BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028943
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Q6X7|CAPSD_CARMS Capsid protein OS=Carnation mottle virus (isolate China/Shanghai)
GN=ORF4 PE=3 SV=1
Length = 348
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 27 FLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKA 86
F+ ++ LS PTKT + SN K S ++N + L+ ++ AG+ C+ +++
Sbjct: 232 FIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCI---IVRG 288
Query: 87 GLAGSQANP-LVSDLESGGVTGSEGADLGFSKWLENIKGK 125
+ G P L+ SG V + + + ++G+
Sbjct: 289 TVEGGFTKPTLIGPGISGDVDYESARPIAICELVTQMEGQ 328
>sp|P04383|CAPSD_CARMV Capsid protein OS=Carnation mottle virus GN=ORF4 PE=1 SV=1
Length = 348
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 27 FLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKA 86
F+ ++ LS PTKT + SN K S ++N + L+ ++ AG+ C+ +++
Sbjct: 232 FIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCI---IVRG 288
Query: 87 GLAGSQANP-LVSDLESGGVTGSEGADLGFSKWLENIKGK 125
+ G P L+ SG V + + + ++G+
Sbjct: 289 TVEGGFTKPTLIGPGISGDVDYESARPIAVCELVTQMEGQ 328
>sp|Q6FL71|AIM23_CANGA Altered inheritance of mitochondria protein 23, mitochondrial
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=AIM23 PE=3 SV=1
Length = 336
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 21/101 (20%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTG---SEGADLGFSKWLENIKGKPDKEAADK 133
+ + +++ + LA +A+ + S L+ G ++ DLG SKW+EN +
Sbjct: 192 IKISWSIKEDDLAKQKAHDITSMLKKGNKVNLYIADKEDLGGSKWMENFEN--------- 242
Query: 134 RKLVSKWHPTTKGTLRRNYRVPSKSEGRR-LLKAIASLLSD 173
V + P +K LR PS+ E R +++ + L+SD
Sbjct: 243 ---VEEEKPPSKKRLR-----PSEIERRESIIEQLKLLVSD 275
>sp|Q49W60|2NPD_STAS1 Probable nitronate monooxygenase OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP1854 PE=3 SV=1
Length = 355
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 75 GRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLE 120
G L V Y +++AG+AGS LV+ + + G G+ GA S LE
Sbjct: 9 GLLNVKYPIIQAGMAGSTTPELVATVSNAGGLGTIGAGYFSSDRLE 54
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,979,106
Number of Sequences: 539616
Number of extensions: 2761720
Number of successful extensions: 6103
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6100
Number of HSP's gapped (non-prelim): 9
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)