BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028943
MQLSTNFTASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTS
TINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLE
NIKGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDA
TSHKVFFTSRQHITLLNIFGI

High Scoring Gene Products

Symbol, full name Information P value
AT3G32930 protein from Arabidopsis thaliana 1.9e-53

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028943
        (201 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2096643 - symbol:AT3G32930 "AT3G32930" species...   553  1.9e-53   1


>TAIR|locus:2096643 [details] [associations]
            symbol:AT3G32930 "AT3G32930" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009941 "chloroplast envelope" evidence=IDA]
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009941 EMBL:AY050788
            EMBL:AY114056 EMBL:AP002053 IPI:IPI00530264 RefSeq:NP_566858.1
            UniGene:At.20934 STRING:Q9LHC4 PaxDb:Q9LHC4 PRIDE:Q9LHC4
            EnsemblPlants:AT3G32930.1 GeneID:823057 KEGG:ath:AT3G32930
            TAIR:At3g32930 eggNOG:NOG251212 HOGENOM:HOG000242440
            InParanoid:Q9LHC4 OMA:CQIRRES PhylomeDB:Q9LHC4
            ProtClustDB:CLSN2688960 ArrayExpress:Q9LHC4 Genevestigator:Q9LHC4
            Uniprot:Q9LHC4
        Length = 249

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 121/192 (63%), Positives = 146/192 (76%)

Query:     1 MQLSTN--FTASPFRSQNHL--FNNLSPTSFL-HKSLFLSRPTKTLQNLLFSNPKSSQKK 55
             MQLS     + S FRSQ+ +   +N +P+  L  KS+F    +K   + +F  PK    K
Sbjct:     1 MQLSLVQVSSVSNFRSQSTIPTLSNSNPSCLLLQKSIFPG--SKLTLHRIFRYPK----K 54

Query:    56 LLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGS--EGADL 113
             +   ST  ASLLE P+LWAGR+CV+YAL+KAG AGS++NP+VS L++GGV     +GADL
Sbjct:    55 ISNGST-RASLLETPILWAGRICVFYALVKAGFAGSKSNPIVSGLDTGGVDVEYDDGADL 113

Query:   114 GFSKWLENIKG-KPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLS 172
             GFSKWL+NIKG KPDK+AADKRKLVSKWHPTTKGTLRRNYR+PSK+EG RLLKAIASLLS
Sbjct:   114 GFSKWLQNIKGNKPDKDAADKRKLVSKWHPTTKGTLRRNYRIPSKAEGNRLLKAIASLLS 173

Query:   173 DDDHFTDATSHK 184
             DDDHF DATSHK
Sbjct:   174 DDDHFRDATSHK 185


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      201       201   0.00089  111 3  11 22  0.50    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  161 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.16u 0.09s 20.25t   Elapsed:  00:00:01
  Total cpu time:  20.16u 0.09s 20.25t   Elapsed:  00:00:01
  Start:  Thu May  9 23:26:17 2013   End:  Thu May  9 23:26:18 2013

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