BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028943
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OPO|A Chain A, The Structure Of Carnation Mottle Virus
pdb|1OPO|B Chain B, The Structure Of Carnation Mottle Virus
pdb|1OPO|C Chain C, The Structure Of Carnation Mottle Virus
Length = 348
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 27 FLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKA 86
F+ ++ LS PTKT + SN K S ++N + L+ ++ AG+ C+ +++
Sbjct: 232 FIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCI---IVRG 288
Query: 87 GLAGSQANP-LVSDLESGGVTGSEGADLGFSKWLENIKGK 125
+ G P L+ SG V + + + ++G+
Sbjct: 289 TVEGGFTKPTLIGPGISGDVDYESARPIAVCELVTQMEGQ 328
>pdb|3EW3|B Chain B, The 1:2 Complex Between A Nterminal Elongated Prolactin
And Cellular Domain Of The Rat Prolactin Receptor
pdb|3EW3|C Chain C, The 1:2 Complex Between A Nterminal Elongated Prolactin
And Cellular Domain Of The Rat Prolactin Receptor
Length = 221
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 119 LENIKGKPD---KEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDD 175
+++ GKP+ + DK W+P T G L NY + EG +
Sbjct: 1 MQSPPGKPEIHKCRSPDKETFTCWWNPGTDGGLPTNYSLTYSKEGEKTTYECPD------ 54
Query: 176 HFTDATSHKVFFTSRQHITLLNIFGI 201
+ + + FF S+Q+ ++ I+ I
Sbjct: 55 -YKTSGPNSCFF-SKQYTSIWKIYII 78
>pdb|3BE5|A Chain A, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE5|B Chain B, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE5|C Chain C, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE5|D Chain D, Crystal Structure Of Fite (Crystal Form 1), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|A Chain A, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|B Chain B, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|C Chain C, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
pdb|3BE6|D Chain D, Crystal Structure Of Fite (Crystal Form 2), A Group Iii
Periplasmic Siderophore Binding Protein
Length = 297
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 54 KKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGL----AGSQANPLVSDLESGGVTGSE 109
K L + I S+++A G++ V ++ G AG + PL+ + GG
Sbjct: 155 KATLDSQKITVSVIQA---NQGKINVXHSYHSLGRVLRDAGFRFPPLIESIPEGGRXDVS 211
Query: 110 G-------ADLGFSKWLENIKGKPDKEAADKRKLVSKW 140
AD F+ W + GKP E A K+ W
Sbjct: 212 AERLPELDADFVFATWRGDTGGKPQDELATXEKVXPGW 249
>pdb|1F6F|B Chain B, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
pdb|1F6F|C Chain C, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
Length = 210
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 124 GKPD---KEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDA 180
GKP+ + DK W+P T G L NY + EG + + +
Sbjct: 5 GKPEIHKCRSPDKETFTCWWNPGTDGGLPTNYSLTYSKEGEKTTYECPD-------YKTS 57
Query: 181 TSHKVFFTSRQHITLLNIFGI 201
+ FF S+Q+ ++ I+ I
Sbjct: 58 GPNSCFF-SKQYTSIWKIYII 77
>pdb|3NPZ|B Chain B, Prolactin Receptor (Prlr) Complexed With The Natural
Hormone (Prl)
pdb|3NPZ|C Chain C, Prolactin Receptor (Prlr) Complexed With The Natural
Hormone (Prl)
Length = 220
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 124 GKPD---KEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDA 180
GKP+ + DK W+P T G L NY + EG + + +
Sbjct: 5 GKPEIHKCRSPDKETFTCWWNPGTDGGLPTNYSLTYSKEGEKTTYECPD-------YKTS 57
Query: 181 TSHKVFFTSRQHITLLNIFGI 201
+ FF S+Q+ ++ I+ I
Sbjct: 58 GPNSCFF-SKQYTSIWKIYII 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,674,377
Number of Sequences: 62578
Number of extensions: 213362
Number of successful extensions: 526
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 6
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)