BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028944
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
Length = 170
Score = 231 bits (589), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 106/160 (66%), Positives = 133/160 (83%), Gaps = 2/160 (1%)
Query: 37 MATQEA--PKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEK 94
MATQ + P+S++DFTVKD + NDV LS ++GKVLL+VNVASKCG+T SNY E+N LYEK
Sbjct: 1 MATQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEK 60
Query: 95 YKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLK 154
YK+Q E+LAFPCNQF +EPG+N++I + CT FK+EFPIFDKIDVNG+NA+P+Y+FLK
Sbjct: 61 YKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLK 120
Query: 155 SEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194
K G GD I+WNF KFLVNK+G+VV+RY PTTSPL +E
Sbjct: 121 LGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLE 160
>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1
Length = 166
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 44 KSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVL 103
KSIY+F V G LS ++G LL+ NVAS+CG T+ Y+ LY KYK Q F VL
Sbjct: 3 KSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVL 62
Query: 104 AFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLG- 162
AFPCNQFAGQEPG+ E++E ACT FKA+FPI KIDVNG A P+Y+F+K+ G G
Sbjct: 63 AFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPLYEFMKATIPGLFGT 122
Query: 163 DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194
AIKWNFT FL+++ G VER++P S IE
Sbjct: 123 KAIKWNFTSFLIDRHGVPVERFSPGASVEDIE 154
>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant
Peroxidase From Trypanosoma Brucei
Length = 190
Score = 170 bits (431), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
Query: 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFE 101
A SI+DF V D +L ++G LL+ NVASKCG T+ Y+ LY KYK+Q F
Sbjct: 24 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFT 83
Query: 102 VLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFL 161
VLAFPCNQF GQEPG+ EEI+E CT FKAEFPI KI+VNG+NA P+Y+++K K G L
Sbjct: 84 VLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGIL 143
Query: 162 -GDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194
AIKWNFT FL++++G VER++P S IE
Sbjct: 144 KTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIE 177
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|3DWV|B Chain B, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
Length = 187
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/161 (53%), Positives = 108/161 (67%), Gaps = 2/161 (1%)
Query: 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFE 101
A SI+DF V D +L ++G LL+ NVASKCG T+ Y+ LY KYK+Q F
Sbjct: 22 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFT 81
Query: 102 VLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFL 161
VLAFP NQF GQEPG+ EEI+E CT FKAEFPI KI+VNG+NA P+Y+++K K G L
Sbjct: 82 VLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGIL 141
Query: 162 G-DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIPL 201
AIKWNFT FL++++G VER++P S IE IPL
Sbjct: 142 ATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEE-KLIPL 181
>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
Of Schistosoma Mansoni Phospholipid Glutathione
Peroxidase
Length = 169
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 109/157 (69%)
Query: 38 ATQEAPKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKN 97
++ ++ SIY+FTVKDI G DVSL YRG V L+VNVA K G T NY++L ++ +
Sbjct: 3 SSHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKSGATDKNYRQLQEMHTRLVG 62
Query: 98 QDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEK 157
+ +LAFPCNQF GQEP + EI++ + +F +F KI VNG +A +YKFLKS +
Sbjct: 63 KGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQ 122
Query: 158 GGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194
G L + IKWNF+KFLV+++G+ V+RY+PTT+P IE
Sbjct: 123 HGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIE 159
>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione
Peroxidase
Length = 169
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 109/157 (69%)
Query: 38 ATQEAPKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKN 97
++ ++ SIY+FTVKDI G DVSL YRG V L+VNVA K G T NY++L ++ +
Sbjct: 3 SSHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKXGATDKNYRQLQEMHTRLVG 62
Query: 98 QDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEK 157
+ +LAFPCNQF GQEP + EI++ + +F +F KI VNG +A +YKFLKS +
Sbjct: 63 KGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQ 122
Query: 158 GGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194
G L + IKWNF+KFLV+++G+ V+RY+PTT+P IE
Sbjct: 123 HGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIE 159
>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|2RM6|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Reduced Form
Length = 167
Score = 166 bits (419), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 104/151 (68%), Gaps = 1/151 (0%)
Query: 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104
SI+DF V D +L ++G LL+ NVASKCG T+ Y+ LY KYK+Q F VLA
Sbjct: 5 SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 64
Query: 105 FPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLG-D 163
FP NQF GQEPG+ EEI+E CT FKAEFPI KI+VNG+NA P+Y+++K K G L
Sbjct: 65 FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK 124
Query: 164 AIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194
AIKWNFT FL++++G VER++P S IE
Sbjct: 125 AIKWNFTSFLIDRDGVPVERFSPGASVKDIE 155
>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Phospholipid Hydroperoxide Glutathione
Peroxidase (Gpx4)
Length = 183
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 109/156 (69%), Gaps = 3/156 (1%)
Query: 41 EAPKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDF 100
+S+++F+ KDI G+ V+L YRG V +V NVAS+CG T+ NY +L L+ +Y
Sbjct: 22 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGL 81
Query: 101 EVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE-KG- 158
+LAFPCNQF QEPGSNEEI+E A + +F +F KI VNG +A P++K++K + KG
Sbjct: 82 RILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK 140
Query: 159 GFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194
G LG+AIKWNFTKFL++K G VV+RY P PL IE
Sbjct: 141 GILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIE 176
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
Length = 171
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 96/146 (65%), Gaps = 2/146 (1%)
Query: 46 IYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105
Y D +G +GKV+L+VNVASKCG T YKEL LY++YK++ F ++ F
Sbjct: 12 FYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFT-PQYKELEALYKRYKDEGFTIIGF 70
Query: 106 PCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLG-DA 164
PCNQF QEPGS+EEI + + FPI KIDVNG N P+YKFLKS+K G LG
Sbjct: 71 PCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRG 130
Query: 165 IKWNFTKFLVNKEGKVVERYAPTTSP 190
IKWNF KFLV+K+GKV ERY+ T P
Sbjct: 131 IKWNFEKFLVDKKGKVYERYSSLTKP 156
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 3/158 (1%)
Query: 39 TQEAPKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ 98
+ +S+++F+ KDI G+ V+L YRG V +V NVAS+ G T+ NY +L L+ +Y
Sbjct: 22 SMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC 81
Query: 99 DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE-K 157
+LAFPCNQF QEPGSNEEI+E A + +F +F KI VNG +A P++K++K + K
Sbjct: 82 GLRILAFPCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKIQPK 140
Query: 158 G-GFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194
G G LG+AIKWNFTKFL++K G VV+RY P PL IE
Sbjct: 141 GKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIE 178
>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7
pdb|2P31|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 7
Length = 181
Score = 133 bits (334), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 44 KSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVL 103
+ YDF +IRG VSL YRG V LVVNVAS+CG T +Y+ L L F VL
Sbjct: 27 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 86
Query: 104 AFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGD 163
AFPCNQF QEP SN+EI+ A + FP+F KI V G A P +K+L G
Sbjct: 87 AFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS----GK 142
Query: 164 AIKWNFTKFLVNKEGKVVERYAPTTS 189
WNF K+LV +GKVV + PT S
Sbjct: 143 EPTWNFWKYLVAPDGKVVGAWDPTVS 168
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 34 AKNMATQEAPKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYE 93
+N+ Q S Y F VKD +G VSL Y+GKV LVVNVAS C LT NY L L++
Sbjct: 15 TENLYFQSMINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHK 74
Query: 94 KYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFL 153
++ F VLAFPCNQF EP ++E++ A + FPIF KI + G P ++FL
Sbjct: 75 EFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFL 134
Query: 154 KSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAP 186
+WNF K+LVN EG+VV+ + P
Sbjct: 135 VDSS----KKEPRWNFWKYLVNPEGQVVKFWRP 163
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
Query: 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104
S Y F VKD +G VSL Y+GKV LVVNVAS C LT NY L L++++ F VLA
Sbjct: 17 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 76
Query: 105 FPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA 164
FPCNQF EP ++E++ A + FPIF KI + G P ++FL
Sbjct: 77 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 132
Query: 165 IKWNFTKFLVNKEGKVVERYAP 186
+WNF K+LVN EG+VV+ + P
Sbjct: 133 PRWNFWKYLVNPEGQVVKFWRP 154
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 25/168 (14%)
Query: 43 PKSIYDFTVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFE 101
P+++Y F+ + + G + +LS RGKVLL+ NVAS G T +Y ++N L + +
Sbjct: 9 PRTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLV 68
Query: 102 VLAFPCNQFAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLK-- 154
VL FPCNQF QE NEEI + F+ F +F+K +VNG+ A P++ FL+
Sbjct: 69 VLGFPCNQFGHQENAKNEEILNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREV 128
Query: 155 -----SEKGGFLGDA------------IKWNFTKFLVNKEGKVVERYA 185
+ + D + WNF KFLV +G V RY+
Sbjct: 129 LPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYS 176
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
pdb|2F8A|B Chain B, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
Length = 208
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 86/176 (48%), Gaps = 25/176 (14%)
Query: 44 KSIYDFTVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEV 102
+S+Y F+ + + G + VSL RGKVLL+ NVAS G T +Y ++N L + + V
Sbjct: 24 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVV 83
Query: 103 LAFPCNQFAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSEK 157
L FPCNQF QE NEEI + F+ F +F+K +VNG A P++ FL+
Sbjct: 84 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 143
Query: 158 GGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194
DA + WNF KFLV +G + RY+ + IE
Sbjct: 144 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIE 199
>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5
Length = 215
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 93/186 (50%), Gaps = 24/186 (12%)
Query: 33 SAKNMATQEAPKSIYDFTVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVL 91
S K ++ +IYD+ + N+ VS Y GK +L VNVA+ CGLT + Y ELN L
Sbjct: 22 SMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNAL 80
Query: 92 YEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNA 146
E+ K VL FPCNQF QEPG N+EI + F F +F+K DVNG+
Sbjct: 81 QEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKE 140
Query: 147 APIYKFLKS---EKGGFLG------------DAIKWNFTKFLVNKEGKVVERYA--PTTS 189
++ FLK LG I+WNF KFLV +G V R++ T S
Sbjct: 141 QKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVS 200
Query: 190 PLKIEV 195
+K ++
Sbjct: 201 SVKTDI 206
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 25/175 (14%)
Query: 44 KSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVL 103
KS YD + ++ G V + +RG+ +L+ NVAS CG T ++ +LN L ++ + VL
Sbjct: 26 KSFYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCRFPRR-LVVL 84
Query: 104 AFPCNQFAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLK---- 154
FPCNQF QE NEEI + ++ F + K +VNG+N P++ +LK
Sbjct: 85 GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 144
Query: 155 ---SEKGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194
+ + D + WNF KFL+ EG+ RY+ T + IE
Sbjct: 145 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIE 199
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 80/166 (48%), Gaps = 22/166 (13%)
Query: 45 SIYDFTVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVL 103
+IY++ I G + + Y GK +L VNVAS GLT Y ELN L E+ +L
Sbjct: 16 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVIL 74
Query: 104 AFPCNQFAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSE-- 156
FPCNQF QEPG N EI + F F +F+K DVNG+ Y FLK+
Sbjct: 75 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 134
Query: 157 -KGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTS 189
LG + I+WNF KFLV +G + R+ T+
Sbjct: 135 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTT 180
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEV 102
SI D +KD++GN SL+ +GKV+L+ ++ ++ L LY KY +Q FE+
Sbjct: 14 SIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEI 71
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 37 MATQEAPKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYK 96
M+ + S F+ DI G VSL+ +GK + + A+ CG + L L EKY
Sbjct: 1 MSLRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYA 60
Query: 97 NQDFEVLAFPCNQ 109
+D ++ C++
Sbjct: 61 GKDIHFVSLSCDK 73
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 33 SAKNMATQEAPKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLY 92
+A MA+ AP + D +D G LS +RGK LLV A+ C + L+ L
Sbjct: 29 AALTMAS--APLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQ 86
Query: 93 EKYKNQDFEVLAF 105
K +FEV+A
Sbjct: 87 GKLSGPNFEVVAI 99
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 48 DFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSN--YKELNVLYEKYKNQDFEVLAF 105
DFT+ G V+LS RGKV+++ AS CG+ + + E ++ + N DF ++
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGI 74
Query: 106 PCNQ 109
++
Sbjct: 75 DRDE 78
>pdb|1XVW|A Chain A, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis,
A 1-Cys Peroxiredoxin
pdb|1XVW|B Chain B, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis,
A 1-Cys Peroxiredoxin
Length = 160
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 48 DFTVKDIRGNDVSLSGYRGK--VLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104
DFT++D V+L GYRG VLLV + G+ Q +L +++N D LA
Sbjct: 17 DFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGIXQGELDQLRDHLPEFENDDSAALA 75
>pdb|1XXU|A Chain A, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
pdb|1XXU|B Chain B, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
pdb|1XXU|C Chain C, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
pdb|1XXU|D Chain D, Crystal Structure Of Ahpe From Mycrobacterium
Tuberculosis, A 1-Cys Peroxiredoxin
Length = 153
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 48 DFTVKDIRGNDVSLSGYRGK--VLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104
DFT++D V+L GYRG VLLV + G+ Q +L +++N D LA
Sbjct: 10 DFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALA 68
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 48 DFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104
+F + + G + SL+ YRGK++LV AS C + + L + + D VLA
Sbjct: 23 NFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLA 79
>pdb|2CVB|A Chain A, Crystal Structure Of A Thioredoxin-Like Protein From
Thermus Thermophilus Hb8
pdb|2YWO|A Chain A, Crystal Structure Of Reduced Thioredoxin-Like Protein
From Thermus Thermophilus Hb8
Length = 188
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 46 IYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ 98
+ D + D RG LS + +L VV + C + + EL L E+Y+ +
Sbjct: 13 LIDAELPDPRGGRYRLSQFHEPLLAVVFXCNHCPYVKGSIGELVALAERYRGK 65
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 53 DIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 109
D++GN VSL+ ++GK +LV + C + L Y +K++ F + ++
Sbjct: 16 DLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDR 72
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 26/127 (20%)
Query: 59 VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSN 118
V LS G V+ + AS CG + ++ N KYK + F+V+A N
Sbjct: 21 VKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAV------------N 68
Query: 119 EEIQEVACTMFKAEFPIFDKIDVNGKNAAP-IYKFLKSEKGGFLGDAIKWNFTKFLVNKE 177
+ + F A+ P + + K P +Y +K T FL+++
Sbjct: 69 LDAKTGDAXKFLAQVPAEFTVAFDPKGQTPRLY-------------GVKGXPTSFLIDRN 115
Query: 178 GKVVERY 184
GKV+ ++
Sbjct: 116 GKVLLQH 122
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 48 DFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104
+F ++D G + LS +GK + + + C + + + Y+ +K+Q E++A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 48 DFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104
+F ++D G + LS +GK + + + C + + + Y+ +K+Q E++A
Sbjct: 5 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVA 61
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 48 DFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104
+F ++D G + LS +GK + + + C + + + Y+ +K+Q E++A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVA 64
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 48 DFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104
+F ++D G + LS +GK + + + C + + + Y+ +K+Q E++A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVN 175
G + API S+ G + + WN T F+ N
Sbjct: 248 GPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 48 DFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104
+F ++D G + LS +GK + + + C + + + Y+ +K+Q E++A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVA 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,645,132
Number of Sequences: 62578
Number of extensions: 221620
Number of successful extensions: 494
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 45
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)