Query 028943
Match_columns 201
No_of_seqs 12 out of 14
Neff 1.6
Searched_HMMs 29240
Date Mon Mar 25 07:41:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebb_A Pterin-4-alpha-carbinol 84.7 0.83 2.8E-05 33.1 3.5 56 128-183 6-61 (101)
2 3jst_A Putative pterin-4-alpha 84.1 0.78 2.7E-05 32.9 3.1 55 127-181 8-63 (97)
3 2v6u_A Pterin-4A-carbinolamine 82.8 1.1 3.8E-05 32.6 3.5 57 127-183 11-68 (104)
4 1ru0_A DCOH-like protein dcohm 82.5 0.98 3.4E-05 32.9 3.1 56 127-182 12-70 (105)
5 3hxa_A Pterin-4-alpha-carbinol 76.6 1.9 6.5E-05 31.4 3.0 56 127-182 10-68 (104)
6 1usm_A DCOH, hepatocyte nuclea 73.9 1.9 6.3E-05 29.9 2.3 44 139-183 2-47 (80)
7 2ktl_A Tyrosyl-tRNA synthetase 37.2 15 0.0005 29.4 1.8 18 154-171 62-79 (164)
8 1hdj_A Human HSP40, HDJ-1; mol 26.8 57 0.002 21.0 3.1 36 132-174 23-58 (77)
9 2qt7_A Receptor-type tyrosine- 26.2 38 0.0013 25.1 2.4 24 156-179 15-39 (91)
10 2ywi_A Hypothetical conserved 23.1 58 0.002 22.6 2.7 53 139-191 129-193 (196)
11 2ctp_A DNAJ homolog subfamily 22.8 54 0.0019 21.2 2.4 36 132-174 27-62 (78)
12 4esb_A Transcriptional regulat 22.0 74 0.0025 22.4 3.1 36 131-168 53-88 (115)
13 3hhh_A Transcriptional regulat 21.6 71 0.0024 22.7 3.0 37 131-169 57-93 (116)
14 2cug_A Mkiaa0962 protein; DNAJ 21.0 64 0.0022 21.6 2.5 36 132-174 37-72 (88)
No 1
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=84.68 E-value=0.83 Score=33.14 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=43.5
Q ss_pred hhhhhhhhhhcccccCcccceeeccccCChHHHHHHHHHHHHhhcCCCccccccCc
Q 028943 128 KEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSH 183 (201)
Q Consensus 128 keaadkrKLvSKWhpTTKGTLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtSH 183 (201)
.|.+..-+-+..|.....+.|+|.|+.++-.++..++.+||.+-...||..|-+..
T Consensus 6 ~ei~~~L~~l~gW~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~ 61 (101)
T 2ebb_A 6 EEVQALLEKADGWKLADERWIVKKYRFQDYLQGIEFVRRIAAISENANHHPFISID 61 (101)
T ss_dssp HHHHHHHHTSTTCEEETTTEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHhhcCCCCeECCCCCEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEe
Confidence 34444444446788764435999999999999999999999999999998776543
No 2
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=84.09 E-value=0.78 Score=32.89 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=43.9
Q ss_pred chhhhhhhhhhcccccCccc-ceeeccccCChHHHHHHHHHHHHhhcCCCcccccc
Q 028943 127 DKEAADKRKLVSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDAT 181 (201)
Q Consensus 127 ~keaadkrKLvSKWhpTTKG-TLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAt 181 (201)
+.|.+..-+-...|.-...| .|+|.|+.++-.++..++.+||.+-..-||.-|-+
T Consensus 8 ~~ei~~~L~~l~gW~~~~~~~~l~r~f~f~~f~~a~~f~~~Va~~Ae~~~HHPdi~ 63 (97)
T 3jst_A 8 ESEMNEALRALDGWQKVDGREAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEWF 63 (97)
T ss_dssp HHHHHHHHHTSTTCEECTTSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHhhcCCCCeEeCCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 34455444445789887533 89999999999999999999999999999987755
No 3
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=82.76 E-value=1.1 Score=32.55 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=44.8
Q ss_pred chhhhhhhhhhcccccCccc-ceeeccccCChHHHHHHHHHHHHhhcCCCccccccCc
Q 028943 127 DKEAADKRKLVSKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSH 183 (201)
Q Consensus 127 ~keaadkrKLvSKWhpTTKG-TLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtSH 183 (201)
+.|.+..-+-+..|.....| .|+|.|+.++-.++..++.+||.+-...||.-|-+-.
T Consensus 11 ~~ei~~~L~~l~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~ 68 (104)
T 2v6u_A 11 SARLLQLHKTVPQWHLTDGHLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWYNV 68 (104)
T ss_dssp CHHHHHHHTTSTTSEECGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHHHhhcCCCCeEeCCcCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEe
Confidence 44555444445679876533 7999999999999999999999999999998776543
No 4
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=82.45 E-value=0.98 Score=32.88 Aligned_cols=56 Identities=7% Similarity=0.153 Sum_probs=44.0
Q ss_pred chhhhhhhhhh--cccccCccc-ceeeccccCChHHHHHHHHHHHHhhcCCCccccccC
Q 028943 127 DKEAADKRKLV--SKWHPTTKG-TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATS 182 (201)
Q Consensus 127 ~keaadkrKLv--SKWhpTTKG-TLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtS 182 (201)
+.|.+..-+-+ .-|.....+ .|+|.|+.++-.++..++.+||.+-...||.-|-+.
T Consensus 12 ~~ei~~~L~~l~~~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~ 70 (105)
T 1ru0_A 12 AEERDQLIPGLKAAGWSELSERDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFN 70 (105)
T ss_dssp HHHHHHHHHHHHHTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHHhCCCCCCeEECCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 44444444434 679876554 799999999999999999999999999999877543
No 5
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=76.56 E-value=1.9 Score=31.37 Aligned_cols=56 Identities=9% Similarity=0.159 Sum_probs=43.7
Q ss_pred chhhhhhhhhh--cccccCc-ccceeeccccCChHHHHHHHHHHHHhhcCCCccccccC
Q 028943 127 DKEAADKRKLV--SKWHPTT-KGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATS 182 (201)
Q Consensus 127 ~keaadkrKLv--SKWhpTT-KGTLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtS 182 (201)
+.|.+..-+-. ..|.-.. .+.|+|.|+.++-.++..++.+||.+-...+|.-|-+-
T Consensus 10 ~~ei~~~L~~L~~~gW~~~~~~~~l~r~f~F~~f~~a~~F~~~Va~~AE~~~HHPdi~~ 68 (104)
T 3hxa_A 10 AEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMSRVALQAEKLDHHPEWFN 68 (104)
T ss_dssp HHHHHHHSHHHHTTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHhhCCCCCCEEecCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 34444443333 6798764 35899999999999999999999999999999877553
No 6
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=73.92 E-value=1.9 Score=29.86 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=35.9
Q ss_pred ccccCccc--ceeeccccCChHHHHHHHHHHHHhhcCCCccccccCc
Q 028943 139 KWHPTTKG--TLRRNYRVPSKSEGRRLLKAIASLLSDDDHFTDATSH 183 (201)
Q Consensus 139 KWhpTTKG--TLrRnYRvpSk~EGrRlLKaIAslLSdDDhFvdAtSH 183 (201)
.|... .| .|+|.|+.++-.++..++.+||.+-...||.-|-+..
T Consensus 2 gW~~~-~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~ 47 (80)
T 1usm_A 2 DWEER-ENLKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVE 47 (80)
T ss_dssp CCEEC----CCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred CCeEe-CCccEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEe
Confidence 35543 34 7999999999999999999999999999998776543
No 7
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=37.23 E-value=15 Score=29.35 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=14.1
Q ss_pred cCChHHHHHHHHHHHHhh
Q 028943 154 VPSKSEGRRLLKAIASLL 171 (201)
Q Consensus 154 vpSk~EGrRlLKaIAslL 171 (201)
++||+|+||+++.=+--+
T Consensus 62 a~SKsEARRlI~qGGv~V 79 (164)
T 2ktl_A 62 VASKSEGQRIINNNGAYV 79 (164)
T ss_dssp CSTHHHHHHHHHHTCEEE
T ss_pred ccCHHHHHHHHHhCCEEE
Confidence 789999999997654444
No 8
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=26.78 E-value=57 Score=21.04 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=23.9
Q ss_pred hhhhhhcccccCcccceeeccccCChHHHHHHHHHHHHhhcCC
Q 028943 132 DKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDD 174 (201)
Q Consensus 132 dkrKLvSKWhpTTKGTLrRnYRvpSk~EGrRlLKaIAslLSdD 174 (201)
--|+|+.+|||-..+. +...|--+.|.+.-.+|+|.
T Consensus 23 ayr~l~~~~HPD~~~~-------~~~~~~f~~i~~Ay~~L~d~ 58 (77)
T 1hdj_A 23 AYRRQALRYHPDKNKE-------PGAEEKFKEIAEAYDVLSDP 58 (77)
T ss_dssp HHHHHHHTTCTTTCCC-------TTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHHCCH
Confidence 3578999999986542 33345555666666778775
No 9
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=26.16 E-value=38 Score=25.10 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHHhhcCC-Ccccc
Q 028943 156 SKSEGRRLLKAIASLLSDD-DHFTD 179 (201)
Q Consensus 156 Sk~EGrRlLKaIAslLSdD-DhFvd 179 (201)
|-.||.||+..+|.+|.=- -.|.|
T Consensus 15 s~~eG~~l~~~la~ll~l~~~~Ft~ 39 (91)
T 2qt7_A 15 SLAAGVKLLEILAEHVHMSSGSFIN 39 (91)
T ss_dssp CHHHHHHHHHHHHHHHTSCGGGEEE
T ss_pred CHHHHHHHHHHHHHHhcCCccceee
Confidence 7789999999999999753 44544
No 10
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=23.12 E-value=58 Score=22.64 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=35.8
Q ss_pred ccccCc-----ccceeeccccC-------ChHHHHHHHHHHHHhhcCCCccccccCccceeeecc
Q 028943 139 KWHPTT-----KGTLRRNYRVP-------SKSEGRRLLKAIASLLSDDDHFTDATSHKVFFTSRQ 191 (201)
Q Consensus 139 KWhpTT-----KGTLrRnYRvp-------Sk~EGrRlLKaIAslLSdDDhFvdAtSHKGCqIrre 191 (201)
..-||+ +|.++..+++. .......|.++|..+|....-=...+.-.||.|..+
T Consensus 129 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~ 193 (196)
T 2ywi_A 129 ACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWK 193 (196)
T ss_dssp CEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCCSCCCCCEEEECCCC
T ss_pred CCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCCCCCCCCCceeeeec
Confidence 445764 78887665432 122335688888888987766667777889999853
No 11
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.80 E-value=54 Score=21.20 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=22.7
Q ss_pred hhhhhhcccccCcccceeeccccCChHHHHHHHHHHHHhhcCC
Q 028943 132 DKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDD 174 (201)
Q Consensus 132 dkrKLvSKWhpTTKGTLrRnYRvpSk~EGrRlLKaIAslLSdD 174 (201)
.-|+|+.+|||-..+. +...|--..+.+.-.+|+|.
T Consensus 27 ayr~l~~~~HPDk~~~-------~~~~~~f~~i~~Ay~~L~d~ 62 (78)
T 2ctp_A 27 AYRRLALKFHPDKNHA-------PGATEAFKAIGTAYAVLSNP 62 (78)
T ss_dssp HHHHHHTTSCTTTCSS-------HHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHHCCH
Confidence 3578999999986532 22344445556666677764
No 12
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=22.04 E-value=74 Score=22.40 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=25.6
Q ss_pred hhhhhhhcccccCcccceeeccccCChHHHHHHHHHHH
Q 028943 131 ADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIA 168 (201)
Q Consensus 131 adkrKLvSKWhpTTKGTLrRnYRvpSk~EGrRlLKaIA 168 (201)
.+++=+.+.|.+...|--|+.|++ +++||..|.+..
T Consensus 53 e~~GlI~~~~~~~~~g~~rk~Y~L--T~~G~~~l~~~~ 88 (115)
T 4esb_A 53 QKEKLIEGTLKASSLGPKRKYYHI--TDKGLEQLEEFK 88 (115)
T ss_dssp HHTTSEEEEEEECTTSCEEEEEEE--CHHHHHHHHHHH
T ss_pred HHCCCeEEEeeecCCCCCcEEEEE--CHHHHHHHHHHH
Confidence 344455678888777878888987 567888776643
No 13
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=21.58 E-value=71 Score=22.66 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=25.2
Q ss_pred hhhhhhhcccccCcccceeeccccCChHHHHHHHHHHHH
Q 028943 131 ADKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIAS 169 (201)
Q Consensus 131 adkrKLvSKWhpTTKGTLrRnYRvpSk~EGrRlLKaIAs 169 (201)
.+++=+.+.|.+...|--|+-|++ +++|++.|++...
T Consensus 57 e~~GlI~~~~~~~~~g~~rk~Y~l--T~~G~~~l~~~~~ 93 (116)
T 3hhh_A 57 EKNQWVIAEKKPSEKGPMRKFYRL--TSSGEAELADFWQ 93 (116)
T ss_dssp HHTTSEEEEEEECC--CEEEEEEE--CHHHHHHHHHHHH
T ss_pred HHCCCEEEEeeecCCCCCceEEEE--CHHHHHHHHHHHH
Confidence 445556678988777877888987 5678888866443
No 14
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=21.02 E-value=64 Score=21.56 Aligned_cols=36 Identities=22% Similarity=0.483 Sum_probs=23.4
Q ss_pred hhhhhhcccccCcccceeeccccCChHHHHHHHHHHHHhhcCC
Q 028943 132 DKRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDD 174 (201)
Q Consensus 132 dkrKLvSKWhpTTKGTLrRnYRvpSk~EGrRlLKaIAslLSdD 174 (201)
.-|+|+.+|||-..+. +...|--..+++.-.+|+|.
T Consensus 37 ayr~l~~~~HPDk~~~-------~~~~~~f~~i~~Ay~~L~d~ 72 (88)
T 2cug_A 37 AYKKLAREWHPDKNKD-------PGAEDRFIQISKAYEILSNE 72 (88)
T ss_dssp HHHHHHHHSCTTTCCS-------TTHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHCcCCCCC-------hhHHHHHHHHHHHHHHHCCH
Confidence 3478999999986543 33445455566666677764
Done!