sum_probs=87.9
Q ss_pred cCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCc-eEEcCCCcCCcCC-hhhhCCCccceE
Q 028942 52 LVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLE-ELQANDNLIGELP-ASICNLIHLKSL 127 (201)
Q Consensus 52 l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~-~L~l~~n~i~~~~-~~~~~~~~L~~L 127 (201)
+++|+++++++|.++.++. .|..+.+|+.+++..| +..++. .|..+.+|+ .+.+.. .++.++ .++..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 6789999999999999965 5788999999999998 777754 678899999 999988 788775 578899999999
Q ss_pred EccCCcCCccChhhhhcCccCCeEec
Q 028942 128 CLNNNNIGQIPANLLKDCKALQNISL 153 (201)
Q Consensus 128 ~l~~~~l~~~~~~~~~~~~~L~~l~l 153 (201)
++.++.+..++..+|.+|++|+.+..
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999999999999999998864
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=9.6e-12 Score=94.70 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=50.0
Q ss_pred EeccCC-CCccCchhhhCcCCCCEEEecC-CcCcccch-hhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCc
Q 028942 35 MTLDGN-RITSLPDELGQLVRLERLSILG-NMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNL 110 (201)
Q Consensus 35 l~l~~~-~l~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~ 110 (201)
++.+++ .++.+|. +..+.+|+.|++++ |.++.+++ .|..+.+|+.|+|++|.+..+++ .+..+++|+.|++++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344444 5555555 55555556666654 55555542 34555555555555555554432 34455555555555555
Q ss_pred CCcCChhhhCCCccceEEccCCcC
Q 028942 111 IGELPASICNLIHLKSLCLNNNNI 134 (201)
Q Consensus 111 i~~~~~~~~~~~~L~~L~l~~~~l 134 (201)
++.+|........|+.|++.+|.+
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cceeCHHHcccCCceEEEeeCCCc
Confidence 555443322222255555555554
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=100.23 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=111.9
Q ss_pred CCCccEEecCCCcCcc--cCccccCCCCCcEEeccCCCCccC-----chhh-hCcCCCCEEEecCCcCcc-----cchhh
Q 028942 6 LINIQRLVLDDNHIER--LPVNLGKLQSLKVMTLDGNRITSL-----PDEL-GQLVRLERLSILGNMLTC-----LPETI 72 (201)
Q Consensus 6 l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~l~l~~~~l~~~-----~~~~-~~l~~L~~L~l~~~~~~~-----~~~~~ 72 (201)
..+|++|++++|.++. +......+.+|+.|++++|.++.. ...+ ...+.|++|++++|.++. ++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3689999999999873 222334466899999999999732 2223 246789999999999874 34556
Q ss_pred hcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCcC-----ChhhhCCCccceEEccCCcCCccChhhh
Q 028942 73 GSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGEL-----PASICNLIHLKSLCLNNNNIGQIPANLL 142 (201)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 142 (201)
...++|++|++++|.+.. ++..+...+.|+.|++++|.++.. ...+...+.|++|++++|.++......+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 778899999999999873 345567778999999999999843 3445667899999999999966554434
Q ss_pred hcCc-----cCCeEe--cccCCCChh
Q 028942 143 KDCK-----ALQNIS--LHNNPISMD 161 (201)
Q Consensus 143 ~~~~-----~L~~l~--l~~n~l~~~ 161 (201)
.... .++.+. +..+.++..
T Consensus 260 ~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 260 RDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHCC------CEEECCCC----CHHH
T ss_pred HHHhcCCCccchhhHhhhcCCccCHH
Confidence 3332 266666 666666644
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=4.4e-11 Score=91.04 Aligned_cols=103 Identities=23% Similarity=0.236 Sum_probs=88.6
Q ss_pred cEEecCCC-cCcccCccccCCCCCcEEeccC-CCCccCc-hhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCEEEeeC
Q 028942 10 QRLVLDDN-HIERLPVNLGKLQSLKVMTLDG-NRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSN 85 (201)
Q Consensus 10 ~~L~l~~~-~l~~l~~~~~~l~~L~~l~l~~-~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 85 (201)
..++.+++ .++.+|. +..+.+|+.|++++ |.++.++ ..+..+++|+.|++++|.++.+++ .|..+++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35788887 8999999 99999999999996 9999886 568899999999999999998855 678899999999999
Q ss_pred CCCCcCcccccCCCCCceEEcCCCcCCc
Q 028942 86 NKLKSLPESIGSCYSLEELQANDNLIGE 113 (201)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 113 (201)
|.+..+|........|+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccC
Confidence 9999887755554459999999998873
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=1.9e-11 Score=99.17 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=85.0
Q ss_pred cCCCccEEecCCCcCcc-----cCccccCCCCCcEEeccCCCCc-----cCchhhhCcCCCCEEEecCCcCcccchhhhc
Q 028942 5 KLINIQRLVLDDNHIER-----LPVNLGKLQSLKVMTLDGNRIT-----SLPDELGQLVRLERLSILGNMLTCLPETIGS 74 (201)
Q Consensus 5 ~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~l~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 74 (201)
+|++|++|++++|.+.. ++..+..+++|+.|+++++.++ .++..+..+++|++|++++|.+..++..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 56777778887776543 2233455677888888777765 2333445677788888888777777666667
Q ss_pred CCCCCEEEeeCCCC---------------------------CcCcccccCCCCCceEEcCCCcCCc--CChhhhCCCccc
Q 028942 75 LRNLVLLNVSNNKL---------------------------KSLPESIGSCYSLEELQANDNLIGE--LPASICNLIHLK 125 (201)
Q Consensus 75 ~~~L~~L~l~~~~~---------------------------~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~ 125 (201)
+++|+.+++..... ..++..+..+++|+.|++++|.++. +...+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 77777777753211 1222333344555555555555432 112234555555
Q ss_pred eEEccCCcC-CccChhhhhcCccCCeEecc
Q 028942 126 SLCLNNNNI-GQIPANLLKDCKALQNISLH 154 (201)
Q Consensus 126 ~L~l~~~~l-~~~~~~~~~~~~~L~~l~l~ 154 (201)
.|+++ +.+ ......+...+++|++|++.
T Consensus 322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp EEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 55555 222 11122334556666777766
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.17 E-value=3.9e-11 Score=97.39 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=115.4
Q ss_pred ccCCCccEEecCCCcCc-----ccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecC----------------
Q 028942 4 SKLINIQRLVLDDNHIE-----RLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILG---------------- 62 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~---------------- 62 (201)
.++++|+.|++++|.+. .++..+..+++|+.|++++|.+..++..+..++.|++|+++.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 35678888999888876 234445678889999988888777776667777777777753
Q ss_pred -----------CcCcccchhhhcCCCCCEEEeeCCCCCc--CcccccCCCCCceEEcCCCcCC--cCChhhhCCCccceE
Q 028942 63 -----------NMLTCLPETIGSLRNLVLLNVSNNKLKS--LPESIGSCYSLEELQANDNLIG--ELPASICNLIHLKSL 127 (201)
Q Consensus 63 -----------~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L 127 (201)
+....+|..+..+++|++|++++|.+.. ++..+..+++|+.|++. +.++ .++.....+++|+.|
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEE
Confidence 2222345556678899999999998662 23446789999999998 4444 334445678899999
Q ss_pred EccC-----------CcCCccC-hhhhhcCccCCeEecccCCCChhhhcc
Q 028942 128 CLNN-----------NNIGQIP-ANLLKDCKALQNISLHNNPISMDQFQQ 165 (201)
Q Consensus 128 ~l~~-----------~~l~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~ 165 (201)
++++ +.++... ..+..++++|++|++..+.++...+..
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 9993 4554322 234677999999999889998765543
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.10 E-value=1.4e-09 Score=84.40 Aligned_cols=152 Identities=12% Similarity=0.188 Sum_probs=79.1
Q ss_pred ccccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccc-----------
Q 028942 2 EISKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP----------- 69 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~----------- 69 (201)
.|.+|.+|+.+.+.+|.++.++.....+.+|+.+.+..+ +..+ ..+|..+.+|+.+.+..+ ++.++
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~ 252 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITT 252 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSE
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccE
Confidence 356677777777777766666444333466666666533 4444 234556666666666542 22222
Q ss_pred ------------hhhhcCCCCCEEEeeCCCCC-----cCc-ccccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEcc
Q 028942 70 ------------ETIGSLRNLVLLNVSNNKLK-----SLP-ESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLN 130 (201)
Q Consensus 70 ------------~~~~~~~~L~~L~l~~~~~~-----~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~ 130 (201)
..|..+.+|+.+.+.++.+. .++ ..+..|++|+.+.+.. .++.++ .++..+.+|+.+.+.
T Consensus 253 i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 253 VKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred EEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 23344445555555444332 222 2344555555555542 244443 234555566666663
Q ss_pred CCcCCccChhhhhcCccCCeEecccCCC
Q 028942 131 NNNIGQIPANLLKDCKALQNISLHNNPI 158 (201)
Q Consensus 131 ~~~l~~~~~~~~~~~~~L~~l~l~~n~l 158 (201)
. .+..+...+|.+| +|+.+.+.+|.+
T Consensus 332 ~-~l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 332 A-NVTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp T-TCCEECTTSSSSS-CCCEEEECCSSC
T ss_pred c-cccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 2 3555555556666 666666665544
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=1.6e-09 Score=84.15 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=27.9
Q ss_pred cccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCcccc-hhhhcCCCCCEEEeeC
Q 028942 25 NLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSN 85 (201)
Q Consensus 25 ~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 85 (201)
.|..+.+|+.+.+..+.++.++.....+..|+.+.+..+ ++.++ ..|..+.+|+.+.+..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 344455555555555555544433323444555555422 44442 2344455555555543
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.03 E-value=6.8e-11 Score=95.95 Aligned_cols=56 Identities=21% Similarity=0.333 Sum_probs=28.9
Q ss_pred CCCCCceEEcCCCcCCc--CChhhhCCCccceEEccCCcCC-ccChhhhhcCccCCeEec
Q 028942 97 SCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISL 153 (201)
Q Consensus 97 ~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~l~l 153 (201)
.+++|+.|++++|.++. +...+..+++|+.|++++| +. .....+...+++|++|++
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 34566666666665442 2222445566666666655 31 111223344666676666
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.99 E-value=2e-10 Score=93.15 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=9.3
Q ss_pred cCccCCeEecccCCCCh
Q 028942 144 DCKALQNISLHNNPISM 160 (201)
Q Consensus 144 ~~~~L~~l~l~~n~l~~ 160 (201)
.+++|++|++.+|.++.
T Consensus 287 ~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHTTCCEEECTTCCCCH
T ss_pred hhCCCCEEEccCCCCCH
Confidence 34555666665555543
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.89 E-value=1.9e-09 Score=74.82 Aligned_cols=115 Identities=16% Similarity=0.186 Sum_probs=76.1
Q ss_pred hhhCcCCCCEEEecCC-cCcc-----cchhhhcCCCCCEEEeeCCCCCc-----CcccccCCCCCceEEcCCCcCCc---
Q 028942 48 ELGQLVRLERLSILGN-MLTC-----LPETIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGE--- 113 (201)
Q Consensus 48 ~~~~l~~L~~L~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~--- 113 (201)
.+...+.|++|++++| .+.. +...+...++|++|++++|.+.. +...+...+.|+.|++++|.+++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666777777776 5552 23444555677777777777662 33444556678888888887763
Q ss_pred --CChhhhCCCccceEEc--cCCcCCccC----hhhhhcCccCCeEecccCCCChhh
Q 028942 114 --LPASICNLIHLKSLCL--NNNNIGQIP----ANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 114 --~~~~~~~~~~L~~L~l--~~~~l~~~~----~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
+...+...+.|++|++ ++|.++... ...+...++|++|++++|.+...+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 3445666778888888 778885432 234566788999999999887654
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=9.7e-09 Score=78.57 Aligned_cols=162 Identities=19% Similarity=0.167 Sum_probs=107.5
Q ss_pred ccCCCccEEecCCCcCc----------ccCccccCCCCCcEEeccCCCCccCchhhhCcCCCCEEEecCCcCccc-chhh
Q 028942 4 SKLINIQRLVLDDNHIE----------RLPVNLGKLQSLKVMTLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETI 72 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~----------~l~~~~~~l~~L~~l~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~ 72 (201)
..+++|+.|.+.+.... .+...+..+++|+.|.++++.-..++. + .+++|+.|++..|.+..- ...+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 45678888888654321 244556778999999998874223333 3 378899999998876532 1223
Q ss_pred h--cCCCCCEEEeeCC--C------CCcCcccc--cCCCCCceEEcCCCcCCcC-Chhh---hCCCccceEEccCCcCCc
Q 028942 73 G--SLRNLVLLNVSNN--K------LKSLPESI--GSCYSLEELQANDNLIGEL-PASI---CNLIHLKSLCLNNNNIGQ 136 (201)
Q Consensus 73 ~--~~~~L~~L~l~~~--~------~~~~~~~~--~~~~~L~~L~l~~n~i~~~-~~~~---~~~~~L~~L~l~~~~l~~ 136 (201)
. .+++|+.|++..+ . +..+...+ ..+++|+.|++.+|.++.- ...+ ..++.|++|+++.|.++.
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 2 6789999998632 1 11222222 3578999999999887632 1222 357789999999998855
Q ss_pred cCh-hh---hhcCccCCeEecccCCCChhhhcccc
Q 028942 137 IPA-NL---LKDCKALQNISLHNNPISMDQFQQME 167 (201)
Q Consensus 137 ~~~-~~---~~~~~~L~~l~l~~n~l~~~~~~~l~ 167 (201)
... .+ +..+++|+.|++.+|.|+....+.+.
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 322 11 24578999999999999877655443
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.87 E-value=5.2e-09 Score=72.65 Aligned_cols=114 Identities=21% Similarity=0.224 Sum_probs=89.9
Q ss_pred CccccCCCCCcEEeccCC-CCc-----cCchhhhCcCCCCEEEecCCcCcc-----cchhhhcCCCCCEEEeeCCCCCc-
Q 028942 23 PVNLGKLQSLKVMTLDGN-RIT-----SLPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKS- 90 (201)
Q Consensus 23 ~~~~~~l~~L~~l~l~~~-~l~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~- 90 (201)
...+...+.|+.|++++| .+. .+...+...+.|++|++++|.+.. +...+...++|++|++++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 334566789999999999 887 345566778899999999999874 34556677889999999999883
Q ss_pred ----CcccccCCCCCceEEc--CCCcCCc-----CChhhhCCCccceEEccCCcCCc
Q 028942 91 ----LPESIGSCYSLEELQA--NDNLIGE-----LPASICNLIHLKSLCLNNNNIGQ 136 (201)
Q Consensus 91 ----~~~~~~~~~~L~~L~l--~~n~i~~-----~~~~~~~~~~L~~L~l~~~~l~~ 136 (201)
+...+...+.|+.|++ ++|.++. +...+...+.|+.|++++|.++.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 4556777889999999 8898874 34556677899999999998843
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=1e-07 Score=72.85 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=100.4
Q ss_pred ccCCCccEEecCCCcCcccCccccCCCCCcEEeccCCCCccC-chhh--hCcCCCCEEEecCC--c------Ccccchhh
Q 028942 4 SKLINIQRLVLDDNHIERLPVNLGKLQSLKVMTLDGNRITSL-PDEL--GQLVRLERLSILGN--M------LTCLPETI 72 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~l~l~~~~l~~~-~~~~--~~l~~L~~L~l~~~--~------~~~~~~~~ 72 (201)
..+++|+.|.++++.-..++. +. +++|+.|.+..+.++.- ...+ ..+++|+.|+++.+ . +..+.+.+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 456899999998873224444 33 88999999998887621 1223 36899999998532 1 21222222
Q ss_pred --hcCCCCCEEEeeCCCCCc-Ccccc---cCCCCCceEEcCCCcCCcC-----ChhhhCCCccceEEccCCcCCccChhh
Q 028942 73 --GSLRNLVLLNVSNNKLKS-LPESI---GSCYSLEELQANDNLIGEL-----PASICNLIHLKSLCLNNNNIGQIPANL 141 (201)
Q Consensus 73 --~~~~~L~~L~l~~~~~~~-~~~~~---~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~ 141 (201)
..+++|++|++.+|.+.. .+..+ ..+++|+.|+++.|.++.. ...+..+++|+.|++++|.++......
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence 246899999999998762 11111 3578999999999988752 333456789999999999886543332
Q ss_pred hhc-CccCCeEecccCC
Q 028942 142 LKD-CKALQNISLHNNP 157 (201)
Q Consensus 142 ~~~-~~~L~~l~l~~n~ 157 (201)
+.. + ...++++.+.
T Consensus 327 l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC--CSEEECCSBC
T ss_pred HHHHc--CCEEEecCCc
Confidence 332 3 3567887776
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.34 E-value=9.7e-06 Score=62.19 Aligned_cols=127 Identities=23% Similarity=0.352 Sum_probs=81.5
Q ss_pred ccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccc-hhhhcCCCCCEEEeeCCCCCcCc-ccccCCCCCc
Q 028942 26 LGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLE 102 (201)
Q Consensus 26 ~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~ 102 (201)
+..+..++.+.+..+ +..+ ..++..+..|+.+.+..+ ++.++ ..+..+.+++.+.+..+ +..++ ..+..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 344455555555433 2322 234556677777777654 55553 34556677777777543 44443 3566778888
Q ss_pred eEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccC
Q 028942 103 ELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 156 (201)
Q Consensus 103 ~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n 156 (201)
.+.+..+.++.++ .++..+.+|+.+.+.. .+..+...+|.+|.+|+.+.+..+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc
Confidence 8888777777665 3567778888888853 377777777888888888877654
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=3.4e-07 Score=66.93 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=28.3
Q ss_pred CCCCceEEcCCCcCCcCC---hhhhCCCccceEEccCCcCCccCh-hhhhcCccCCeEecccCCCC
Q 028942 98 CYSLEELQANDNLIGELP---ASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 98 ~~~L~~L~l~~n~i~~~~---~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~n~l~ 159 (201)
++.|+.|++++|.++.++ ..+..+++|+.|+|++|.+..+.. ..+..+ +|++|++.+|++.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 445555555555554332 233445555555555555544321 112222 5555555555554
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=3.3e-05 Score=59.60 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=51.0
Q ss_pred hhcCCCCCEEEeeCCCCCcCc-ccccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCC
Q 028942 72 IGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ 149 (201)
Q Consensus 72 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 149 (201)
+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ ++.+. .++..+.+|+.+.+..+ +..+...+|.+|.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 445566666666543 44443 34566677777777543 55553 35666777777777554 6666666677777777
Q ss_pred eEecccC
Q 028942 150 NISLHNN 156 (201)
Q Consensus 150 ~l~l~~n 156 (201)
.+.+..+
T Consensus 370 ~i~lp~~ 376 (394)
T 4fs7_A 370 KVELPKR 376 (394)
T ss_dssp EEEEEGG
T ss_pred EEEECCC
Confidence 7777543
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.13 E-value=5.7e-05 Score=58.30 Aligned_cols=120 Identities=16% Similarity=0.359 Sum_probs=82.5
Q ss_pred hhhCcCCCCEEEecCCcCccc-chhhhcCCCCCEEEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCC-hhhhCCCcc
Q 028942 48 ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHL 124 (201)
Q Consensus 48 ~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L 124 (201)
++..+..|+.+.+..+- ..+ ...+..+..|+.+.+.. .+..++. .|..+.+|+.+.+..+ ++.+. .++..|.+|
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 46667778888776543 334 24566778888888863 4555643 5677889999998764 66664 467788899
Q ss_pred ceEEccCCcCCccChhhhhcCccCCeEecccCCCChhhhccccChhH
Q 028942 125 KSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEE 171 (201)
Q Consensus 125 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~l~~~~~ 171 (201)
+.+.+.. .+..+...+|.+|.+|+.+.+.++......+.....+..
T Consensus 337 ~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~ 382 (394)
T 4gt6_A 337 ERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQN 382 (394)
T ss_dssp CEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC--
T ss_pred CEEEECc-ccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCE
Confidence 9999854 488888888999999999999887654444333334433
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.11 E-value=1.8e-05 Score=61.13 Aligned_cols=58 Identities=3% Similarity=0.170 Sum_probs=32.2
Q ss_pred ccccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccCc-hhhhCcCCCCEEEec
Q 028942 2 EISKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSLP-DELGQLVRLERLSIL 61 (201)
Q Consensus 2 ~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~l~~L~~L~l~ 61 (201)
.|.+|.+|+.+.+.. .++.+ ..+|..+.+|+.+.+..+ ++.++ .++..+..|+.+.+.
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 356666777776653 35555 334666677777776543 44442 334555555554443
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.09 E-value=4.9e-06 Score=60.77 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=66.3
Q ss_pred EecCCCcCcccCc----cccCCCCCcEEeccCCCCccCc---hhhhCcCCCCEEEecCCcCcccchhhhcCC--CCCEEE
Q 028942 12 LVLDDNHIERLPV----NLGKLQSLKVMTLDGNRITSLP---DELGQLVRLERLSILGNMLTCLPETIGSLR--NLVLLN 82 (201)
Q Consensus 12 L~l~~~~l~~l~~----~~~~l~~L~~l~l~~~~l~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~ 82 (201)
++++.|....++. ....+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.+ ..+..+. +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence 4556664333322 2356789999999999988653 4566899999999999999876 2233333 899999
Q ss_pred eeCCCCCc-Cc-------ccccCCCCCceEEc
Q 028942 83 VSNNKLKS-LP-------ESIGSCYSLEELQA 106 (201)
Q Consensus 83 l~~~~~~~-~~-------~~~~~~~~L~~L~l 106 (201)
+.+|.+.. +| ..+..+++|+.|+-
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 99998863 33 23567788888873
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=4.6e-05 Score=58.42 Aligned_cols=140 Identities=15% Similarity=0.231 Sum_probs=102.4
Q ss_pred ccCCCccEEecCCCcCccc-CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCCcCcccch-hhhcCCCCCE
Q 028942 4 SKLINIQRLVLDDNHIERL-PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVL 80 (201)
Q Consensus 4 ~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~ 80 (201)
..+..++.+.+..+ +..+ ...|..+..|+.+.+..+ ++.+ ..++..+..++.+.+..+ +..++. .|..+.+|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 34555666655433 3333 445777889999998765 5555 345678889999998754 566643 5678899999
Q ss_pred EEeeCCCCCcCcc-cccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccC
Q 028942 81 LNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL 148 (201)
Q Consensus 81 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 148 (201)
+.+..+.+..++. .+..+.+|+.+.+..+ ++.+. .++..|.+|+.+.+..+ +..+...+|.+|..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 9999888887754 6788999999999754 67665 46788999999988544 778888788888643
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.01 E-value=0.00011 Score=56.59 Aligned_cols=96 Identities=22% Similarity=0.405 Sum_probs=59.1
Q ss_pred hcCCCCCEEEeeCCCCCcC-cccccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCcCCccChhhhhcCccCCe
Q 028942 73 GSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 150 (201)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 150 (201)
..+..|+.+.+..+.. .+ ...+..+..|+.+.+.. .++.++ .++..+.+|+.+.+.. .+..+...+|.+|.+|+.
T Consensus 262 ~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCE
T ss_pred eecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCE
Confidence 3444555555543322 22 22345566666666643 355554 3567788899888854 477788888999999999
Q ss_pred EecccC--CCChhhhccccChhH
Q 028942 151 ISLHNN--PISMDQFQQMEGFEE 171 (201)
Q Consensus 151 l~l~~n--~l~~~~~~~l~~~~~ 171 (201)
+.+..+ .|...++.....+..
T Consensus 339 i~ip~sv~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 339 IAIPSSVTKIPESAFSNCTALNN 361 (394)
T ss_dssp EEECTTCCBCCGGGGTTCTTCCE
T ss_pred EEECcccCEEhHhHhhCCCCCCE
Confidence 998765 345555655555443
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.01 E-value=1.3e-05 Score=52.12 Aligned_cols=59 Identities=25% Similarity=0.388 Sum_probs=47.0
Q ss_pred ceEEcCCCcCC--cCChhhhCCCccceEEccCCcCCccChhhhhcCccCCeEecccCCCChhh
Q 028942 102 EELQANDNLIG--ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 162 (201)
Q Consensus 102 ~~L~l~~n~i~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 162 (201)
..++-+++.++ .+|..+ ..+++.|+|++|.|+.++..+|..+++|+.|+|.+|++.|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 35666777777 777533 346889999999999998888888999999999999998875
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=7.6e-06 Score=55.84 Aligned_cols=84 Identities=8% Similarity=0.127 Sum_probs=40.7
Q ss_pred CCCEEEeeCCCCCcC-cccccCCCCCceEEcCCC-cCCcCC-hhhhC----CCccceEEccCCc-CCccChhhhhcCccC
Q 028942 77 NLVLLNVSNNKLKSL-PESIGSCYSLEELQANDN-LIGELP-ASICN----LIHLKSLCLNNNN-IGQIPANLLKDCKAL 148 (201)
Q Consensus 77 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n-~i~~~~-~~~~~----~~~L~~L~l~~~~-l~~~~~~~~~~~~~L 148 (201)
.|+.|+++++.++.. -..+..+++|+.|++++| .+++-. ..+.. ++.|++|++++|. |+...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 355555555544321 122345555666666555 244221 12222 2356666666664 444333334556666
Q ss_pred CeEecccCC-CCh
Q 028942 149 QNISLHNNP-ISM 160 (201)
Q Consensus 149 ~~l~l~~n~-l~~ 160 (201)
++|++.+++ ++.
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 666666653 443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.91 E-value=3.3e-05 Score=53.67 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=74.2
Q ss_pred hhCcCCCCEEEecCC-cCcc-----cchhhhcCCCCCEEEeeCCCCC-----cCcccccCCCCCceEEcCCCcCCc----
Q 028942 49 LGQLVRLERLSILGN-MLTC-----LPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGE---- 113 (201)
Q Consensus 49 ~~~l~~L~~L~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~n~i~~---- 113 (201)
+..-+.|++|+++++ .+.. +...+..-..|+.|+|++|.+. .+...+...+.|+.|+++.|.|+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344566788888774 5542 3345555677888888888877 234455667788888888888873
Q ss_pred -CChhhhCCCccceEEccCC---cCCcc----ChhhhhcCccCCeEecccCCCC
Q 028942 114 -LPASICNLIHLKSLCLNNN---NIGQI----PANLLKDCKALQNISLHNNPIS 159 (201)
Q Consensus 114 -~~~~~~~~~~L~~L~l~~~---~l~~~----~~~~~~~~~~L~~l~l~~n~l~ 159 (201)
+-..+...+.|+.|+++++ .++.. -..++...+.|..|++..+.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3344566677999999765 44321 1234667788999999877654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.83 E-value=7.7e-05 Score=51.83 Aligned_cols=108 Identities=22% Similarity=0.265 Sum_probs=71.9
Q ss_pred cCCCCCcEEeccCC-CCc-----cCchhhhCcCCCCEEEecCCcCcc-----cchhhhcCCCCCEEEeeCCCCC-----c
Q 028942 27 GKLQSLKVMTLDGN-RIT-----SLPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLK-----S 90 (201)
Q Consensus 27 ~~l~~L~~l~l~~~-~l~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~ 90 (201)
..-+.|+.|+++++ .+. .+..++.....|+.|++++|.+.. +...+..-..|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34467888888875 665 244556666778888888888763 3445556677888888888877 2
Q ss_pred CcccccCCCCCceEEcCCCc---CC-----cCChhhhCCCccceEEccCCcC
Q 028942 91 LPESIGSCYSLEELQANDNL---IG-----ELPASICNLIHLKSLCLNNNNI 134 (201)
Q Consensus 91 ~~~~~~~~~~L~~L~l~~n~---i~-----~~~~~~~~~~~L~~L~l~~~~l 134 (201)
+...+.....|+.|+++++. +. .+...+...+.|..|+++.+.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34455666778888887553 33 1233455667788888876655
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=4.9e-05 Score=51.82 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=59.2
Q ss_pred CcccccCCCCCceEEcCCCcCCcCC-hhhhCCCccceEEccCCc-CCccChhhhhc----CccCCeEecccCC-CChhhh
Q 028942 91 LPESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNN-IGQIPANLLKD----CKALQNISLHNNP-ISMDQF 163 (201)
Q Consensus 91 ~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~----~~~L~~l~l~~n~-l~~~~~ 163 (201)
+|........|+.+++++|.+++.. ..+..++.|+.|++++|. ++...-..+.. +++|++|+++++. |++.++
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 4443334457999999999988542 346789999999999996 55444333444 3589999999985 998887
Q ss_pred ccccChhHHH
Q 028942 164 QQMEGFEEFE 173 (201)
Q Consensus 164 ~~l~~~~~l~ 173 (201)
..+..++.|+
T Consensus 133 ~~L~~~~~L~ 142 (176)
T 3e4g_A 133 IALHHFRNLK 142 (176)
T ss_dssp HHGGGCTTCC
T ss_pred HHHhcCCCCC
Confidence 7765544443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.85 E-value=0.003 Score=40.79 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=23.0
Q ss_pred EEecCCCcCc--ccCccccCCCCCcEEeccCCCCccCchh-hhCcCCCCEEEecCCcC
Q 028942 11 RLVLDDNHIE--RLPVNLGKLQSLKVMTLDGNRITSLPDE-LGQLVRLERLSILGNML 65 (201)
Q Consensus 11 ~L~l~~~~l~--~l~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~ 65 (201)
.++-+++.++ .+|..+. .+++.|++++|.++.++.. +..++.|+.|++.+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3444444444 4443322 2344455555555444332 23344444444444443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.56 E-value=3.4 Score=24.88 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=21.3
Q ss_pred hhhCCCccceEEccCCcCCccChhhhhcCccCCeEeccc
Q 028942 117 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 155 (201)
Q Consensus 117 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~ 155 (201)
++..|..|+.+.+-. .++.+....|.+|.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 355555666655532 34555555566666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.34 E-value=9.9 Score=22.79 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=22.9
Q ss_pred cCccc-CccccCCCCCcEEeccCCCCccC-chhhhCcCCCCEEEecCC
Q 028942 18 HIERL-PVNLGKLQSLKVMTLDGNRITSL-PDELGQLVRLERLSILGN 63 (201)
Q Consensus 18 ~l~~l-~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~l~~L~~L~l~~~ 63 (201)
.++.+ ...|..+..|+.+.+..+ ++.+ ..+|..|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34444 334566666666666543 3333 234555666666655443
Done!