Query 028944
Match_columns 201
No_of_seqs 125 out of 1562
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02399 phospholipid hydroper 100.0 9.6E-34 2.1E-38 217.3 14.3 160 42-201 75-234 (236)
2 PLN02412 probable glutathione 100.0 7.9E-33 1.7E-37 203.9 15.0 160 42-201 5-164 (167)
3 PTZ00056 glutathione peroxidas 100.0 2.4E-32 5.3E-37 206.3 14.9 159 42-201 15-178 (199)
4 cd00340 GSH_Peroxidase Glutath 100.0 7.4E-32 1.6E-36 196.0 16.4 152 45-197 1-152 (152)
5 PRK10606 btuE putative glutath 100.0 9.3E-31 2E-35 194.2 15.1 157 44-201 3-181 (183)
6 PTZ00256 glutathione peroxidas 100.0 2.4E-30 5.2E-35 193.4 15.1 160 42-201 16-181 (183)
7 TIGR02540 gpx7 putative glutat 100.0 3.4E-30 7.5E-35 187.5 14.6 148 46-201 2-153 (153)
8 PRK15412 thiol:disulfide inter 100.0 2.1E-29 4.6E-34 188.6 11.4 133 41-200 40-175 (185)
9 PRK03147 thiol-disulfide oxido 100.0 2.5E-28 5.5E-33 180.9 13.1 135 42-200 37-171 (173)
10 COG0386 BtuE Glutathione perox 100.0 9.5E-28 2.1E-32 167.8 13.1 157 44-201 3-160 (162)
11 PF08534 Redoxin: Redoxin; In 99.9 4.5E-27 9.8E-32 169.7 9.7 123 42-189 2-136 (146)
12 TIGR00385 dsbE periplasmic pro 99.9 4E-26 8.6E-31 169.3 12.6 134 40-200 34-170 (173)
13 KOG1651 Glutathione peroxidase 99.9 6.3E-26 1.4E-30 160.6 12.7 160 42-201 10-169 (171)
14 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 6.1E-26 1.3E-30 159.1 11.3 123 42-183 1-124 (124)
15 PRK09437 bcp thioredoxin-depen 99.9 8E-26 1.7E-30 164.6 11.4 142 41-195 5-147 (154)
16 PRK14018 trifunctional thiored 99.9 2E-25 4.4E-30 187.7 15.0 136 42-198 34-170 (521)
17 cd03017 PRX_BCP Peroxiredoxin 99.9 8.6E-26 1.9E-30 161.7 10.9 139 44-198 1-140 (140)
18 cd02969 PRX_like1 Peroxiredoxi 99.9 1.2E-25 2.6E-30 166.5 10.6 141 43-200 1-151 (171)
19 cd03010 TlpA_like_DsbE TlpA-li 99.9 3.6E-25 7.9E-30 156.1 10.5 123 45-193 2-126 (127)
20 TIGR02661 MauD methylamine deh 99.9 4.5E-24 9.8E-29 160.3 14.4 128 41-198 47-176 (189)
21 cd03012 TlpA_like_DipZ_like Tl 99.9 1.3E-24 2.9E-29 153.0 10.7 113 56-187 13-125 (126)
22 cd03015 PRX_Typ2cys Peroxiredo 99.9 1.9E-24 4.2E-29 160.3 12.0 139 42-198 1-154 (173)
23 PRK00522 tpx lipid hydroperoxi 99.9 3.7E-24 7.9E-29 157.8 13.1 129 42-187 20-150 (167)
24 cd03018 PRX_AhpE_like Peroxire 99.9 2E-24 4.4E-29 156.2 10.9 128 42-188 3-134 (149)
25 cd02968 SCO SCO (an acronym fo 99.9 1.4E-24 3E-29 155.8 9.5 134 45-186 1-142 (142)
26 cd03014 PRX_Atyp2cys Peroxired 99.9 6.1E-24 1.3E-28 152.8 12.5 135 42-197 2-141 (143)
27 COG1225 Bcp Peroxiredoxin [Pos 99.9 3.8E-24 8.2E-29 153.1 10.7 131 42-186 6-138 (157)
28 TIGR03137 AhpC peroxiredoxin. 99.9 3.7E-24 8E-29 160.5 10.9 138 42-197 4-152 (187)
29 PF02630 SCO1-SenC: SCO1/SenC; 99.9 3.7E-24 8E-29 158.6 9.6 140 42-186 28-173 (174)
30 TIGR01626 ytfJ_HI0045 conserve 99.9 9.8E-24 2.1E-28 155.9 10.5 130 42-195 25-174 (184)
31 PRK13190 putative peroxiredoxi 99.9 1.5E-23 3.3E-28 158.8 11.1 140 42-200 4-153 (202)
32 COG1999 Uncharacterized protei 99.9 7.6E-23 1.7E-27 155.0 14.8 149 48-200 49-203 (207)
33 cd02967 mauD Methylamine utili 99.9 6.1E-23 1.3E-27 141.9 11.8 109 47-183 1-111 (114)
34 cd03008 TryX_like_RdCVF Trypar 99.9 1.5E-23 3.2E-28 149.9 8.8 106 57-183 16-128 (146)
35 cd02971 PRX_family Peroxiredox 99.9 5.1E-23 1.1E-27 147.2 11.5 130 45-190 1-132 (140)
36 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 6.5E-23 1.4E-27 143.7 10.3 121 47-196 1-121 (123)
37 PRK13599 putative peroxiredoxi 99.9 8.2E-23 1.8E-27 155.8 11.2 141 42-199 4-154 (215)
38 PRK10382 alkyl hydroperoxide r 99.9 1.7E-22 3.7E-27 150.8 11.2 140 42-199 4-154 (187)
39 cd02970 PRX_like2 Peroxiredoxi 99.9 1.9E-22 4.2E-27 145.6 10.0 130 45-186 1-148 (149)
40 cd03016 PRX_1cys Peroxiredoxin 99.9 2.1E-22 4.6E-27 152.8 10.2 141 42-199 1-152 (203)
41 PRK13728 conjugal transfer pro 99.9 2.6E-22 5.7E-27 147.5 10.3 116 43-200 52-170 (181)
42 PLN02919 haloacid dehalogenase 99.9 1.2E-22 2.5E-27 185.2 10.4 140 42-200 393-535 (1057)
43 cd02966 TlpA_like_family TlpA- 99.9 6.9E-22 1.5E-26 135.7 11.7 116 48-186 1-116 (116)
44 PRK15000 peroxidase; Provision 99.9 4.9E-22 1.1E-26 150.2 11.4 130 42-189 4-146 (200)
45 PRK13191 putative peroxiredoxi 99.9 5E-22 1.1E-26 151.6 10.7 140 42-198 9-158 (215)
46 PTZ00137 2-Cys peroxiredoxin; 99.9 1.6E-21 3.4E-26 151.7 11.8 139 41-198 69-222 (261)
47 PRK13189 peroxiredoxin; Provis 99.9 2.1E-21 4.6E-26 148.9 11.4 140 42-199 11-161 (222)
48 cd02964 TryX_like_family Trypa 99.9 1E-21 2.3E-26 139.4 7.9 107 57-184 8-116 (132)
49 cd03009 TryX_like_TryX_NRX Try 99.9 1.8E-21 4E-26 137.8 7.3 112 51-184 3-116 (131)
50 TIGR02738 TrbB type-F conjugat 99.8 1.2E-20 2.6E-25 136.3 9.4 109 56-201 44-153 (153)
51 PTZ00253 tryparedoxin peroxida 99.8 1.1E-20 2.3E-25 143.1 9.1 129 42-188 8-147 (199)
52 KOG2792 Putative cytochrome C 99.8 8.4E-20 1.8E-24 138.0 9.2 146 47-197 120-271 (280)
53 PF13905 Thioredoxin_8: Thiore 99.8 8.5E-20 1.8E-24 122.1 6.9 94 66-180 1-95 (95)
54 cd03013 PRX5_like Peroxiredoxi 99.8 1.5E-18 3.2E-23 126.3 9.2 133 42-189 1-142 (155)
55 PF00255 GSHPx: Glutathione pe 99.8 9.7E-18 2.1E-22 113.5 12.0 107 47-154 2-108 (108)
56 COG0450 AhpC Peroxiredoxin [Po 99.7 1.5E-17 3.2E-22 121.8 9.1 139 42-198 5-158 (194)
57 cd02950 TxlA TRX-like protein 99.7 1.8E-17 3.9E-22 118.8 5.3 105 51-200 3-109 (142)
58 cd02985 TRX_CDSP32 TRX family, 99.6 1.4E-15 3E-20 103.3 8.6 88 64-198 13-100 (103)
59 KOG2501 Thioredoxin, nucleored 99.6 1.9E-15 4.2E-20 107.5 7.8 114 49-183 15-131 (157)
60 cd02963 TRX_DnaJ TRX domain, D 99.6 2.4E-14 5.1E-19 98.5 8.9 91 63-200 21-111 (111)
61 cd02953 DsbDgamma DsbD gamma f 99.5 3E-14 6.6E-19 96.8 8.2 91 65-198 10-104 (104)
62 KOG0910 Thioredoxin-like prote 99.5 2E-14 4.3E-19 101.4 7.1 89 65-201 60-148 (150)
63 cd02948 TRX_NDPK TRX domain, T 99.5 5.1E-14 1.1E-18 95.4 8.8 87 65-200 16-102 (102)
64 TIGR02740 TraF-like TraF-like 99.5 1E-14 2.3E-19 115.0 6.2 106 55-198 155-261 (271)
65 cd02956 ybbN ybbN protein fami 99.5 8E-14 1.7E-18 93.2 9.1 86 65-198 11-96 (96)
66 cd02999 PDI_a_ERp44_like PDIa 99.5 3.2E-14 7E-19 96.0 6.6 87 62-197 14-100 (100)
67 KOG0855 Alkyl hydroperoxide re 99.5 1.2E-13 2.7E-18 98.1 8.1 133 41-191 64-198 (211)
68 cd02951 SoxW SoxW family; SoxW 99.5 1.6E-13 3.4E-18 96.3 7.5 102 65-200 12-118 (125)
69 cd02954 DIM1 Dim1 family; Dim1 99.5 3.8E-13 8.3E-18 92.0 8.6 83 65-195 13-95 (114)
70 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 4.1E-13 8.8E-18 90.7 7.4 84 64-195 16-99 (101)
71 PRK09381 trxA thioredoxin; Pro 99.4 5.4E-13 1.2E-17 91.3 8.0 88 65-200 20-107 (109)
72 PF13098 Thioredoxin_2: Thiore 99.4 4.3E-14 9.3E-19 97.2 1.8 106 65-197 4-112 (112)
73 PHA02278 thioredoxin-like prot 99.4 8.5E-13 1.9E-17 89.3 8.1 87 65-195 13-99 (103)
74 cd02994 PDI_a_TMX PDIa family, 99.4 1E-12 2.2E-17 88.7 8.2 87 64-199 15-101 (101)
75 cd02993 PDI_a_APS_reductase PD 99.4 1.7E-12 3.6E-17 89.0 8.6 88 65-196 20-108 (109)
76 PRK10996 thioredoxin 2; Provis 99.4 1.8E-12 3.8E-17 92.7 8.7 89 65-201 51-139 (139)
77 TIGR01295 PedC_BrcD bacterioci 99.4 4E-12 8.6E-17 88.7 10.0 98 65-197 22-120 (122)
78 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 3.5E-12 7.7E-17 86.5 9.0 85 65-196 18-103 (104)
79 cd02949 TRX_NTR TRX domain, no 99.4 4.6E-12 1E-16 84.9 9.0 86 65-198 12-97 (97)
80 COG3118 Thioredoxin domain-con 99.4 1.4E-12 3E-17 101.6 7.2 88 65-200 42-129 (304)
81 cd03006 PDI_a_EFP1_N PDIa fami 99.4 3.1E-12 6.7E-17 88.0 8.0 85 65-196 28-112 (113)
82 cd03005 PDI_a_ERp46 PDIa famil 99.4 2E-12 4.4E-17 87.1 6.9 84 67-197 17-102 (102)
83 TIGR01126 pdi_dom protein disu 99.3 7E-12 1.5E-16 84.4 8.1 89 65-200 12-101 (102)
84 cd03002 PDI_a_MPD1_like PDI fa 99.3 4.6E-12 1E-16 86.5 7.2 88 65-197 17-108 (109)
85 PTZ00443 Thioredoxin domain-co 99.3 7E-12 1.5E-16 96.0 8.2 85 66-198 52-136 (224)
86 cd03000 PDI_a_TMX3 PDIa family 99.3 6.3E-12 1.4E-16 85.3 7.1 87 65-199 14-102 (104)
87 KOG0907 Thioredoxin [Posttrans 99.3 8.6E-12 1.9E-16 84.6 7.6 84 66-199 21-104 (106)
88 PLN00410 U5 snRNP protein, DIM 99.3 1.1E-11 2.4E-16 88.0 7.4 43 65-108 22-64 (142)
89 cd02962 TMX2 TMX2 family; comp 99.3 1.9E-11 4.2E-16 88.2 8.2 44 65-108 46-89 (152)
90 TIGR01068 thioredoxin thioredo 99.3 2.7E-11 5.9E-16 81.2 8.0 88 66-201 14-101 (101)
91 cd02996 PDI_a_ERp44 PDIa famil 99.3 3.4E-11 7.4E-16 82.2 8.0 86 65-197 17-108 (108)
92 cd02997 PDI_a_PDIR PDIa family 99.2 3.7E-11 8E-16 81.2 8.0 87 65-196 16-103 (104)
93 PF00085 Thioredoxin: Thioredo 99.2 2.5E-11 5.5E-16 81.7 6.6 87 65-199 16-102 (103)
94 cd02998 PDI_a_ERp38 PDIa famil 99.2 5.1E-11 1.1E-15 80.5 7.3 87 66-197 18-105 (105)
95 cd02959 ERp19 Endoplasmic reti 99.2 1.7E-11 3.6E-16 85.0 4.9 46 62-108 15-60 (117)
96 cd02984 TRX_PICOT TRX domain, 99.2 1E-10 2.2E-15 78.1 8.2 83 66-197 14-96 (97)
97 COG2077 Tpx Peroxiredoxin [Pos 99.2 3.2E-10 7E-15 79.7 10.2 123 42-183 20-146 (158)
98 PTZ00051 thioredoxin; Provisio 99.2 1.7E-10 3.6E-15 77.3 8.5 80 65-194 17-96 (98)
99 PRK00293 dipZ thiol:disulfide 99.2 6.8E-11 1.5E-15 102.5 8.0 94 63-200 471-569 (571)
100 cd03065 PDI_b_Calsequestrin_N 99.2 1.2E-10 2.6E-15 80.7 7.2 88 66-201 27-119 (120)
101 cd02961 PDI_a_family Protein D 99.2 2.3E-10 5E-15 76.3 8.1 86 65-196 14-100 (101)
102 cd02965 HyaE HyaE family; HyaE 99.1 3.7E-10 8E-15 76.8 8.8 82 65-194 26-109 (111)
103 cd03001 PDI_a_P5 PDIa family, 99.1 3.9E-10 8.4E-15 76.0 8.6 85 66-197 18-102 (103)
104 PTZ00102 disulphide isomerase; 99.1 2.3E-10 5.1E-15 97.4 9.2 88 65-200 48-137 (477)
105 KOG0854 Alkyl hydroperoxide re 99.1 3.6E-10 7.7E-15 81.3 8.1 144 42-198 8-165 (224)
106 KOG0852 Alkyl hydroperoxide re 99.1 4.4E-10 9.6E-15 80.8 8.6 125 42-184 6-140 (196)
107 cd02986 DLP Dim1 family, Dim1- 99.1 7.1E-10 1.5E-14 75.5 8.4 43 65-108 13-55 (114)
108 TIGR00411 redox_disulf_1 small 99.1 1.1E-09 2.4E-14 70.7 8.4 81 69-201 2-82 (82)
109 PTZ00102 disulphide isomerase; 99.1 4.6E-10 9.9E-15 95.6 7.7 104 51-200 359-464 (477)
110 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 1.8E-09 3.9E-14 72.8 8.5 43 66-108 18-61 (104)
111 cd02957 Phd_like Phosducin (Ph 99.0 1.9E-09 4.1E-14 74.2 8.7 41 66-108 24-64 (113)
112 TIGR00424 APS_reduc 5'-adenyly 99.0 1.1E-09 2.4E-14 91.9 8.8 92 65-200 370-462 (463)
113 cd02955 SSP411 TRX domain, SSP 99.0 1.8E-09 4E-14 75.3 7.6 82 64-184 13-97 (124)
114 cd02947 TRX_family TRX family; 99.0 2.7E-09 5.9E-14 69.7 7.9 82 67-197 11-92 (93)
115 PF13728 TraF: F plasmid trans 99.0 1.2E-09 2.5E-14 83.6 6.9 101 59-197 113-214 (215)
116 cd02952 TRP14_like Human TRX-r 99.0 1.8E-09 3.8E-14 74.7 6.6 43 65-108 20-69 (119)
117 cd02989 Phd_like_TxnDC9 Phosdu 99.0 3.9E-09 8.5E-14 72.7 8.0 42 65-108 21-62 (113)
118 cd02975 PfPDO_like_N Pyrococcu 99.0 3.4E-09 7.3E-14 73.0 7.3 41 66-108 22-62 (113)
119 PLN02309 5'-adenylylsulfate re 98.9 6.2E-09 1.3E-13 87.4 8.9 92 65-200 364-456 (457)
120 PF00837 T4_deiodinase: Iodoth 98.9 3.6E-09 7.8E-14 80.6 6.7 140 42-200 75-236 (237)
121 TIGR02739 TraF type-F conjugat 98.9 3.3E-09 7.2E-14 82.6 6.4 99 61-197 145-244 (256)
122 cd02992 PDI_a_QSOX PDIa family 98.9 6.2E-09 1.3E-13 71.8 6.7 42 66-107 19-62 (114)
123 cd02987 Phd_like_Phd Phosducin 98.9 1.2E-08 2.5E-13 75.7 8.4 41 66-108 83-123 (175)
124 PRK13703 conjugal pilus assemb 98.9 5.9E-09 1.3E-13 80.8 6.2 99 61-197 138-237 (248)
125 cd02988 Phd_like_VIAF Phosduci 98.8 1.4E-08 3.1E-13 76.2 7.8 41 66-108 102-142 (192)
126 TIGR00412 redox_disulf_2 small 98.8 2.9E-08 6.3E-13 63.4 8.0 35 70-105 2-36 (76)
127 TIGR01130 ER_PDI_fam protein d 98.8 1.4E-08 3E-13 86.0 7.8 88 65-199 17-107 (462)
128 cd02958 UAS UAS family; UAS is 98.8 4.6E-08 9.9E-13 67.4 8.7 92 63-199 14-109 (114)
129 cd02982 PDI_b'_family Protein 98.8 2.8E-08 6E-13 66.9 7.5 91 66-201 12-103 (103)
130 PTZ00062 glutaredoxin; Provisi 98.7 4.1E-08 8.9E-13 74.2 6.7 74 67-198 18-91 (204)
131 KOG0908 Thioredoxin-like prote 98.7 4.5E-08 9.7E-13 74.6 6.5 84 65-198 20-103 (288)
132 cd02960 AGR Anterior Gradient 98.7 8.2E-08 1.8E-12 67.2 6.9 25 64-88 21-45 (130)
133 TIGR01130 ER_PDI_fam protein d 98.7 8.3E-08 1.8E-12 81.3 8.0 87 65-199 363-452 (462)
134 TIGR02187 GlrX_arch Glutaredox 98.6 1.2E-07 2.5E-12 72.7 6.2 89 64-199 17-109 (215)
135 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 1E-06 2.2E-11 57.9 8.7 46 61-108 7-52 (89)
136 TIGR02187 GlrX_arch Glutaredox 98.5 5.3E-07 1.1E-11 69.1 6.9 42 65-108 132-173 (215)
137 smart00594 UAS UAS domain. 98.4 1.8E-06 4E-11 60.2 8.3 89 64-197 25-121 (122)
138 PF14595 Thioredoxin_9: Thiore 98.4 8.7E-08 1.9E-12 67.4 1.1 80 62-186 37-116 (129)
139 KOG0190 Protein disulfide isom 98.4 4.9E-07 1.1E-11 76.1 5.7 87 66-199 42-130 (493)
140 cd02973 TRX_GRX_like Thioredox 98.4 4.6E-06 9.9E-11 51.6 8.0 38 69-108 2-39 (67)
141 PHA02125 thioredoxin-like prot 98.3 3.6E-06 7.8E-11 53.4 6.9 22 70-91 2-23 (75)
142 COG0526 TrxA Thiol-disulfide i 98.3 1.8E-06 3.8E-11 58.3 5.2 49 59-108 25-73 (127)
143 cd01659 TRX_superfamily Thiore 98.3 5.7E-06 1.2E-10 49.4 6.7 37 70-108 1-37 (69)
144 KOG0190 Protein disulfide isom 98.2 3.7E-06 7.9E-11 70.9 6.8 42 65-106 383-425 (493)
145 COG0678 AHP1 Peroxiredoxin [Po 98.2 6.2E-06 1.3E-10 58.3 6.7 129 42-185 5-146 (165)
146 COG4232 Thiol:disulfide interc 98.1 1.1E-05 2.3E-10 68.9 7.4 93 65-199 473-566 (569)
147 TIGR02196 GlrX_YruB Glutaredox 98.1 3.3E-05 7.2E-10 48.1 7.7 32 70-108 2-33 (74)
148 PF09695 YtfJ_HI0045: Bacteria 98.1 0.00016 3.5E-09 51.9 11.6 138 42-198 3-155 (160)
149 PF13899 Thioredoxin_7: Thiore 98.0 1.7E-05 3.6E-10 51.2 5.8 43 65-108 16-61 (82)
150 PF04592 SelP_N: Selenoprotein 98.0 5.9E-05 1.3E-09 57.4 9.4 118 44-187 8-129 (238)
151 cd03023 DsbA_Com1_like DsbA fa 97.9 0.0001 2.2E-09 52.8 8.5 42 65-106 4-45 (154)
152 KOG0191 Thioredoxin/protein di 97.9 6.6E-05 1.4E-09 62.5 8.0 42 65-107 46-87 (383)
153 COG2143 Thioredoxin-related pr 97.8 0.00021 4.5E-09 51.0 8.9 100 64-197 40-145 (182)
154 PRK11657 dsbG disulfide isomer 97.8 0.00014 3E-09 57.1 7.7 125 66-198 117-249 (251)
155 PF05988 DUF899: Bacterial pro 97.7 0.00044 9.5E-09 52.1 9.5 83 45-137 45-135 (211)
156 KOG1731 FAD-dependent sulfhydr 97.7 3.2E-05 6.9E-10 65.7 3.1 42 67-108 58-101 (606)
157 KOG0912 Thiol-disulfide isomer 97.6 8.6E-05 1.9E-09 58.6 4.2 33 66-98 13-45 (375)
158 KOG0541 Alkyl hydroperoxide re 97.6 0.0006 1.3E-08 48.7 8.0 82 42-132 11-103 (171)
159 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00021 4.5E-09 45.9 5.3 49 70-128 1-49 (84)
160 cd03007 PDI_a_ERp29_N PDIa fam 97.5 0.00044 9.5E-09 47.6 6.1 42 65-108 17-60 (116)
161 PF06110 DUF953: Eukaryotic pr 97.4 0.0007 1.5E-08 46.7 6.5 43 65-108 18-67 (119)
162 cd02991 UAS_ETEA UAS family, E 97.3 0.00088 1.9E-08 46.2 6.4 36 164-199 73-111 (116)
163 PF05176 ATP-synt_10: ATP10 pr 97.3 0.0044 9.6E-08 48.6 10.5 132 42-196 97-245 (252)
164 PF13778 DUF4174: Domain of un 97.3 0.0054 1.2E-07 42.4 9.7 105 61-199 3-110 (118)
165 PF13192 Thioredoxin_3: Thiore 97.2 0.001 2.2E-08 42.2 5.1 30 74-104 6-35 (76)
166 KOG4277 Uncharacterized conser 97.2 0.00053 1.1E-08 54.2 4.4 36 67-102 44-79 (468)
167 PRK10877 protein disulfide iso 97.1 0.00083 1.8E-08 52.1 4.9 37 65-105 106-142 (232)
168 cd03020 DsbA_DsbC_DsbG DsbA fa 97.0 0.0029 6.2E-08 47.7 7.1 41 65-108 76-116 (197)
169 TIGR02200 GlrX_actino Glutared 97.0 0.003 6.6E-08 39.6 6.2 22 70-91 2-23 (77)
170 PF13911 AhpC-TSA_2: AhpC/TSA 97.0 0.0061 1.3E-07 41.7 8.1 84 88-186 2-113 (115)
171 KOG0191 Thioredoxin/protein di 97.0 0.002 4.3E-08 53.7 6.5 41 66-106 162-203 (383)
172 COG4312 Uncharacterized protei 97.0 0.0033 7.1E-08 47.5 6.8 80 48-137 54-141 (247)
173 PRK11509 hydrogenase-1 operon 97.0 0.0027 5.8E-08 44.7 5.8 77 77-200 47-123 (132)
174 PRK11200 grxA glutaredoxin 1; 96.7 0.004 8.6E-08 40.3 4.9 38 69-108 2-39 (85)
175 KOG3425 Uncharacterized conser 96.7 0.0044 9.5E-08 42.3 4.7 43 65-108 24-74 (128)
176 PF13462 Thioredoxin_4: Thiore 96.6 0.0066 1.4E-07 43.8 5.8 50 58-107 4-54 (162)
177 PF03190 Thioredox_DsbH: Prote 96.6 0.0023 4.9E-08 46.6 3.2 28 59-86 30-57 (163)
178 COG3054 Predicted transcriptio 96.5 0.016 3.5E-07 41.3 7.1 120 58-196 51-175 (184)
179 COG4545 Glutaredoxin-related p 96.5 0.025 5.3E-07 35.3 6.7 43 71-127 5-47 (85)
180 cd03419 GRX_GRXh_1_2_like Glut 96.2 0.013 2.9E-07 37.2 5.0 34 70-108 2-35 (82)
181 TIGR03143 AhpF_homolog putativ 96.1 0.034 7.4E-07 48.7 8.6 38 67-106 477-514 (555)
182 cd02976 NrdH NrdH-redoxin (Nrd 96.1 0.028 6E-07 34.4 6.0 32 70-108 2-33 (73)
183 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.046 1E-06 46.0 8.7 65 44-109 274-338 (453)
184 PF00462 Glutaredoxin: Glutare 95.7 0.017 3.7E-07 34.5 3.6 32 70-108 1-32 (60)
185 cd03019 DsbA_DsbA DsbA family, 95.7 0.025 5.4E-07 41.5 5.0 41 65-106 14-54 (178)
186 KOG4498 Uncharacterized conser 95.6 0.096 2.1E-06 38.8 7.6 55 52-106 35-91 (197)
187 cd02066 GRX_family Glutaredoxi 95.6 0.034 7.3E-07 33.8 4.7 22 70-91 2-23 (72)
188 KOG0913 Thiol-disulfide isomer 95.4 0.008 1.7E-07 45.9 1.6 35 68-102 41-75 (248)
189 PRK15317 alkyl hydroperoxide r 95.4 0.083 1.8E-06 45.9 7.8 39 65-105 115-153 (517)
190 cd03418 GRX_GRXb_1_3_like Glut 95.3 0.093 2E-06 32.6 6.1 32 70-108 2-33 (75)
191 PF02114 Phosducin: Phosducin; 95.2 0.14 3E-06 40.5 8.0 42 65-108 145-186 (265)
192 TIGR02183 GRXA Glutaredoxin, G 95.2 0.085 1.8E-06 34.1 5.7 37 70-108 2-38 (86)
193 PHA03050 glutaredoxin; Provisi 95.1 0.058 1.2E-06 36.6 4.9 36 69-106 14-49 (108)
194 TIGR02181 GRX_bact Glutaredoxi 95.0 0.079 1.7E-06 33.4 5.2 21 70-90 1-21 (79)
195 PHA03075 glutaredoxin-like pro 94.8 0.19 4.1E-06 34.2 6.5 74 67-141 2-78 (123)
196 cd03027 GRX_DEP Glutaredoxin ( 94.6 0.21 4.5E-06 31.0 6.3 32 70-108 3-34 (73)
197 TIGR03140 AhpF alkyl hydropero 94.6 0.18 3.9E-06 43.8 7.9 39 65-105 116-154 (515)
198 TIGR02190 GlrX-dom Glutaredoxi 94.4 0.14 3E-06 32.4 5.1 37 65-108 5-41 (79)
199 COG0695 GrxC Glutaredoxin and 94.3 0.2 4.4E-06 32.0 5.7 45 70-127 3-47 (80)
200 KOG0911 Glutaredoxin-related p 94.2 0.039 8.4E-07 42.0 2.5 42 65-108 16-57 (227)
201 PRK10954 periplasmic protein d 94.2 0.069 1.5E-06 40.6 3.9 42 65-107 36-80 (207)
202 PRK10329 glutaredoxin-like pro 94.1 0.22 4.7E-06 31.8 5.5 32 70-108 3-34 (81)
203 KOG0914 Thioredoxin-like prote 93.9 0.2 4.3E-06 38.1 5.8 43 66-108 144-186 (265)
204 TIGR02189 GlrX-like_plant Glut 93.6 0.26 5.7E-06 32.8 5.5 22 70-91 10-31 (99)
205 KOG3414 Component of the U4/U6 93.6 0.98 2.1E-05 31.4 8.1 57 65-134 22-78 (142)
206 TIGR02194 GlrX_NrdH Glutaredox 93.5 0.23 5E-06 30.7 4.8 31 71-108 2-32 (72)
207 TIGR00365 monothiol glutaredox 93.4 0.31 6.7E-06 32.3 5.5 26 66-91 11-40 (97)
208 TIGR01617 arsC_related transcr 93.4 0.17 3.6E-06 34.8 4.4 50 72-133 3-52 (117)
209 cd02972 DsbA_family DsbA famil 93.2 0.15 3.3E-06 32.7 3.8 38 70-108 1-38 (98)
210 cd03028 GRX_PICOT_like Glutare 93.0 0.34 7.3E-06 31.5 5.2 27 65-91 6-36 (90)
211 PF11009 DUF2847: Protein of u 92.8 0.87 1.9E-05 30.7 7.0 41 65-106 18-58 (105)
212 COG1651 DsbG Protein-disulfide 92.4 0.37 8E-06 37.4 5.6 55 52-106 70-124 (244)
213 cd02977 ArsC_family Arsenate R 92.2 0.39 8.4E-06 32.2 4.9 48 71-130 2-49 (105)
214 PRK10824 glutaredoxin-4; Provi 92.2 0.37 7.9E-06 33.1 4.7 26 66-91 14-43 (115)
215 cd03035 ArsC_Yffb Arsenate Red 92.1 0.4 8.7E-06 32.3 4.7 48 71-130 2-49 (105)
216 cd03029 GRX_hybridPRX5 Glutare 92.0 0.57 1.2E-05 28.8 5.1 21 70-90 3-23 (72)
217 PRK10638 glutaredoxin 3; Provi 92.0 0.67 1.5E-05 29.5 5.6 22 70-91 4-25 (83)
218 cd03036 ArsC_like Arsenate Red 91.7 0.37 8.1E-06 32.7 4.3 49 71-131 2-50 (111)
219 cd02983 P5_C P5 family, C-term 91.6 0.62 1.4E-05 32.7 5.4 87 68-199 22-113 (130)
220 cd03032 ArsC_Spx Arsenate Redu 91.4 0.61 1.3E-05 31.9 5.2 50 71-132 3-52 (115)
221 PRK01655 spxA transcriptional 90.8 0.57 1.2E-05 32.9 4.6 51 70-132 2-52 (131)
222 PF06053 DUF929: Domain of unk 90.2 1.2 2.6E-05 34.9 6.3 33 65-97 57-89 (249)
223 PRK12559 transcriptional regul 90.0 1.1 2.4E-05 31.5 5.5 47 70-127 2-48 (131)
224 PRK10026 arsenate reductase; P 89.0 6.3 0.00014 28.1 8.8 50 70-131 4-53 (141)
225 PF13848 Thioredoxin_6: Thiore 88.8 1.7 3.6E-05 31.8 6.1 30 169-198 153-183 (184)
226 TIGR00995 3a0901s06TIC22 chlor 87.9 1.8 3.9E-05 34.3 5.8 78 43-136 79-157 (270)
227 KOG2507 Ubiquitin regulatory p 87.9 1.5 3.2E-05 36.8 5.5 37 163-199 73-109 (506)
228 PRK13617 psbV cytochrome c-550 87.3 0.5 1.1E-05 34.6 2.3 55 52-127 45-111 (170)
229 cd03073 PDI_b'_ERp72_ERp57 PDI 87.3 5.8 0.00013 26.9 7.5 31 169-200 79-110 (111)
230 PF06764 DUF1223: Protein of u 86.9 3.6 7.8E-05 31.2 6.8 36 70-108 1-37 (202)
231 PRK13344 spxA transcriptional 86.5 2.1 4.6E-05 30.1 5.1 51 71-133 3-53 (132)
232 PTZ00062 glutaredoxin; Provisi 86.5 1.9 4E-05 32.8 5.1 26 66-91 112-141 (204)
233 COG3019 Predicted metal-bindin 86.1 7.2 0.00016 27.7 7.4 46 69-133 27-72 (149)
234 KOG1752 Glutaredoxin and relat 84.8 4.4 9.5E-05 27.3 5.7 46 69-126 15-60 (104)
235 COG1393 ArsC Arsenate reductas 82.6 3.6 7.9E-05 28.3 4.8 52 70-133 3-54 (117)
236 TIGR03759 conj_TIGR03759 integ 82.4 5.5 0.00012 30.0 5.9 57 67-136 109-165 (200)
237 cd03033 ArsC_15kD Arsenate Red 80.3 5.5 0.00012 27.1 5.0 49 71-131 3-51 (113)
238 PF05768 DUF836: Glutaredoxin- 80.0 2.7 5.9E-05 26.6 3.2 53 70-137 2-54 (81)
239 TIGR03143 AhpF_homolog putativ 79.6 6.5 0.00014 34.6 6.5 43 61-105 361-403 (555)
240 TIGR00014 arsC arsenate reduct 79.3 6.1 0.00013 26.9 5.0 50 71-132 2-51 (114)
241 PF02966 DIM1: Mitosis protein 79.1 6.8 0.00015 27.5 5.1 43 65-108 19-61 (133)
242 COG1331 Highly conserved prote 77.9 8.3 0.00018 34.5 6.5 23 64-86 41-63 (667)
243 COG1651 DsbG Protein-disulfide 77.0 0.56 1.2E-05 36.4 -0.8 28 67-94 119-146 (244)
244 COG2179 Predicted hydrolase of 75.9 7.2 0.00016 28.7 4.7 60 67-135 29-89 (175)
245 KOG4614 Inner membrane protein 75.7 2.8 6E-05 32.4 2.6 28 169-196 249-276 (287)
246 cd03034 ArsC_ArsC Arsenate Red 74.4 9 0.0002 25.9 4.8 50 71-132 2-51 (112)
247 PF01323 DSBA: DSBA-like thior 74.4 5.5 0.00012 29.3 4.1 40 69-108 1-40 (193)
248 PRK10853 putative reductase; P 73.8 8.6 0.00019 26.4 4.6 51 70-132 2-52 (118)
249 cd02981 PDI_b_family Protein D 72.3 23 0.00049 22.7 6.9 36 66-105 17-52 (97)
250 cd03072 PDI_b'_ERp44 PDIb' fam 71.9 16 0.00036 24.6 5.6 27 81-108 29-58 (111)
251 KOG2961 Predicted hydrolase (H 71.5 36 0.00079 24.7 7.5 88 44-136 20-113 (190)
252 TIGR01616 nitro_assoc nitrogen 71.0 16 0.00035 25.4 5.4 48 69-127 2-49 (126)
253 cd03074 PDI_b'_Calsequestrin_C 69.4 30 0.00066 23.5 6.1 58 67-132 21-79 (120)
254 PRK12759 bifunctional gluaredo 69.4 8.2 0.00018 32.7 4.4 21 70-90 4-24 (410)
255 cd02979 PHOX_C FAD-dependent P 68.1 44 0.00096 24.4 10.8 47 43-89 1-52 (167)
256 PF08821 CGGC: CGGC domain; I 67.1 36 0.00078 23.0 6.8 70 58-131 27-100 (107)
257 PRK13620 psbV cytochrome c-550 66.8 1.8 3.8E-05 32.8 -0.1 62 52-127 90-156 (215)
258 KOG1672 ATP binding protein [P 65.9 54 0.0012 24.8 7.4 40 65-106 83-122 (211)
259 PF03960 ArsC: ArsC family; I 65.8 15 0.00033 24.6 4.4 50 73-134 1-50 (110)
260 PF08806 Sep15_SelM: Sep15/Sel 63.1 2 4.4E-05 27.2 -0.3 30 169-198 43-73 (78)
261 cd03025 DsbA_FrnE_like DsbA fa 60.7 12 0.00026 27.5 3.4 27 70-96 3-29 (193)
262 PF01216 Calsequestrin: Calseq 60.1 43 0.00094 27.7 6.5 134 8-197 1-140 (383)
263 KOG1364 Predicted ubiquitin re 60.0 4.3 9.2E-05 33.2 0.9 68 116-199 118-187 (356)
264 PRK13474 cytochrome b6-f compl 59.4 36 0.00078 25.2 5.7 10 75-84 104-115 (178)
265 COG1791 Uncharacterized conser 58.4 73 0.0016 23.5 7.8 74 55-134 24-97 (181)
266 PRK09534 btuF corrinoid ABC tr 57.9 31 0.00068 28.5 5.7 20 45-64 40-59 (359)
267 COG3117 Uncharacterized protei 54.4 18 0.00039 27.1 3.3 7 67-73 80-86 (188)
268 cd03031 GRX_GRX_like Glutaredo 53.7 46 0.00099 23.9 5.3 15 77-91 15-29 (147)
269 cd03060 GST_N_Omega_like GST_N 53.6 14 0.00029 22.3 2.3 31 72-107 3-33 (71)
270 PF05673 DUF815: Protein of un 53.5 87 0.0019 24.7 7.1 93 73-180 58-150 (249)
271 PF04134 DUF393: Protein of un 53.5 16 0.00035 24.5 2.8 31 73-106 2-32 (114)
272 PLN02640 glucose-6-phosphate 1 52.7 74 0.0016 28.3 7.2 43 67-109 88-131 (573)
273 TIGR03171 soxL2 Rieske iron-su 52.0 24 0.00052 28.7 3.9 32 45-76 99-131 (321)
274 PRK10893 lipopolysaccharide ex 51.0 31 0.00067 25.9 4.2 13 42-54 36-48 (192)
275 COG1535 EntB Isochorismate hyd 50.9 22 0.00048 26.5 3.3 55 69-125 41-95 (218)
276 PF13743 Thioredoxin_5: Thiore 50.9 17 0.00036 26.8 2.7 34 72-105 2-36 (176)
277 PF12563 Hemolysin_N: Hemolyti 50.5 24 0.00051 26.3 3.4 75 55-134 31-108 (187)
278 COG4594 FecB ABC-type Fe3+-cit 48.1 82 0.0018 25.1 6.1 42 50-108 35-76 (310)
279 COG4098 comFA Superfamily II D 46.8 1.4E+02 0.003 25.1 7.4 121 44-188 270-417 (441)
280 PF07976 Phe_hydrox_dim: Pheno 45.3 1.2E+02 0.0026 22.2 7.1 68 41-108 31-116 (169)
281 PF01106 NifU: NifU-like domai 45.3 70 0.0015 19.5 4.5 33 55-88 15-47 (68)
282 cd03040 GST_N_mPGES2 GST_N fam 45.3 19 0.00041 22.0 2.0 21 71-91 3-23 (77)
283 PF12354 Internalin_N: Bacteri 44.7 8.6 0.00019 22.8 0.3 10 6-15 1-10 (57)
284 PF11211 DUF2997: Protein of u 44.6 16 0.00035 20.8 1.4 17 172-188 3-19 (48)
285 TIGR02652 conserved hypothetic 44.2 6.6 0.00014 27.8 -0.3 14 76-89 10-23 (163)
286 PF09654 DUF2396: Protein of u 43.8 6.6 0.00014 27.7 -0.3 14 76-89 7-20 (161)
287 cd03051 GST_N_GTT2_like GST_N 43.0 25 0.00054 20.9 2.3 30 72-106 3-32 (74)
288 PLN03207 stomagen; Provisional 42.9 17 0.00037 24.0 1.5 13 46-58 47-59 (113)
289 PF14062 DUF4253: Domain of un 42.6 77 0.0017 21.5 4.8 53 76-131 24-79 (111)
290 cd03041 GST_N_2GST_N GST_N fam 41.7 81 0.0018 19.2 6.3 21 71-91 3-23 (77)
291 PF08285 DPM3: Dolichol-phosph 41.4 12 0.00027 24.5 0.7 27 76-102 64-91 (91)
292 PF14307 Glyco_tran_WbsX: Glyc 41.0 76 0.0016 26.1 5.4 44 65-108 157-200 (345)
293 COG5510 Predicted small secret 39.3 54 0.0012 18.2 2.9 21 6-26 2-22 (44)
294 cd00570 GST_N_family Glutathio 39.2 31 0.00068 19.7 2.3 31 72-107 3-33 (71)
295 PRK08294 phenol 2-monooxygenas 38.7 3E+02 0.0065 24.9 9.3 51 42-92 465-520 (634)
296 PRK14048 ferrichrome/ferrioxam 38.6 80 0.0017 26.1 5.3 23 47-69 30-52 (374)
297 PF06953 ArsD: Arsenical resis 38.5 1.3E+02 0.0029 20.8 7.0 34 75-108 10-49 (123)
298 KOG3384 Selenoprotein [General 37.8 56 0.0012 23.1 3.5 30 169-198 118-148 (154)
299 COG4991 Uncharacterized protei 37.7 96 0.0021 22.5 4.8 20 43-63 49-68 (155)
300 PF01323 DSBA: DSBA-like thior 37.6 25 0.00054 25.7 1.9 30 164-198 164-193 (193)
301 PRK00059 prsA peptidylprolyl i 37.3 26 0.00057 28.5 2.2 15 50-64 37-51 (336)
302 PF12017 Tnp_P_element: Transp 37.2 1.1E+02 0.0024 23.9 5.4 25 85-109 195-219 (236)
303 TIGR01753 flav_short flavodoxi 36.8 1E+02 0.0022 21.0 4.9 9 118-126 99-107 (140)
304 cd03037 GST_N_GRX2 GST_N famil 36.4 30 0.00065 20.7 1.9 19 73-91 4-22 (71)
305 PF04278 Tic22: Tic22-like fam 35.7 1.4E+02 0.0031 23.8 6.0 59 44-108 73-136 (274)
306 cd03024 DsbA_FrnE DsbA family, 35.6 1.8E+02 0.0038 21.3 6.9 37 72-108 3-42 (201)
307 COG2607 Predicted ATPase (AAA+ 35.4 1.6E+02 0.0034 23.5 5.9 83 87-180 101-183 (287)
308 PF03227 GILT: Gamma interfero 35.1 82 0.0018 21.1 4.0 36 70-105 3-42 (108)
309 PRK11867 2-oxoglutarate ferred 35.0 35 0.00076 27.4 2.5 21 74-95 16-36 (286)
310 PF14427 Pput2613-deam: Pput_2 34.9 62 0.0013 22.0 3.2 41 46-86 42-86 (118)
311 PF10673 DUF2487: Protein of u 34.7 95 0.0021 22.2 4.4 46 63-108 47-94 (142)
312 KOG2603 Oligosaccharyltransfer 34.5 2.6E+02 0.0056 22.9 8.1 36 62-97 56-95 (331)
313 KOG3170 Conserved phosducin-li 33.4 79 0.0017 24.1 3.9 40 65-106 110-149 (240)
314 TIGR03045 PS_II_C550 cytochrom 32.6 12 0.00027 27.2 -0.4 28 52-83 37-67 (159)
315 PF10589 NADH_4Fe-4S: NADH-ubi 32.6 6.8 0.00015 22.0 -1.4 22 76-97 17-38 (46)
316 PLN02539 glucose-6-phosphate 1 32.4 1.9E+02 0.0041 25.3 6.6 45 65-109 15-61 (491)
317 PRK13618 psbV cytochrome c-550 32.3 11 0.00023 27.6 -0.8 27 53-83 39-68 (163)
318 COG3581 Uncharacterized protei 31.4 92 0.002 26.3 4.3 35 75-109 78-114 (420)
319 COG2761 FrnE Predicted dithiol 31.3 2E+02 0.0044 22.3 6.0 37 68-104 5-43 (225)
320 PRK10299 PhoPQ regulatory prot 30.7 40 0.00086 19.0 1.5 15 6-20 1-15 (47)
321 PF07411 DUF1508: Domain of un 30.4 41 0.00089 19.1 1.6 29 169-197 6-34 (49)
322 PRK13731 conjugal transfer sur 30.3 2.7E+02 0.0059 21.8 7.3 37 65-104 49-85 (243)
323 COG5294 Uncharacterized protei 30.0 1.8E+02 0.0039 19.8 4.8 27 56-82 53-81 (113)
324 cd03059 GST_N_SspA GST_N famil 29.8 47 0.001 19.8 2.0 20 72-91 3-22 (73)
325 KOG1615 Phosphoserine phosphat 29.6 75 0.0016 24.2 3.2 42 84-134 89-130 (227)
326 CHL00133 psbV photosystem II c 29.6 23 0.0005 25.9 0.6 27 53-83 39-68 (163)
327 PRK13043 superantigen-like pro 28.8 2.5E+02 0.0053 22.0 5.9 34 74-107 81-114 (241)
328 PF11191 DUF2782: Protein of u 28.8 1.8E+02 0.0039 19.3 5.2 29 45-73 37-65 (105)
329 PRK10540 lipoprotein; Provisio 28.4 83 0.0018 19.6 2.8 10 6-15 3-12 (72)
330 cd00307 RuBisCO_small_like Rib 28.0 1.2E+02 0.0026 19.5 3.6 29 78-106 36-69 (84)
331 KOG1014 17 beta-hydroxysteroid 26.9 2.6E+02 0.0056 22.9 6.0 33 94-132 68-100 (312)
332 PRK05722 glucose-6-phosphate 1 26.8 2.2E+02 0.0047 25.0 6.1 44 66-109 8-52 (495)
333 TIGR02949 anti_SigH_actin anti 26.4 40 0.00087 21.5 1.2 21 76-96 37-57 (84)
334 PF02743 Cache_1: Cache domain 26.3 45 0.00099 20.6 1.5 15 169-183 54-68 (81)
335 PRK12854 glucose-6-phosphate 1 26.2 2.5E+02 0.0054 24.5 6.3 44 65-108 9-53 (484)
336 PF04723 GRDA: Glycine reducta 26.2 1.3E+02 0.0029 21.3 3.8 40 69-108 31-77 (150)
337 COG3016 PhuW Uncharacterized i 26.1 3.4E+02 0.0073 21.6 6.3 57 43-100 32-93 (295)
338 KOG1387 Glycosyltransferase [C 25.9 2.5E+02 0.0053 23.7 5.8 60 66-132 41-104 (465)
339 PRK14324 glmM phosphoglucosami 25.7 2.6E+02 0.0057 23.9 6.4 10 172-181 249-258 (446)
340 COG5429 Uncharacterized secret 25.6 3.1E+02 0.0066 21.6 6.0 37 69-108 44-80 (261)
341 PRK12853 glucose-6-phosphate 1 25.5 3E+02 0.0066 24.0 6.7 43 67-109 8-51 (482)
342 PF00479 G6PD_N: Glucose-6-pho 25.3 67 0.0015 23.9 2.4 39 71-109 1-40 (183)
343 KOG0183 20S proteasome, regula 25.2 62 0.0013 24.8 2.2 36 164-199 138-175 (249)
344 PF10453 NUFIP1: Nuclear fragi 25.0 70 0.0015 18.9 2.0 19 117-136 19-37 (56)
345 COG3634 AhpF Alkyl hydroperoxi 24.9 4E+02 0.0086 22.6 6.8 40 64-105 114-153 (520)
346 cd03045 GST_N_Delta_Epsilon GS 24.4 75 0.0016 18.9 2.2 30 72-106 3-32 (74)
347 PRK10887 glmM phosphoglucosami 24.1 3.3E+02 0.0072 23.2 6.7 10 172-181 245-254 (443)
348 PF12119 DUF3581: Protein of u 24.1 2.9E+02 0.0062 21.2 5.5 55 49-103 78-132 (218)
349 PF07009 DUF1312: Protein of u 24.0 43 0.00094 22.7 1.1 13 72-84 71-85 (113)
350 PRK13265 glycine/sarcosine/bet 23.6 1.4E+02 0.003 21.2 3.5 39 69-107 32-77 (154)
351 PRK11866 2-oxoacid ferredoxin 23.4 1.1E+02 0.0023 24.6 3.4 21 75-95 7-29 (279)
352 PF06122 TraH: Conjugative rel 23.3 44 0.00095 27.8 1.2 22 75-96 94-115 (361)
353 PRK05778 2-oxoglutarate ferred 23.2 71 0.0015 25.9 2.3 8 75-82 18-25 (301)
354 COG0266 Nei Formamidopyrimidin 23.2 26 0.00056 28.0 -0.2 8 76-83 266-273 (273)
355 cd08344 MhqB_like_N N-terminal 23.1 1E+02 0.0022 20.1 2.9 18 170-187 93-110 (112)
356 PF07449 HyaE: Hydrogenase-1 e 23.1 2.5E+02 0.0054 19.0 5.4 26 164-190 79-104 (107)
357 cd01450 vWFA_subfamily_ECM Von 23.0 2.6E+02 0.0056 19.1 5.3 8 99-106 132-139 (161)
358 COG0364 Zwf Glucose-6-phosphat 23.0 2.9E+02 0.0064 24.1 6.0 55 66-126 6-61 (483)
359 PF03978 Borrelia_REV: Borreli 23.0 68 0.0015 23.2 1.9 23 6-28 1-23 (160)
360 TIGR01533 lipo_e_P4 5'-nucleot 22.9 1E+02 0.0023 24.4 3.2 83 45-133 73-162 (266)
361 PF11072 DUF2859: Protein of u 22.7 2.8E+02 0.006 19.8 5.0 33 85-125 75-107 (142)
362 PF09419 PGP_phosphatase: Mito 22.7 2.5E+02 0.0055 20.6 5.0 87 44-132 16-108 (168)
363 TIGR02171 Fb_sc_TIGR02171 Fibr 22.6 3E+02 0.0064 26.2 6.3 41 68-108 786-830 (912)
364 PRK07718 fliL flagellar basal 22.6 2.8E+02 0.0061 19.5 5.1 7 6-12 1-7 (142)
365 PLN02333 glucose-6-phosphate 1 22.6 3.8E+02 0.0083 24.2 6.8 45 64-108 114-159 (604)
366 PF14903 WG_beta_rep: WG conta 22.6 60 0.0013 16.2 1.3 11 173-183 3-13 (35)
367 PRK15126 thiamin pyrimidine py 22.5 3.7E+02 0.0081 20.8 7.5 34 93-135 29-62 (272)
368 PRK14316 glmM phosphoglucosami 22.2 3.6E+02 0.0077 23.0 6.6 10 117-126 220-229 (448)
369 cd05802 GlmM GlmM is a bacteri 22.2 4.9E+02 0.011 22.1 8.0 10 172-181 243-252 (434)
370 PF10813 DUF2733: Protein of u 22.2 46 0.001 17.2 0.7 14 50-63 14-27 (32)
371 PF05984 Cytomega_UL20A: Cytom 22.1 2.3E+02 0.0049 18.2 5.2 11 61-71 62-72 (100)
372 PRK06756 flavodoxin; Provision 21.6 2.3E+02 0.005 19.7 4.6 7 119-125 104-110 (148)
373 COG1512 Beta-propeller domains 21.3 3.8E+02 0.0081 21.5 6.0 14 170-183 101-114 (271)
374 TIGR02826 RNR_activ_nrdG3 anae 21.2 96 0.0021 22.1 2.5 25 58-82 6-33 (147)
375 PF14481 Fimbrial_PilY2: Type 20.9 22 0.00049 23.9 -0.8 18 46-63 40-57 (118)
376 PF10281 Ish1: Putative stress 20.7 1.1E+02 0.0023 16.1 2.1 18 117-135 5-22 (38)
377 PF13798 PCYCGC: Protein of un 20.6 1.5E+02 0.0031 21.6 3.2 45 69-133 105-149 (158)
378 TIGR02451 anti_sig_ChrR anti-s 20.6 57 0.0012 24.9 1.3 22 76-97 29-50 (215)
379 TIGR02177 PorB_KorB 2-oxoacid: 20.5 1.1E+02 0.0023 24.7 2.8 20 76-95 2-23 (287)
380 PRK14323 glmM phosphoglucosami 20.4 3.8E+02 0.0082 22.8 6.3 10 172-181 247-256 (440)
381 PF12681 Glyoxalase_2: Glyoxal 20.3 2.4E+02 0.0052 17.8 5.6 15 169-183 93-107 (108)
382 PF08874 DUF1835: Domain of un 20.3 1.2E+02 0.0027 20.5 2.9 35 70-105 88-122 (124)
383 cd03022 DsbA_HCCA_Iso DsbA fam 20.2 1.3E+02 0.0029 21.7 3.2 35 72-107 3-37 (192)
No 1
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=100.00 E-value=9.6e-34 Score=217.33 Aligned_cols=160 Identities=72% Similarity=1.186 Sum_probs=139.6
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 121 (201)
.++.+|+|+++|.+|+.+++++++||++||+||++|||+|+.++|.|++++++|+++|++||+|+.|++...++++.+++
T Consensus 75 ~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei 154 (236)
T PLN02399 75 TEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 154 (236)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999987776777889999
Q ss_pred HHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCCC
Q 028944 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 201 (201)
++|+.++++++||++.+.|.++......|.++.....+..|+.+.++|++||||++|+|++++.|..+++++++.|+++|
T Consensus 155 ~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 155 KQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred HHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 99985567999999855566676667778776544344334457788999999999999999999999999999888765
No 2
>PLN02412 probable glutathione peroxidase
Probab=100.00 E-value=7.9e-33 Score=203.86 Aligned_cols=160 Identities=81% Similarity=1.297 Sum_probs=137.1
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 121 (201)
..+.+|+|++.|.+|+.+++++++||++||+||++|||.|+.++|.|++++++|+++|+.|++|+.|++.+.+.++.+++
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence 44679999999999999999999999999999999999999999999999999999999999999997766666777777
Q ss_pred HHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCCC
Q 028944 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 201 (201)
.++..++++++||++.+.|.++......|+.+.....+..+.++.+.|++||||++|+|++++.|..+.+++++.|+++|
T Consensus 85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 77654567999999965667776777888877665444544567778999999999999999999999988888877653
No 3
>PTZ00056 glutathione peroxidase; Provisional
Probab=100.00 E-value=2.4e-32 Score=206.25 Aligned_cols=159 Identities=42% Similarity=0.708 Sum_probs=135.2
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 121 (201)
.+..+|+|++.|.+|+.+++++++||++||+||++|||+|+.++|.|++++++|+++|++||+|+.|++..++.++.+++
T Consensus 15 ~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~ 94 (199)
T PTZ00056 15 LRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDI 94 (199)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999988877888899999
Q ss_pred HHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCc---cc--ccccccceEEEECCCCcEEEecCCCCCchhhhhc
Q 028944 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGF---LG--DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVG 196 (201)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~--~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~ 196 (201)
++|+++ ++++||++.|.+.++.....++.++...-... .+ .++.+.|++||||++|+|++++.|..+.+++++.
T Consensus 95 ~~f~~~-~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~ 173 (199)
T PTZ00056 95 RKFNDK-NKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKK 173 (199)
T ss_pred HHHHHH-cCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHH
Confidence 999955 69999999766677777777777665332211 11 1355557899999999999999999988888887
Q ss_pred ccCCC
Q 028944 197 TTIPL 201 (201)
Q Consensus 197 l~~ll 201 (201)
|+++|
T Consensus 174 I~~ll 178 (199)
T PTZ00056 174 IAELL 178 (199)
T ss_pred HHHHH
Confidence 77653
No 4
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=100.00 E-value=7.4e-32 Score=196.01 Aligned_cols=152 Identities=63% Similarity=1.091 Sum_probs=123.2
Q ss_pred cccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHH
Q 028944 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEV 124 (201)
Q Consensus 45 ~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~ 124 (201)
.+|+|++.|.+|+.+++++++||++||+||++||| |+.++|.|++++++|+++|+.|++|+.|.+..+++++.+++++|
T Consensus 1 ~~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 1 SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred CcceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHH
Confidence 36999999999999999999999999999999999 99999999999999998899999999886655566788999999
Q ss_pred HHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 125 ACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 125 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
++++++++||++.|.|.++......|..+....++..++.+.+.|++||||++|+|++++.|..+.+++++.|
T Consensus 80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~i 152 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKDI 152 (152)
T ss_pred HHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhcC
Confidence 9664699999995544455544455654333222222234555679999999999999999999888776543
No 5
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.97 E-value=9.3e-31 Score=194.21 Aligned_cols=157 Identities=44% Similarity=0.810 Sum_probs=141.1
Q ss_pred CcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHH
Q 028944 44 KSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQE 123 (201)
Q Consensus 44 ~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~ 123 (201)
..+++|++.|.+|+.+++++++||++||+|||+||+.|+ +++.|++++++|+++|++|++|+.++|+.+|+++.+++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 468999999999999999999999999999999999996 7999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCC--------------------cccccccccceEEEECCCCcEEEe
Q 028944 124 VACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGG--------------------FLGDAIKWNFTKFLVNKEGKVVER 183 (201)
Q Consensus 124 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~P~~~lid~~G~i~~~ 183 (201)
|++++++++||++.+.|.+|..+..+|.++....+. ..+..|.|+-+-||||++|+++++
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r 161 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR 161 (183)
T ss_pred HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence 996568999999999999999999999999865431 112368999999999999999999
Q ss_pred cCCCCCchh--hhhcccCCC
Q 028944 184 YAPTTSPLK--IEVGTTIPL 201 (201)
Q Consensus 184 ~~g~~~~~~--l~~~l~~ll 201 (201)
|.+...+++ ++++|+++|
T Consensus 162 ~~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 162 FSPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred ECCCCCCCHHHHHHHHHHHh
Confidence 999998876 888887764
No 6
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.97 E-value=2.4e-30 Score=193.39 Aligned_cols=160 Identities=43% Similarity=0.735 Sum_probs=131.3
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEE-EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVL-LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 120 (201)
.+..+|+|+++|.+|+.+++++++||++ |+.+|++|||+|+.++|.|++++++|+++|+.|++|+.|++...++++.++
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHH
Confidence 4567899999999999999999999954 566799999999999999999999999999999999988765566667899
Q ss_pred HHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCc--ccccccccc---eEEEECCCCcEEEecCCCCCchhhhh
Q 028944 121 IQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGF--LGDAIKWNF---TKFLVNKEGKVVERYAPTTSPLKIEV 195 (201)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~i~~~P---~~~lid~~G~i~~~~~g~~~~~~l~~ 195 (201)
+++|++++++++||++.|.|.++......|.++....... ..+++..+| ++||||++|+|++++.|..+.+.+.+
T Consensus 96 ~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~ 175 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQ 175 (183)
T ss_pred HHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHH
Confidence 9999865679999999666677777677787766543211 112455667 46999999999999999998888888
Q ss_pred cccCCC
Q 028944 196 GTTIPL 201 (201)
Q Consensus 196 ~l~~ll 201 (201)
.|+++|
T Consensus 176 ~I~~ll 181 (183)
T PTZ00256 176 DIEKLL 181 (183)
T ss_pred HHHHHh
Confidence 777654
No 7
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.97 E-value=3.4e-30 Score=187.46 Aligned_cols=148 Identities=45% Similarity=0.741 Sum_probs=123.2
Q ss_pred ccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHH
Q 028944 46 IYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVA 125 (201)
Q Consensus 46 ~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 125 (201)
+.+|++.|.+|+.+++++++||++||+||++|||+|+.++|.|++++++|+++|+.|++|+.+.++..++++.+.+++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998766666678899999999
Q ss_pred HhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccce----EEEECCCCcEEEecCCCCCchhhhhcccCCC
Q 028944 126 CTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFT----KFLVNKEGKVVERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 126 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~----~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 201 (201)
+++++++||++.|.+..+......|.+.... ....|+ +||||++|++++++.|..+.+++.+.|+++|
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~--------~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDS--------SKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhc--------CCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 6546999999855444444444445443321 112366 9999999999999999999999999998775
No 8
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.96 E-value=2.1e-29 Score=188.65 Aligned_cols=133 Identities=16% Similarity=0.135 Sum_probs=108.1
Q ss_pred cCCCcccceEEecCCC--CeeecCCC-CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCC
Q 028944 41 EAPKSIYDFTVKDIRG--NDVSLSGY-RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS 117 (201)
Q Consensus 41 ~~~~~~p~f~l~~~~G--~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~ 117 (201)
..|.++|+|++.|.+| +.++++++ +||++||+||++|||+|+.++|.|+++.+ +|++|++|+.+ ++
T Consensus 40 ~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~-------~~ 108 (185)
T PRK15412 40 LIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYK-------DD 108 (185)
T ss_pred hcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECC-------CC
Confidence 4789999999999984 66777665 79999999999999999999999988854 47999999976 47
Q ss_pred HHHHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 118 NEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
++++++|+++ ++.+|+... .|..+..... +++..+|++|+||++|+|++++.|..+.+++++.+
T Consensus 109 ~~~~~~~~~~-~~~~~~~~~-~D~~~~~~~~--------------~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i 172 (185)
T PRK15412 109 RQKAISWLKE-LGNPYALSL-FDGDGMLGLD--------------LGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEI 172 (185)
T ss_pred HHHHHHHHHH-cCCCCceEE-EcCCccHHHh--------------cCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHH
Confidence 7899999955 699998531 4544433211 26777799999999999999999999988887777
Q ss_pred cCC
Q 028944 198 TIP 200 (201)
Q Consensus 198 ~~l 200 (201)
+.+
T Consensus 173 ~~~ 175 (185)
T PRK15412 173 KPL 175 (185)
T ss_pred HHH
Confidence 654
No 9
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.96 E-value=2.5e-28 Score=180.91 Aligned_cols=135 Identities=21% Similarity=0.338 Sum_probs=117.9
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 121 (201)
.|+.+|+|++.+.+|+.+++++++||+++|+||++||++|+.+.+.+++++++++++++++++|+.| ++.+++
T Consensus 37 ~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d-------~~~~~~ 109 (173)
T PRK03147 37 VGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVD-------ETELAV 109 (173)
T ss_pred CCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcC-------CCHHHH
Confidence 7899999999999999999999999999999999999999999999999999999888999999987 478899
Q ss_pred HHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCC
Q 028944 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
++|+++ ++.+|+++ .|.++...+. +++.+.|++|+||++|+++..+.|..+.+++.+.++++
T Consensus 110 ~~~~~~-~~~~~~~~--~d~~~~~~~~--------------~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 110 KNFVNR-YGLTFPVA--IDKGRQVIDA--------------YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred HHHHHH-hCCCceEE--ECCcchHHHH--------------cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999954 69999988 4444333222 26777899999999999999999999888888877653
No 10
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.5e-28 Score=167.81 Aligned_cols=157 Identities=60% Similarity=1.039 Sum_probs=147.9
Q ss_pred CcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHH
Q 028944 44 KSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQE 123 (201)
Q Consensus 44 ~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~ 123 (201)
..+.+|++++.+|+.+++++++||++||.-.||.|+.-+ +...|+.++++|+++|+.|+++..++|.++|+++.+++++
T Consensus 3 ~~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 3 MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHH
Confidence 356789999999999999999999999999999999988 8999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCc-ccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCCC
Q 028944 124 VACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGF-LGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 124 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 201 (201)
|...+||.+||++...+.+|..+..+|.++..+..+. .+..|.|+-+-||||++|+++.+|.+..+++++...|+++|
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 9999999999999999999999999999999988774 44579999999999999999999999999999988888775
No 11
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.94 E-value=4.5e-27 Score=169.67 Aligned_cols=123 Identities=31% Similarity=0.474 Sum_probs=103.1
Q ss_pred CCCcccceEEec--CCCCeeecCCCCCcEEEEEEeec-CCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCH
Q 028944 42 APKSIYDFTVKD--IRGNDVSLSGYRGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSN 118 (201)
Q Consensus 42 ~~~~~p~f~l~~--~~G~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~ 118 (201)
+|+.+|+|++++ .+|+.+++++++||++||+||++ |||+|+.++|.++++++.++++++.+++|+.+ +.
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~--------~~ 73 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD--------DD 73 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES--------SS
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc--------CC
Confidence 789999999966 99999999999999999999999 99999999999999999999999999999987 33
Q ss_pred HHHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCccccccc---------ccceEEEECCCCcEEEecCCCCC
Q 028944 119 EEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIK---------WNFTKFLVNKEGKVVERYAPTTS 189 (201)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~---------~~P~~~lid~~G~i~~~~~g~~~ 189 (201)
..+.+|+++ ++.+|+++ .|.++..... | ++. .+|+++|||++|+|++.+.|..+
T Consensus 74 ~~~~~~~~~-~~~~~~~~--~D~~~~~~~~-~-------------~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 74 PPVREFLKK-YGINFPVL--SDPDGALAKA-L-------------GVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHHHHHH-TTTTSEEE--EETTSHHHHH-T-------------TCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHHHHh-hCCCceEE--echHHHHHHH-h-------------CCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 339999955 69999998 5543333222 2 333 67999999999999999999886
No 12
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.94 E-value=4e-26 Score=169.26 Aligned_cols=134 Identities=18% Similarity=0.180 Sum_probs=106.9
Q ss_pred ccCCCcccceEEecCCCC--eeecCCC-CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCC
Q 028944 40 QEAPKSIYDFTVKDIRGN--DVSLSGY-RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPG 116 (201)
Q Consensus 40 ~~~~~~~p~f~l~~~~G~--~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~ 116 (201)
...|.++|+|++.|.+|+ .++++++ +||+++|+||++|||+|+.++|.++++.+ +++++++|+.+ +
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~-------~ 102 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYK-------D 102 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECC-------C
Confidence 347899999999999997 4454565 78999999999999999999999988864 36999999976 3
Q ss_pred CHHHHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhc
Q 028944 117 SNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVG 196 (201)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~ 196 (201)
+.++.++|+++ ++.+|+.+. .|..+..... +++..+|++|+||++|++++++.|..+.+++++.
T Consensus 103 ~~~~~~~~~~~-~~~~f~~v~-~D~~~~~~~~--------------~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~ 166 (173)
T TIGR00385 103 QSQNALKFLKE-LGNPYQAIL-IDPNGKLGLD--------------LGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEG 166 (173)
T ss_pred ChHHHHHHHHH-cCCCCceEE-ECCCCchHHh--------------cCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHH
Confidence 66778899955 589998431 4555443322 2566679999999999999999999998888887
Q ss_pred ccCC
Q 028944 197 TTIP 200 (201)
Q Consensus 197 l~~l 200 (201)
++++
T Consensus 167 l~~~ 170 (173)
T TIGR00385 167 FLPA 170 (173)
T ss_pred HHHH
Confidence 7654
No 13
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.3e-26 Score=160.59 Aligned_cols=160 Identities=67% Similarity=1.083 Sum_probs=152.3
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 121 (201)
....+.+|+.+|.+|+.++++.++||++||.-.||.|+.-......|+.++++|+++|++|++...++|+++|+++.+++
T Consensus 10 ~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 10 EKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred hhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHH
Confidence 45678999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCCC
Q 028944 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 201 (201)
..+++.+|+..||++...|.+|..+..+|+++.....+..|.+|.|+-+-||||++|+++.+|....++.++...|+++|
T Consensus 90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 99999899999999999999999999999999999999999999999999999999999999999998888888887765
No 14
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.94 E-value=6.1e-26 Score=159.14 Aligned_cols=123 Identities=28% Similarity=0.449 Sum_probs=101.9
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeec-CCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 120 (201)
+|+++|+|++++.+|+.+++++++||++||+||++ |||.|+.+++.|++++++++++|+.+++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 58999999999999999999999999999999999 99999999999999999999999999999976 7889
Q ss_pred HHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEe
Q 028944 121 IQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVER 183 (201)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 183 (201)
++++.++ ++.+||++ .|..+... ..|+.... ......|++||||++|+|+++
T Consensus 73 ~~~~~~~-~~~~~~~~--~D~~~~~~-~~~~~~~~-------~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 73 IKQFLEE-YGLPFPVL--SDPDGELA-KAFGIEDE-------KDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHH-HTCSSEEE--EETTSHHH-HHTTCEET-------TTSEESEEEEEEETTSBEEEE
T ss_pred hhhhhhh-hccccccc--cCcchHHH-HHcCCccc-------cCCceEeEEEEECCCCEEEeC
Confidence 9999965 59999999 55443332 22211100 012266999999999999874
No 15
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.93 E-value=8e-26 Score=164.61 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=108.0
Q ss_pred cCCCcccceEEecCCCCeeecCCCCCcEEEEEEeec-CCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHH
Q 028944 41 EAPKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (201)
Q Consensus 41 ~~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 119 (201)
..|+.+|+|++.+.+|+.+++++++||++||+||++ |||.|+.+++.+++++++++++|+++|+|+.| +.+
T Consensus 5 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~~~ 76 (154)
T PRK09437 5 KAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------KPE 76 (154)
T ss_pred CCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHH
Confidence 378999999999999999999999999999999987 67779999999999999999999999999976 789
Q ss_pred HHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhh
Q 028944 120 EIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEV 195 (201)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~ 195 (201)
++++|+++ ++.+|+++ .|..+...+ .|+..........++.. ..|++||||++|+|++.+.|....+.+.+
T Consensus 77 ~~~~~~~~-~~~~~~~l--~D~~~~~~~-~~gv~~~~~~~~~~~~~-~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 147 (154)
T PRK09437 77 KLSRFAEK-ELLNFTLL--SDEDHQVAE-QFGVWGEKKFMGKTYDG-IHRISFLIDADGKIEHVFDKFKTSNHHDV 147 (154)
T ss_pred HHHHHHHH-hCCCCeEE--ECCCchHHH-HhCCCcccccccccccC-cceEEEEECCCCEEEEEEcCCCcchhHHH
Confidence 99999965 59999998 455443332 22221100000000000 12688999999999999998765554333
No 16
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.93 E-value=2e-25 Score=187.73 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=110.6
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 121 (201)
.++.+|+|++.|.+|+.++++ +||++||+||++||++|+.++|.|++++++++.+++.||+|+++.. ....+.+++
T Consensus 34 ~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~--~~e~~~~~~ 109 (521)
T PRK14018 34 VPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGF--LHEKKDGDF 109 (521)
T ss_pred ccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccc--cccccHHHH
Confidence 567899999999999999987 8999999999999999999999999999999877899999997532 112456788
Q ss_pred HHHHHhhcCc-ccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 122 QEVACTMFKA-EFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 122 ~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
++|+++ .+. ++|+. .|.++..... ++|..+|+++|||++|+|+..+.|.++.+++++.|+
T Consensus 110 ~~~~~~-~~y~~~pV~--~D~~~~lak~--------------fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 110 QKWYAG-LDYPKLPVL--TDNGGTLAQS--------------LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHh-CCCccccee--ccccHHHHHH--------------cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 888854 343 46766 4443322211 277888999999999999999999999988888776
No 17
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.93 E-value=8.6e-26 Score=161.74 Aligned_cols=139 Identities=24% Similarity=0.325 Sum_probs=109.9
Q ss_pred CcccceEEecCCCCeeecCCCCCcEEEEEEe-ecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHH
Q 028944 44 KSIYDFTVKDIRGNDVSLSGYRGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQ 122 (201)
Q Consensus 44 ~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~ 122 (201)
+.+|+|++.|.+|+.+++++++||++||+|| ++|||.|+.+++.|++++++++++|+++++|+.| +.++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 3689999999999999999999999999999 4899999999999999999999889999999976 789999
Q ss_pred HHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 123 EVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
+|+++ ++.+||++ .|.++...+. |+...... +......|++||||++|+|++.+.|..+.+.+.+.++
T Consensus 73 ~~~~~-~~~~~~~l--~D~~~~~~~~-~gv~~~~~----~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~~ 140 (140)
T cd03017 73 KFAEK-YGLPFPLL--SDPDGKLAKA-YGVWGEKK----KKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVLE 140 (140)
T ss_pred HHHHH-hCCCceEE--ECCccHHHHH-hCCccccc----cccCCcceeEEEECCCCEEEEEEecCCccchHHHHhC
Confidence 99965 69999998 5555433222 22111100 0011223899999999999999999987777766553
No 18
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.93 E-value=1.2e-25 Score=166.47 Aligned_cols=141 Identities=23% Similarity=0.324 Sum_probs=112.9
Q ss_pred CCcccceEEecCCCCeeecCCC-CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHH
Q 028944 43 PKSIYDFTVKDIRGNDVSLSGY-RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (201)
Q Consensus 43 ~~~~p~f~l~~~~G~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 121 (201)
|+.+|+|++.+.+|+.++++++ +|+++||+||++|||.|..+++.|++++++++++++.+++|+.|.....+.++.+++
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 5689999999999999999998 899999999999999999999999999999998899999999984322223689999
Q ss_pred HHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecC---------CCCCchh
Q 028944 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYA---------PTTSPLK 192 (201)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~---------g~~~~~~ 192 (201)
++|++ +++.+|+++ .|..+... +. +++.+.|++||||++|+|++... +..+.++
T Consensus 81 ~~~~~-~~~~~~~~l--~D~~~~~~-~~-------------~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 81 KAKAK-EHGYPFPYL--LDETQEVA-KA-------------YGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHHH-HCCCCceEE--ECCchHHH-HH-------------cCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 99995 569999999 45443222 11 26667799999999999997741 2223456
Q ss_pred hhhcccCC
Q 028944 193 IEVGTTIP 200 (201)
Q Consensus 193 l~~~l~~l 200 (201)
+.++|+++
T Consensus 144 ~~~~i~~~ 151 (171)
T cd02969 144 LRAALDAL 151 (171)
T ss_pred HHHHHHHH
Confidence 77766554
No 19
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.93 E-value=3.6e-25 Score=156.08 Aligned_cols=123 Identities=14% Similarity=0.171 Sum_probs=101.7
Q ss_pred cccceEEecCCC--CeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHH
Q 028944 45 SIYDFTVKDIRG--NDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQ 122 (201)
Q Consensus 45 ~~p~f~l~~~~G--~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~ 122 (201)
++|+|++.+.+| ..+++++++||++||+||++|||+|+.++|.++++.+++ +++|++|+.+ ++.++++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~~ 71 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENAL 71 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHHH
Confidence 579999999999 889999999999999999999999999999999998775 4999999976 5889999
Q ss_pred HHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhh
Q 028944 123 EVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKI 193 (201)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l 193 (201)
+|+++ ++.+|+.+. .|..+..... +++..+|++|+||++|+++.++.|..+.+.+
T Consensus 72 ~~~~~-~~~~~~~~~-~D~~~~~~~~--------------~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 72 AWLAR-HGNPYAAVG-FDPDGRVGID--------------LGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHHHh-cCCCCceEE-ECCcchHHHh--------------cCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 99954 688886441 4444332211 2667779999999999999999998876644
No 20
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.92 E-value=4.5e-24 Score=160.27 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=98.5
Q ss_pred cCCCcccceEEecCCCCeeecC--CCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCH
Q 028944 41 EAPKSIYDFTVKDIRGNDVSLS--GYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSN 118 (201)
Q Consensus 41 ~~~~~~p~f~l~~~~G~~~~l~--~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~ 118 (201)
..|+.+|+|+++|.+|+.++++ +++||+++|+||++|||+|+.++|.++++++++ ++.+++|+. +++
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~--------~~~ 115 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISD--------GTP 115 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeC--------CCH
Confidence 4899999999999999999995 579999999999999999999999999988654 577888873 378
Q ss_pred HHHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 119 EEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
+++++|+++ ++++++.+. ..+... .. +++..+|++|+||++|+|+++... ...+++++.++
T Consensus 116 ~~~~~~~~~-~~~~~~~~~---~~~~i~-~~-------------y~v~~~P~~~lID~~G~I~~~g~~-~~~~~le~ll~ 176 (189)
T TIGR02661 116 AEHRRFLKD-HELGGERYV---VSAEIG-MA-------------FQVGKIPYGVLLDQDGKIRAKGLT-NTREHLESLLE 176 (189)
T ss_pred HHHHHHHHh-cCCCcceee---chhHHH-Hh-------------ccCCccceEEEECCCCeEEEccCC-CCHHHHHHHHH
Confidence 899999965 588776551 121111 11 366777999999999999986332 34455555554
No 21
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.92 E-value=1.3e-24 Score=153.05 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=94.2
Q ss_pred CCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccce
Q 028944 56 GNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPI 135 (201)
Q Consensus 56 G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (201)
|+.+++++++||++||+||++|||+|+.++|.|++++++++++++.+++|+.+++. ..++.+++++|+++ ++++||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~--~~~~~~~~~~~~~~-~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFA--FERDLANVKSAVLR-YGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccc--cccCHHHHHHHHHH-cCCCCCE
Confidence 57899999999999999999999999999999999999999889999999875321 12578999999965 6999998
Q ss_pred eeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCC
Q 028944 136 FDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPT 187 (201)
Q Consensus 136 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~ 187 (201)
+ .|.++..... +++.++|++||||++|+|++.+.|.
T Consensus 90 ~--~D~~~~~~~~--------------~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 90 A--NDNDYATWRA--------------YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred E--ECCchHHHHH--------------hCCCcCCeEEEECCCCcEEEEEecC
Confidence 8 4544333221 2667779999999999999998885
No 22
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.92 E-value=1.9e-24 Score=160.26 Aligned_cols=139 Identities=20% Similarity=0.188 Sum_probs=105.5
Q ss_pred CCCcccceEEecCCC----CeeecCCCCCcEEEEEEe-ecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCC
Q 028944 42 APKSIYDFTVKDIRG----NDVSLSGYRGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPG 116 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G----~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~ 116 (201)
+|+.+|+|++.+.+| +.+++++++||++||+|| ++|||+|+.+++.|++++++|+++|+.|++||.|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 478999999999887 789999999999999999 7999999999999999999999889999999987
Q ss_pred CHHHHHHHHHhh------cCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCC-
Q 028944 117 SNEEIQEVACTM------FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTS- 189 (201)
Q Consensus 117 ~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~- 189 (201)
+.+..++|.+.. .+++|+++ .|..+...+. |+..... .-...|++||||++|+|++.+.+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~f~~l--~D~~~~~~~~-~gv~~~~-------~~~~~p~~~lID~~G~I~~~~~~~~~~ 142 (173)
T cd03015 73 SHFSHLAWRNTPRKEGGLGKINFPLL--ADPKKKISRD-YGVLDEE-------EGVALRGTFIIDPEGIIRHITVNDLPV 142 (173)
T ss_pred CHHHHHHHHHhhhhhCCccCcceeEE--ECCchhHHHH-hCCcccc-------CCceeeEEEEECCCCeEEEEEecCCCC
Confidence 455666676432 35789998 5665544433 3221110 00134899999999999999866543
Q ss_pred ---chhhhhccc
Q 028944 190 ---PLKIEVGTT 198 (201)
Q Consensus 190 ---~~~l~~~l~ 198 (201)
.+++.+.|+
T Consensus 143 ~~~~~~il~~l~ 154 (173)
T cd03015 143 GRSVDETLRVLD 154 (173)
T ss_pred CCCHHHHHHHHH
Confidence 334555543
No 23
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.92 E-value=3.7e-24 Score=157.77 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=99.4
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeecC-CCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASK-CGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 120 (201)
.|+.+|+|++.|.+|+.+++++++||++||+||++| ||+|+.+++.++++++++. |++|++||.| +++.
T Consensus 20 ~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~~~~ 89 (167)
T PRK00522 20 VGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------LPFA 89 (167)
T ss_pred CCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------CHHH
Confidence 799999999999999999999999999999999999 8999999999999999983 7999999976 6788
Q ss_pred HHHHHHhhcCcc-cceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCC
Q 028944 121 IQEVACTMFKAE-FPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPT 187 (201)
Q Consensus 121 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~ 187 (201)
+++|+++ +++. ++++ .|..+......|+....... . .++ ..|++||||++|+|++.+.+.
T Consensus 90 ~~~f~~~-~~~~~~~~l--sD~~~~~~~~~~gv~~~~~~-~--~g~-~~r~tfvId~~G~I~~~~~~~ 150 (167)
T PRK00522 90 QKRFCGA-EGLENVITL--SDFRDHSFGKAYGVAIAEGP-L--KGL-LARAVFVLDENNKVVYSELVP 150 (167)
T ss_pred HHHHHHh-CCCCCceEe--ecCCccHHHHHhCCeecccc-c--CCc-eeeEEEEECCCCeEEEEEECC
Confidence 9999965 5887 6777 45333222233322111000 0 011 235999999999999997543
No 24
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.92 E-value=2e-24 Score=156.21 Aligned_cols=128 Identities=20% Similarity=0.287 Sum_probs=103.1
Q ss_pred CCCcccceEEecCCCCeeecCCCCC-cEEEEEEe-ecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRG-KVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~g-k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 119 (201)
.|+.+|+|++.+.+|+.+++++++| |++||.|| ++|||.|+.+++.|++++++++++|+++++|+.| +.+
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~~ 74 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SPF 74 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CHH
Confidence 6899999999999999999999999 99988888 8999999999999999999999889999999976 678
Q ss_pred HHHHHHHhhcCcccceeeeeccC--CCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC
Q 028944 120 EIQEVACTMFKAEFPIFDKIDVN--GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT 188 (201)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~ 188 (201)
.+++|+++ ++.+||++ .|.. +.... .|+..... ...+.|++||||++|+|++.+.|..
T Consensus 75 ~~~~~~~~-~~~~~~~~--~D~~~~~~~~~-~~g~~~~~-------~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 75 SLRAWAEE-NGLTFPLL--SDFWPHGEVAK-AYGVFDED-------LGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHHHHh-cCCCceEe--cCCCchhHHHH-HhCCcccc-------CCCccceEEEECCCCEEEEEEecCC
Confidence 89999955 69999988 4433 22221 12111000 0112368999999999999988876
No 25
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.91 E-value=1.4e-24 Score=155.80 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=102.9
Q ss_pred cccceEEecCCCCeeecCCCCCcEEEEEEeecCCCC-cHHhHHHHHHHHHHhcCCC---eEEEEeecCCCCCCCCCCHHH
Q 028944 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQD---FEVLAFPCNQFAGQEPGSNEE 120 (201)
Q Consensus 45 ~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~---~~vv~vs~d~~~~~~~~~~~~ 120 (201)
.+|+|++.|.+|+.+++.+++||++||+||++||+. |+.+++.|+++++++++++ +++++|+.| ++.++++.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d----~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD----PERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC----CCCCCHHH
Confidence 369999999999999999999999999999999998 9999999999999998764 999999998 44478899
Q ss_pred HHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhh---c-CCcccccccccceEEEECCCCcEEEecCC
Q 028944 121 IQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE---K-GGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (201)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~-~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (201)
+++|+++ ++.+|+++. +... ....+...+... . .+..++++.+.|.+||||++|+|++.|.+
T Consensus 77 ~~~~~~~-~~~~~~~l~--~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 77 LKAYAKA-FGPGWIGLT--GTPE-EIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHHHH-hCCCcEEEE--CCHH-HHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 9999955 588999884 3211 111222111100 0 00012346677899999999999998764
No 26
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.91 E-value=6.1e-24 Score=152.79 Aligned_cols=135 Identities=17% Similarity=0.149 Sum_probs=102.9
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeecC-CCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASK-CGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 120 (201)
.|+.+|+|++.+.+|+.+++++++||++||+||++| ||+|+.+++.|++++++++ |+.|++||.| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 688999999999999999999999999999999998 6889999999999999984 7999999976 6788
Q ss_pred HHHHHHhhcCc-ccceeeeeccC-CCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC--Cchhhhhc
Q 028944 121 IQEVACTMFKA-EFPIFDKIDVN-GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT--SPLKIEVG 196 (201)
Q Consensus 121 ~~~~~~~~~~~-~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~--~~~~l~~~ 196 (201)
+++|.++ ++. +|+++ .|.. +... ..|...... .+ ...|++||||++|+|++.+.|.. ...++++.
T Consensus 72 ~~~~~~~-~~~~~~~~l--~D~~~~~~~-~~~gv~~~~------~~-~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~ 140 (143)
T cd03014 72 QKRWCGA-EGVDNVTTL--SDFRDHSFG-KAYGVLIKD------LG-LLARAVFVIDENGKVIYVELVPEITDEPDYEAA 140 (143)
T ss_pred HHHHHHh-cCCCCceEe--ecCcccHHH-HHhCCeecc------CC-ccceEEEEEcCCCeEEEEEECCCcccCCCHHHH
Confidence 8999855 575 78888 4443 3222 223221100 01 12489999999999999987654 22345444
Q ss_pred c
Q 028944 197 T 197 (201)
Q Consensus 197 l 197 (201)
|
T Consensus 141 ~ 141 (143)
T cd03014 141 L 141 (143)
T ss_pred h
Confidence 3
No 27
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.8e-24 Score=153.09 Aligned_cols=131 Identities=21% Similarity=0.275 Sum_probs=107.6
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEee-cCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVA-SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 120 (201)
.|+++|+|+|.+++|+.+++++++||++|++||. .++|.|..|.-.+++..+++.+.|.+|++||.| +++.
T Consensus 6 ~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s~~~ 77 (157)
T COG1225 6 VGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------SPKS 77 (157)
T ss_pred CCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------CHHH
Confidence 8999999999999999999999999999988885 688999999999999999999999999999966 9999
Q ss_pred HHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhc-CCcccccccccceEEEECCCCcEEEecCC
Q 028944 121 IQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEK-GGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (201)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (201)
+++|++ +++++|+.+ .|.++... ..|+.+..+. +|.. -....+++||||++|+|++.+..
T Consensus 78 ~~~F~~-k~~L~f~LL--SD~~~~v~-~~ygv~~~k~~~gk~--~~~~~R~TfvId~dG~I~~~~~~ 138 (157)
T COG1225 78 HKKFAE-KHGLTFPLL--SDEDGEVA-EAYGVWGEKKMYGKE--YMGIERSTFVIDPDGKIRYVWRK 138 (157)
T ss_pred HHHHHH-HhCCCceee--ECCcHHHH-HHhCcccccccCccc--cccccceEEEECCCCeEEEEecC
Confidence 999995 469999999 66666543 4454443221 1110 12334899999999999999833
No 28
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.91 E-value=3.7e-24 Score=160.49 Aligned_cols=138 Identities=16% Similarity=0.153 Sum_probs=103.8
Q ss_pred CCCcccceEEec-CCCC--eeecCCCCCcEEEEEEe-ecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCC
Q 028944 42 APKSIYDFTVKD-IRGN--DVSLSGYRGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS 117 (201)
Q Consensus 42 ~~~~~p~f~l~~-~~G~--~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~ 117 (201)
.|+.+|+|++.+ .+|+ .+++++++||++||+|| ++|||+|+.+++.|++++++++++|++|++||.| +
T Consensus 4 ~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D--------~ 75 (187)
T TIGR03137 4 INTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD--------T 75 (187)
T ss_pred cCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------C
Confidence 689999999998 5776 67888999999999999 9999999999999999999999889999999987 5
Q ss_pred HHHHHHHHHhh---cCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC----Cc
Q 028944 118 NEEIQEVACTM---FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT----SP 190 (201)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~ 190 (201)
.+..++|.+.. .+++||++ .|.++... ..|+..... .+ .+.|++||||++|+|++.+.... +.
T Consensus 76 ~~~~~~~~~~~~~~~~l~fpll--sD~~~~~a-~~~gv~~~~------~g-~~~p~tfiID~~G~I~~~~~~~~~~~~~~ 145 (187)
T TIGR03137 76 HFVHKAWHDTSEAIGKITYPML--GDPTGVLT-RNFGVLIEE------AG-LADRGTFVIDPEGVIQAVEITDNGIGRDA 145 (187)
T ss_pred HHHHHHHHhhhhhccCcceeEE--ECCccHHH-HHhCCcccC------CC-ceeeEEEEECCCCEEEEEEEeCCCCCCCH
Confidence 67777776431 26789998 55544333 223221100 01 13599999999999999875543 33
Q ss_pred hhhhhcc
Q 028944 191 LKIEVGT 197 (201)
Q Consensus 191 ~~l~~~l 197 (201)
+++.+.|
T Consensus 146 ~~ll~~l 152 (187)
T TIGR03137 146 SELLRKI 152 (187)
T ss_pred HHHHHHH
Confidence 4455444
No 29
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.91 E-value=3.7e-24 Score=158.57 Aligned_cols=140 Identities=19% Similarity=0.268 Sum_probs=105.0
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCC-cHHhHHHHHHHHHHhcCC--CeEEEEeecCCCCCCCCCCH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSN 118 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~ 118 (201)
.....|+|+|.|++|+.+++++++||++||+|.++.||. |+..+..|.++++++.++ .+++++||+| |++|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCH
Confidence 456689999999999999999999999999999999999 999999999999998754 6999999999 899999
Q ss_pred HHHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhc---CCcccccccccceEEEECCCCcEEEecCC
Q 028944 119 EEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEK---GGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (201)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (201)
+.+++|++ .++.++..|...........+.|+...... .+...+.+.|...+|||||+|+++..|.+
T Consensus 104 ~~L~~Y~~-~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 104 EVLKKYAK-KFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHHH-CHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHHH-hcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 99999995 578888877421111111111122211111 11223468899999999999999999865
No 30
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.90 E-value=9.8e-24 Score=155.88 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=95.8
Q ss_pred CCCcccceEEecC----------CCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEE------EEe
Q 028944 42 APKSIYDFTVKDI----------RGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEV------LAF 105 (201)
Q Consensus 42 ~~~~~p~f~l~~~----------~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v------v~v 105 (201)
.|+++|++++.|- +.+.++.++++||+.||+|||+||++|+.+.|.|.++ +++|+.+ ++|
T Consensus 25 ~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~~I 100 (184)
T TIGR01626 25 VEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTTTII 100 (184)
T ss_pred cCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccceEEE
Confidence 5667777766553 3346778888999999999999999999999999999 3456888 999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHhhcCcccc---eeeeeccCCCCchhhHHHHHhhcCCcccccccccceE-EEECCCCcEE
Q 028944 106 PCNQFAGQEPGSNEEIQEVACTMFKAEFP---IFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTK-FLVNKEGKVV 181 (201)
Q Consensus 106 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~-~lid~~G~i~ 181 (201)
+.|+ ...+...-+++|+++ .+..|| ++ .|.++.... . +++...|++ ||||++|+|+
T Consensus 101 N~dd---~~~~~~~fVk~fie~-~~~~~P~~~vl--lD~~g~v~~-~-------------~gv~~~P~T~fVIDk~GkVv 160 (184)
T TIGR01626 101 NADD---AIVGTGMFVKSSAKK-GKKENPWSQVV--LDDKGAVKN-A-------------WQLNSEDSAIIVLDKTGKVK 160 (184)
T ss_pred ECcc---chhhHHHHHHHHHHH-hcccCCcceEE--ECCcchHHH-h-------------cCCCCCCceEEEECCCCcEE
Confidence 9872 001123345666644 477787 66 555544332 2 267777888 8999999999
Q ss_pred EecCCCCCchhhhh
Q 028944 182 ERYAPTTSPLKIEV 195 (201)
Q Consensus 182 ~~~~g~~~~~~l~~ 195 (201)
+++.|..+.+++++
T Consensus 161 ~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 161 FVKEGALSDSDIQT 174 (184)
T ss_pred EEEeCCCCHHHHHH
Confidence 99999998876654
No 31
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.90 E-value=1.5e-23 Score=158.82 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=105.0
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEE-EEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLV-VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 120 (201)
.|+.+|+|++.+..| .+++++++||++|| +||++|||.|+.+++.|++++++++++|++|++||.| +.+.
T Consensus 4 vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~~~ 74 (202)
T PRK13190 4 LGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SIYS 74 (202)
T ss_pred CCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHH
Confidence 789999999999888 79999999997765 6899999999999999999999999999999999987 5666
Q ss_pred HHHHHH---hhcC--cccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEec----CCCCCch
Q 028944 121 IQEVAC---TMFK--AEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY----APTTSPL 191 (201)
Q Consensus 121 ~~~~~~---~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~----~g~~~~~ 191 (201)
.++|++ ++++ ++||++ .|.++...+ .|+..... . + ...|++||||++|+|++.. .+..+.+
T Consensus 75 ~~~w~~~~~~~~g~~~~fPll--~D~~~~ia~-~ygv~~~~----~--g-~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ 144 (202)
T PRK13190 75 HIAWLRDIEERFGIKIPFPVI--ADIDKELAR-EYNLIDEN----S--G-ATVRGVFIIDPNQIVRWMIYYPAETGRNID 144 (202)
T ss_pred HHHHHHhHHHhcCCCceEEEE--ECCChHHHH-HcCCcccc----C--C-cEEeEEEEECCCCEEEEEEEeCCCCCCCHH
Confidence 666553 2345 579999 566554443 23221110 0 1 1359999999999999875 3334566
Q ss_pred hhhhcccCC
Q 028944 192 KIEVGTTIP 200 (201)
Q Consensus 192 ~l~~~l~~l 200 (201)
++...|+.+
T Consensus 145 ellr~l~~l 153 (202)
T PRK13190 145 EIIRITKAL 153 (202)
T ss_pred HHHHHHHHh
Confidence 666666543
No 32
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.90 E-value=7.6e-23 Score=155.03 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=114.5
Q ss_pred ceEEecCCCCeeecCCCCCcEEEEEEeecCCCC-cHHhHHHHHHHHHHhc---CCCeEEEEeecCCCCCCCCCCHHHHHH
Q 028944 48 DFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGL-TQSNYKELNVLYEKYK---NQDFEVLAFPCNQFAGQEPGSNEEIQE 123 (201)
Q Consensus 48 ~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~---~~~~~vv~vs~d~~~~~~~~~~~~~~~ 123 (201)
+|+++|++|+.+++.+++||+++|+|.+|+||. |+.++..|.++.++.. ..+++++.||+| |++|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHH
Confidence 899999999999999999999999999999999 9999999999999998 346999999999 99999999999
Q ss_pred HHHhhcCcccceeeeeccCCCCchhhHHHHH--hhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCC
Q 028944 124 VACTMFKAEFPIFDKIDVNGKNAAPIYKFLK--SEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 124 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
|...++...+..++......+...+.|.... ....+...+.+.|....||||++|+++..+.+..+++++.+.|+++
T Consensus 125 Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l 203 (207)
T COG1999 125 YAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKL 203 (207)
T ss_pred HhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHH
Confidence 9941444445444211111112222222221 1111112467999999999999999999998888888888877765
No 33
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.90 E-value=6.1e-23 Score=141.94 Aligned_cols=109 Identities=16% Similarity=0.261 Sum_probs=89.8
Q ss_pred cceEEecCCCCeeecCCCC-CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHH
Q 028944 47 YDFTVKDIRGNDVSLSGYR-GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVA 125 (201)
Q Consensus 47 p~f~l~~~~G~~~~l~~~~-gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 125 (201)
|+|++.+.+|+.+++++++ ||++||+||++||++|+.++|.++++++++.+ ++.++.++ + ++.++.++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence 7899999999999999997 99999999999999999999999999988865 58888876 3 4788999999
Q ss_pred HhhcCcc-cceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEe
Q 028944 126 CTMFKAE-FPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVER 183 (201)
Q Consensus 126 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 183 (201)
++ +++. +|.+ .+ +. .... +++..+|++|+||++|+|+++
T Consensus 72 ~~-~~~~~~p~~--~~--~~-~~~~-------------~~~~~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 72 KK-HGLEAFPYV--LS--AE-LGMA-------------YQVSKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred HH-hCCCCCcEE--ec--HH-HHhh-------------cCCCCcCeEEEECCCCeEEec
Confidence 55 5874 8877 21 11 1111 266778999999999999876
No 34
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.90 E-value=1.5e-23 Score=149.93 Aligned_cols=106 Identities=10% Similarity=0.098 Sum_probs=81.0
Q ss_pred CeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC-------CeEEEEeecCCCCCCCCCCHHHHHHHHHhhc
Q 028944 57 NDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-------DFEVLAFPCNQFAGQEPGSNEEIQEVACTMF 129 (201)
Q Consensus 57 ~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-------~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~ 129 (201)
..+++++++||+++|+|||+|||+|+.++|.|+++++++.++ ++.||+||.| ++.+++++|+++ +
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D-------~~~~~~~~f~~~-~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD-------QSEQQQESFLKD-M 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC-------CCHHHHHHHHHH-C
Confidence 356778999999999999999999999999999999877643 6999999987 367889999965 5
Q ss_pred CcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEe
Q 028944 130 KAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVER 183 (201)
Q Consensus 130 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 183 (201)
++.|+.+...+..+...... +++..+|++||||++|+|+.+
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~-------------y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQ-------------FSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred CCCceeecccchHHHHHHHH-------------cCCCCCCEEEEECCCCcEEee
Confidence 87764431111111111111 367778999999999999976
No 35
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.90 E-value=5.1e-23 Score=147.24 Aligned_cols=130 Identities=21% Similarity=0.261 Sum_probs=102.7
Q ss_pred cccceEEecCCCCeeecCCCCCcEEEEEEe-ecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHH
Q 028944 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQE 123 (201)
Q Consensus 45 ~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~ 123 (201)
.+|+|++.|.+|+.+++++++||++||+|| ++||+.|+.+++.|++++++++++++.+++|+.| +++.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 379999999999999999999999999999 6899999999999999999998779999999976 6788999
Q ss_pred HHHhhc-CcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCc
Q 028944 124 VACTMF-KAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSP 190 (201)
Q Consensus 124 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~ 190 (201)
|+++ + +.+|+++ .|..+... ..|+....... .+....|++||||++|+|++.+.|....
T Consensus 73 ~~~~-~~~~~~~~l--~D~~~~~~-~~~g~~~~~~~----~~~~~~p~~~lid~~g~i~~~~~~~~~~ 132 (140)
T cd02971 73 WAEK-EGGLNFPLL--SDPDGEFA-KAYGVLIEKSA----GGGLAARATFIIDPDGKIRYVEVEPLPT 132 (140)
T ss_pred HHhc-ccCCCceEE--ECCChHHH-HHcCCcccccc----ccCceeEEEEEECCCCcEEEEEecCCCC
Confidence 9954 5 8889988 45544222 22221111000 0122347999999999999999998863
No 36
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.89 E-value=6.5e-23 Score=143.66 Aligned_cols=121 Identities=20% Similarity=0.250 Sum_probs=102.3
Q ss_pred cceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHH
Q 028944 47 YDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVAC 126 (201)
Q Consensus 47 p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~ 126 (201)
|+|++++.+|+.+++.+++||+++|+||++||++|+.+++.+++++++ +.+++|+.| +++.+++++|++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~------~~~~~~~~~~~~ 69 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALR------SGDDGAVARFMQ 69 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEcc------CCCHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999866 667888877 457999999996
Q ss_pred hhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhc
Q 028944 127 TMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVG 196 (201)
Q Consensus 127 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~ 196 (201)
+ ++.+|+.. .|.++..... +++.+.|+++|+|++| +++.+.|..+++.+++.
T Consensus 70 ~-~~~~~~~~--~d~~~~~~~~--------------~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 70 K-KGYGFPVI--NDPDGVISAR--------------WGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred H-cCCCccEE--ECCCcHHHHh--------------CCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 5 68999988 4544332211 3778889999999999 99999999988887654
No 37
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.89 E-value=8.2e-23 Score=155.81 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=105.5
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEE-EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVL-LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 120 (201)
.|+.+|+|++.+.+|+...+++++||++ |++||++|||.|..+++.+++++++|+++|+.|++||.| +.+.
T Consensus 4 ~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~~ 75 (215)
T PRK13599 4 LGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVFS 75 (215)
T ss_pred CCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHH
Confidence 7899999999999999888889999975 679999999999999999999999999999999999987 5555
Q ss_pred HHH---HHHh--hcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC----Cch
Q 028944 121 IQE---VACT--MFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT----SPL 191 (201)
Q Consensus 121 ~~~---~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~ 191 (201)
.++ ++++ .++++||++ .|.++... ..|+..... .+....|++||||++|+|++.+..+. +.+
T Consensus 76 ~~~w~~~i~~~~~~~i~fPil--~D~~~~va-~~yg~~~~~------~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~ 146 (215)
T PRK13599 76 HIKWVEWIKDNTNIAIPFPVI--ADDLGKVS-NQLGMIHPG------KGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVD 146 (215)
T ss_pred HHHHHHhHHHhcCCCCceeEE--ECCCchHH-HHcCCCccC------CCCceeeEEEEECCCCEEEEEEEcCCCCCCCHH
Confidence 544 4433 247889999 56555443 334322110 01224599999999999998864322 345
Q ss_pred hhhhcccC
Q 028944 192 KIEVGTTI 199 (201)
Q Consensus 192 ~l~~~l~~ 199 (201)
++...|+.
T Consensus 147 eilr~l~~ 154 (215)
T PRK13599 147 EILRALKA 154 (215)
T ss_pred HHHHHHHH
Confidence 55555543
No 38
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.89 E-value=1.7e-22 Score=150.84 Aligned_cols=140 Identities=11% Similarity=0.155 Sum_probs=105.8
Q ss_pred CCCcccceEEecC-CC--CeeecCCCCCcEEEEEEe-ecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCC
Q 028944 42 APKSIYDFTVKDI-RG--NDVSLSGYRGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS 117 (201)
Q Consensus 42 ~~~~~p~f~l~~~-~G--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~ 117 (201)
+|.++|+|+.... +| ..+++++++||++|++|| ++|||.|..+++.++++++++.++|++|++||.| +
T Consensus 4 ~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D--------~ 75 (187)
T PRK10382 4 INTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD--------T 75 (187)
T ss_pred cCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence 7899999997763 34 456788999999999999 8999999999999999999999999999999976 7
Q ss_pred HHHHHHHHHhh---cCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC----Cc
Q 028944 118 NEEIQEVACTM---FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT----SP 190 (201)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~ 190 (201)
.+.+++|.+.. .+++||++ .|.++... ..|+.+... .++ ..|++||||++|+|++.+.... +.
T Consensus 76 ~~~~~a~~~~~~~~~~l~fpll--sD~~~~ia-~~ygv~~~~------~g~-~~r~tfIID~~G~I~~~~~~~~~~~~~~ 145 (187)
T PRK10382 76 HFTHKAWHSSSETIAKIKYAMI--GDPTGALT-RNFDNMRED------EGL-ADRATFVVDPQGIIQAIEVTAEGIGRDA 145 (187)
T ss_pred HHHHHHHHHhhccccCCceeEE--EcCchHHH-HHcCCCccc------CCc-eeeEEEEECCCCEEEEEEEeCCCCCCCH
Confidence 88999998542 37899999 55544443 333322110 011 2399999999999999864432 44
Q ss_pred hhhhhcccC
Q 028944 191 LKIEVGTTI 199 (201)
Q Consensus 191 ~~l~~~l~~ 199 (201)
+++.+.|+.
T Consensus 146 ~eil~~l~a 154 (187)
T PRK10382 146 SDLLRKIKA 154 (187)
T ss_pred HHHHHHHHh
Confidence 555555543
No 39
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.88 E-value=1.9e-22 Score=145.59 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=96.5
Q ss_pred cccceEEecCCCCeeecCCCC-CcE-EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHH
Q 028944 45 SIYDFTVKDIRGNDVSLSGYR-GKV-LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQ 122 (201)
Q Consensus 45 ~~p~f~l~~~~G~~~~l~~~~-gk~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~ 122 (201)
.+|+|++.|.+|+.++++++. +++ +|++||++|||+|+.+++.|+++++++.++|+.+++|+.| +.+..+
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 379999999999999999875 455 5555569999999999999999999999889999999976 566777
Q ss_pred HHHHhhcCcccceeeeeccCCCCchhhHHHHHhhc----------------CCcccccccccceEEEECCCCcEEEecCC
Q 028944 123 EVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEK----------------GGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (201)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----------------~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (201)
+|.++ ++++||++ .|.++.... .|+...... .+..++.....|.+||||++|+|++.+.|
T Consensus 73 ~~~~~-~~~~~p~~--~D~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 73 AFDKG-KFLPFPVY--ADPDRKLYR-ALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHh-cCCCCeEE--ECCchhHHH-HcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 88854 69999999 555544332 222211000 00111123456999999999999998876
No 40
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.88 E-value=2.1e-22 Score=152.79 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=102.7
Q ss_pred CCCcccceEEecCCCCeeecCCCCC-cE-EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRG-KV-LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~g-k~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 119 (201)
.|+.+|+|++.+.+| .+++++++| |+ +|++||++|||.|..+++.|++++++++++|++|++||.| +.+
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 378899999999988 589999988 65 4568999999999999999999999999999999999987 566
Q ss_pred HHHHHHHh---h--cCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC----Cc
Q 028944 120 EIQEVACT---M--FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT----SP 190 (201)
Q Consensus 120 ~~~~~~~~---~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~ 190 (201)
..++|.++ . .+++||++ .|.++...+ .|+...... + .....|++||||++|+|++.+.++. +.
T Consensus 72 ~~~~~~~~i~~~~~~~~~fpil--~D~~~~ia~-~yg~~~~~~----~-~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~ 143 (203)
T cd03016 72 SHIKWIEDIEEYTGVEIPFPII--ADPDREVAK-LLGMIDPDA----G-STLTVRAVFIIDPDKKIRLILYYPATTGRNF 143 (203)
T ss_pred HHHHHHhhHHHhcCCCCceeEE--ECchHHHHH-HcCCccccC----C-CCceeeEEEEECCCCeEEEEEecCCCCCCCH
Confidence 66666532 1 58899999 555543332 232211100 0 1113478999999999998876644 34
Q ss_pred hhhhhcccC
Q 028944 191 LKIEVGTTI 199 (201)
Q Consensus 191 ~~l~~~l~~ 199 (201)
+++.+.|++
T Consensus 144 ~ell~~l~~ 152 (203)
T cd03016 144 DEILRVVDA 152 (203)
T ss_pred HHHHHHHHH
Confidence 455555543
No 41
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.88 E-value=2.6e-22 Score=147.50 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=89.3
Q ss_pred CCcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHH
Q 028944 43 PKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQ 122 (201)
Q Consensus 43 ~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~ 122 (201)
....|+|++. +|+.+++++++ ||+||++|||+|++++|.|+++++++ |+.|++|++|+ +
T Consensus 52 ~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~----- 110 (181)
T PRK13728 52 KPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------Q----- 110 (181)
T ss_pred CCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------C-----
Confidence 3456677774 99999999997 88899999999999999999999998 49999999873 1
Q ss_pred HHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCccccc--ccccceEEEECCCCcEE-EecCCCCCchhhhhcccC
Q 028944 123 EVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA--IKWNFTKFLVNKEGKVV-ERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--i~~~P~~~lid~~G~i~-~~~~g~~~~~~l~~~l~~ 199 (201)
-...||++ .|..+......| + +.++|++||||++|+++ ..+.|..+.+++++.+++
T Consensus 111 ------~~~~fPv~--~dd~~~~~~~~~-------------g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 111 ------GDTAFPEA--LPAPPDVMQTFF-------------PNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDT 169 (181)
T ss_pred ------CCCCCceE--ecCchhHHHHHh-------------CCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHH
Confidence 12578888 432222222222 3 24679999999999996 579999998888877765
Q ss_pred C
Q 028944 200 P 200 (201)
Q Consensus 200 l 200 (201)
+
T Consensus 170 l 170 (181)
T PRK13728 170 V 170 (181)
T ss_pred H
Confidence 4
No 42
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.88 E-value=1.2e-22 Score=185.18 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=115.0
Q ss_pred CCCcccceEEec--CCCCeeec-CCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCH
Q 028944 42 APKSIYDFTVKD--IRGNDVSL-SGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSN 118 (201)
Q Consensus 42 ~~~~~p~f~l~~--~~G~~~~l-~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~ 118 (201)
.+..+|+|+..+ .+|+.+++ ++++||++||+||++||++|+.++|.|++++++|+++++.|++|+.+.+ ++.++.
T Consensus 393 ~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~--D~~~~~ 470 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKF--DNEKDL 470 (1057)
T ss_pred cCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccc--cccccH
Confidence 688999999876 68988987 5899999999999999999999999999999999988999999985422 112457
Q ss_pred HHHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 119 EEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
++++++++ +++++||++ .|..+..... +++..+|+++|||++|++++++.|....+++.+.++
T Consensus 471 ~~~~~~~~-~~~i~~pvv--~D~~~~~~~~--------------~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~ 533 (1057)
T PLN02919 471 EAIRNAVL-RYNISHPVV--NDGDMYLWRE--------------LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVE 533 (1057)
T ss_pred HHHHHHHH-HhCCCccEE--ECCchHHHHh--------------cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHH
Confidence 88999995 469999988 4444322211 377888999999999999999999988888777765
Q ss_pred CC
Q 028944 199 IP 200 (201)
Q Consensus 199 ~l 200 (201)
.+
T Consensus 534 ~~ 535 (1057)
T PLN02919 534 AA 535 (1057)
T ss_pred HH
Confidence 43
No 43
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.88 E-value=6.9e-22 Score=135.71 Aligned_cols=116 Identities=28% Similarity=0.496 Sum_probs=98.0
Q ss_pred ceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHh
Q 028944 48 DFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (201)
Q Consensus 48 ~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 127 (201)
+|++.+.+|+.+++.+++||++++.||++||+.|+..++.+.++.+++++.++.+++|+.|. ++.+++++++++
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~~~ 74 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFLKK 74 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999987789999999982 259999999955
Q ss_pred hcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCC
Q 028944 128 MFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (201)
Q Consensus 128 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (201)
++.+++++ .|..... ... +++.+.|+++|+|++|++++++.|
T Consensus 75 -~~~~~~~~--~~~~~~~-~~~-------------~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 75 -YGITFPVL--LDPDGEL-AKA-------------YGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred -cCCCcceE--EcCcchH-HHh-------------cCcCccceEEEECCCCcEEEEecC
Confidence 58889988 4442222 122 266677999999999999998875
No 44
>PRK15000 peroxidase; Provisional
Probab=99.88 E-value=4.9e-22 Score=150.17 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=97.3
Q ss_pred CCCcccceEEecCC--CCe---eecCCC-CCcEEEEEEeec-CCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCC
Q 028944 42 APKSIYDFTVKDIR--GND---VSLSGY-RGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQE 114 (201)
Q Consensus 42 ~~~~~p~f~l~~~~--G~~---~~l~~~-~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~ 114 (201)
+|+.+|+|++.+.. |+. ++++++ +||++||+||++ |||.|+.+++.|++++++++++|++|++||.|
T Consensus 4 vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D------ 77 (200)
T PRK15000 4 VTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD------ 77 (200)
T ss_pred CCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------
Confidence 78999999999864 443 455555 799999999995 89999999999999999999999999999987
Q ss_pred CCCHHHHHHHHH---hhcC---cccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC
Q 028944 115 PGSNEEIQEVAC---TMFK---AEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT 188 (201)
Q Consensus 115 ~~~~~~~~~~~~---~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~ 188 (201)
+.+..++|.+ +..+ ++||++ .|.++... ..|+..... . + ...|.+||||++|+|++.+.+..
T Consensus 78 --~~~~~~~w~~~~~~~~g~~~i~fpll--sD~~~~ia-~~ygv~~~~----~--g-~~~r~tfiID~~G~I~~~~~~~~ 145 (200)
T PRK15000 78 --SEFVHNAWRNTPVDKGGIGPVKYAMV--ADVKREIQ-KAYGIEHPD----E--G-VALRGSFLIDANGIVRHQVVNDL 145 (200)
T ss_pred --CHHHHHHHHhhHHHhCCccccCceEE--ECCCcHHH-HHcCCccCC----C--C-cEEeEEEEECCCCEEEEEEecCC
Confidence 5666666642 2234 589999 55555443 333322110 0 1 14599999999999999987765
Q ss_pred C
Q 028944 189 S 189 (201)
Q Consensus 189 ~ 189 (201)
+
T Consensus 146 ~ 146 (200)
T PRK15000 146 P 146 (200)
T ss_pred C
Confidence 3
No 45
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.87 E-value=5e-22 Score=151.57 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=101.9
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEE-EEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLV-VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 120 (201)
.|+.+|+|++.+.+|+....++++||++|| +||++|||.|..+++.|++++++|+++|++|++||+| +...
T Consensus 9 iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s~~~ 80 (215)
T PRK13191 9 IGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------SNIS 80 (215)
T ss_pred CCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------CHHH
Confidence 799999999999999644445589997665 8899999999999999999999999999999999987 5565
Q ss_pred HHHH---HHh--hcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC----Cch
Q 028944 121 IQEV---ACT--MFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT----SPL 191 (201)
Q Consensus 121 ~~~~---~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~ 191 (201)
.++| +++ ..+++||++ .|.++...+ .|+.+.... .....|++||||++|+|++.+.++. +.+
T Consensus 81 h~aw~~~~~~~~~~~i~fPll--sD~~~~ia~-~ygv~~~~~------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~ 151 (215)
T PRK13191 81 HIEWVMWIEKNLKVEVPFPII--ADPMGNVAK-RLGMIHAES------STATVRAVFIVDDKGTVRLILYYPMEIGRNID 151 (215)
T ss_pred HHHHHhhHHHhcCCCCceEEE--ECCchHHHH-HcCCccccc------CCceeEEEEEECCCCEEEEEEecCCCCCCCHH
Confidence 5554 433 236889999 555554443 333321110 1224599999999999999865443 344
Q ss_pred hhhhccc
Q 028944 192 KIEVGTT 198 (201)
Q Consensus 192 ~l~~~l~ 198 (201)
++...|+
T Consensus 152 eilr~l~ 158 (215)
T PRK13191 152 EILRAIR 158 (215)
T ss_pred HHHHHHH
Confidence 5554443
No 46
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.87 E-value=1.6e-21 Score=151.74 Aligned_cols=139 Identities=15% Similarity=0.110 Sum_probs=102.9
Q ss_pred cCCCcccceEEec-CCCC--eeecCCC-CCcEEEEEEe-ecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCC
Q 028944 41 EAPKSIYDFTVKD-IRGN--DVSLSGY-RGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEP 115 (201)
Q Consensus 41 ~~~~~~p~f~l~~-~~G~--~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~ 115 (201)
..|+.+|+|++.+ .+|+ .++++++ +||++|++|| ++|||+|+.+++.+++.+++++++|++|++||.|
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D------- 141 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD------- 141 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-------
Confidence 4899999999987 4564 5899998 8888777777 7999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHh------hcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC-
Q 028944 116 GSNEEIQEVACT------MFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT- 188 (201)
Q Consensus 116 ~~~~~~~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~- 188 (201)
+++..++|.+. ..+++||++ .|.++... +.|+.+.. .-...|++||||++|+|++.+..+.
T Consensus 142 -s~~~h~aw~~~~~~~~g~~~l~fPlL--sD~~~~ia-kayGv~~~--------~g~a~R~tFIID~dG~I~~~~~~~~~ 209 (261)
T PTZ00137 142 -SPFSHKAWKELDVRQGGVSPLKFPLF--SDISREVS-KSFGLLRD--------EGFSHRASVLVDKAGVVKHVAVYDLG 209 (261)
T ss_pred -CHHHHHHHHhhhhhhccccCcceEEE--EcCChHHH-HHcCCCCc--------CCceecEEEEECCCCEEEEEEEeCCC
Confidence 56667777642 147889999 55543333 33332210 0114599999999999999864332
Q ss_pred ---Cchhhhhccc
Q 028944 189 ---SPLKIEVGTT 198 (201)
Q Consensus 189 ---~~~~l~~~l~ 198 (201)
+.+++...|+
T Consensus 210 ~gr~v~eiLr~l~ 222 (261)
T PTZ00137 210 LGRSVDETLRLFD 222 (261)
T ss_pred CCCCHHHHHHHHH
Confidence 4455555444
No 47
>PRK13189 peroxiredoxin; Provisional
Probab=99.86 E-value=2.1e-21 Score=148.92 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=102.4
Q ss_pred CCCcccceEEecCCCCeeecCC-CCCcEE-EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSG-YRGKVL-LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~-~~gk~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 119 (201)
.|+.+|+|++.+.+|. +++.+ ++||++ |++||++|||.|..+++.|++++++++++|++|++||.| +..
T Consensus 11 vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D--------~~~ 81 (222)
T PRK13189 11 IGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID--------QVF 81 (222)
T ss_pred CCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 7999999999999985 67766 599955 558899999999999999999999999999999999987 566
Q ss_pred HHHHHHHh---h--cCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC----Cc
Q 028944 120 EIQEVACT---M--FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT----SP 190 (201)
Q Consensus 120 ~~~~~~~~---~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~ 190 (201)
..++|.+. . .+++||++ .|.++...+ .|+...... .-...|++||||++|+|++...++. +.
T Consensus 82 ~h~aw~~~~~~~~g~~i~fPll--sD~~~~ia~-~ygv~~~~~------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~ 152 (222)
T PRK13189 82 SHIKWVEWIKEKLGVEIEFPII--ADDRGEIAK-KLGMISPGK------GTNTVRAVFIIDPKGIIRAILYYPQEVGRNM 152 (222)
T ss_pred HHHHHHHhHHHhcCcCcceeEE--EcCccHHHH-HhCCCcccc------CCCceeEEEEECCCCeEEEEEecCCCCCCCH
Confidence 66666643 1 25789998 555554443 333221100 0114699999999999998865433 34
Q ss_pred hhhhhcccC
Q 028944 191 LKIEVGTTI 199 (201)
Q Consensus 191 ~~l~~~l~~ 199 (201)
+++...|+.
T Consensus 153 ~eilr~l~a 161 (222)
T PRK13189 153 DEILRLVKA 161 (222)
T ss_pred HHHHHHHHH
Confidence 455555543
No 48
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.86 E-value=1e-21 Score=139.35 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=81.9
Q ss_pred CeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC--CeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028944 57 NDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (201)
Q Consensus 57 ~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (201)
+.+++++++||++||+||++||++|+.++|.+++++++++++ +++|++|+.| ++.+++++|+++ ++ .+.
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d-------~~~~~~~~~~~~-~~-~~~ 78 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRD-------RSEESFNEYFSE-MP-PWL 78 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecC-------CCHHHHHHHHhc-CC-CeE
Confidence 599999999999999999999999999999999999999875 7999999988 367899999965 46 444
Q ss_pred eeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEec
Q 028944 135 IFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (201)
Q Consensus 135 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (201)
.+...+. .....+... +++..+|+++|||++|+|+++.
T Consensus 79 ~~~~~d~--~~~~~~~~~----------~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 79 AVPFEDE--ELRELLEKQ----------FKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred eeccCcH--HHHHHHHHH----------cCCCCCCEEEEECCCCCEEchh
Confidence 3311110 000011100 3677789999999999999764
No 49
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.85 E-value=1.8e-21 Score=137.85 Aligned_cols=112 Identities=20% Similarity=0.263 Sum_probs=84.3
Q ss_pred EecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC--CeEEEEeecCCCCCCCCCCHHHHHHHHHhh
Q 028944 51 VKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVACTM 128 (201)
Q Consensus 51 l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 128 (201)
|.|.+|+.+++++++||++||+||++||++|+.++|.+++++++++++ +++|++|+.| .+.+++++++++.
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d-------~~~~~~~~~~~~~ 75 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWD-------RDEESFNDYFSKM 75 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECC-------CCHHHHHHHHHcC
Confidence 568899999999999999999999999999999999999999999865 7999999988 3568888888542
Q ss_pred cCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEec
Q 028944 129 FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (201)
Q Consensus 129 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (201)
+ +..+. .+ .......+... +++..+|+++|||++|+++.+.
T Consensus 76 -~--~~~~~-~~-~~~~~~~~~~~----------~~v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 76 -P--WLAVP-FS-DRERRSRLNRT----------FKIEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred -C--eeEcc-cC-CHHHHHHHHHH----------cCCCCCCEEEEECCCCCEEccc
Confidence 2 11110 11 10000111111 3677789999999999998763
No 50
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.84 E-value=1.2e-20 Score=136.32 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=76.9
Q ss_pred CCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccce
Q 028944 56 GNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPI 135 (201)
Q Consensus 56 G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (201)
|+.++++++ .||+||++|||+|++++|.|+++++++ ++.|++|++|+ .. . ..||.
T Consensus 44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~--~---------~~fp~ 98 (153)
T TIGR02738 44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG--L---------TGFPD 98 (153)
T ss_pred chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc--c---------ccccc
Confidence 666666544 499999999999999999999999988 48899999872 11 0 13444
Q ss_pred eeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcE-EEecCCCCCchhhhhcccCCC
Q 028944 136 FDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKV-VERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 136 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~ll 201 (201)
. .+.........|.. +++..+|++||||++|++ +.++.|..+.+++++.++++|
T Consensus 99 ~--~~~~~~~~~~~~~~----------~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 99 P--LPATPEVMQTFFPN----------PRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred c--cCCchHHHHHHhcc----------CCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 3 22222111111100 146677999999999886 557899999999998888765
No 51
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.84 E-value=1.1e-20 Score=143.11 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=97.6
Q ss_pred CCCcccceEEec----CCCCeeecCCCCCcEEEEEEee-cCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCC
Q 028944 42 APKSIYDFTVKD----IRGNDVSLSGYRGKVLLVVNVA-SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPG 116 (201)
Q Consensus 42 ~~~~~p~f~l~~----~~G~~~~l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~ 116 (201)
.|+.+|+|++.+ .+|+.+++++++||++||+||+ +||+.|+.+++.|++++++++++|++|++||.|
T Consensus 8 ~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d-------- 79 (199)
T PTZ00253 8 INHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD-------- 79 (199)
T ss_pred cCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC--------
Confidence 789999999765 4668899999999999999996 789999999999999999999999999999987
Q ss_pred CHHHHHHHHHhh------cCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC
Q 028944 117 SNEEIQEVACTM------FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT 188 (201)
Q Consensus 117 ~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~ 188 (201)
+.+...+|.... .+++||++ .|.++... +.|+.+... .++ ..|.+||||++|+|++.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~fpll--~D~~~~ia-~~ygv~~~~------~g~-~~r~~fiID~~G~i~~~~~~~~ 147 (199)
T PTZ00253 80 SEYAHLQWTLQERKKGGLGTMAIPML--ADKTKSIA-RSYGVLEEE------QGV-AYRGLFIIDPKGMLRQITVNDM 147 (199)
T ss_pred CHHHHHHHHhChHhhCCccccccceE--ECcHhHHH-HHcCCcccC------CCc-eEEEEEEECCCCEEEEEEecCC
Confidence 455555554211 13789999 55554443 333322110 011 2489999999999999876654
No 52
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.81 E-value=8.4e-20 Score=137.98 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=109.9
Q ss_pred cceEEecCCCCeeecCCCCCcEEEEEEeecCCCC-cHHhHHHHHHHHHHhcCC-C--eEEEEeecCCCCCCCCCCHHHHH
Q 028944 47 YDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQ-D--FEVLAFPCNQFAGQEPGSNEEIQ 122 (201)
Q Consensus 47 p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~-~--~~vv~vs~d~~~~~~~~~~~~~~ 122 (201)
.+|+|.|.+|+.++-.+|.|||+|++|..|+||+ |+.++..|.++.++..++ | ++-|.|++| |++|+++.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD----PeRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD----PERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC----cccCCHHHHH
Confidence 7999999999999999999999999999999999 999999999999999866 3 447899999 9999999999
Q ss_pred HHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCccc--ccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 123 EVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLG--DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
+|.++ |+...--++..-+.-..+.+-|..+-...+...+ |=|.|.=.+|||||+|+.+..|.-+.+.+++.+.|
T Consensus 196 eY~~e-F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I 271 (280)
T KOG2792|consen 196 EYVSE-FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSI 271 (280)
T ss_pred HHHHh-cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHH
Confidence 99965 6766543321111111222334333333111111 34777778999999999997777767887776655
No 53
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.80 E-value=8.5e-20 Score=122.14 Aligned_cols=94 Identities=24% Similarity=0.268 Sum_probs=70.9
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhc-CCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYK-NQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
||+++|+||++||++|+.++|.|.+++++++ +.++++|+|+.| ++.+++++++++ ++.++..+. ....
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-------~~~~~~~~~~~~-~~~~~~~~~--~~~~- 69 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-------EDEEEWKKFLKK-NNFPWYNVP--FDDD- 69 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-------SSHHHHHHHHHT-CTTSSEEEE--TTTH-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-------CCHHHHHHHHHh-cCCCceEEe--eCcc-
Confidence 7999999999999999999999999999999 557999999998 478999999965 456665542 1111
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcE
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKV 180 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i 180 (201)
....+... +++..+|+++|+|++|+|
T Consensus 70 ~~~~l~~~----------~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 70 NNSELLKK----------YGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHHHH----------TT-TSSSEEEEEETTSBE
T ss_pred hHHHHHHH----------CCCCcCCEEEEECCCCCC
Confidence 11122111 378888999999999987
No 54
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.77 E-value=1.5e-18 Score=126.29 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=99.4
Q ss_pred CCCcccceEEecCC---CCeeecCC-CCCcEEEE-EEeecCCCCcHHh-HHHHHHHHHHhcCCCe-EEEEeecCCCCCCC
Q 028944 42 APKSIYDFTVKDIR---GNDVSLSG-YRGKVLLV-VNVASKCGLTQSN-YKELNVLYEKYKNQDF-EVLAFPCNQFAGQE 114 (201)
Q Consensus 42 ~~~~~p~f~l~~~~---G~~~~l~~-~~gk~~lv-~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~-~vv~vs~d~~~~~~ 114 (201)
+|+.+|+|++.+.+ |+.+++++ ++||++|+ +|+..|||.|..+ ++.+++.++++.+.|+ .|++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 47899999999986 99999999 58875555 5557899999999 9999999999999999 69999976
Q ss_pred CCCHHHHHHHHHhhcCc--ccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCC
Q 028944 115 PGSNEEIQEVACTMFKA--EFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTS 189 (201)
Q Consensus 115 ~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~ 189 (201)
+.+..++|.++ ++. +||++ .|.++... ..|+....... .+.+......+|||| +|+|++.+.....
T Consensus 75 --~~~~~~~~~~~-~~~~~~f~lL--sD~~~~~~-~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~~ 142 (155)
T cd03013 75 --DPFVMKAWGKA-LGAKDKIRFL--ADGNGEFT-KALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEEDP 142 (155)
T ss_pred --CHHHHHHHHHh-hCCCCcEEEE--ECCCHHHH-HHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence 88999999955 587 89999 55554333 33443322110 011111347889999 6999998766553
No 55
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.77 E-value=9.7e-18 Score=113.50 Aligned_cols=107 Identities=66% Similarity=1.147 Sum_probs=99.0
Q ss_pred cceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHH
Q 028944 47 YDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVAC 126 (201)
Q Consensus 47 p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~ 126 (201)
-+|++.|.+|+.+++++++||++||.-.|+.|+.-. ....|++++++|+++|++|+++..++|+.+|+++.++++++..
T Consensus 2 Ydf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~ 80 (108)
T PF00255_consen 2 YDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCK 80 (108)
T ss_dssp GGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHC
T ss_pred cceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHH
Confidence 579999999999999999999999999999999988 9999999999999999999999999999999999999999998
Q ss_pred hhcCcccceeeeeccCCCCchhhHHHHH
Q 028944 127 TMFKAEFPIFDKIDVNGKNAAPIYKFLK 154 (201)
Q Consensus 127 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 154 (201)
.+++..||++...+.+|..+..+|.+++
T Consensus 81 ~~~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 81 EKFGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp HCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred hccCCcccceEEEEecCCCCcHHHHHhC
Confidence 8789999999999999999999998763
No 56
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.5e-17 Score=121.81 Aligned_cols=139 Identities=19% Similarity=0.275 Sum_probs=106.9
Q ss_pred CCCcccceEEecC-CCC---eeecCCCCCcEEEEEEeecCC-CCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCC
Q 028944 42 APKSIYDFTVKDI-RGN---DVSLSGYRGKVLLVVNVASKC-GLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPG 116 (201)
Q Consensus 42 ~~~~~p~f~l~~~-~G~---~~~l~~~~gk~~lv~f~~~~C-~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~ 116 (201)
.|+++|+|+.... .|. .++++++.|||.|++||.-.- +.|+.|+..+++.+++++++|++|++||+|
T Consensus 5 Ig~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D-------- 76 (194)
T COG0450 5 IGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD-------- 76 (194)
T ss_pred cCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC--------
Confidence 7999999999888 774 899999988999999997655 559999999999999999999999999988
Q ss_pred CHHHHHHHHHh---hcC---cccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC--
Q 028944 117 SNEEIQEVACT---MFK---AEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT-- 188 (201)
Q Consensus 117 ~~~~~~~~~~~---~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~-- 188 (201)
+...+++|... +.+ ++||++ .|.++..++ .|+.+.... ++ ....+|||||+|+|++....+.
T Consensus 77 s~fsH~aW~~~~~~~~gi~~i~~Pmi--aD~~~~vs~-~ygvl~~~~------g~-a~R~~FIIDp~g~ir~~~v~~~~i 146 (194)
T COG0450 77 SVFSHKAWKATIREAGGIGKIKFPMI--ADPKGEIAR-AYGVLHPEE------GL-ALRGTFIIDPDGVIRHILVNPLTI 146 (194)
T ss_pred cHHHHHHHHhcHHhcCCccceecceE--EcCchhHHH-HcCCcccCC------Cc-ceeEEEEECCCCeEEEEEEecCCC
Confidence 78888888754 556 689999 667776653 454443211 11 4467899999999998843333
Q ss_pred --Cchhhhhccc
Q 028944 189 --SPLKIEVGTT 198 (201)
Q Consensus 189 --~~~~l~~~l~ 198 (201)
+.+++...++
T Consensus 147 GRn~dEilR~id 158 (194)
T COG0450 147 GRNVDEILRVID 158 (194)
T ss_pred CcCHHHHHHHHH
Confidence 3445544443
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.70 E-value=1.8e-17 Score=118.85 Aligned_cols=105 Identities=12% Similarity=0.097 Sum_probs=78.8
Q ss_pred EecCCCCeeecCC--CCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhh
Q 028944 51 VKDIRGNDVSLSG--YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTM 128 (201)
Q Consensus 51 l~~~~G~~~~l~~--~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 128 (201)
+.+.+++...+++ .+||++||+||++||++|+.+.|.+.++.+++.++ +.++.|++|. + ...+.+ ++
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~-------~--~~~~~~-~~ 71 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN-------P--KWLPEI-DR 71 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC-------c--ccHHHH-HH
Confidence 3444555544444 36899999999999999999999999999999764 8888888762 1 111111 11
Q ss_pred cCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCC
Q 028944 129 FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 129 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
++|..+|+++++|++|+++.++.|..+.+++++.|+++
T Consensus 72 ----------------------------------~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l 109 (142)
T cd02950 72 ----------------------------------YRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred ----------------------------------cCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 25566699999999999999999999888887777654
No 58
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.64 E-value=1.4e-15 Score=103.30 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=66.3
Q ss_pred CCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCC
Q 028944 64 YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (201)
Q Consensus 64 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (201)
.+|+++||+||++||++|+.+.|.++++.+++ .++.++.|+.|. .++..+++ ++
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~--------~~~~~~l~-~~--------------- 66 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE--------NDSTMELC-RR--------------- 66 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC--------ChHHHHHH-HH---------------
Confidence 46899999999999999999999999999999 358899998762 22333444 22
Q ss_pred CCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
++|..+|+++++ ++|+++.++.|.. ++++++.+.
T Consensus 67 -------------------~~V~~~Pt~~~~-~~G~~v~~~~G~~-~~~l~~~~~ 100 (103)
T cd02985 67 -------------------EKIIEVPHFLFY-KDGEKIHEEEGIG-PDELIGDVL 100 (103)
T ss_pred -------------------cCCCcCCEEEEE-eCCeEEEEEeCCC-HHHHHHHHH
Confidence 145555985555 8999999999966 566666553
No 59
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.62 E-value=1.9e-15 Score=107.45 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=89.1
Q ss_pred eEEecCCCCeeecC-CCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC--CeEEEEeecCCCCCCCCCCHHHHHHHH
Q 028944 49 FTVKDIRGNDVSLS-GYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVA 125 (201)
Q Consensus 49 f~l~~~~G~~~~l~-~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~ 125 (201)
..|...+|..+..+ .++||++.++|-+.|||+||...|.|.+++++.+++ .+.||.||.| .+.+++.+|+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D-------~~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD-------RDEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC-------CCHHHHHHHH
Confidence 66888899888766 689999999999999999999999999999999865 4999999998 4889999999
Q ss_pred HhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEe
Q 028944 126 CTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVER 183 (201)
Q Consensus 126 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 183 (201)
.++ +..+..+ ..++...+-+.. .+.+.++|...++.++|+.+..
T Consensus 88 ~~~-~~~W~~i----Pf~d~~~~~l~~---------ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 88 LEH-HGDWLAI----PFGDDLIQKLSE---------KYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred Hhc-CCCeEEe----cCCCHHHHHHHH---------hcccCcCceeEEecCCCCEehH
Confidence 776 4444433 123222221111 1488888999999999988754
No 60
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.56 E-value=2.4e-14 Score=98.52 Aligned_cols=91 Identities=7% Similarity=-0.102 Sum_probs=72.4
Q ss_pred CCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccC
Q 028944 63 GYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (201)
Q Consensus 63 ~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (201)
..+|+++||.||++||++|+...|.+.++.+++++.++.+..|+.|. .. ... ++
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--------~~---~l~-~~-------------- 74 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--------ER---RLA-RK-------------- 74 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--------cH---HHH-HH--------------
Confidence 34689999999999999999999999999999986668888887651 11 111 11
Q ss_pred CCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCC
Q 028944 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
.+|..+|+++++ ++|+++.++.|..+.+.+.+.|+++
T Consensus 75 --------------------~~V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 75 --------------------LGAHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred --------------------cCCccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 155556999888 5999999999998888899888765
No 61
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.54 E-value=3e-14 Score=96.76 Aligned_cols=91 Identities=15% Similarity=0.051 Sum_probs=70.2
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHH---HHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeecc
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDV 141 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 141 (201)
.|+++||.||++||++|+...+.+ .++.+.+.+ ++.++.|+.+. +.+...+++ ++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~------------- 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KR------------- 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HH-------------
Confidence 578999999999999999999887 577778765 69999987652 222233333 22
Q ss_pred CCCCchhhHHHHHhhcCCcccccccccceEEEECC-CCcEEEecCCCCCchhhhhccc
Q 028944 142 NGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNK-EGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
+++.++|+++++++ +|+++.++.|..+.+++.+.|+
T Consensus 68 ---------------------~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 68 ---------------------FGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ---------------------cCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 14455599999999 9999999999999988887764
No 62
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2e-14 Score=101.44 Aligned_cols=89 Identities=20% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.++|++|.|||+||.+|+...|.|+++..+|.++ +.+.-|++|. ..+ .. ++
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-------~~e----la-~~---------------- 110 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-------HPE----LA-ED---------------- 110 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-------ccc----hH-hh----------------
Confidence 4689999999999999999999999999999776 9999998771 111 11 11
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCCC
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 201 (201)
|+|.++|+++++ ++|+.+.++.|..+.+.+++.|+++|
T Consensus 111 ------------------Y~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 111 ------------------YEISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ------------------cceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHh
Confidence 367777997777 69999999999999999998887754
No 63
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.54 E-value=5.1e-14 Score=95.38 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=66.6
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.+++++|+||++||++|+.+.|.+.++++++++..+.++.++.| ..+ .+ ++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~~----~~-~~---------------- 66 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TID----TL-KR---------------- 66 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CHH----HH-HH----------------
Confidence 47899999999999999999999999999998666788888654 221 12 21
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCC
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
++|...|+.++ .++|+.+.+..|. +++.+++.|+++
T Consensus 67 ------------------~~v~~~Pt~~~-~~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 67 ------------------YRGKCEPTFLF-YKNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred ------------------cCCCcCcEEEE-EECCEEEEEEecC-ChHHHHHHHhhC
Confidence 14555597544 4799999999985 678888888764
No 64
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.54 E-value=1e-14 Score=114.98 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=78.5
Q ss_pred CCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028944 55 RGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (201)
Q Consensus 55 ~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (201)
..+..++++++|+++||+||++||++|+.+.|.|+++.+++ |+.|+.|++|. +.. ..||
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~-------~~~-----------~~fp 213 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG-------GPL-----------PGFP 213 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC-------Ccc-----------ccCC
Confidence 34457788999999999999999999999999999999998 48999999883 110 1144
Q ss_pred eeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCC-CcEEEecCCCCCchhhhhccc
Q 028944 135 IFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKE-GKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 135 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~-G~i~~~~~g~~~~~~l~~~l~ 198 (201)
... .+.... .. .+|.++|++||+|++ |++.....|..+.+++.+.+.
T Consensus 214 ~~~---~d~~la-~~-------------~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~ 261 (271)
T TIGR02740 214 NAR---PDAGQA-QQ-------------LKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRIL 261 (271)
T ss_pred ccc---CCHHHH-HH-------------cCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHH
Confidence 431 111111 11 278888999999994 666666789888888877654
No 65
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.53 E-value=8e-14 Score=93.19 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=68.1
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
+++++||+||++||++|+.+.|.++++.+.+++. +.++.|+.+. . .+.. ++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~--------~---~~l~-~~---------------- 61 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCDA--------Q---PQIA-QQ---------------- 61 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEeccC--------C---HHHH-HH----------------
Confidence 4789999999999999999999999999999764 8888887651 1 1112 11
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
+++.++|++++++ +|+++.++.|..+.+++.+.|+
T Consensus 62 ------------------~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 62 ------------------FGVQALPTVYLFA-AGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred ------------------cCCCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHhC
Confidence 1445559999997 9999999999998888887664
No 66
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.52 E-value=3.2e-14 Score=95.98 Aligned_cols=87 Identities=18% Similarity=0.061 Sum_probs=64.5
Q ss_pred CCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeecc
Q 028944 62 SGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDV 141 (201)
Q Consensus 62 ~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 141 (201)
++++||++||.||++||++|+.+.|.++++.++++ ++.++.|..++ ..+ ... ++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~------~~~----~l~-~~------------- 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS------IKP----SLL-SR------------- 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC------CCH----HHH-Hh-------------
Confidence 45789999999999999999999999999999996 37777774320 000 111 11
Q ss_pred CCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 142 NGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
++|.+.|+++++++ | .+.++.|..+.+.+.+.+
T Consensus 68 ---------------------~~V~~~PT~~lf~~-g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 68 ---------------------YGVVGFPTILLFNS-T-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred ---------------------cCCeecCEEEEEcC-C-ceeEecCCCCHHHHHhhC
Confidence 25666699999974 5 677899998888776643
No 67
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.2e-13 Score=98.10 Aligned_cols=133 Identities=18% Similarity=0.193 Sum_probs=99.6
Q ss_pred cCCCcccceEEecCCCCeeecCCCCCc-EEEEEEeec-CCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCH
Q 028944 41 EAPKSIYDFTVKDIRGNDVSLSGYRGK-VLLVVNVAS-KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSN 118 (201)
Q Consensus 41 ~~~~~~p~f~l~~~~G~~~~l~~~~gk-~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~ 118 (201)
..|+.+|||+|.|.||..++|.++.|+ ++|++||.. ..|.|.++.-.+++-+++++..+.+|+++|.| +.
T Consensus 64 ~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D--------~s 135 (211)
T KOG0855|consen 64 NKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD--------DS 135 (211)
T ss_pred ecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------ch
Confidence 489999999999999999999999875 666666643 45669999999999999999889999999976 78
Q ss_pred HHHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCch
Q 028944 119 EEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPL 191 (201)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~ 191 (201)
...++|.. +++++|..+ .|+.++.. ..++.-.. .+| + .....+||+|++|.....+....+++
T Consensus 136 ~sqKaF~s-KqnlPYhLL--SDpk~e~i-k~lGa~k~----p~g-g-~~~Rsh~if~kg~~k~~ik~~~isPe 198 (211)
T KOG0855|consen 136 ASQKAFAS-KQNLPYHLL--SDPKNEVI-KDLGAPKD----PFG-G-LPGRSHYIFDKGGVKQLIKNNQISPE 198 (211)
T ss_pred HHHHHhhh-hccCCeeee--cCcchhHH-HHhCCCCC----CCC-C-cccceEEEEecCCeEEEEEecccCcc
Confidence 88999995 469999999 66665543 22221111 111 1 11257799999887766666666554
No 68
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.47 E-value=1.6e-13 Score=96.34 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=70.8
Q ss_pred CC-cEEEEEEeecCCCCcHHhHHHHH---HHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeec
Q 028944 65 RG-KVLLVVNVASKCGLTQSNYKELN---VLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (201)
Q Consensus 65 ~g-k~~lv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (201)
.| |++||+||++||++|+.+.+.+. ++.+.+.+ ++.++.|++|. +. .+..| +.
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~-------~~-~~~~~---------~~----- 68 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG-------DK-EVTDF---------DG----- 68 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC-------Cc-eeecc---------CC-----
Confidence 57 89999999999999999999875 56666654 58899998762 11 11111 00
Q ss_pred cCCCCchhhHHHHHhhcCCcccccccccceEEEECCC-CcEEEecCCCCCchhhhhcccCC
Q 028944 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKE-GKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~-G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
.......+... +++..+|+++++|++ |+++.++.|..+.+.+.+.|+.+
T Consensus 69 -~~~~~~~l~~~----------~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 69 -EALSEKELARK----------YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred -CCccHHHHHHH----------cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 00011111111 367778999999999 89999999998888887776643
No 69
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.46 E-value=3.8e-13 Score=91.97 Aligned_cols=83 Identities=13% Similarity=-0.027 Sum_probs=63.6
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.++++||.||++||++|+...|.+.++.+++++. +.++-|++|. .+ +.. ++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~-------~~----~la-~~---------------- 63 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE-------VP----DFN-KM---------------- 63 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC-------CH----HHH-HH----------------
Confidence 4679999999999999999999999999999765 7889998772 11 122 21
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhh
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEV 195 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~ 195 (201)
++|..+|+++++ ++|+.+.+..|..+..++.-
T Consensus 64 ------------------~~V~~iPTf~~f-k~G~~v~~~~G~~~~~~~~~ 95 (114)
T cd02954 64 ------------------YELYDPPTVMFF-FRNKHMKIDLGTGNNNKINW 95 (114)
T ss_pred ------------------cCCCCCCEEEEE-ECCEEEEEEcCCCCCceEEE
Confidence 255566986666 69999999988876665443
No 70
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.44 E-value=4.1e-13 Score=90.67 Aligned_cols=84 Identities=11% Similarity=0.170 Sum_probs=65.1
Q ss_pred CCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCC
Q 028944 64 YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (201)
Q Consensus 64 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (201)
.++++++|.||++||++|+.+.|.+.++.+++++. +.+..|+.|. .+ ... ++
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~-------~~----~~~-~~--------------- 67 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD-------DR----MLC-RS--------------- 67 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc-------cH----HHH-HH---------------
Confidence 35689999999999999999999999999999764 8888998762 11 122 11
Q ss_pred CCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhh
Q 028944 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEV 195 (201)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~ 195 (201)
++|...|+++++ ++|+.+..|.|..+.+.+.+
T Consensus 68 -------------------~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 68 -------------------QGVNSYPSLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred -------------------cCCCccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence 144455998777 78998889999888877654
No 71
>PRK09381 trxA thioredoxin; Provisional
Probab=99.44 E-value=5.4e-13 Score=91.32 Aligned_cols=88 Identities=19% Similarity=0.150 Sum_probs=69.0
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.+++++|.||++|||+|+...|.++++.++++++ +.+..|+.|. .. . .. ++
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~-------~~-~---~~-~~---------------- 70 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP-G---TA-PK---------------- 70 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC-------Ch-h---HH-Hh----------------
Confidence 3679999999999999999999999999999864 8888887662 11 1 11 11
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCC
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
+++...|+++++ ++|+++.++.|..+.+++++.|++.
T Consensus 71 ------------------~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 71 ------------------YGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred ------------------CCCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHh
Confidence 144555998888 6999999999998888888887654
No 72
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.43 E-value=4.3e-14 Score=97.16 Aligned_cols=106 Identities=22% Similarity=0.179 Sum_probs=67.4
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHH---HHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeecc
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVL---YEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDV 141 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~---~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 141 (201)
+||++|+.||++|||.|+...+.+.+. ...+++ ++.++.++++ ++.+...++...+ +...+...
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~---- 70 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNID-------DSRDESEAVLDFD-GQKNVRLS---- 70 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESH-------SHHHHHHHHHSHT-CHSSCHHH----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecC-------Ccccccccccccc-cchhhhHH----
Confidence 579999999999999999988888864 334433 5889999876 2333444454321 32211110
Q ss_pred CCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 142 NGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
..++... .+|.++|+++++|++|+++.++.|..+++++.+.|
T Consensus 71 ----~~~l~~~----------~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 71 ----NKELAQR----------YGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp ----HHHHHHH----------TT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ----HHHHHHH----------cCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 0111111 37888899999999999999999999999887754
No 73
>PHA02278 thioredoxin-like protein
Probab=99.43 E-value=8.5e-13 Score=89.28 Aligned_cols=87 Identities=14% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
+++++||+|||+||++|+...|.+.++.+++.. .+.++.|++|. +.. ...+.. ++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~------~~~-d~~~l~-~~---------------- 67 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDA------EDV-DREKAV-KL---------------- 67 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCc------ccc-ccHHHH-HH----------------
Confidence 578999999999999999999999999887543 36788888762 100 011111 11
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhh
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEV 195 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~ 195 (201)
++|.++|+.+++ ++|+.+.+..|..+.+++.+
T Consensus 68 ------------------~~I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 68 ------------------FDIMSTPVLIGY-KDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred ------------------CCCccccEEEEE-ECCEEEEEEeCCCCHHHHHh
Confidence 256666986555 68999999999887776554
No 74
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.42 E-value=1e-12 Score=88.67 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=65.2
Q ss_pred CCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCC
Q 028944 64 YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (201)
Q Consensus 64 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (201)
.+|+ .||.||++||++|+...|.++++.+.++..++.+..|..+. .++ .. ++
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~~----~~-~~--------------- 66 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------EPG----LS-GR--------------- 66 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------CHh----HH-HH---------------
Confidence 3565 58999999999999999999999998776568888887651 111 11 11
Q ss_pred CCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccC
Q 028944 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 199 (201)
++|...|+++++ ++|++ .++.|..+.+++.+.+++
T Consensus 67 -------------------~~i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 67 -------------------FFVTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred -------------------cCCcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHhC
Confidence 145555998876 88986 688999888888877754
No 75
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.41 E-value=1.7e-12 Score=88.97 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=66.6
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
+|++++|.||++||++|+...|.+.++.+.++++++.+..|..|. +. ..+..+.
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-------~~---~~~~~~~---------------- 73 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-------EQ---REFAKEE---------------- 73 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-------cc---hhhHHhh----------------
Confidence 578999999999999999999999999999997779999988661 00 0111111
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCC-CCchhhhhc
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPT-TSPLKIEVG 196 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~-~~~~~l~~~ 196 (201)
+++...|++++++++++....|.|. .+.+.+...
T Consensus 74 ------------------~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f 108 (109)
T cd02993 74 ------------------LQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMF 108 (109)
T ss_pred ------------------cCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhh
Confidence 1445559999999888888889985 577666554
No 76
>PRK10996 thioredoxin 2; Provisional
Probab=99.40 E-value=1.8e-12 Score=92.68 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=70.0
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
++++++|+||++||++|+...+.+.++.+++.+ ++.++.|+.+. . . +.. ++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~-------~-~---~l~-~~---------------- 101 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA-------E-R---ELS-AR---------------- 101 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC-------C-H---HHH-Hh----------------
Confidence 478999999999999999999999999999876 48888887651 1 1 112 11
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCCC
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 201 (201)
++|..+|+++++ ++|+++.++.|..+.+.+++.|++++
T Consensus 102 ------------------~~V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 102 ------------------FRIRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred ------------------cCCCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 144555997776 59999999999999889999988764
No 77
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.39 E-value=4e-12 Score=88.74 Aligned_cols=98 Identities=9% Similarity=0.040 Sum_probs=67.8
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.|+..+|+|+++|||+|+...|.|.++.++. ++.+.-|++|.....+..+.+++.++. ++++...
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~~----------- 86 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIPT----------- 86 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-HHcCCcc-----------
Confidence 3678999999999999999999999999883 366777777632111223344667776 3334332
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC-Cchhhhhcc
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT-SPLKIEVGT 197 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~-~~~~l~~~l 197 (201)
++.++|+++++ ++|+.+.+..|.. +.+++.+.+
T Consensus 87 -------------------~i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 87 -------------------SFMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred -------------------cCCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHHh
Confidence 34445997766 7999999988854 566676544
No 78
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.38 E-value=3.5e-12 Score=86.46 Aligned_cols=85 Identities=20% Similarity=0.104 Sum_probs=64.9
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.+++++|.||++||++|+...|.+.++.+++.+ .+.+..|+.+ .. .+.. ++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~--------~~---~~~~-~~---------------- 68 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQ--------KY---ESLC-QQ---------------- 68 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECC--------ch---HHHH-HH----------------
Confidence 457999999999999999999999999999965 4888888765 11 1222 21
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCC-chhhhhc
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTS-PLKIEVG 196 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~-~~~l~~~ 196 (201)
++|...|+++++.++|+.+..|.|..+ .+++.+.
T Consensus 69 ------------------~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 69 ------------------ANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred ------------------cCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 144555999999776688999999886 7777654
No 79
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.37 E-value=4.6e-12 Score=84.92 Aligned_cols=86 Identities=13% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.+++++++||++||+.|+...+.+.++.+++.+ ++.++.|+.|. .+ + .. ++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~-------~~-~---l~-~~---------------- 62 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE-------DQ-E---IA-EA---------------- 62 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC-------CH-H---HH-HH----------------
Confidence 468999999999999999999999999999875 48888887651 11 1 11 11
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
.++.++|++++++ +|+++.++.|..+.+++.+.|+
T Consensus 63 ------------------~~v~~vPt~~i~~-~g~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 63 ------------------AGIMGTPTVQFFK-DKELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred ------------------CCCeeccEEEEEE-CCeEEEEEeCCccHHHHHHhhC
Confidence 1444559999995 8999999999988888877664
No 80
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.4e-12 Score=101.61 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=72.4
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
+-+|+||+||++||++|+..+|.|.++..+|+++ +.+.-|++|. .+ .+ . .+
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~-------~p-~v---A-aq---------------- 92 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA-------EP-MV---A-AQ---------------- 92 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc-------ch-hH---H-HH----------------
Confidence 4479999999999999999999999999999986 9999998872 11 11 1 11
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCC
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
.+|.++|++|++ ++|+-+.-+.|..+.+.+++.|++.
T Consensus 93 ------------------fgiqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 93 ------------------FGVQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred ------------------hCcCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHh
Confidence 167777998888 7999999999999888899888765
No 81
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.37 E-value=3.1e-12 Score=87.98 Aligned_cols=85 Identities=15% Similarity=0.067 Sum_probs=64.7
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.++++||.||++||++|+...|.+.++.+++++. +.+..|+.|. + .++ +.++
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~-------~-~~l---~~~~---------------- 79 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW-------P-QGK---CRKQ---------------- 79 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC-------C-hHH---HHHh----------------
Confidence 4689999999999999999999999999999765 8888887661 1 111 1111
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhc
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVG 196 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~ 196 (201)
++|.+.|++.++ ++|+....|.|..+.+++...
T Consensus 80 ------------------~~I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 80 ------------------KHFFYFPVIHLY-YRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred ------------------cCCcccCEEEEE-ECCccceEEeCCCCHHHHHhh
Confidence 134444887777 789888889999988877654
No 82
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.36 E-value=2e-12 Score=87.13 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=63.3
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHHhcC--CCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKN--QDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
++++|.||++||++|+...|.++++++++++ .++.++.|..+. .. ... ++
T Consensus 17 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--------~~---~~~-~~---------------- 68 (102)
T cd03005 17 GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--------HR---ELC-SE---------------- 68 (102)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--------Ch---hhH-hh----------------
Confidence 3599999999999999999999999999976 358888886541 11 111 11
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
+++...|+++++ ++|+.+.++.|..+.+++.+.|
T Consensus 69 ------------------~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 69 ------------------FQVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred ------------------cCCCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhhC
Confidence 145555998888 6898888999999887776543
No 83
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.33 E-value=7e-12 Score=84.36 Aligned_cols=89 Identities=18% Similarity=0.074 Sum_probs=68.9
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC-CeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (201)
++++++|.||++||++|+...+.++++.+.++.. ++.+..+..+. . .... ++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------~---~~~~-~~--------------- 64 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------E---KDLA-SR--------------- 64 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--------h---HHHH-Hh---------------
Confidence 6889999999999999999999999999999865 37777776541 0 1111 11
Q ss_pred CCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCC
Q 028944 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
+++...|+++++++++. ...+.|..+.+++...+++.
T Consensus 65 -------------------~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 65 -------------------FGVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred -------------------CCCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 14555599999998887 67889998888898888764
No 84
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.33 E-value=4.6e-12 Score=86.52 Aligned_cols=88 Identities=17% Similarity=0.091 Sum_probs=66.1
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.|+++||.||++||++|+...|.+.++.+++.+ .+.++.|+.+. + +..+.. +.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~------~---~~~~~~-~~---------------- 69 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDE------D---KNKPLC-GK---------------- 69 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCc------c---ccHHHH-HH----------------
Confidence 468999999999999999999999999999975 48888888762 1 111122 11
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCC----cEEEecCCCCCchhhhhcc
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEG----KVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G----~i~~~~~g~~~~~~l~~~l 197 (201)
+++...|+++++++++ .....|.|..+.+++.+.|
T Consensus 70 ------------------~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 70 ------------------YGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred ------------------cCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 1455559999998876 3567789988888877665
No 85
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.32 E-value=7e-12 Score=96.01 Aligned_cols=85 Identities=20% Similarity=0.103 Sum_probs=64.5
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKN 145 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 145 (201)
+++++|+||++||++|+...|.++++.+++++. +.+..|..+ .. .+.. ++
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~--------~~---~~l~-~~----------------- 101 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDAT--------RA---LNLA-KR----------------- 101 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCc--------cc---HHHH-HH-----------------
Confidence 578999999999999999999999999999764 777766543 11 1111 11
Q ss_pred chhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 146 AAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
++|..+|++++++ +|+++..+.|..+.+++.+.++
T Consensus 102 -----------------~~I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~ 136 (224)
T PTZ00443 102 -----------------FAIKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFAL 136 (224)
T ss_pred -----------------cCCCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHH
Confidence 2555569999997 7999888888888888877654
No 86
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.32 E-value=6.3e-12 Score=85.33 Aligned_cols=87 Identities=15% Similarity=0.065 Sum_probs=62.7
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCC--eEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQD--FEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (201)
++++++|.||++||++|+.+.|.++++++++++++ +.+..++.+ ... +.. ++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~--------~~~---~~~-~~-------------- 67 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT--------AYS---SIA-SE-------------- 67 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc--------cCH---hHH-hh--------------
Confidence 45799999999999999999999999999997543 666666543 100 111 11
Q ss_pred CCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccC
Q 028944 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 199 (201)
++|.++|++++++ +| ....+.|..+.+.+.+.+++
T Consensus 68 --------------------~~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 68 --------------------FGVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred --------------------cCCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHh
Confidence 2566669999994 45 44678898888888777654
No 87
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.6e-12 Score=84.57 Aligned_cols=84 Identities=23% Similarity=0.239 Sum_probs=66.8
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKN 145 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 145 (201)
+|.++|+|+++||++|+...|.+.++..+|.+ +.++.|++| . +.+..++
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~~~------------------ 69 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVAKE------------------ 69 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHHHh------------------
Confidence 69999999999999999999999999999987 899999877 1 4444422
Q ss_pred chhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccC
Q 028944 146 AAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 199 (201)
.++..+|+..++ ++|+.+..+.|... +++++.+++
T Consensus 70 -----------------~~V~~~PTf~f~-k~g~~~~~~vGa~~-~~l~~~i~~ 104 (106)
T KOG0907|consen 70 -----------------FNVKAMPTFVFY-KGGEEVDEVVGANK-AELEKKIAK 104 (106)
T ss_pred -----------------cCceEeeEEEEE-ECCEEEEEEecCCH-HHHHHHHHh
Confidence 155556886666 89999999999774 477776654
No 88
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.29 E-value=1.1e-11 Score=88.02 Aligned_cols=43 Identities=9% Similarity=-0.055 Sum_probs=39.3
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
.++++||.||++||++|+...|.|.++.+++++. +.|+-|++|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVD 64 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDIT 64 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECC
Confidence 5689999999999999999999999999999765 788899887
No 89
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.28 E-value=1.9e-11 Score=88.21 Aligned_cols=44 Identities=14% Similarity=0.025 Sum_probs=40.7
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+++++||.||++||++|+...|.++++.+++.+.++.++.|+.|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd 89 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG 89 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC
Confidence 46799999999999999999999999999998767999999987
No 90
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.27 E-value=2.7e-11 Score=81.17 Aligned_cols=88 Identities=22% Similarity=0.220 Sum_probs=68.4
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKN 145 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 145 (201)
+++++|.||++||++|+...+.++++.+++.+ ++.++.|..+. +. +.. +.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------~~----~~~-~~----------------- 63 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE-------NP----DIA-AK----------------- 63 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC-------CH----HHH-HH-----------------
Confidence 46999999999999999999999999988864 48899887651 11 111 11
Q ss_pred chhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCCC
Q 028944 146 AAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 201 (201)
+++...|+++++ ++|+++..+.|..+.+++.+.|++.|
T Consensus 64 -----------------~~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 64 -----------------YGIRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred -----------------cCCCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 144455998888 68999999999998888888887643
No 91
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.25 E-value=3.4e-11 Score=82.22 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=62.4
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC-----CeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeee
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-----DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKI 139 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-----~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (201)
.+++++|.||++||++|+...|.++++.+.+++. .+.+..|+.|. . .+.. ++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-------~----~~l~-~~----------- 73 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-------E----SDIA-DR----------- 73 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-------C----HHHH-Hh-----------
Confidence 3579999999999999999999999999887432 37777777651 1 1112 22
Q ss_pred ccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCc-EEEecCCCCCchhhhhcc
Q 028944 140 DVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGK-VVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 140 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~-i~~~~~g~~~~~~l~~~l 197 (201)
++|...|+++++ ++|+ ....|.|..+.+.+.+.|
T Consensus 74 -----------------------~~v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 74 -----------------------YRINKYPTLKLF-RNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred -----------------------CCCCcCCEEEEE-eCCcCcceecCCCCCHHHHHhhC
Confidence 145555998888 6888 457788988888776653
No 92
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.25 E-value=3.7e-11 Score=81.17 Aligned_cols=87 Identities=22% Similarity=0.184 Sum_probs=62.2
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC-CeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (201)
++++++|.||++||++|+...|.++++.+.+++. .+.++.|..+. + ...... ++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~---~~~~~~-~~--------------- 70 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK------P---EHDALK-EE--------------- 70 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC------C---ccHHHH-Hh---------------
Confidence 4679999999999999999999999999998743 46676666541 0 011111 11
Q ss_pred CCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhc
Q 028944 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVG 196 (201)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~ 196 (201)
+++...|+++++ ++|+++..+.|..+.+.+.+.
T Consensus 71 -------------------~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 71 -------------------YNVKGFPTFKYF-ENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred -------------------CCCccccEEEEE-eCCCeeEEeCCCCCHHHHHhh
Confidence 144555985555 689999999999988877654
No 93
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.24 E-value=2.5e-11 Score=81.69 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=69.5
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.++++||.|+++||++|+...|.+.++.+++++ ++.++.|..+. . +... ++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------~----~~l~-~~---------------- 66 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------N----KELC-KK---------------- 66 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------S----HHHH-HH----------------
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-------c----chhh-hc----------------
Confidence 368999999999999999999999999999987 69999997651 1 2223 22
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccC
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 199 (201)
+++..+|+++++ ++|+...++.|..+.+.+.+.|++
T Consensus 67 ------------------~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 67 ------------------YGVKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp ------------------TTCSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred ------------------cCCCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 145555997777 578888899999999999888763
No 94
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.22 E-value=5.1e-11 Score=80.53 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=65.5
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcC-CCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKN-QDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
++++++.||++||++|+...+.+.++.++++. .++.++.+..+. + ..+.. ++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--------~--~~~~~-~~---------------- 70 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE--------A--NKDLA-KK---------------- 70 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC--------c--chhhH-Hh----------------
Confidence 57999999999999999999999999999973 358888887551 0 11111 11
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
.++.++|++++++++|+....+.|..+.+++.+.|
T Consensus 71 ------------------~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 71 ------------------YGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred ------------------CCCCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 14455599999998878888899988887776543
No 95
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.21 E-value=1.7e-11 Score=85.03 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=34.7
Q ss_pred CCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 62 SGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 62 ~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+..++|++||.||++||++|+.+.|.+.+....... +..++.|.+|
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd 60 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE 60 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence 344689999999999999999999999997665542 2344455544
No 96
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.20 E-value=1e-10 Score=78.12 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=60.8
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKN 145 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 145 (201)
+++++|.||++||++|+...+.+.++.+++ ..++.++.|..+ +..+.. ++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~-----------~~~~~~-~~----------------- 63 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAE-----------ELPEIS-EK----------------- 63 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccc-----------cCHHHH-Hh-----------------
Confidence 689999999999999999999999999997 335888887543 111122 11
Q ss_pred chhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 146 AAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
+++...|+++++ ++|+++.++.|.. ++++.+.|
T Consensus 64 -----------------~~i~~~Pt~~~~-~~g~~~~~~~g~~-~~~l~~~~ 96 (97)
T cd02984 64 -----------------FEITAVPTFVFF-RNGTIVDRVSGAD-PKELAKKV 96 (97)
T ss_pred -----------------cCCccccEEEEE-ECCEEEEEEeCCC-HHHHHHhh
Confidence 144445997777 5899999988865 55666554
No 97
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.2e-10 Score=79.71 Aligned_cols=123 Identities=22% Similarity=0.237 Sum_probs=89.8
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeec-CCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 120 (201)
+|+.+|+|++.+.+.+.+++.++.||..++..+.+ .-|.|-.+...+++...++.+ ..|++||.| .+-.
T Consensus 20 vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D--------LPFA 89 (158)
T COG2077 20 VGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD--------LPFA 89 (158)
T ss_pred cCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------ChhH
Confidence 89999999999999999999999999777766654 667799999999999988865 899999987 7889
Q ss_pred HHHHHHhhcCcc-cceeeeeccCCCCchhhHHHHHhhcC--CcccccccccceEEEECCCCcEEEe
Q 028944 121 IQEVACTMFKAE-FPIFDKIDVNGKNAAPIYKFLKSEKG--GFLGDAIKWNFTKFLVNKEGKVVER 183 (201)
Q Consensus 121 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~P~~~lid~~G~i~~~ 183 (201)
.++|..+ .|++ ...+ .|......-+.|+....+.+ |... .++|++|.+|++.+.
T Consensus 90 q~RfC~a-eGi~nv~~l--Sd~r~~~Fge~yGv~I~egpL~gLlA------RaV~V~De~g~V~y~ 146 (158)
T COG2077 90 QKRFCGA-EGIENVITL--SDFRDRAFGENYGVLINEGPLAGLLA------RAVFVLDENGKVTYS 146 (158)
T ss_pred Hhhhhhh-cCcccceEh--hhhhhhhhhHhhCEEeccccccCeee------eEEEEEcCCCcEEEE
Confidence 9999966 4776 3333 22222222222322222111 1211 467999999999877
No 98
>PTZ00051 thioredoxin; Provisional
Probab=99.18 E-value=1.7e-10 Score=77.27 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=58.4
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.+++++++||++||++|+...+.+.++.+++. ++.++.|+.+ . ..+.. ++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~--------~---~~~~~-~~---------------- 66 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVD--------E---LSEVA-EK---------------- 66 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECc--------c---hHHHH-HH----------------
Confidence 46899999999999999999999999999875 3778887654 1 11222 11
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhh
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~ 194 (201)
+++..+|+++++ ++|+++.++.|.. .++++
T Consensus 67 ------------------~~v~~~Pt~~~~-~~g~~~~~~~G~~-~~~~~ 96 (98)
T PTZ00051 67 ------------------ENITSMPTFKVF-KNGSVVDTLLGAN-DEALK 96 (98)
T ss_pred ------------------CCCceeeEEEEE-eCCeEEEEEeCCC-HHHhh
Confidence 144555986555 7999999999964 55554
No 99
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.18 E-value=6.8e-11 Score=102.47 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=69.3
Q ss_pred CCCCcEEEEEEeecCCCCcHHhHHHH---HHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeee
Q 028944 63 GYRGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKI 139 (201)
Q Consensus 63 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (201)
+.+||+++|+||++||++|+...+.. .++.++++ ++.++.|++++ +.++.++++ ++|
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~~---------- 530 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KHY---------- 530 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HHc----------
Confidence 34689999999999999999887764 56777774 47888887662 223334444 221
Q ss_pred ccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEE--EecCCCCCchhhhhcccCC
Q 028944 140 DVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVV--ERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 140 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~--~~~~g~~~~~~l~~~l~~l 200 (201)
++...|+++++|++|+++ .++.|..+.+++.+.++++
T Consensus 531 ------------------------~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 531 ------------------------NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred ------------------------CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 444459999999999984 6788999999998888764
No 100
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.16 E-value=1.2e-10 Score=80.71 Aligned_cols=88 Identities=9% Similarity=0.019 Sum_probs=66.7
Q ss_pred CcEEEEEEeecCCCC--cH--HhHHHHHHHHHHhc-CCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeec
Q 028944 66 GKVLLVVNVASKCGL--TQ--SNYKELNVLYEKYK-NQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (201)
Q Consensus 66 gk~~lv~f~~~~C~~--C~--~~~~~l~~~~~~~~-~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (201)
+.++|++||++||++ |+ ...|.+.++..++- ..++.+..|++|. . .+.+ ++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-------~----~~La-~~------------ 82 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-------D----AKVA-KK------------ 82 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-------C----HHHH-HH------------
Confidence 359999999999987 99 78888999988882 2359999998772 1 1112 22
Q ss_pred cCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCCC
Q 028944 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 201 (201)
++|.++|+++++ ++|+++. +.|..+.+.+.+.|++++
T Consensus 83 ----------------------~~I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 83 ----------------------LGLDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ----------------------cCCccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 255566998777 6999987 999999999998887653
No 101
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.15 E-value=2.3e-10 Score=76.29 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=65.3
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhc-CCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYK-NQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (201)
++++++|.||++||++|+...+.+.++.+.++ ..++.++.|+.+ . ..+.. ++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~---~~~~~-~~--------------- 66 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--------A---NNDLC-SE--------------- 66 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--------c---hHHHH-Hh---------------
Confidence 44699999999999999999999999999995 346888888754 1 11222 21
Q ss_pred CCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhc
Q 028944 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVG 196 (201)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~ 196 (201)
++|...|++++++++|+...++.|..+.+++.+.
T Consensus 67 -------------------~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 67 -------------------YGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred -------------------CCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 1445559999999887888888888877777654
No 102
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.15 E-value=3.7e-10 Score=76.81 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=64.1
Q ss_pred CCcEEEEEEeecC--CCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccC
Q 028944 65 RGKVLLVVNVASK--CGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (201)
Q Consensus 65 ~gk~~lv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (201)
.|.++||.||++| ||+|+...|.|.++.++|+++ +.++-|++|+ .+ +.+ ++
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~-------~~----~la-~~-------------- 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD-------EQ----ALA-AR-------------- 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC-------CH----HHH-HH--------------
Confidence 5689999999997 999999999999999999875 8888888762 22 112 22
Q ss_pred CCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhh
Q 028944 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194 (201)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~ 194 (201)
++|.++|+.+++ ++|+++....|..+.+++.
T Consensus 79 --------------------f~V~sIPTli~f-kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 79 --------------------FGVLRTPALLFF-RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred --------------------cCCCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence 256666986666 6899999999988877654
No 103
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.14 E-value=3.9e-10 Score=76.03 Aligned_cols=85 Identities=16% Similarity=0.091 Sum_probs=62.5
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKN 145 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 145 (201)
+++++|.||++||++|+...|.+.++.+++.++ +.+..+..+ +.. +.. ++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~--------~~~---~~~-~~----------------- 67 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDAD--------VHQ---SLA-QQ----------------- 67 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECc--------chH---HHH-HH-----------------
Confidence 467999999999999999999999999998754 888888654 111 112 11
Q ss_pred chhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 146 AAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
.+|.+.|++++++++.+....|.|..+.+++.+.+
T Consensus 68 -----------------~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 68 -----------------YGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred -----------------CCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 14445599999976546667788988888776543
No 104
>PTZ00102 disulphide isomerase; Provisional
Probab=99.13 E-value=2.3e-10 Score=97.42 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=63.0
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC--CeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (201)
+++.++|.||++||++|+...|.+.++.+.+.+. ++.+..|..+. .. +.. ++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-------~~----~l~-~~-------------- 101 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-------EM----ELA-QE-------------- 101 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-------CH----HHH-Hh--------------
Confidence 4689999999999999999999999998888654 37777775441 11 111 11
Q ss_pred CCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCC
Q 028944 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
++|...|++++++.+ +.+ .|.|..+.+.+.+.+++.
T Consensus 102 --------------------~~i~~~Pt~~~~~~g-~~~-~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 102 --------------------FGVRGYPTIKFFNKG-NPV-NYSGGRTADGIVSWIKKL 137 (477)
T ss_pred --------------------cCCCcccEEEEEECC-ceE-EecCCCCHHHHHHHHHHh
Confidence 144455998888754 444 788888888887776543
No 105
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.6e-10 Score=81.35 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=97.2
Q ss_pred CCCcccceEEecCCCCeeecCCCCCc-EE-EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHH
Q 028944 42 APKSIYDFTVKDIRGNDVSLSGYRGK-VL-LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~~~gk-~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 119 (201)
.|+.+|+|+..+..| .+.+.++.|. |. |+..-+...|.|..++..+.+++.+|..+|+..++.|+| +.+
T Consensus 8 lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d--------~ve 78 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD--------DVE 78 (224)
T ss_pred ccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh--------hHH
Confidence 789999999998888 7889998774 43 334445677889999999999999999999999999998 556
Q ss_pred HHHHHHHh--------hcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCC---
Q 028944 120 EIQEVACT--------MFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT--- 188 (201)
Q Consensus 120 ~~~~~~~~--------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~--- 188 (201)
..+.|+++ .+..+||++ .|.+.+.+-. +..+-....+..|.+ .....+|+|||+.+++-.+.-+.
T Consensus 79 sH~~Wi~DIks~~~~~~~~~~yPII--aD~~rela~~-l~MlD~~e~~~~~~~-~T~Ravfvi~pdkKirLs~lYP~ttG 154 (224)
T KOG0854|consen 79 SHKDWIKDIKSYAKVKNHSVPYPII--ADPNRELAFL-LNMLDPEEKKNIGDG-KTVRAVFVIDPDKKIRLSFLYPSTTG 154 (224)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCee--cCCchhhhhh-hcccCHhHcCCCCCC-ceEEEEEEECCCceEEEEEEcccccC
Confidence 66655542 123778888 5555554422 322222222222222 22357799999999987743222
Q ss_pred -Cchhhhhccc
Q 028944 189 -SPLKIEVGTT 198 (201)
Q Consensus 189 -~~~~l~~~l~ 198 (201)
+.+++...|.
T Consensus 155 RN~dEiLRvid 165 (224)
T KOG0854|consen 155 RNFDEILRVID 165 (224)
T ss_pred cCHHHHHHHHH
Confidence 4455554443
No 106
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.4e-10 Score=80.81 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=92.6
Q ss_pred CCCcccceEE---ecCCCCeeecCCCCCcEEEEEEeecCCCC-cHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCC
Q 028944 42 APKSIYDFTV---KDIRGNDVSLSGYRGKVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS 117 (201)
Q Consensus 42 ~~~~~p~f~l---~~~~G~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~ 117 (201)
...++|+|.- .|-.-+.+++++++||++++.|+.-.-.. |+.+.-.+.+.++++++.|.+|+++|+| +
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D--------S 77 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD--------S 77 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------c
Confidence 4455677774 33344678999999999999998766655 9999999999999999999999999988 8
Q ss_pred HHHHHHHHH---hhcCc---ccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEec
Q 028944 118 NEEIQEVAC---TMFKA---EFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (201)
Q Consensus 118 ~~~~~~~~~---~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (201)
...+.+|+. ++-|+ ++|++ .|.+....+ -|+.+.... -......||||++|.+++.-
T Consensus 78 ~fshlAW~ntprk~gGlg~~~iPll--sD~~~~Isr-dyGvL~~~~-------G~~lRglfIId~~gi~R~it 140 (196)
T KOG0852|consen 78 VFSHLAWINTPRKQGGLGPLNIPLL--SDLNHEISR-DYGVLKEDE-------GIALRGLFIIDPDGILRQIT 140 (196)
T ss_pred hhhhhhHhcCchhhCCcCcccccee--eccchhhHH-hcCceecCC-------CcceeeeEEEccccceEEee
Confidence 899999985 22344 48888 566655543 344443321 12225669999999998853
No 107
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.10 E-value=7.1e-10 Score=75.46 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=39.1
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
.+|++||.|+++||++|+..-|.|.++.+++++. +.+..|.+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 5799999999999999999999999999999754 888888766
No 108
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.07 E-value=1.1e-09 Score=70.69 Aligned_cols=81 Identities=9% Similarity=0.081 Sum_probs=59.1
Q ss_pred EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCCchh
Q 028944 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAP 148 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 148 (201)
.|..||++||++|+...+.++++.++++.+ +.++.|+.+. .++.. ++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~-------~~~~~-----~~-------------------- 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME-------NPQKA-----ME-------------------- 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc-------CHHHH-----HH--------------------
Confidence 467899999999999999999999998654 8888887651 22111 11
Q ss_pred hHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCCC
Q 028944 149 IYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 149 ~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 201 (201)
+++..+|++++ +|+. ++.|..+.+++.+.++++|
T Consensus 49 --------------~~v~~vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 49 --------------YGIMAVPAIVI---NGDV--EFIGAPTKEELVEAIKKRL 82 (82)
T ss_pred --------------cCCccCCEEEE---CCEE--EEecCCCHHHHHHHHHhhC
Confidence 14555599765 6764 5678778888998888765
No 109
>PTZ00102 disulphide isomerase; Provisional
Probab=99.06 E-value=4.6e-10 Score=95.63 Aligned_cols=104 Identities=18% Similarity=0.056 Sum_probs=74.2
Q ss_pred EecCCCCeeecC-CCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC-CeEEEEeecCCCCCCCCCCHHHHHHHHHhh
Q 028944 51 VKDIRGNDVSLS-GYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAFPCNQFAGQEPGSNEEIQEVACTM 128 (201)
Q Consensus 51 l~~~~G~~~~l~-~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 128 (201)
+....|..+... .-.|+++||+||++||++|+.+.|.++++.+.+++. .+.+..|+.+. +. .. . +
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~-------~~-~~---~-~- 425 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA-------NE-TP---L-E- 425 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC-------Cc-cc---h-h-
Confidence 444556655432 235789999999999999999999999999998764 46676666441 00 00 0 0
Q ss_pred cCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCC
Q 028944 129 FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 129 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
. .++.+.|++++++++|++...+.|..+.+.+.+.|++.
T Consensus 426 -------------------~--------------~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 426 -------------------E--------------FSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKH 464 (477)
T ss_pred -------------------c--------------CCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHc
Confidence 0 14555599999998888767899999888888877653
No 110
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.04 E-value=1.8e-09 Score=72.78 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=37.6
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcC-CCeEEEEeecC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKN-QDFEVLAFPCN 108 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~vv~vs~d 108 (201)
+++++|+||++||++|+.+.|.+.++.+.+++ ..+.+..|+.+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 58999999999999999999999999999976 35777777654
No 111
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.04 E-value=1.9e-09 Score=74.23 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=36.2
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+++++|.||++||++|+...|.++++.+++.+ +.++-|..+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~ 64 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAE 64 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEch
Confidence 58999999999999999999999999999863 778877654
No 112
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.03 E-value=1.1e-09 Score=91.92 Aligned_cols=92 Identities=18% Similarity=0.102 Sum_probs=66.3
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
+++++||.||++||++|+.+.|.+.++.++++++++.++.|.+|. + .. ....++
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~------~-~~---~~~~~~---------------- 423 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG------D-QK---EFAKQE---------------- 423 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC------C-cc---HHHHHH----------------
Confidence 578999999999999999999999999999987788999898762 1 10 111111
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecC-CCCCchhhhhcccCC
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYA-PTTSPLKIEVGTTIP 200 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~-g~~~~~~l~~~l~~l 200 (201)
++|...|+++++.+++.-...|. |..+.+.+..+++.+
T Consensus 424 ------------------~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 424 ------------------LQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ------------------cCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 14444588888865443333565 467888888877654
No 113
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.00 E-value=1.8e-09 Score=75.34 Aligned_cols=82 Identities=9% Similarity=-0.039 Sum_probs=52.6
Q ss_pred CCCcEEEEEEeecCCCCcHHhHHHH---HHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeec
Q 028944 64 YRGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (201)
Q Consensus 64 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (201)
-++|+++|+|+++||+.|+.+.+.. .++.+.+. +++.+|-|..+. .++..+.+. +.+..
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~-------~~~~~~~~~-~~~~~--------- 74 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREE-------RPDVDKIYM-NAAQA--------- 74 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCc-------CcHHHHHHH-HHHHH---------
Confidence 3689999999999999999887632 24444443 357777776551 233222233 11000
Q ss_pred cCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEec
Q 028944 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (201)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (201)
. +++.+.|+++++|++|++++..
T Consensus 75 --------~-------------~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 75 --------M-------------TGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred --------h-------------cCCCCCCEEEEECCCCCEEeee
Confidence 0 1344449999999999999774
No 114
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.00 E-value=2.7e-09 Score=69.69 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=61.7
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCCc
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNA 146 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (201)
++++|.||++||+.|+...+.++++.++ ..++.++.|+.+. .. +.. +.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~-------~~----~~~-~~------------------ 58 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE-------NP----ELA-EE------------------ 58 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC-------Ch----hHH-Hh------------------
Confidence 7999999999999999999999999888 3468888887651 11 111 11
Q ss_pred hhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 147 APIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
+++...|++++++ +|+++..+.|..+.+++.+.|
T Consensus 59 ----------------~~v~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 59 ----------------YGVRSIPTFLFFK-NGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred ----------------cCcccccEEEEEE-CCEEEEEEecCCCHHHHHHHh
Confidence 1344459988774 788888999988777777665
No 115
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.99 E-value=1.2e-09 Score=83.56 Aligned_cols=101 Identities=22% Similarity=0.142 Sum_probs=75.1
Q ss_pred eecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeee
Q 028944 59 VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDK 138 (201)
Q Consensus 59 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (201)
-.+.++.+++-|++|+.+.|+.|..+.|.|+.+.++| |+.|+.||+|. ..-..||...
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG------------------~~~~~fp~~~- 170 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDG------------------RPIPSFPNPR- 170 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCC------------------CCCcCCCCCC-
Confidence 3466677899999999999999999999999999998 59999999983 1112344331
Q ss_pred eccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCC-cEEEecCCCCCchhhhhcc
Q 028944 139 IDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEG-KVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G-~i~~~~~g~~~~~~l~~~l 197 (201)
. +...... .+|..+|++||+++++ ++.....|.++.++|.+.|
T Consensus 171 -~-~~g~~~~--------------l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 171 -P-DPGQAKR--------------LGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred -C-CHHHHHH--------------cCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 1 1111111 1677889999999988 7777789999888887654
No 116
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.97 E-value=1.8e-09 Score=74.72 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=39.1
Q ss_pred CCcEEEEEEee-------cCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVA-------SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+|++++|.||| +|||+|+...|.+.++.+++++ ++.++.|.+|
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd 69 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVG 69 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcC
Confidence 57899999999 9999999999999999999974 4889999876
No 117
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.96 E-value=3.9e-09 Score=72.66 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=37.3
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
++++++|.||++||++|+...|.+.++.+++++ +.++-|..+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence 357999999999999999999999999999864 788888765
No 118
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.95 E-value=3.4e-09 Score=73.01 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=34.8
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
++.++|+||++||++|+...|.+.++.+++ + .+.+..|..|
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d 62 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFD 62 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCC
Confidence 456888899999999999999999999887 3 3888888766
No 119
>PLN02309 5'-adenylylsulfate reductase
Probab=98.91 E-value=6.2e-09 Score=87.43 Aligned_cols=92 Identities=20% Similarity=0.105 Sum_probs=66.9
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
+++++||.||++||++|+.+.|.+.++.+++...++.+..|+.|. .. +....++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-------~~---~~la~~~---------------- 417 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-------DQ---KEFAKQE---------------- 417 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------cc---hHHHHhh----------------
Confidence 578999999999999999999999999999987789999997651 11 1122111
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCC-CCCchhhhhcccCC
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAP-TTSPLKIEVGTTIP 200 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g-~~~~~~l~~~l~~l 200 (201)
++|...|+++++.++.+-...|.| ..+.+.|...++.+
T Consensus 418 ------------------~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 418 ------------------LQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ------------------CCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 144455998888655444445654 56788888887764
No 120
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.91 E-value=3.6e-09 Score=80.57 Aligned_cols=140 Identities=16% Similarity=0.211 Sum_probs=96.2
Q ss_pred CCCcccceEEecCCCCe-eecCCCC--CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC-CeEEEEee----cCCCC--
Q 028944 42 APKSIYDFTVKDIRGND-VSLSGYR--GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAFP----CNQFA-- 111 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~-~~l~~~~--gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~vs----~d~~~-- 111 (201)
.|..||+..+.+.+|+. .++-|+. ++|+|++|.+-.||+=+..++.++++.++|++. ++.+|-|. .|.+-
T Consensus 75 ~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~ 154 (237)
T PF00837_consen 75 LGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFG 154 (237)
T ss_pred CCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCC
Confidence 78999999999999999 8899983 589999999999999999999999999999975 44443321 11100
Q ss_pred -----CCCCCCHHH---HHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccce-EEEECCCCcEEE
Q 028944 112 -----GQEPGSNEE---IQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFT-KFLVNKEGKVVE 182 (201)
Q Consensus 112 -----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~-~~lid~~G~i~~ 182 (201)
-+.+.+.++ +.+.+.++ ...+|++ .|.........|+.. |. .||| .+|+|++
T Consensus 155 ~~~~~i~qh~sledR~~aA~~l~~~-~~~~pi~--vD~mdN~~~~~YgA~---------------PeRlyIi-~~gkv~Y 215 (237)
T PF00837_consen 155 NNPYEIPQHRSLEDRLRAAKLLKEE-FPQCPIV--VDTMDNNFNKAYGAL---------------PERLYII-QDGKVVY 215 (237)
T ss_pred CCceeecCCCCHHHHHHHHHHHHhh-CCCCCEE--EEccCCHHHHHhCCC---------------cceEEEE-ECCEEEE
Confidence 022233333 22333343 4678888 666555555555332 43 4566 5999998
Q ss_pred ec-CCCC--CchhhhhcccCC
Q 028944 183 RY-APTT--SPLKIEVGTTIP 200 (201)
Q Consensus 183 ~~-~g~~--~~~~l~~~l~~l 200 (201)
.. .|+. +++++++.|++.
T Consensus 216 ~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 216 KGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred eCCCCCCcCCHHHHHHHHHhc
Confidence 83 4443 567899888764
No 121
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.90 E-value=3.3e-09 Score=82.55 Aligned_cols=99 Identities=13% Similarity=0.116 Sum_probs=74.0
Q ss_pred cCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeec
Q 028944 61 LSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (201)
Q Consensus 61 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (201)
+.++.+++-|++|+.+.||.|..+.|.|+.+.++| |+.|+.||+|. ..-..||... .
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG------------------~~~p~fp~~~--~ 201 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDG------------------TLIPGLPNSR--S 201 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCC------------------CCCCCCCCcc--C
Confidence 45556789999999999999999999999999998 49999999983 2122244431 1
Q ss_pred cCCCCchhhHHHHHhhcCCcccccccccceEEEECCC-CcEEEecCCCCCchhhhhcc
Q 028944 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKE-GKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~-G~i~~~~~g~~~~~~l~~~l 197 (201)
+...+.+ -++..+|++||++++ +++.-...|.++.++|.+.+
T Consensus 202 -d~gqa~~--------------l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri 244 (256)
T TIGR02739 202 -DSGQAQH--------------LGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERI 244 (256)
T ss_pred -ChHHHHh--------------cCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHH
Confidence 1111111 167778999999998 77777789999998887655
No 122
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.89 E-value=6.2e-09 Score=71.82 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=35.3
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC--CeEEEEeec
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPC 107 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~ 107 (201)
+++++|.||++||++|+.+.|.++++.+++++. .+.+..|+.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~ 62 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDC 62 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEec
Confidence 479999999999999999999999999988643 266666654
No 123
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.88 E-value=1.2e-08 Score=75.68 Aligned_cols=41 Identities=10% Similarity=0.016 Sum_probs=36.6
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
++++||.||++||++|+...|.|.++..+|.. +.++-|+.+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEecc
Confidence 35999999999999999999999999999963 888888765
No 124
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.85 E-value=5.9e-09 Score=80.75 Aligned_cols=99 Identities=10% Similarity=0.064 Sum_probs=73.2
Q ss_pred cCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeec
Q 028944 61 LSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (201)
Q Consensus 61 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (201)
+.++.+++-|++|+.+.||.|..+.|.|+.+.++| |+.|+.||+|. .....||... .
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG------------------~~~p~fp~~~--~ 194 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDG------------------VINPLLPDSR--T 194 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCC------------------CCCCCCCCCc--c
Confidence 44456689999999999999999999999999998 49999999983 1122244331 1
Q ss_pred cCCCCchhhHHHHHhhcCCcccccccccceEEEECCCC-cEEEecCCCCCchhhhhcc
Q 028944 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEG-KVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G-~i~~~~~g~~~~~~l~~~l 197 (201)
+...+.. -++..+|++||++++. +..-...|.++.++|.+.+
T Consensus 195 -d~gqa~~--------------l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri 237 (248)
T PRK13703 195 -DQGQAQR--------------LGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRF 237 (248)
T ss_pred -ChhHHHh--------------cCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHH
Confidence 1111111 1677789999999975 7777789999988887655
No 125
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.84 E-value=1.4e-08 Score=76.23 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=36.5
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
++++||.||++||++|+...+.|.++..+|.. +.++-|.++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad 142 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIST 142 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhH
Confidence 46999999999999999999999999999963 888888643
No 126
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.83 E-value=2.9e-08 Score=63.36 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=30.3
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEe
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~v 105 (201)
.|.||++|||+|+...|.+.++.+++..+ +.++-|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v 36 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKV 36 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEe
Confidence 37899999999999999999999998754 777666
No 127
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.81 E-value=1.4e-08 Score=86.03 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=64.6
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCC--eEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQD--FEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (201)
++++++|.||++||++|+...|.+.++.+.+.+.+ +.++.|..+. . .+.. ++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~-------------- 70 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------E----KDLA-QK-------------- 70 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------c----HHHH-Hh--------------
Confidence 46789999999999999999999999999887655 7888886551 1 1111 21
Q ss_pred CCCchhhHHHHHhhcCCcccccccccceEEEECCCCcE-EEecCCCCCchhhhhcccC
Q 028944 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKV-VERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~ 199 (201)
++|...|+++++ ++|+. +..|.|..+.+.+.+.+++
T Consensus 71 --------------------~~i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~ 107 (462)
T TIGR01130 71 --------------------YGVSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKK 107 (462)
T ss_pred --------------------CCCccccEEEEE-eCCccceeEecCCCCHHHHHHHHHH
Confidence 144445887777 56776 6788888888877776654
No 128
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.80 E-value=4.6e-08 Score=67.39 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=60.6
Q ss_pred CCCCcEEEEEEeecCCCCcHHhHHHH---HHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeee
Q 028944 63 GYRGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKI 139 (201)
Q Consensus 63 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (201)
.-++|+++|+|.++||+.|+.....+ .++.+.+.+ ++..+.+..+ + .+..++. ..
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~-~~----------- 71 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFL-QS----------- 71 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHH-HH-----------
Confidence 34689999999999999999765532 123333322 3555555433 1 1122232 11
Q ss_pred ccCCCCchhhHHHHHhhcCCcccccccccceEEEECC-CCcEEEecCCCCCchhhhhcccC
Q 028944 140 DVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNK-EGKVVERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 140 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ 199 (201)
+++...|+++++|+ +|+++.+..|..+++++...|++
T Consensus 72 -----------------------~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~ 109 (114)
T cd02958 72 -----------------------YKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIE 109 (114)
T ss_pred -----------------------hCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHH
Confidence 13444499999999 89999999999999988877654
No 129
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.80 E-value=2.8e-08 Score=66.94 Aligned_cols=91 Identities=14% Similarity=0.064 Sum_probs=63.9
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKN 145 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 145 (201)
|+++++.|+++||++|....+.+.++.++++++ +.++.|+.| +..+.+ +.+++.-
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~-----------~~~~~~-~~~~i~~------------ 66 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD-----------DFGRHL-EYFGLKE------------ 66 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH-----------hhHHHH-HHcCCCh------------
Confidence 789999999999999999999999999999865 889988654 122233 3333221
Q ss_pred chhhHHHHHhhcCCcccccccccceEEEECCC-CcEEEecCCCCCchhhhhcccCCC
Q 028944 146 AAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKE-GKVVERYAPTTSPLKIEVGTTIPL 201 (201)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~-G~i~~~~~g~~~~~~l~~~l~~ll 201 (201)
...|++++++.+ |+......+..+.+.+.+.++..+
T Consensus 67 --------------------~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 67 --------------------EDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDFL 103 (103)
T ss_pred --------------------hhCCEEEEEecccccccCCCccccCHHHHHHHHHhhC
Confidence 022888888763 544434444457888888877643
No 130
>PTZ00062 glutaredoxin; Provisional
Probab=98.71 E-value=4.1e-08 Score=74.17 Aligned_cols=74 Identities=11% Similarity=-0.033 Sum_probs=57.3
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCCc
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNA 146 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (201)
..+|++||++|||+|+...+.|.++.++|++ +.++.|.. + |
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~--------d----------------~------------- 58 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNL--------A----------------D------------- 58 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEcc--------c----------------c-------------
Confidence 5789999999999999999999999999964 88888741 1 1
Q ss_pred hhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 147 APIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
+|..+|+.+++ ++|+++.++.|.. +.++...++
T Consensus 59 -----------------~V~~vPtfv~~-~~g~~i~r~~G~~-~~~~~~~~~ 91 (204)
T PTZ00062 59 -----------------ANNEYGVFEFY-QNSQLINSLEGCN-TSTLVSFIR 91 (204)
T ss_pred -----------------CcccceEEEEE-ECCEEEeeeeCCC-HHHHHHHHH
Confidence 45555886666 6999999988865 555555443
No 131
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.5e-08 Score=74.57 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=63.5
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (201)
.+|.++|.|.++||++|+...|.+.++..+|+ +..++-|.+| +.+..+..
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd-----------~c~~taa~----------------- 69 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVD-----------ECRGTAAT----------------- 69 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHH-----------Hhhchhhh-----------------
Confidence 45899999999999999999999999999995 4788888665 23222211
Q ss_pred CchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
++|...|+ |+.-.||+-+.++.|.. ...|++.++
T Consensus 70 ------------------~gV~amPT-Fiff~ng~kid~~qGAd-~~gLe~kv~ 103 (288)
T KOG0908|consen 70 ------------------NGVNAMPT-FIFFRNGVKIDQIQGAD-ASGLEEKVA 103 (288)
T ss_pred ------------------cCcccCce-EEEEecCeEeeeecCCC-HHHHHHHHH
Confidence 36777788 56668999999988865 445555543
No 132
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.68 E-value=8.2e-08 Score=67.21 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCCcEEEEEEeecCCCCcHHhHHHH
Q 028944 64 YRGKVLLVVNVASKCGLTQSNYKEL 88 (201)
Q Consensus 64 ~~gk~~lv~f~~~~C~~C~~~~~~l 88 (201)
-++|+++|+|++.||++|+.+-...
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 3689999999999999999887754
No 133
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.66 E-value=8.3e-08 Score=81.26 Aligned_cols=87 Identities=21% Similarity=0.179 Sum_probs=65.0
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcC-C-CeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKN-Q-DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (201)
.++.+||.||++||++|+...|.++++.+.+++ + ++.+..|+.+. + ..+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~------------------n---~~~-------- 413 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA------------------N---DVP-------- 413 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC------------------C---ccC--------
Confidence 468999999999999999999999999999987 3 68888887541 0 000
Q ss_pred CCCchhhHHHHHhhcCCcccccccccceEEEECCCCcE-EEecCCCCCchhhhhcccC
Q 028944 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKV-VERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~ 199 (201)
. + ++...|+++++.+.++. ...+.|..+.+.+.+.|++
T Consensus 414 -----~-~-------------~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 452 (462)
T TIGR01130 414 -----P-F-------------EVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAK 452 (462)
T ss_pred -----C-C-------------CccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHh
Confidence 0 0 34444999999766652 3567888888888877754
No 134
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.59 E-value=1.2e-07 Score=72.73 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=58.4
Q ss_pred CCCcEEEEEEee---cCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeec
Q 028944 64 YRGKVLLVVNVA---SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (201)
Q Consensus 64 ~~gk~~lv~f~~---~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (201)
+++...++.|.+ +||++|+...|.+.++.+++.. +.+..+.+|. + +..+.. ++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~------~---~~~~l~-~~------------ 72 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT------P---EDKEEA-EK------------ 72 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC------c---ccHHHH-HH------------
Confidence 455566777877 9999999999999999999853 5544454441 1 111222 11
Q ss_pred cCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEE-EecCCCCCchhhhhcccC
Q 028944 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVV-ERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~g~~~~~~l~~~l~~ 199 (201)
++|..+|+..+++ +|+.+ .++.|..+.+++.+.|+.
T Consensus 73 ----------------------~~V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~ 109 (215)
T TIGR02187 73 ----------------------YGVERVPTTIILE-EGKDGGIRYTGIPAGYEFAALIED 109 (215)
T ss_pred ----------------------cCCCccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHH
Confidence 2555569877765 67776 478887777776665543
No 135
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.53 E-value=1e-06 Score=57.90 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=37.7
Q ss_pred cCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 61 LSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 61 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+.++++.+.+..|+++||++|+...+.+.++..++.+ +.+..+..+
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~ 52 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGA 52 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhH
Confidence 3467788899999999999999999999999988753 777777544
No 136
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.46 E-value=5.3e-07 Score=69.09 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=31.4
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
++.+.++.||++|||+|+...+.++++..++. .+.+.-|..+
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~ 173 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN 173 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC
Confidence 33456666999999999999999988887753 3666666544
No 137
>smart00594 UAS UAS domain.
Probab=98.43 E-value=1.8e-06 Score=60.16 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=58.4
Q ss_pred CCCcEEEEEEeecCCCCcHHhHHHHH---HHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeec
Q 028944 64 YRGKVLLVVNVASKCGLTQSNYKELN---VLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (201)
Q Consensus 64 ~~gk~~lv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (201)
-++|.++|+|++.||+.|...-..+- ++.+.+ ++++.++.++++ +.+. .++. +.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~--------~~eg-~~l~-~~------------ 81 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVD--------TSEG-QRVS-QF------------ 81 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCC--------ChhH-HHHH-Hh------------
Confidence 36799999999999999998765421 122222 234555555443 2221 2222 11
Q ss_pred cCCCCchhhHHHHHhhcCCcccccccccceEEEECCCC-----cEEEecCCCCCchhhhhcc
Q 028944 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEG-----KVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G-----~i~~~~~g~~~~~~l~~~l 197 (201)
+++...|+++++|++| +++.+..|..+++++...|
T Consensus 82 ----------------------~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 82 ----------------------YKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ----------------------cCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 1344449999999998 5788899999998887765
No 138
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.40 E-value=8.7e-08 Score=67.40 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=45.6
Q ss_pred CCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeecc
Q 028944 62 SGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDV 141 (201)
Q Consensus 62 ~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 141 (201)
..+..+..++.|..+|||+|...+|.|.++.+..++-.+.++.. ++-.+.+ ++|- .
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~r-------------d~~~el~-~~~l-t--------- 92 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILR-------------DENKELM-DQYL-T--------- 92 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-H-------------HHHHHHT-TTTT-T---------
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEe-------------cCChhHH-HHHH-h---------
Confidence 34455788999999999999999999999999875433444432 2333333 2100 0
Q ss_pred CCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCC
Q 028944 142 NGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (201)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (201)
++..++|+.+++|.+|+.+.++.+
T Consensus 93 ---------------------~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 93 ---------------------NGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp ----------------------SS--SSEEEEE-TT--EEEEEES
T ss_pred ---------------------CCCeecCEEEEEcCCCCEeEEEcC
Confidence 144555999999999999988654
No 139
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.9e-07 Score=76.08 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=60.5
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC--CeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (201)
...+||.|||+||++|++..|++++..+.+++. .+.+.-|. .+.+ .... .+|+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVD---------at~~--~~~~-~~y~------------- 96 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVD---------ATEE--SDLA-SKYE------------- 96 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEee---------cchh--hhhH-hhhc-------------
Confidence 368899999999999999999999999999987 45555553 2222 4444 2223
Q ss_pred CCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccC
Q 028944 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 199 (201)
|...|++- |-+||+....|.|....+.+..++++
T Consensus 97 ---------------------v~gyPTlk-iFrnG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 97 ---------------------VRGYPTLK-IFRNGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred ---------------------CCCCCeEE-EEecCCcceeccCcccHHHHHHHHHh
Confidence 33336643 44788876678888877777666643
No 140
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.35 E-value=4.6e-06 Score=51.55 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=31.1
Q ss_pred EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
-+..|+++|||+|+...+.++++.+.+. ++.+..+..+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 4788999999999999999999976643 4787777655
No 141
>PHA02125 thioredoxin-like protein
Probab=98.31 E-value=3.6e-06 Score=53.44 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=19.7
Q ss_pred EEEEeecCCCCcHHhHHHHHHH
Q 028944 70 LVVNVASKCGLTQSNYKELNVL 91 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~ 91 (201)
++.|+++||++|+...|.|.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 7899999999999999988754
No 142
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.27 E-value=1.8e-06 Score=58.30 Aligned_cols=49 Identities=35% Similarity=0.403 Sum_probs=41.1
Q ss_pred eecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 59 VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 59 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
......+++++++.||++|||+|+...|.+.++.+++.. .+.++.+...
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 344444588999999999999999999999999999986 5888888763
No 143
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.25 E-value=5.7e-06 Score=49.42 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=32.0
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
|+.||++||++|....+.+.++ +..+.++.++.++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~ 37 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVD 37 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcC
Confidence 5789999999999999999998 455567999999877
No 144
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.7e-06 Score=70.91 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=36.8
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC-CeEEEEee
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAFP 106 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~vs 106 (201)
.+|-+||.|+++||+||++..|.+++|.+.|++. ++.|.-+.
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmD 425 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMD 425 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEec
Confidence 5689999999999999999999999999999986 56666554
No 145
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.2e-06 Score=58.25 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=85.5
Q ss_pred CCCcccceEEecCCCC-------eeecCCC-CCc-EEEEEEeecCCCCcHH-hHHHHHHHHHHhcCCCeE-EEEeecCCC
Q 028944 42 APKSIYDFTVKDIRGN-------DVSLSGY-RGK-VLLVVNVASKCGLTQS-NYKELNVLYEKYKNQDFE-VLAFPCNQF 110 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~-------~~~l~~~-~gk-~~lv~f~~~~C~~C~~-~~~~l~~~~~~~~~~~~~-vv~vs~d~~ 110 (201)
.|+++|..+++..-+. .++..++ +|| ++|+......-|+|.. ++|...++.+++.++|+. |+.||++
T Consensus 5 vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN-- 82 (165)
T COG0678 5 VGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN-- 82 (165)
T ss_pred cCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC--
Confidence 7889999888775332 3455554 675 6666666778899986 999999999999999874 7888877
Q ss_pred CCCCCCCHHHHHHHHHhhcCcc--cceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecC
Q 028944 111 AGQEPGSNEEIQEVACTMFKAE--FPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYA 185 (201)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~ 185 (201)
+.-.+.+|.+.. +.. ..++ .|.+++-++.. +.+. ..+..|.++.+..+..|+ .||++...+.
T Consensus 83 ------D~FVm~AWak~~-g~~~~I~fi--~Dg~geFTk~~-Gm~~--d~~~~g~G~RS~RYsmvV-~nGvV~~~~i 146 (165)
T COG0678 83 ------DAFVMNAWAKSQ-GGEGNIKFI--PDGNGEFTKAM-GMLV--DKSDLGFGVRSWRYSMVV-ENGVVEKLFI 146 (165)
T ss_pred ------cHHHHHHHHHhc-CCCccEEEe--cCCCchhhhhc-Ccee--ecccCCcceeeeeEEEEE-eCCeEEEEEe
Confidence 789999999764 555 3333 44444433322 1111 112233456666666666 5898876643
No 146
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.10 E-value=1.1e-05 Score=68.95 Aligned_cols=93 Identities=13% Similarity=-0.009 Sum_probs=67.7
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHH-HHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELN-VLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~-~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (201)
++|+++++|+|.||-.|+..-+..- +...+.+-.|+..+-++.. .+..+..+.+++.
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT-------~~~p~~~~lLk~~--------------- 530 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVT-------ANDPAITALLKRL--------------- 530 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeec-------CCCHHHHHHHHHc---------------
Confidence 4569999999999999998777443 5666666667888777655 2445566666331
Q ss_pred CCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccC
Q 028944 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 199 (201)
++-..|++++++++|+-.....|-++.+.+.+.+++
T Consensus 531 --------------------~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~ 566 (569)
T COG4232 531 --------------------GVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLER 566 (569)
T ss_pred --------------------CCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHH
Confidence 233339999999999777677888888888887765
No 147
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.07 E-value=3.3e-05 Score=48.09 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=24.7
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+..|+++|||+|+...+.|.+ .++.+..++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~ 33 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE 33 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc
Confidence 467889999999998777754 35777777765
No 148
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=98.06 E-value=0.00016 Score=51.89 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=86.0
Q ss_pred CCCcccceEEecC-----C-----CCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHH-hcCCCeEEEEee-cCC
Q 028944 42 APKSIYDFTVKDI-----R-----GNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEK-YKNQDFEVLAFP-CNQ 109 (201)
Q Consensus 42 ~~~~~p~f~l~~~-----~-----G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~~~~~vv~vs-~d~ 109 (201)
.|+++|++++.|. + .+.++..++.||+.||.+.|-.-..-..-.|.+.++.+. ++...++..+|- .|+
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dD 82 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDD 82 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEeccc
Confidence 5677787776662 3 345667778899999999876554444555566666555 555557766654 221
Q ss_pred CCCCCCCCHHHHHHHHHhhcCcccc---eeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCC
Q 028944 110 FAGQEPGSNEEIQEVACTMFKAEFP---IFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (201)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (201)
. -..+-.=++..+++. .-.|| ++ .|.+|... ..+.+-. ..-.++++|++|+|++...|
T Consensus 83 A---i~gt~~fVrss~e~~-kk~~p~s~~v--lD~~G~~~-~aW~L~~------------~~SaiiVlDK~G~V~F~k~G 143 (160)
T PF09695_consen 83 A---IWGTGGFVRSSAEDS-KKEFPWSQFV--LDSNGVVR-KAWQLQE------------ESSAIIVLDKQGKVQFVKEG 143 (160)
T ss_pred c---cccchHHHHHHHHHh-hhhCCCcEEE--EcCCCcee-ccccCCC------------CCceEEEEcCCccEEEEECC
Confidence 1 012444566666443 33344 34 66777543 3333211 11457899999999999999
Q ss_pred CCCchhhhhccc
Q 028944 187 TTSPLKIEVGTT 198 (201)
Q Consensus 187 ~~~~~~l~~~l~ 198 (201)
.++++++.+.++
T Consensus 144 ~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 144 ALSPAEVQQVIA 155 (160)
T ss_pred CCCHHHHHHHHH
Confidence 999988777654
No 149
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.04 E-value=1.7e-05 Score=51.21 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHH---HHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~vv~vs~d 108 (201)
+||+++|+|++.||+.|+..-..+ .++.+.+. +++..+-|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcC
Confidence 579999999999999999887766 23333343 34777777654
No 150
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=98.03 E-value=5.9e-05 Score=57.44 Aligned_cols=118 Identities=14% Similarity=0.252 Sum_probs=77.8
Q ss_pred CcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCC---eEEEEeecCCCCCCCCCCHHH
Q 028944 44 KSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQD---FEVLAFPCNQFAGQEPGSNEE 120 (201)
Q Consensus 44 ~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~---~~vv~vs~d~~~~~~~~~~~~ 120 (201)
...|.+++.+.+ .+.+..|+++||-+--.+|..|...+..|..+..++.++| |.++.|+-- +....
T Consensus 8 ~~~p~W~i~~~~----pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~-------~~~s~ 76 (238)
T PF04592_consen 8 KPPPPWKIGGQD----PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ-------GEHSR 76 (238)
T ss_pred CCCCCceECCch----HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC-------Ccchh
Confidence 456777765543 3677789999999999999999999999999999998775 667777632 22233
Q ss_pred HH-HHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCC
Q 028944 121 IQ-EVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPT 187 (201)
Q Consensus 121 ~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~ 187 (201)
++ ..++.+....+|++. .+. .....|..+..... -++|+|+=|++.+...-+
T Consensus 77 ~~~~~l~~r~~~~ipVyq-q~~---~q~dvW~~L~G~kd-----------D~~iyDRCGrL~~~i~~P 129 (238)
T PF04592_consen 77 LKYWELKRRVSEHIPVYQ-QDE---NQPDVWELLNGSKD-----------DFLIYDRCGRLTYHIPLP 129 (238)
T ss_pred HHHHHHHHhCCCCCceec-CCc---cccCHHHHhCCCcC-----------cEEEEeccCcEEEEecCc
Confidence 33 344343344588773 121 22334444433221 348999999999775443
No 151
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.90 E-value=0.0001 Score=52.83 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=32.9
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
.++++|+.|+..+||+|+...+.+.++..++++-.+.+..+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 368999999999999999999999998888754234444443
No 152
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=6.6e-05 Score=62.52 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=35.8
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeec
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~ 107 (201)
.+++.+|.|+++||++|.+..|...++...+.+. +.+..|..
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~ 87 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDC 87 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCc
Confidence 4579999999999999999999999999999873 66666643
No 153
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00021 Score=51.04 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=60.1
Q ss_pred CCCcEEEEEEeecCCCCcHHhHHHH---HHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeec
Q 028944 64 YRGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (201)
Q Consensus 64 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (201)
-.||+.++.|-+..|+.|-..-..+ .++++-+.. .+.++-+.+.. + . |+.. .+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~-------s------------k---pv~f-~~ 95 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISY-------S------------K---PVLF-KV 95 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEecc-------C------------c---ceEe-ec
Confidence 3679999999999999998554332 233333332 24444444320 0 0 1110 00
Q ss_pred cCC---CCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 141 VNG---KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 141 ~~~---~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
..- ...+.+++- ++++++|+.++.|++|+.+....|.+++++....+
T Consensus 96 g~kee~~s~~ELa~k----------f~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vl 145 (182)
T COG2143 96 GDKEEKMSTEELAQK----------FAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVL 145 (182)
T ss_pred CceeeeecHHHHHHH----------hccccCceEEEEcCCCCEEEecCCCCCHHHHHHHH
Confidence 000 011122221 37888899999999999999999999998765543
No 154
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.76 E-value=0.00014 Score=57.11 Aligned_cols=125 Identities=9% Similarity=0.094 Sum_probs=63.7
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhh--------cCcccceee
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTM--------FKAEFPIFD 137 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 137 (201)
++.+|+.|.-..||+|++..+.+.++.+.- ++++..+-... . .+++......-+... +...+...
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g---~V~v~~ip~~~-l--~~~S~~~a~ailca~d~~~a~~~~~~~~~~~- 189 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSG---KVQLRHILVGI-I--KPDSPGKAAAILAAKDPAKALQEYEASGGKL- 189 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcC---ceEEEEEeccc-c--CcchHHHHHHHHhccCHHHHHHHHHHhhhcc-
Confidence 478899999999999999999988876541 24443332211 1 123333333322111 00001000
Q ss_pred eeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 138 KIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
...............+.....-....+++.+|++++.|.+|++. ...|..+++++.+.|.
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~-~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ-QVVGLPDPAQLAEIMG 249 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE-EecCCCCHHHHHHHhC
Confidence 00000000111111111000000012788889999999999764 4477778888887765
No 155
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.72 E-value=0.00044 Score=52.06 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=64.9
Q ss_pred cccceEEecCCCCeeecCCC-CCcEEEE--EEe-----ecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCC
Q 028944 45 SIYDFTVKDIRGNDVSLSGY-RGKVLLV--VNV-----ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPG 116 (201)
Q Consensus 45 ~~p~f~l~~~~G~~~~l~~~-~gk~~lv--~f~-----~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~ 116 (201)
.-.+..+...+|. ++|.++ .|+-.|| .|. ..-||.|...+..++.....+..+++.++.|| +.
T Consensus 45 v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vS--------ra 115 (211)
T PF05988_consen 45 VDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVS--------RA 115 (211)
T ss_pred CCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEe--------CC
Confidence 3345777788885 888885 7764333 332 35699999999999888888888899999999 45
Q ss_pred CHHHHHHHHHhhcCcccceee
Q 028944 117 SNEEIQEVACTMFKAEFPIFD 137 (201)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ 137 (201)
..+++..|.+. .|..+|.+.
T Consensus 116 P~~~i~afk~r-mGW~~pw~S 135 (211)
T PF05988_consen 116 PLEKIEAFKRR-MGWTFPWYS 135 (211)
T ss_pred CHHHHHHHHHh-cCCCceEEE
Confidence 89999999954 699999873
No 156
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=3.2e-05 Score=65.68 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=35.1
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC--CeEEEEeecC
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCN 108 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d 108 (201)
+..+|.|+++||++|+...|.+.++.++...- -+.|-+|...
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA 101 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA 101 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc
Confidence 58899999999999999999999999988755 2666677654
No 157
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.59 E-value=8.6e-05 Score=58.57 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=28.8
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ 98 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~ 98 (201)
...++|+|+|.||+..+...|.+.+..+.++++
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e 45 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE 45 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh
Confidence 479999999999999999999999987777643
No 158
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0006 Score=48.68 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=61.2
Q ss_pred CCCcccc--eE-EecCC----CCeeecCCC-CCc-EEEEEEeecCCCC-cHHhHHHHHHHHHHhcCCCeE-EEEeecCCC
Q 028944 42 APKSIYD--FT-VKDIR----GNDVSLSGY-RGK-VLLVVNVASKCGL-TQSNYKELNVLYEKYKNQDFE-VLAFPCNQF 110 (201)
Q Consensus 42 ~~~~~p~--f~-l~~~~----G~~~~l~~~-~gk-~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~~~-vv~vs~d~~ 110 (201)
.|+.+|+ .+ +.+.. +.+++++++ +|| ++++-.....-|. |+.++|.+.+-.++++.+|+. |+.||+|
T Consensus 11 vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn-- 88 (171)
T KOG0541|consen 11 VGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN-- 88 (171)
T ss_pred ccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC--
Confidence 7889998 44 22221 227788886 774 5555555667788 789999999999999999975 8888887
Q ss_pred CCCCCCCHHHHHHHHHhhcCcc
Q 028944 111 AGQEPGSNEEIQEVACTMFKAE 132 (201)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ 132 (201)
++-.+++|.+. ++.+
T Consensus 89 ------DpFv~~aW~k~-~g~~ 103 (171)
T KOG0541|consen 89 ------DPFVMKAWAKS-LGAN 103 (171)
T ss_pred ------cHHHHHHHHhh-cCcc
Confidence 78999999955 4664
No 159
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.57 E-value=0.00021 Score=45.87 Aligned_cols=49 Identities=24% Similarity=0.264 Sum_probs=34.6
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhh
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTM 128 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 128 (201)
|+.|+++|||+|++..+.|.++. ... .+.++-|+.+ .+.+++++++.+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~-------~~~~~~~~~l~~~ 49 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL-------SNGSEIQDYLEEI 49 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC-------CChHHHHHHHHHH
Confidence 46788999999999999999875 222 3778887654 2445566655443
No 160
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.47 E-value=0.00044 Score=47.58 Aligned_cols=42 Identities=17% Similarity=0.031 Sum_probs=26.6
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC--CeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d 108 (201)
+.+.+||.|+++| |.|.+ .|+..++.+++... .+.+.-|..+
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~ 60 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIK 60 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecc
Confidence 4578999999944 33443 36666666666432 3667777664
No 161
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.42 E-value=0.0007 Score=46.75 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=31.9
Q ss_pred CCcEEEEEEee-------cCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVA-------SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
.+++++|.|.+ +|||+|+...|.+++.....++ +..+|-|.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG 67 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG 67 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 45777777775 4999999999999999888544 5788777654
No 162
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.35 E-value=0.00088 Score=46.18 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=28.3
Q ss_pred cccccceEEEE---CCCCcEEEecCCCCCchhhhhcccC
Q 028944 164 AIKWNFTKFLV---NKEGKVVERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 164 ~i~~~P~~~li---d~~G~i~~~~~g~~~~~~l~~~l~~ 199 (201)
++...|++.++ +.+.+++.+..|..+++++...|+.
T Consensus 73 ~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~ 111 (116)
T cd02991 73 RERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTF 111 (116)
T ss_pred CCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHH
Confidence 34444899999 6677889999999999998877654
No 163
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.29 E-value=0.0044 Score=48.56 Aligned_cols=132 Identities=17% Similarity=0.225 Sum_probs=76.8
Q ss_pred CCCcccceEEecCCCCeeecCC-CCCcEEEEEEeec-CCCCcHHhHHHHHHHHHHhcC-C--CeEEEEeecCCCCCCCCC
Q 028944 42 APKSIYDFTVKDIRGNDVSLSG-YRGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYKN-Q--DFEVLAFPCNQFAGQEPG 116 (201)
Q Consensus 42 ~~~~~p~f~l~~~~G~~~~l~~-~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~-~--~~~vv~vs~d~~~~~~~~ 116 (201)
.....|++..++.+|+.+++.+ ++||++||..+++ |-..|....-. ...++|.. . .++++-|++-
T Consensus 97 kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~-------- 166 (252)
T PF05176_consen 97 KALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLI-------- 166 (252)
T ss_pred hCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecc--------
Confidence 4567899999999999888776 5899888877765 43334333322 23334432 2 6999999864
Q ss_pred CHHHHHHHHHhhc------------CcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEec
Q 028944 117 SNEEIQEVACTMF------------KAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (201)
Q Consensus 117 ~~~~~~~~~~~~~------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (201)
..-++.++..-+ +..|-+. + .+.....+-..+ +. .-..+.++||||++|+|+...
T Consensus 167 -e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~---~-~~~~~~~iRe~L-----gi---~N~~~GYvyLVD~~grIRWag 233 (252)
T PF05176_consen 167 -ENWLKSWLVKLFMGSLRKSIPEERHDRYFIV---Y-RGQLSDDIREAL-----GI---NNSYVGYVYLVDPNGRIRWAG 233 (252)
T ss_pred -hHHHHHHHHHHHhhhhhccCCHHHCceEEEE---e-CCcccHHHHHHh-----CC---CCCCcCeEEEECCCCeEEeCc
Confidence 334445543211 1112111 1 110111111111 11 122337889999999999999
Q ss_pred CCCCCchhhhhc
Q 028944 185 APTTSPLKIEVG 196 (201)
Q Consensus 185 ~g~~~~~~l~~~ 196 (201)
.|..+++++...
T Consensus 234 sG~At~~E~~~L 245 (252)
T PF05176_consen 234 SGPATPEELESL 245 (252)
T ss_pred cCCCCHHHHHHH
Confidence 999988876543
No 164
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=97.27 E-value=0.0054 Score=42.42 Aligned_cols=105 Identities=23% Similarity=0.227 Sum_probs=66.5
Q ss_pred cCCCCCcEEEEEEeecC--CCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCC-CCCHHHHHHHHHhhcCcccceee
Q 028944 61 LSGYRGKVLLVVNVASK--CGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQE-PGSNEEIQEVACTMFKAEFPIFD 137 (201)
Q Consensus 61 l~~~~gk~~lv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 137 (201)
+++++++-.++..+++. -+.=..++..|.+-...+.++++.++.+.-+.+..+. .-+........ +.|+++
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~----- 76 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIP----- 76 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCC-----
Confidence 56677766555556643 3446788889999888899999999998644321111 01112222222 111211
Q ss_pred eeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccC
Q 028944 138 KIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 199 (201)
....+++||++||.+..++..+.+.+++.+.|..
T Consensus 77 ----------------------------~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 77 ----------------------------PGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred ----------------------------CCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 0003679999999999999999999988877654
No 165
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.20 E-value=0.001 Score=42.21 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=22.9
Q ss_pred eecCCCCcHHhHHHHHHHHHHhcCCCeEEEE
Q 028944 74 VASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104 (201)
Q Consensus 74 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~ 104 (201)
++++||.|+.....++++..++. -.+.++-
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~ 35 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG-IEVEIID 35 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC-CeEEEEE
Confidence 57889999999999999988873 2344444
No 166
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.19 E-value=0.00053 Score=54.20 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=30.5
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEE
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEV 102 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v 102 (201)
...+|.|+++||.+|++.-|...++-.++++.|..|
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~Pi 79 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPI 79 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCce
Confidence 588999999999999999999999887777665433
No 167
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.13 E-value=0.00083 Score=52.09 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=29.1
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEe
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~v 105 (201)
.|+.+++.|....||+|++..+.+.++.+ .|+.|..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYL 142 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEE
Confidence 35889999999999999999999887643 35666554
No 168
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.05 E-value=0.0029 Score=47.72 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=29.6
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
.++..++.|...+||+|++..+.+.+ .-.+-.+.++.+...
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~ 116 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPIL 116 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcC
Confidence 46899999999999999999999877 111223555555443
No 169
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.04 E-value=0.003 Score=39.56 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEEeecCCCCcHHhHHHHHHH
Q 028944 70 LVVNVASKCGLTQSNYKELNVL 91 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~ 91 (201)
+..||++|||+|++..+.|.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 6789999999999988877654
No 170
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=97.04 E-value=0.0061 Score=41.74 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhh-----------
Q 028944 88 LNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE----------- 156 (201)
Q Consensus 88 l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----------- 156 (201)
|.+..+++++.|+.++.|+.. +.+.+++|.+. .+.+++++ .|++ +.+|..+...
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~~~-~~~p~~ly--~D~~----~~lY~~lg~~~~~~~~~~~~~ 66 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFCEL-TGFPFPLY--VDPE----RKLYKALGLKRGLKWSLLPPA 66 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHHhc-cCCCCcEE--EeCc----HHHHHHhCCccccccCCCchH
Confidence 456677777789999999865 77679999954 58899988 4443 2333332211
Q ss_pred ----------------cCCcc-cccccccceEEEECCCCcEEEecCC
Q 028944 157 ----------------KGGFL-GDAIKWNFTKFLVNKEGKVVERYAP 186 (201)
Q Consensus 157 ----------------~~~~~-~~~i~~~P~~~lid~~G~i~~~~~g 186 (201)
..+.. .+++.-.+-.||+|++|++++.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 67 LWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 11112 2345555788999999999987653
No 171
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.002 Score=53.74 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=35.2
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcC-CCeEEEEee
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKN-QDFEVLAFP 106 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~vv~vs 106 (201)
....+|.|+++||++|+...|...++...+.. .++.+..+.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d 203 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKID 203 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeec
Confidence 45789999999999999999999999999874 467777775
No 172
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.0033 Score=47.46 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=61.9
Q ss_pred ceEEecCCCCeeecCCC-CCcEEEEEE-------eecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHH
Q 028944 48 DFTVKDIRGNDVSLSGY-RGKVLLVVN-------VASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (201)
Q Consensus 48 ~f~l~~~~G~~~~l~~~-~gk~~lv~f-------~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 119 (201)
+..+...+| ..+|.++ .|+-.||.+ |...||.|......+.-....+...++.+++|| +...+
T Consensus 54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~Vs--------RAPl~ 124 (247)
T COG4312 54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVS--------RAPLE 124 (247)
T ss_pred eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEe--------cCcHH
Confidence 455566677 7788885 776444432 334699999999999888888888899999999 45889
Q ss_pred HHHHHHHhhcCcccceee
Q 028944 120 EIQEVACTMFKAEFPIFD 137 (201)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~ 137 (201)
++..|- .+.|..||...
T Consensus 125 ~l~~~k-~rmGW~f~w~S 141 (247)
T COG4312 125 ELVAYK-RRMGWQFPWVS 141 (247)
T ss_pred HHHHHH-HhcCCcceeEe
Confidence 999998 45699999874
No 173
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.96 E-value=0.0027 Score=44.67 Aligned_cols=77 Identities=9% Similarity=-0.032 Sum_probs=52.0
Q ss_pred CCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhh
Q 028944 77 KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE 156 (201)
Q Consensus 77 ~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 156 (201)
.+|-+....=.|.++.++|.+..+.+..|.+|. + .+ .. .+
T Consensus 47 r~~E~~D~avvleELa~e~~~~~v~~akVDiD~-------~-~~---LA-~~---------------------------- 86 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ-------S-EA---IG-DR---------------------------- 86 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCCceEEEEEECCC-------C-HH---HH-HH----------------------------
Confidence 455566666677777777754347777776651 1 11 11 11
Q ss_pred cCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhcccCC
Q 028944 157 KGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTIP 200 (201)
Q Consensus 157 ~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 200 (201)
++|..+|+.+++ ++|+++.+..|..+.+++.+.|+++
T Consensus 87 ------fgV~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 87 ------FGVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGL 123 (132)
T ss_pred ------cCCccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHH
Confidence 266666986666 7999999999999998888877654
No 174
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.74 E-value=0.004 Score=40.25 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=29.6
Q ss_pred EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
-+..|..+|||.|++....|+++..++. ++.+.-++++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~ 39 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIH 39 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECC
Confidence 3677889999999999999999987653 4555555554
No 175
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.0044 Score=42.34 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=33.1
Q ss_pred CCcEEEEEEee--------cCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVA--------SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~--------~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+|+-+.+.|.+ +|||+|.+..|.+.+..+..+. ++.+|.|-+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG 74 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVG 74 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEec
Confidence 45556666664 5999999999999999886654 5888888654
No 176
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.59 E-value=0.0066 Score=43.81 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=39.0
Q ss_pred eeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC-CeEEEEeec
Q 028944 58 DVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAFPC 107 (201)
Q Consensus 58 ~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~ 107 (201)
.+.+..-.++++|+.|+...||+|++..+.+.++.+++-+. .+.++...+
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 45566667799999999999999999999999999998322 477777765
No 177
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.57 E-value=0.0023 Score=46.62 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=18.5
Q ss_pred eecCCCCCcEEEEEEeecCCCCcHHhHH
Q 028944 59 VSLSGYRGKVLLVVNVASKCGLTQSNYK 86 (201)
Q Consensus 59 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~ 86 (201)
+..+.-++|+++|.+.++||.-|..+..
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcc
Confidence 3344446899999999999999997764
No 178
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=96.55 E-value=0.016 Score=41.25 Aligned_cols=120 Identities=15% Similarity=0.260 Sum_probs=61.5
Q ss_pred eeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHH-HhcCCCeEEEEe-ecCCCCCCCCCCHHHHHHHHHhhcCcccc-
Q 028944 58 DVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYE-KYKNQDFEVLAF-PCNQFAGQEPGSNEEIQEVACTMFKAEFP- 134 (201)
Q Consensus 58 ~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~-~~~~~~~~vv~v-s~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 134 (201)
.+..+++.||+.|+..-+-....=.+-.+.++.+.. ++....++--.| +.|+-.- .+--=++.-+++ ..-.||
T Consensus 51 ~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQTTTIiN~DDAi~---GtgmFVkssae~-~Kke~pw 126 (184)
T COG3054 51 TWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQTTTIINTDDAIP---GTGMFVKSSAES-NKKEYPW 126 (184)
T ss_pred ccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHceeeEEeccCCccc---cccceeecchhh-ccccCCc
Confidence 455667789999998887654433333334444432 222223443333 3332100 111122333322 233344
Q ss_pred --eeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEecCCCCCchhhhhc
Q 028944 135 --IFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVG 196 (201)
Q Consensus 135 --~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~ 196 (201)
++ .|.+| .++..+.... . ...++++||+|++.....|..+..++.+.
T Consensus 127 Sq~v--lD~~g-vak~AWqL~e--~----------~SaivVlDk~G~VkfvkeGaLt~aevQ~V 175 (184)
T COG3054 127 SQFV--LDSNG-VAKNAWQLKE--E----------SSAVVVLDKDGRVKFVKEGALTQAEVQQV 175 (184)
T ss_pred eeeE--Eccch-hhhhhhcccc--c----------cceEEEEcCCCcEEEEecCCccHHHHHHH
Confidence 33 45555 3332332211 1 14679999999999999999987765543
No 179
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.025 Score=35.32 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=32.8
Q ss_pred EEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHh
Q 028944 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 127 (201)
+.|++..||.|......|+++. -++..|-|+ .+...+++|+.-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt---------~Sm~NlKrFl~l 47 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-----VDYDFVEIT---------ESMANLKRFLHL 47 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-----CCceeeehh---------hhhhhHHHHHhh
Confidence 5688999999999888888873 235566664 478899999853
No 180
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.22 E-value=0.013 Score=37.15 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=25.9
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
++.|..+|||.|....+.|.++.. .+.++-|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~ 35 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQH 35 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCC
Confidence 466778999999999888888643 3667777654
No 181
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.12 E-value=0.034 Score=48.68 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=28.8
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
+..+-.|.+++||.|+.....++++..+.+ ++..-.|.
T Consensus 477 ~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~ 514 (555)
T TIGR03143 477 PVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMID 514 (555)
T ss_pred CeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEE
Confidence 445666789999999999999999988876 35544443
No 182
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.12 E-value=0.028 Score=34.42 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=22.3
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
++.|.++|||+|......|.+ .++.+..+.+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence 467888999999987666654 24555555555
No 183
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.09 E-value=0.046 Score=46.05 Aligned_cols=65 Identities=8% Similarity=0.029 Sum_probs=50.8
Q ss_pred CcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCC
Q 028944 44 KSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 109 (201)
Q Consensus 44 ~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~ 109 (201)
..+..+.+.-.+|+.+++.+++|...||..-.+ -.+|...+...+...+++.++||.||.|..+.
T Consensus 274 e~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~-~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 274 ETLSRLPVRLSTNRIVELVQLRDITRPVILAGT-KESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred hhhccceEeccCCCEEeHHHhcCcceEEEEECC-HHHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 345556666657889999999997766665433 36788889999999999999999999998763
No 184
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.74 E-value=0.017 Score=34.52 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=22.5
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
++.|..++||+|+.....|++ .|+.+-.+.++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TTBEEEEEEGG
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cCCeeeEcccc
Confidence 467888999999988877744 34555555554
No 185
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.66 E-value=0.025 Score=41.47 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=34.0
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
.++++|+.|+...||+|+...+.+.++.++++++ +.+.-+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~-v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD-VKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC-ceEEEcC
Confidence 5789999999999999999999999999998543 5554333
No 186
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.096 Score=38.82 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=45.0
Q ss_pred ecCCCCeeecCCC-CC-cEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 52 KDIRGNDVSLSGY-RG-KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 52 ~~~~G~~~~l~~~-~g-k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
.+..|+.+...++ +. +.+|....-..|-.|+.+...|.++.+-++..|+..+.|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5788999999987 44 4555555568999999999999999777777799999986
No 187
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.57 E-value=0.034 Score=33.82 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.4
Q ss_pred EEEEeecCCCCcHHhHHHHHHH
Q 028944 70 LVVNVASKCGLTQSNYKELNVL 91 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~ 91 (201)
++.|..+|||.|+.....|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~ 23 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4677889999999988888765
No 188
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.45 E-value=0.008 Score=45.94 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=25.5
Q ss_pred EEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEE
Q 028944 68 VLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEV 102 (201)
Q Consensus 68 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v 102 (201)
--++.|+++|||.|+...+++.++..--.+-++.+
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~v 75 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKV 75 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCceeE
Confidence 34678889999999999999988765433334433
No 189
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.36 E-value=0.083 Score=45.88 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=30.6
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEe
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~v 105 (201)
.+...+-.|...+||+|+.....++++....+ ++..-.|
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~i 153 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMI 153 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEE
Confidence 34567888999999999999999999887755 3665555
No 190
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.32 E-value=0.093 Score=32.59 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=22.7
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+..|..++||.|......|++ .|+.+-.+.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~ 33 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD 33 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC
Confidence 467788999999988777765 24555555554
No 191
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.22 E-value=0.14 Score=40.55 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=34.4
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
++.++||.||-+.++.|...-..|..|+.+|.. +.++-|...
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~ 186 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS 186 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence 346899999999999999999999999999986 888888643
No 192
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.16 E-value=0.085 Score=34.10 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=25.8
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
|+.|..+|||+|.+....|.++..++. ++.+.-++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 456778999999999999988765543 3444444443
No 193
>PHA03050 glutaredoxin; Provisional
Probab=95.12 E-value=0.058 Score=36.65 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=24.7
Q ss_pred EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
-|+.|..+|||+|++....|.+..-+. ..+.++-|.
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~--~~~~~i~i~ 49 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKR--GAYEIVDIK 49 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCc--CCcEEEECC
Confidence 466788899999998887777653222 136666664
No 194
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.02 E-value=0.079 Score=33.43 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=17.2
Q ss_pred EEEEeecCCCCcHHhHHHHHH
Q 028944 70 LVVNVASKCGLTQSNYKELNV 90 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~ 90 (201)
+..|+.++||.|......|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~ 21 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS 21 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH
Confidence 356778999999988888875
No 195
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.77 E-value=0.19 Score=34.20 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=44.2
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCC-C--CCCCCHHHHHHHHHhhcCcccceeeeecc
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFA-G--QEPGSNEEIQEVACTMFKAEFPIFDKIDV 141 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 141 (201)
|.+++-|.-+.|+.|...-..|.++.++|.=..+.+++.=..+-- . ..+..-+-+..+. ++++.+|..+-.+|+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSfFsK~g~v~~lg~d~~y~lInn~~-~~lgne~v~lfKydp 78 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSFFSKDGQVKVLGMDKGYTLINNFF-KHLGNEYVSLFKYDP 78 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeeeeccCCceEEEecccceehHHHHH-HhhcccEEEEEEEcC
Confidence 578999999999999999999988888775323344333111000 0 0012334455565 556766666644443
No 196
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.62 E-value=0.21 Score=30.97 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=22.5
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
++.|..++||.|++....|++ .|+.+-.+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 456777999999988888776 34555555544
No 197
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.61 E-value=0.18 Score=43.80 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=30.5
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEe
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~v 105 (201)
.++..+-.|....||+|+.....++++..+.+ ++..-.|
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~i 154 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMI 154 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEE
Confidence 44567888999999999999999999887766 3554444
No 198
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.36 E-value=0.14 Score=32.43 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=25.8
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+.+..|+.|..+|||.|++.-..|.+ .|+.+-.+.++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~ 41 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLG 41 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECC
Confidence 34555778889999999988877764 24555555554
No 199
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.2 Score=31.95 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=29.2
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHh
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 127 (201)
+..|--++||+|.+.-..|.+ +|+...-|.++ .+..++.++++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~g~~~~~i~~~------~~~~~~~~~~~~~ 47 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------KGVDYEEIDVD------DDEPEEAREMVKR 47 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------cCCCcEEEEec------CCcHHHHHHHHHH
Confidence 455667899999988777773 35555555544 2344677777754
No 200
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.039 Score=42.00 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+++..++.||+.||..|...-..+..+.+.. ++++++.+..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~ 57 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE 57 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence 7789999999999999998888888887777 45888887655
No 201
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.17 E-value=0.069 Score=40.59 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=32.0
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHH---HHHHHHhcCCCeEEEEeec
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPC 107 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~vv~vs~ 107 (201)
.|++.|+.|+.-.||+|...-+.+ ..+.+.+.+ ++.++-+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~ 80 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHV 80 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEecc
Confidence 467889999999999999988866 778888765 455554443
No 202
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.06 E-value=0.22 Score=31.85 Aligned_cols=32 Identities=6% Similarity=0.290 Sum_probs=23.1
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+..|..+|||.|......|.+ +|+.+-.+.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECC
Confidence 556778999999987777744 46666666655
No 203
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.2 Score=38.15 Aligned_cols=43 Identities=14% Similarity=-0.045 Sum_probs=36.9
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
.+.-+|.||+.|-|.|+...|.+.++..+|...++.+=.|.+.
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG 186 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG 186 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec
Confidence 3689999999999999999999999999998877766555443
No 204
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.60 E-value=0.26 Score=32.79 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=16.9
Q ss_pred EEEEeecCCCCcHHhHHHHHHH
Q 028944 70 LVVNVASKCGLTQSNYKELNVL 91 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~ 91 (201)
|+.|..+|||.|.+.-..|.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 5667789999999877766554
No 205
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.57 E-value=0.98 Score=31.37 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=43.2
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (201)
..|.+|+-|.-.|-|.|..+=..|.++..+.++ +.+|.+. +..++..|. +.|++..|
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~Iylv----------dideV~~~~-~~~~l~~p 78 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLV----------DIDEVPDFV-KMYELYDP 78 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEE----------ecchhhhhh-hhhcccCC
Confidence 568999999999999999999999999999876 5555543 233666666 44566654
No 206
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.50 E-value=0.23 Score=30.74 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=21.9
Q ss_pred EEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
..|..++||.|+.....|.+ .|+.+-.+.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID 32 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 45677999999988888865 34555555554
No 207
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.41 E-value=0.31 Score=32.32 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=17.9
Q ss_pred CcEEEEEEee----cCCCCcHHhHHHHHHH
Q 028944 66 GKVLLVVNVA----SKCGLTQSNYKELNVL 91 (201)
Q Consensus 66 gk~~lv~f~~----~~C~~C~~~~~~l~~~ 91 (201)
.+.++|+-.. +|||+|.+.-..|.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC 40 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc
Confidence 3455555442 7999999887777664
No 208
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=93.39 E-value=0.17 Score=34.78 Aligned_cols=50 Identities=12% Similarity=0.180 Sum_probs=33.8
Q ss_pred EEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCccc
Q 028944 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEF 133 (201)
Q Consensus 72 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (201)
.|+.++|+.|++....|.+. |+.+..+++. .++.+.+++.++++. .+..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~----~~~~~~~el~~l~~~-~~~~~ 52 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEAN-------GIEYQFIDIG----EDGPTREELLDILSL-LEDGI 52 (117)
T ss_pred EEeCCCCHHHHHHHHHHHHc-------CCceEEEecC----CChhhHHHHHHHHHH-cCCCH
Confidence 56789999999988777762 3444444433 235688999999854 46443
No 209
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.17 E-value=0.15 Score=32.74 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=28.5
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+..|+...||+|....+.+.++.....+ ++.+.-+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 4678899999999999999999855544 4666555443
No 210
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.00 E-value=0.34 Score=31.55 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=17.8
Q ss_pred CCcEEEEEEee----cCCCCcHHhHHHHHHH
Q 028944 65 RGKVLLVVNVA----SKCGLTQSNYKELNVL 91 (201)
Q Consensus 65 ~gk~~lv~f~~----~~C~~C~~~~~~l~~~ 91 (201)
++++++|+--+ +|||.|.+....|.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence 34455555432 5999999877777664
No 211
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=92.81 E-value=0.87 Score=30.70 Aligned_cols=41 Identities=15% Similarity=0.420 Sum_probs=27.5
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
..++++|+=-+|.||.....+..+++..+...++ +.+..+.
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~ 58 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLD 58 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEE
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEE
Confidence 3578888888999999999999999999888764 4444443
No 212
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=0.37 Score=37.38 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=41.2
Q ss_pred ecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 52 KDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 52 ~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
...++......+..++++++.|....||+|++.++.+.+.+....+..+.+.-+.
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~~ 124 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREFP 124 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEee
Confidence 3445656666666668999999999999999999999998777766544444333
No 213
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.25 E-value=0.39 Score=32.17 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=33.4
Q ss_pred EEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcC
Q 028944 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFK 130 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~ 130 (201)
..|..++|+.|++....|++. +-.+..+-|.-+ +.+.++++++... .+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~------~~~~~~l~~~~~~-~~ 49 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKE------PPTKEELKELLAK-LG 49 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccC------CCCHHHHHHHHHh-cC
Confidence 467789999999887777663 223555555533 5688999999844 35
No 214
>PRK10824 glutaredoxin-4; Provisional
Probab=92.23 E-value=0.37 Score=33.11 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=18.4
Q ss_pred CcEEEEEEee----cCCCCcHHhHHHHHHH
Q 028944 66 GKVLLVVNVA----SKCGLTQSNYKELNVL 91 (201)
Q Consensus 66 gk~~lv~f~~----~~C~~C~~~~~~l~~~ 91 (201)
.+.+||+--. +|||+|.+....|.+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 3455555544 5999999888877775
No 215
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=92.05 E-value=0.4 Score=32.30 Aligned_cols=48 Identities=6% Similarity=0.062 Sum_probs=34.7
Q ss_pred EEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcC
Q 028944 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFK 130 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~ 130 (201)
..|..++|+.|++....|.+. +-.+.++-+.-+ +-+.+++++++++ .|
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~------p~s~~eL~~~l~~-~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD------GLDAATLERWLAK-VG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC------CCCHHHHHHHHHH-hC
Confidence 467789999999987777664 223566666544 5699999999954 46
No 216
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.04 E-value=0.57 Score=28.84 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=16.7
Q ss_pred EEEEeecCCCCcHHhHHHHHH
Q 028944 70 LVVNVASKCGLTQSNYKELNV 90 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~ 90 (201)
++.|..+|||.|.+....|++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~ 23 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 566778999999988777764
No 217
>PRK10638 glutaredoxin 3; Provisional
Probab=91.97 E-value=0.67 Score=29.49 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=17.3
Q ss_pred EEEEeecCCCCcHHhHHHHHHH
Q 028944 70 LVVNVASKCGLTQSNYKELNVL 91 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~ 91 (201)
+..|..+|||.|++....|++.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~ 25 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK 25 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 4566679999999888877763
No 218
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=91.73 E-value=0.37 Score=32.75 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=33.1
Q ss_pred EEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCc
Q 028944 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKA 131 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 131 (201)
..|..++|+.|++....|++. +-.+.++-+.-+ +.+.+++++++.. .+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~------~~~~~el~~~~~~-~~~ 50 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEE------PPSKEELKKWLEK-SGL 50 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCC------cccHHHHHHHHHH-cCC
Confidence 356779999999888777763 223455555433 5688999998853 454
No 219
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=91.58 E-value=0.62 Score=32.66 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=54.6
Q ss_pred EEEEEEeec--CCCC-cH-HhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCC
Q 028944 68 VLLVVNVAS--KCGL-TQ-SNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (201)
Q Consensus 68 ~~lv~f~~~--~C~~-C~-~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (201)
.=+|.|..+ .|.. +. .....+.++.++++++.+.++.+..++ ... +. +.+|+. +
T Consensus 22 ~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--------~~~---~~-~~fgl~----------~ 79 (130)
T cd02983 22 LCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--------QLD---LE-EALNIG----------G 79 (130)
T ss_pred eEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--------cHH---HH-HHcCCC----------c
Confidence 445555432 4655 65 446789999999998878888887652 122 22 333322 0
Q ss_pred CCchhhHHHHHhhcCCcccccccccceEEEECCCCcEEEe-cCCCCCchhhhhcccC
Q 028944 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVER-YAPTTSPLKIEVGTTI 199 (201)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~-~~g~~~~~~l~~~l~~ 199 (201)
. ..|.+++++.++. .+. +.|..+.+.+.+.++.
T Consensus 80 ~----------------------~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~ 113 (130)
T cd02983 80 F----------------------GYPAMVAINFRKM-KFATLKGSFSEDGINEFLRE 113 (130)
T ss_pred c----------------------CCCEEEEEecccC-ccccccCccCHHHHHHHHHH
Confidence 0 1188888888765 444 7788888888777654
No 220
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=91.43 E-value=0.61 Score=31.88 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=33.2
Q ss_pred EEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcc
Q 028944 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAE 132 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 132 (201)
..|+.++|+.|++....|.+. +-.++++-+.-+ +-+.++++++++. .+..
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~------~~~~~el~~~~~~-~~~~ 52 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ------PLTKEELKEILSL-TENG 52 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC------cchHHHHHHHHHH-hcCC
Confidence 456779999999887777663 222444444333 5688999999953 4444
No 221
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=90.78 E-value=0.57 Score=32.91 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=33.2
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcc
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAE 132 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 132 (201)
+..|..++|+.|++....|.+. +-.+.++-|.-+ +.+.+++.++++. .+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~------~~~~~eL~~~l~~-~~~g 52 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSS------PLTIDEIKQILRM-TEDG 52 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCC------hhhHHHHHHHHHH-hcCC
Confidence 4466789999999877666553 112444554433 5688999999954 4433
No 222
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=90.22 E-value=1.2 Score=34.86 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=28.8
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKN 97 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~ 97 (201)
.||+.+++..+-|||.|-.+-=.|-.....|++
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 589999999999999999888777777778875
No 223
>PRK12559 transcriptional regulator Spx; Provisional
Probab=89.96 E-value=1.1 Score=31.48 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=32.9
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHh
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 127 (201)
+..|..++|+.|++....|.+. +-.+.++-+.-+ +-+.++++++++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~~------~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVSN------SMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeCC------cCCHHHHHHHHHH
Confidence 4567789999999977666553 223555555544 5699999999954
No 224
>PRK10026 arsenate reductase; Provisional
Probab=89.03 E-value=6.3 Score=28.11 Aligned_cols=50 Identities=8% Similarity=0.294 Sum_probs=35.9
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCc
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKA 131 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 131 (201)
+..|+.+.|..|++...-|++. +-.+.++-+--+ +-+.++++.+++. .+.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~------ppt~~eL~~~l~~-~g~ 53 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLET------PPTRDELVKLIAD-MGI 53 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCC------CcCHHHHHHHHHh-CCC
Confidence 4467789999999988887764 223566666544 4589999999954 464
No 225
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=88.82 E-value=1.7 Score=31.76 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=19.6
Q ss_pred ceEEEECCC-CcEEEecCCCCCchhhhhccc
Q 028944 169 FTKFLVNKE-GKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 169 P~~~lid~~-G~i~~~~~g~~~~~~l~~~l~ 198 (201)
|.+++++.+ ++......+..+.+.+.+.++
T Consensus 153 P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 153 PALVIFDSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp SEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred CEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 999999954 444333577777777777654
No 226
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=87.93 E-value=1.8 Score=34.28 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=46.6
Q ss_pred CCcccceEEecCCCCeeecCCCCC-cEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHH
Q 028944 43 PKSIYDFTVKDIRGNDVSLSGYRG-KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (201)
Q Consensus 43 ~~~~p~f~l~~~~G~~~~l~~~~g-k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 121 (201)
=+.+|-|++.|.+|..+-...-.| +.+-++++-. .+..+.+..+++-.++.+ .+++|+.|+.+ ++
T Consensus 79 L~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~q--edA~afL~~lk~~~p~l~-~~~kV~pvsL~-----------~v 144 (270)
T TIGR00995 79 LAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQ--EDAEAFLAQLRKRKPEVG-SQAKVVPITLD-----------QV 144 (270)
T ss_pred hcCCceEEEEcCCCCeEEEECCCCCceEEEEECCH--HHHHHHHHHHHhhCcccc-CCceEEEEEHH-----------HH
Confidence 457899999999999886665444 5555544311 123334444444344443 36999999876 44
Q ss_pred HHHHHhhcCccccee
Q 028944 122 QEVACTMFKAEFPIF 136 (201)
Q Consensus 122 ~~~~~~~~~~~~~~~ 136 (201)
-+.. .. ++.|.++
T Consensus 145 Ykl~-~e-~l~F~fi 157 (270)
T TIGR00995 145 YKLK-VE-GIGFRFL 157 (270)
T ss_pred HHHh-hc-CccEEEe
Confidence 4444 32 6667666
No 227
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=87.86 E-value=1.5 Score=36.77 Aligned_cols=37 Identities=8% Similarity=-0.021 Sum_probs=31.4
Q ss_pred ccccccceEEEECCCCcEEEecCCCCCchhhhhcccC
Q 028944 163 DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTTI 199 (201)
Q Consensus 163 ~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 199 (201)
|.+..+|..|+|+.+|+-+....|....++|...|++
T Consensus 73 Yp~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 73 YPYVSVPSIFFIGFSGTPLEVITGFVTADELASSIEK 109 (506)
T ss_pred cccccccceeeecCCCceeEEeeccccHHHHHHHHHH
Confidence 4677789999999999999999999988877766654
No 228
>PRK13617 psbV cytochrome c-550; Provisional
Probab=87.34 E-value=0.5 Score=34.62 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=34.6
Q ss_pred ecCCCCeeecCC--C-CCcEEEEEEeecCCCCcH---------HhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHH
Q 028944 52 KDIRGNDVSLSG--Y-RGKVLLVVNVASKCGLTQ---------SNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (201)
Q Consensus 52 ~~~~G~~~~l~~--~-~gk~~lv~f~~~~C~~C~---------~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 119 (201)
.|.+|+++++.. + +|+-+ | ...|..|. ..-+.++.+.... |.+++.+
T Consensus 45 ~~~~g~~~~~s~~~~~~G~~~---F-~~~C~~CH~~g~T~~n~~vg~dL~~L~aa~-----------------p~r~nv~ 103 (170)
T PRK13617 45 ADPSGSQVTFSESEIKAGRKV---F-NTSCGTCHAGGITKTNQNVGLDPETLALAT-----------------PARDNVD 103 (170)
T ss_pred cCCCCCeEEeCHHHHHHHHHH---H-HcchhhhccCCCcCCCCCcCCCHHHHhccC-----------------CCCCCHH
Confidence 466888877655 3 45544 3 88999998 3334443332111 3357899
Q ss_pred HHHHHHHh
Q 028944 120 EIQEVACT 127 (201)
Q Consensus 120 ~~~~~~~~ 127 (201)
.+.+|++.
T Consensus 104 aLv~yikd 111 (170)
T PRK13617 104 ALVDYLKD 111 (170)
T ss_pred HHHHHHhC
Confidence 99999964
No 229
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=87.33 E-value=5.8 Score=26.91 Aligned_cols=31 Identities=6% Similarity=-0.272 Sum_probs=21.4
Q ss_pred ceEEEECCCCcEEEecCCCC-CchhhhhcccCC
Q 028944 169 FTKFLVNKEGKVVERYAPTT-SPLKIEVGTTIP 200 (201)
Q Consensus 169 P~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~l 200 (201)
|.+.+++.++ ..+...+.. +.+.+++.++..
T Consensus 79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 8888888766 333355666 778888877654
No 230
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=86.93 E-value=3.6 Score=31.22 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=25.9
Q ss_pred EEEEe-ecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 70 LVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 70 lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
||..| +-.|..|+.--..|.++.++ .++..++..+|
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVD 37 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVD 37 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-S
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCC
Confidence 34444 45899999999999999888 36999999877
No 231
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=86.52 E-value=2.1 Score=30.07 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=33.6
Q ss_pred EEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCccc
Q 028944 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEF 133 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (201)
..|..++|+.|++...-|.+- +-.+.++-+.-+ +-+.++++++++. .+..+
T Consensus 3 ~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~~------~~s~~eL~~~l~~-~~~~~ 53 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGKE------PLTKEEILAILTK-TENGI 53 (132)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCCC------CCCHHHHHHHHHH-hCCCH
Confidence 456679999999876555542 223555555544 5689999999954 45443
No 232
>PTZ00062 glutaredoxin; Provisional
Probab=86.48 E-value=1.9 Score=32.83 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=16.8
Q ss_pred CcEEEEEEee----cCCCCcHHhHHHHHHH
Q 028944 66 GKVLLVVNVA----SKCGLTQSNYKELNVL 91 (201)
Q Consensus 66 gk~~lv~f~~----~~C~~C~~~~~~l~~~ 91 (201)
.++++|+--+ ++||.|++....|++.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~ 141 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS 141 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc
Confidence 3555555543 5888888777666653
No 233
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=86.08 E-value=7.2 Score=27.67 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=32.0
Q ss_pred EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCccc
Q 028944 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEF 133 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (201)
-++.|.++.|+=|..-+..|+ .+|+.|=.+..| +.+.+++- +++++
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~--------d~~alK~~----~gIp~ 72 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETD--------DFLALKRR----LGIPY 72 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecC--------cHHHHHHh----cCCCh
Confidence 356778899999997776665 357888887755 55555443 56665
No 234
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=84.76 E-value=4.4 Score=27.28 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=25.1
Q ss_pred EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHH
Q 028944 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVAC 126 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~ 126 (201)
-+|.|--+|||.|...-..| .++.. ...++-+.-+ ..-.++++++.
T Consensus 15 ~VVifSKs~C~~c~~~k~ll----~~~~v-~~~vvELD~~-------~~g~eiq~~l~ 60 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELL----SDLGV-NPKVVELDED-------EDGSEIQKALK 60 (104)
T ss_pred CEEEEECCcCchHHHHHHHH----HhCCC-CCEEEEccCC-------CCcHHHHHHHH
Confidence 35556679999999833233 33322 2445544322 23347777764
No 235
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=82.61 E-value=3.6 Score=28.28 Aligned_cols=52 Identities=12% Similarity=0.245 Sum_probs=36.3
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCccc
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEF 133 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (201)
+-.|+.+.|..|++...-|++.. -.++++-+.-+ +-+.++++++++. .+..+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g-----i~~~~~~y~~~------~~s~~eL~~~l~~-~g~~~ 54 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG-----IEYTFIDYLKT------PPSREELKKILSK-LGDGV 54 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC-----CCcEEEEeecC------CCCHHHHHHHHHH-cCccH
Confidence 45677899999998887776642 22556666544 4589999999954 46443
No 236
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=82.43 E-value=5.5 Score=30.01 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=40.7
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCccccee
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIF 136 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (201)
.-.+..|.-..|+.|...+..+.. .+..+.|..|... .+.+.++.|+.. ++++-..+
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~-------~dD~~Ir~WA~~-~~Idp~~V 165 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQ-------GDDERIRQWANR-HQIDPAKV 165 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCC-------CCHHHHHHHHHH-cCCCHHHe
Confidence 456666777999999988888744 3445777777543 588999999965 48875433
No 237
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=80.35 E-value=5.5 Score=27.14 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=34.3
Q ss_pred EEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCc
Q 028944 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKA 131 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 131 (201)
..|..+.|+.|++...-|.+. +..+.++-+.-+ +-+.+++++++++ .|.
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~------p~s~~eL~~~l~~-~g~ 51 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAA-----GHEVEVRDLLTE------PWTAETLRPFFGD-LPV 51 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcC------CCCHHHHHHHHHH-cCH
Confidence 456779999999877666654 223666666544 4589999999963 453
No 238
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=79.97 E-value=2.7 Score=26.60 Aligned_cols=53 Identities=15% Similarity=0.326 Sum_probs=36.3
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceee
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFD 137 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (201)
|+.|....|+-|......|.++..+. ++.+-.|.+++ +++ +. ++|+..-|++.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~-------d~~----l~-~~Y~~~IPVl~ 54 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDE-------DPE----LF-EKYGYRIPVLH 54 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTT-------THH----HH-HHSCTSTSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCC-------CHH----HH-HHhcCCCCEEE
Confidence 66777899999998888888764333 47777777761 333 34 46788888773
No 239
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=79.62 E-value=6.5 Score=34.61 Aligned_cols=43 Identities=9% Similarity=0.041 Sum_probs=30.2
Q ss_pred cCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEe
Q 028944 61 LSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (201)
Q Consensus 61 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~v 105 (201)
++++++.+.|+.|+...|..|......|+++. .+.++ +.+...
T Consensus 361 ~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~ 403 (555)
T TIGR03143 361 FGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEAV 403 (555)
T ss_pred HHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEEe
Confidence 34567778888999889989988777777776 44454 554433
No 240
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=79.31 E-value=6.1 Score=26.89 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=34.8
Q ss_pred EEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcc
Q 028944 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAE 132 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 132 (201)
..|..+.|..|++....|.+. +..++++-+.-+ +-+.++++++++. .|..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~------p~t~~el~~~l~~-~g~~ 51 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKN------PPTKSELEAIFAK-LGLT 51 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCC------CcCHHHHHHHHHH-cCCc
Confidence 356779999999988877763 223555555433 5589999999954 4653
No 241
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=79.12 E-value=6.8 Score=27.50 Aligned_cols=43 Identities=14% Similarity=0.005 Sum_probs=34.8
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
.+|++++-|...|-|.|..+=..|.++.++.++- ..|..|.++
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence 4689999999999999999999999999998764 455555544
No 242
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.94 E-value=8.3 Score=34.51 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.0
Q ss_pred CCCcEEEEEEeecCCCCcHHhHH
Q 028944 64 YRGKVLLVVNVASKCGLTQSNYK 86 (201)
Q Consensus 64 ~~gk~~lv~f~~~~C~~C~~~~~ 86 (201)
-++||+++...++||-=|..+..
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ 63 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAH 63 (667)
T ss_pred HhCCCEEEEeccccccchHHHhh
Confidence 46899999999999988997764
No 243
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=76.95 E-value=0.56 Score=36.38 Aligned_cols=28 Identities=4% Similarity=0.019 Sum_probs=22.8
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHH
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEK 94 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~ 94 (201)
....+.|..++|+.|++....+....++
T Consensus 119 ~~~~~~f~~~~~~~~~~a~~~~~~~~~~ 146 (244)
T COG1651 119 VLREFPFLDPACPYCRRAAQAARCAADQ 146 (244)
T ss_pred EEEEeecCCCCcHHHHHHHHHHHHhccc
Confidence 5677778889999999988888877664
No 244
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=75.88 E-value=7.2 Score=28.65 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=46.3
Q ss_pred cEEEEEEeecCCCC-cHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccce
Q 028944 67 KVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPI 135 (201)
Q Consensus 67 k~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (201)
|-+++.+=.|=-|- -+...|++.++.++.++.|+.++-+|.+ ++..++.+. ++++++|-.
T Consensus 29 kgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~-~~l~v~fi~ 89 (175)
T COG2179 29 KGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAA-EKLGVPFIY 89 (175)
T ss_pred cEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhh-hhcCCceee
Confidence 56666666554444 5667889999999999999999999865 788888888 567887743
No 245
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=75.65 E-value=2.8 Score=32.42 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=24.2
Q ss_pred ceEEEECCCCcEEEecCCCCCchhhhhc
Q 028944 169 FTKFLVNKEGKVVERYAPTTSPLKIEVG 196 (201)
Q Consensus 169 P~~~lid~~G~i~~~~~g~~~~~~l~~~ 196 (201)
..++|+|++|+|+....|..++++.++.
T Consensus 249 GyV~L~D~s~kIRW~g~G~aTp~Eve~L 276 (287)
T KOG4614|consen 249 GYVLLLDKSGKIRWQGFGTATPEEVEQL 276 (287)
T ss_pred EEEEEEccCceEEEeecCCCCHHHHHHH
Confidence 4679999999999999999998876654
No 246
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=74.38 E-value=9 Score=25.93 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=33.9
Q ss_pred EEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcc
Q 028944 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAE 132 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 132 (201)
..|..+.|..|++....|++. +..++++-+.-+ +-+.+++.++++. .+..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~------~~t~~el~~~l~~-~~~~ 51 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKT------PPTAAELRELLAK-LGIS 51 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccC------CcCHHHHHHHHHH-cCCC
Confidence 456789999999987666653 223555555433 4589999999954 4643
No 247
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=74.37 E-value=5.5 Score=29.26 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=32.1
Q ss_pred EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+|.+|+..-||.|-...+.|.++.+++.+-.+....+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 4678888999999999999999999994444666666544
No 248
>PRK10853 putative reductase; Provisional
Probab=73.84 E-value=8.6 Score=26.42 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=34.7
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcc
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAE 132 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 132 (201)
+..|..+.|..|++...-|.+. +-.++++-+--+ +-+.+++++++.+ .|+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k~------p~s~~eL~~~l~~-~g~~ 52 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRVD------GLDSELLQGFIDE-LGWE 52 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehccC------CcCHHHHHHHHHH-cCHH
Confidence 3466779999999988777763 223455555433 4589999999954 4644
No 249
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=72.29 E-value=23 Score=22.69 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=22.9
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEe
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~v 105 (201)
.++++|-|+..+|. .....+.++.+.+++. +.+..+
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~~~ 52 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFGHT 52 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEEEE
Confidence 46777788877775 4666667776666543 544433
No 250
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=71.87 E-value=16 Score=24.62 Aligned_cols=27 Identities=11% Similarity=-0.004 Sum_probs=19.6
Q ss_pred cHHhHHHHHHHHHH---hcCCCeEEEEeecC
Q 028944 81 TQSNYKELNVLYEK---YKNQDFEVLAFPCN 108 (201)
Q Consensus 81 C~~~~~~l~~~~~~---~~~~~~~vv~vs~d 108 (201)
-....+.+.++.++ ++++ +.++.+..+
T Consensus 29 ~~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~ 58 (111)
T cd03072 29 LESLKEFKQAVARQLISEKGA-INFLTADGD 58 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCce-EEEEEEech
Confidence 35566778888888 8776 777777654
No 251
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=71.55 E-value=36 Score=24.75 Aligned_cols=88 Identities=13% Similarity=0.144 Sum_probs=56.0
Q ss_pred CcccceEEecCCCCeeecCCCCC-cEEEEEE----eecCC-CCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCC
Q 028944 44 KSIYDFTVKDIRGNDVSLSGYRG-KVLLVVN----VASKC-GLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS 117 (201)
Q Consensus 44 ~~~p~f~l~~~~G~~~~l~~~~g-k~~lv~f----~~~~C-~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~ 117 (201)
..+|..++.+.+--.+.+.+++| |.+|+.= -+++- ...+.+++.+++.+..|+++++.+++=|... .+.|.
T Consensus 20 ~~~Ph~~vptf~~ip~~I~~~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~---~~~D~ 96 (190)
T KOG2961|consen 20 FVLPHVSVPTFRYIPWEILKRKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGL---TEYDH 96 (190)
T ss_pred eeccccccCccccCCcchhhccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCc---cccCC
Confidence 45677777777777777777766 5555531 12222 2267899999999999999888888766541 23344
Q ss_pred HHHHHHHHHhhcCccccee
Q 028944 118 NEEIQEVACTMFKAEFPIF 136 (201)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~ 136 (201)
..+..+.+++ ....|++
T Consensus 97 d~s~Ak~le~--k~gIpVl 113 (190)
T KOG2961|consen 97 DDSKAKALEA--KIGIPVL 113 (190)
T ss_pred chHHHHHHHH--hhCCceE
Confidence 4444444533 5556666
No 252
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=70.97 E-value=16 Score=25.40 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=33.6
Q ss_pred EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHh
Q 028944 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 127 (201)
++..|..+.|..|++...-|++. +-.++++-+--+ +-+.++++.|++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~~~~------p~t~~eL~~~l~~ 49 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS-----GHDVEVQDILKE------PWHADTLRPYFGN 49 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeccCC------CcCHHHHHHHHHH
Confidence 35567789999999988777764 223455555433 4589999999954
No 253
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=69.44 E-value=30 Score=23.47 Aligned_cols=58 Identities=7% Similarity=-0.027 Sum_probs=45.8
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC-CeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcc
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAE 132 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 132 (201)
...++-|--..-|.-...++.+.++++++... ++.||-|.- |.-..+..|..+.|++.
T Consensus 21 g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDP--------D~FPllv~yWektF~ID 79 (120)
T cd03074 21 GIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDP--------DDFPLLVPYWEKTFGID 79 (120)
T ss_pred CceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECC--------ccCchhhHHHHhhcCcc
Confidence 35666666677888999999999999999865 799999974 46677888886766655
No 254
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=69.43 E-value=8.2 Score=32.66 Aligned_cols=21 Identities=5% Similarity=0.153 Sum_probs=17.0
Q ss_pred EEEEeecCCCCcHHhHHHHHH
Q 028944 70 LVVNVASKCGLTQSNYKELNV 90 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~ 90 (201)
|+.|-.+|||+|.+.-..|.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 667888999999987766666
No 255
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=68.06 E-value=44 Score=24.37 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=29.7
Q ss_pred CCcccceEEec-CCCCeeecCCC---CCcEEEEEEeecC-CCCcHHhHHHHH
Q 028944 43 PKSIYDFTVKD-IRGNDVSLSGY---RGKVLLVVNVASK-CGLTQSNYKELN 89 (201)
Q Consensus 43 ~~~~p~f~l~~-~~G~~~~l~~~---~gk~~lv~f~~~~-C~~C~~~~~~l~ 89 (201)
|.-+|++.+.. .+|+.+.+.+. .|++.++.|-..- ++..+..+..+.
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~ 52 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLC 52 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHH
Confidence 34567777666 47888887774 5899999997643 333444444333
No 256
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=67.14 E-value=36 Score=22.98 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=42.3
Q ss_pred eeecCCCCC-cEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCC---CCCCHHHHHHHHHhhcCc
Q 028944 58 DVSLSGYRG-KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQ---EPGSNEEIQEVACTMFKA 131 (201)
Q Consensus 58 ~~~l~~~~g-k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~---~~~~~~~~~~~~~~~~~~ 131 (201)
.-.++++.+ .+-|+-|+ .|+-|+ -..+....+++.+.|+.+|.+++=...+. .=-..+.+++.+++++|+
T Consensus 27 ~g~F~~y~~~~~elvgf~--~CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi 100 (107)
T PF08821_consen 27 KGAFARYDDEDVELVGFF--TCGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGI 100 (107)
T ss_pred cCccccCCCCCeEEEEEe--eCCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCC
Confidence 334666764 57777775 455555 55566666666677888888774322111 112478888888766544
No 257
>PRK13620 psbV cytochrome c-550; Provisional
Probab=66.82 E-value=1.8 Score=32.76 Aligned_cols=62 Identities=27% Similarity=0.283 Sum_probs=35.5
Q ss_pred ecCCCCeeecCCC---CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC--CeEEEEeecCCCCCCCCCCHHHHHHHHH
Q 028944 52 KDIRGNDVSLSGY---RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVAC 126 (201)
Q Consensus 52 ~~~~G~~~~l~~~---~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~ 126 (201)
.|.+|+.+++..- +||-+ |..||..|...-. -+..++- +...+++.. +++++.+.+.+|++
T Consensus 90 ln~~G~tvtfS~eq~~~GkqL----F~~~Ca~CHVgG~-----Tktnp~vgpdLt~LaaAt-----ppRdn~e~Lv~wLk 155 (215)
T PRK13620 90 LNPQGDNVTLSLKQVAEGKQL----FAYACGQCHVGGI-----TKTDPNVGLDPEALALAT-----PPRDSVESLVDYLH 155 (215)
T ss_pred eCCCCCeecCCHHHHHHHHHH----HHhhhhhccCCCC-----CCCCCCCCCCHHHHhccC-----CCCCCHHHHHHHHh
Confidence 4668888876663 46554 3889999983110 0010111 233333322 44588999999995
Q ss_pred h
Q 028944 127 T 127 (201)
Q Consensus 127 ~ 127 (201)
+
T Consensus 156 d 156 (215)
T PRK13620 156 N 156 (215)
T ss_pred C
Confidence 3
No 258
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=65.94 E-value=54 Score=24.82 Aligned_cols=40 Identities=8% Similarity=0.012 Sum_probs=32.8
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
+..-+|+.|+-..-..|+.+-.+|..+++.+-+ ..++-|+
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvn 122 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVN 122 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEe
Confidence 345788888888888899999999999888754 7888886
No 259
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=65.79 E-value=15 Score=24.57 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=28.9
Q ss_pred EeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028944 73 NVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (201)
Q Consensus 73 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (201)
|..+.|..|++.+.-|.+ +|+.+-.+.+- .++-+.+++.++++. .+..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~-------~gi~~~~~d~~----k~p~s~~el~~~l~~-~~~~~~ 50 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-------NGIEYEFIDYK----KEPLSREELRELLSK-LGNGPD 50 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-------TT--EEEEETT----TS---HHHHHHHHHH-HTSSGG
T ss_pred CcCCCCHHHHHHHHHHHH-------cCCCeEeehhh----hCCCCHHHHHHHHHH-hcccHH
Confidence 456899999988877775 34444444433 224589999999954 575544
No 260
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=63.11 E-value=2 Score=27.24 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=18.2
Q ss_pred ceEEEECCCCcEEEec-CCCCCchhhhhccc
Q 028944 169 FTKFLVNKEGKVVERY-APTTSPLKIEVGTT 198 (201)
Q Consensus 169 P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~ 198 (201)
|...++|.+|+.+.+. ....+.+++.+.|.
T Consensus 43 P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~ 73 (78)
T PF08806_consen 43 PELVLLDEDGEEVERINIEKWKTDEIEEFLN 73 (78)
T ss_dssp -EEEEE-SSS--SEEEE-SSSSHCHHHHHHH
T ss_pred CEEEEEcCCCCEEEEEEcccCCHHHHHHHHH
Confidence 9999999999986664 34456777777664
No 261
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.74 E-value=12 Score=27.52 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=24.0
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhc
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYK 96 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~ 96 (201)
+.+|+...||.|-...+.|.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567778999999999999999999984
No 262
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=60.10 E-value=43 Score=27.73 Aligned_cols=134 Identities=9% Similarity=0.090 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHhhcCCCcccccccccccCCCcccceEEecCCCCeeecCCCCCcEEEEEEeecCCCC--cHHhH
Q 028944 8 NSNWVSFLFIVFAFFLYFYKYPSSFSAKNMATQEAPKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGL--TQSNY 85 (201)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~--C~~~~ 85 (201)
++.|+++..+++.++.+++....+..-+.-... =++.+.+-+.+.-.-.+-+.++|+|+.+.-.. -+++.
T Consensus 1 ~~~~l~la~l~L~~~~~~~~aeegLefP~YDGk--------DRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~ 72 (383)
T PF01216_consen 1 KVTWLLLAGLYLSVLGCCCRAEEGLEFPEYDGK--------DRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQF 72 (383)
T ss_dssp -------------------------SSSS-SSS----------CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHH
T ss_pred CCceeeHHHHHHHHhccccchhhccCCccCCCc--------cceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHH
Q ss_pred ---HHHHHHHHHhcCC-CeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCcc
Q 028944 86 ---KELNVLYEKYKNQ-DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFL 161 (201)
Q Consensus 86 ---~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 161 (201)
..+-++..+.-.. |+.+-.|.+. ....+++.+
T Consensus 73 ~m~E~~LELaAQVlE~~gigfg~VD~~--------Kd~klAKKL------------------------------------ 108 (383)
T PF01216_consen 73 QMTELVLELAAQVLEDKGIGFGMVDSK--------KDAKLAKKL------------------------------------ 108 (383)
T ss_dssp HHHHHHHHHHHHHCGGCTEEEEEEETT--------TTHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHHHhccccCcceEEeccH--------HHHHHHHhc------------------------------------
Q ss_pred cccccccceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 162 GDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 162 ~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
++.-.+++|++ ++|+++ -|.|..+++.+...|
T Consensus 109 --gv~E~~SiyVf-kd~~~I-EydG~~saDtLVeFl 140 (383)
T PF01216_consen 109 --GVEEEGSIYVF-KDGEVI-EYDGERSADTLVEFL 140 (383)
T ss_dssp --T--STTEEEEE-ETTEEE-EE-S--SHHHHHHHH
T ss_pred --CccccCcEEEE-ECCcEE-EecCccCHHHHHHHH
No 263
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=59.96 E-value=4.3 Score=33.21 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHhhcCcccceeeeecc-CCCCchhhHHHHHhhcCCcccccccccceEEEECC-CCcEEEecCCCCCchhh
Q 028944 116 GSNEEIQEVACTMFKAEFPIFDKIDV-NGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNK-EGKVVERYAPTTSPLKI 193 (201)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l 193 (201)
.+.+..+....++ ....-+. .|. .|....++| .+...|++.+||| .|+-+++..|...++++
T Consensus 118 gsld~ak~~a~sk-~~wllV~--~Dtseg~~~~~Fy-------------~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~f 181 (356)
T KOG1364|consen 118 GSLDAAKSTASSK-QRWLLVL--DDTSEGQPFSAFY-------------HISSLPHIAIIDPITGERVKRWSGVIEPEQF 181 (356)
T ss_pred CChhhhhhccccc-ceEEEEe--eccCCCCchhhhe-------------eccCCceEEEECCchhhhhhhhccccCHHHH
Confidence 3566777776443 3333333 232 233334444 6666799999999 78888888888887766
Q ss_pred hhcccC
Q 028944 194 EVGTTI 199 (201)
Q Consensus 194 ~~~l~~ 199 (201)
...+++
T Consensus 182 l~~l~~ 187 (356)
T KOG1364|consen 182 LSDLNE 187 (356)
T ss_pred HHHHHH
Confidence 655543
No 264
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=59.39 E-value=36 Score=25.22 Aligned_cols=10 Identities=10% Similarity=0.126 Sum_probs=7.3
Q ss_pred ecCCCC--cHHh
Q 028944 75 ASKCGL--TQSN 84 (201)
Q Consensus 75 ~~~C~~--C~~~ 84 (201)
..-|+| |...
T Consensus 104 ~~~CtH~gc~l~ 115 (178)
T PRK13474 104 NAVCTHLGCVVP 115 (178)
T ss_pred cCCCCCCCCccc
Confidence 478999 8743
No 265
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=58.37 E-value=73 Score=23.55 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=46.9
Q ss_pred CCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028944 55 RGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (201)
Q Consensus 55 ~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (201)
++..++++++. -..++--.++-|-.--..-..+..+..+++=+...+|+|+-+. +.-.+.++.|++++.+-...
T Consensus 24 ~~i~v~~e~we-~~~~~~~~~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvsv~~~~-----pk~del~akF~~EH~H~d~E 97 (181)
T COG1791 24 SKIEVSFERWE-ATALIKHGAEKEHIIDAYETEIDRLIRERGYKNRDVVSVSPSN-----PKLDELRAKFLQEHLHTDDE 97 (181)
T ss_pred ccceeEhhhhh-hccccccCcchhhhHhhHHHHHHHHHHhhCCceeeEEEeCCCC-----ccHHHHHHHHHHHhccCCce
Confidence 44556666654 1222222366666634466678888888887779999999653 33457778888887655543
No 266
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=57.86 E-value=31 Score=28.53 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=14.4
Q ss_pred cccceEEecCCCCeeecCCC
Q 028944 45 SIYDFTVKDIRGNDVSLSGY 64 (201)
Q Consensus 45 ~~p~f~l~~~~G~~~~l~~~ 64 (201)
..-+++++|..|+.+++..-
T Consensus 40 ~~~pvtitD~~G~~Vti~~~ 59 (359)
T PRK09534 40 CSFPVTETDATGTEITLDER 59 (359)
T ss_pred CCCcEEEEeCCCCEEEecCC
Confidence 34468888988987776653
No 267
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.43 E-value=18 Score=27.05 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=4.3
Q ss_pred cEEEEEE
Q 028944 67 KVLLVVN 73 (201)
Q Consensus 67 k~~lv~f 73 (201)
+|.|..|
T Consensus 80 ~P~l~lf 86 (188)
T COG3117 80 APVLTLF 86 (188)
T ss_pred cceEEEE
Confidence 4666666
No 268
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=53.71 E-value=46 Score=23.88 Aligned_cols=15 Identities=7% Similarity=-0.122 Sum_probs=11.8
Q ss_pred CCCCcHHhHHHHHHH
Q 028944 77 KCGLTQSNYKELNVL 91 (201)
Q Consensus 77 ~C~~C~~~~~~l~~~ 91 (201)
+||+|.+.-..|+++
T Consensus 15 t~~~C~~ak~iL~~~ 29 (147)
T cd03031 15 TFEDCNNVRAILESF 29 (147)
T ss_pred cChhHHHHHHHHHHC
Confidence 899998777777654
No 269
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=53.63 E-value=14 Score=22.35 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=20.3
Q ss_pred EEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeec
Q 028944 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (201)
Q Consensus 72 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~ 107 (201)
.|.+.+||.|++..-.|.+. +-.++++.|+.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~ 33 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----GITVELREVEL 33 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCC
Confidence 45678999999876666654 22366666643
No 270
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=53.50 E-value=87 Score=24.67 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=57.7
Q ss_pred EeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCCchhhHHH
Q 028944 73 NVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKF 152 (201)
Q Consensus 73 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 152 (201)
+.+..|+= ...+.++..+|.++|+.+|-|.-++ -.+...+-+.+..+ ...|-++.| |..-......|+.
T Consensus 58 ~G~rGtGK----SSlVkall~~y~~~GLRlIev~k~~-----L~~l~~l~~~l~~~-~~kFIlf~D-DLsFe~~d~~yk~ 126 (249)
T PF05673_consen 58 WGARGTGK----SSLVKALLNEYADQGLRLIEVSKED-----LGDLPELLDLLRDR-PYKFILFCD-DLSFEEGDTEYKA 126 (249)
T ss_pred ecCCCCCH----HHHHHHHHHHHhhcCceEEEECHHH-----hccHHHHHHHHhcC-CCCEEEEec-CCCCCCCcHHHHH
Confidence 55556643 3446778888999999999997543 24556666666433 566776643 3444455566887
Q ss_pred HHhhcCCcccccccccceEEEECCCCcE
Q 028944 153 LKSEKGGFLGDAIKWNFTKFLVNKEGKV 180 (201)
Q Consensus 153 ~~~~~~~~~~~~i~~~P~~~lid~~G~i 180 (201)
+++--. +++..-|.-++|-..-+-
T Consensus 127 LKs~Le----Ggle~~P~NvliyATSNR 150 (249)
T PF05673_consen 127 LKSVLE----GGLEARPDNVLIYATSNR 150 (249)
T ss_pred HHHHhc----CccccCCCcEEEEEecch
Confidence 776544 345555777766554433
No 271
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=53.46 E-value=16 Score=24.45 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=23.9
Q ss_pred EeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 73 NVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 73 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
||-.+||.|......+.+.- ....+.++.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d---~~~~l~~~~~~ 32 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD---RGGRLRFVDIQ 32 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC---CCCCEEEEECC
Confidence 67789999999999888871 12358888884
No 272
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=52.72 E-value=74 Score=28.31 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=35.7
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHHhc-CCCeEEEEeecCC
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYK-NQDFEVLAFPCNQ 109 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~vv~vs~d~ 109 (201)
...+|.|.+|.--.-++.+|.|-.++..-. .+++.||++.-.+
T Consensus 88 ~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~ 131 (573)
T PLN02640 88 TLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTK 131 (573)
T ss_pred CeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCC
Confidence 589999999999889999999999986432 3479999998653
No 273
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=52.03 E-value=24 Score=28.70 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=23.9
Q ss_pred cccceEEecCCCCeeecCCCC-CcEEEEEEeec
Q 028944 45 SIYDFTVKDIRGNDVSLSGYR-GKVLLVVNVAS 76 (201)
Q Consensus 45 ~~p~f~l~~~~G~~~~l~~~~-gk~~lv~f~~~ 76 (201)
..|...++|.+|+.+..+++. +.+..+.|-+.
T Consensus 99 G~pk~La~D~~GnPIKASdL~vnSp~~~lfeyP 131 (321)
T TIGR03171 99 GFPKSLLVDSSGNPIKASSIPVNSPIITIFEYP 131 (321)
T ss_pred CCCceEEecCCCCeeeHHHccCCCcccccccCc
Confidence 457788899999999999985 45665555554
No 274
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=50.99 E-value=31 Score=25.92 Aligned_cols=13 Identities=0% Similarity=-0.013 Sum_probs=8.7
Q ss_pred CCCcccceEEecC
Q 028944 42 APKSIYDFTVKDI 54 (201)
Q Consensus 42 ~~~~~p~f~l~~~ 54 (201)
....-|+|...+.
T Consensus 36 ~~~~~Pdy~~~~~ 48 (192)
T PRK10893 36 VNNNDPTYQSQHT 48 (192)
T ss_pred CCCCCCCEEEecc
Confidence 4566688876654
No 275
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.89 E-value=22 Score=26.54 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=38.5
Q ss_pred EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHH
Q 028944 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVA 125 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 125 (201)
.++.||...|+.-......+.++..-....|+.|+.-. +++.+.++++.-+++|.
T Consensus 41 YFv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTa--qp~~qs~~draLL~d~W 95 (218)
T COG1535 41 YFVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTA--QPGEQSPEDRALLKDFW 95 (218)
T ss_pred hhcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEe--cCCcCCHHHHHHHHHhc
Confidence 45677888888877888899999988888888877643 34444444455555555
No 276
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=50.86 E-value=17 Score=26.82 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=24.9
Q ss_pred EEeecCCCCcHHhHHHHHHHHHHhcCC-CeEEEEe
Q 028944 72 VNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAF 105 (201)
Q Consensus 72 ~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~v 105 (201)
.|..+.|+.|-..-|.+.++..+++.+ .+.++.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEc
Confidence 577899999999999999999999876 3444443
No 277
>PF12563 Hemolysin_N: Hemolytic toxin N terminal; InterPro: IPR022220 This domain family is found in bacteria, and is approximately 190 amino acids in length. The family is found in association with PF07968 from PFAM, PF00652 from PFAM. This family is a bacterial virulence factor - hemolysin - which forms pores in erythrocytes and causes them to lyse. ; PDB: 1XEZ_A 3O44_I.
Probab=50.53 E-value=24 Score=26.30 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=27.5
Q ss_pred CCCeee-cCCCCCcEEEEEEeec-CCCCcHHhHHHHHHHHHHhcCCCeE-EEEeecCCCCCCCCCCHHHHHHHHHhhcCc
Q 028944 55 RGNDVS-LSGYRGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYKNQDFE-VLAFPCNQFAGQEPGSNEEIQEVACTMFKA 131 (201)
Q Consensus 55 ~G~~~~-l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~-vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 131 (201)
.|..+. ++.+++.--++++-+. |- .=....|.+.++.+..-+++-+ +|-+|... +.+..+++++-+++.+|+
T Consensus 31 ~g~Ai~ilSslqd~~~i~Y~Na~~w~-~e~~~~~tl~~ird~Vlnq~krylvDFS~ie----de~~k~~aq~~~r~~~G~ 105 (187)
T PF12563_consen 31 QGDAIEILSSLQDSSQINYINAANWL-DEQTAPPTLAQIRDDVLNQNKRYLVDFSQIE----DEEEKAQAQAKFRKQYGL 105 (187)
T ss_dssp ----------------EEEEEGGGGG---------HHHHHHHHTTS--EEEEE-TT------SHHHHHHHHHHHHHHHS-
T ss_pred chHHHHHHHHhcCccceeEeehhhhh-ccccccchHHHHHHHHHhcCCeEEEEccccC----ChHHHHHHHHHHHHHhCc
Confidence 444443 4556665556666654 43 3334458888888887766544 66776551 112345566666666777
Q ss_pred ccc
Q 028944 132 EFP 134 (201)
Q Consensus 132 ~~~ 134 (201)
.|.
T Consensus 106 sF~ 108 (187)
T PF12563_consen 106 SFD 108 (187)
T ss_dssp B--
T ss_pred Ccc
Confidence 764
No 278
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=48.12 E-value=82 Score=25.07 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=27.5
Q ss_pred EEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 50 TVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 50 ~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+++|..| ++++..-..+++|+.+-+ .+.+.+-|+.-|+|.-|
T Consensus 35 tVkde~G-t~tv~k~PKRVVVLE~SF----------------aDaLaal~v~PVGIADD 76 (310)
T COG4594 35 TVKDELG-TFTVPKTPKRVVVLELSF----------------ADALAALGVTPVGIADD 76 (310)
T ss_pred eeeccCC-ceecCCCCceEEEEEecH----------------HHHHHHcCCeeeeeccC
Confidence 3778788 677777766788887642 23333446888888644
No 279
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=46.77 E-value=1.4e+02 Score=25.06 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=63.5
Q ss_pred CcccceEEecCCCCeeec-------------CCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCC--CeEEEEeecC
Q 028944 44 KSIYDFTVKDIRGNDVSL-------------SGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCN 108 (201)
Q Consensus 44 ~~~p~f~l~~~~G~~~~l-------------~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d 108 (201)
-++|.|-......+.+.- +...|+|++++|- +.+.++++.+.++.+ ...+.+|+..
T Consensus 270 LpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p---------~I~~~eq~a~~lk~~~~~~~i~~Vhs~ 340 (441)
T COG4098 270 LPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP---------EIETMEQVAAALKKKLPKETIASVHSE 340 (441)
T ss_pred CCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEec---------chHHHHHHHHHHHhhCCccceeeeecc
Confidence 356788776654443321 2235789988874 344455555444322 2566777764
Q ss_pred CCCCCCCCCHHHHHHHHH------------hhcCcccceeeeeccCCCCchhhHHHHHhhcCCcccccccccceEEEECC
Q 028944 109 QFAGQEPGSNEEIQEVAC------------TMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNK 176 (201)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~ 176 (201)
+ .+..|.+++|.+ ++ |.+||.+. ...-+...+-+-....-+-.|..|.. +=-|
T Consensus 341 d-----~~R~EkV~~fR~G~~~lLiTTTILER-GVTfp~vd-V~Vlgaeh~vfTesaLVQIaGRvGRs--------~~~P 405 (441)
T COG4098 341 D-----QHRKEKVEAFRDGKITLLITTTILER-GVTFPNVD-VFVLGAEHRVFTESALVQIAGRVGRS--------LERP 405 (441)
T ss_pred C-----ccHHHHHHHHHcCceEEEEEeehhhc-ccccccce-EEEecCCcccccHHHHHHHhhhccCC--------CcCC
Confidence 3 456788888865 44 67777542 22222222111111111122333322 2347
Q ss_pred CCcEEEecCCCC
Q 028944 177 EGKVVERYAPTT 188 (201)
Q Consensus 177 ~G~i~~~~~g~~ 188 (201)
+|.+...+.|..
T Consensus 406 tGdv~FFH~G~s 417 (441)
T COG4098 406 TGDVLFFHYGKS 417 (441)
T ss_pred CCcEEEEeccch
Confidence 899988888865
No 280
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=45.32 E-value=1.2e+02 Score=22.15 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=42.6
Q ss_pred cCCCcccceEEec-CCCCeeecCCC---CCcEEEEEEeecCCCC-cHHhHHHHHHHH-------HHhcCC------CeEE
Q 028944 41 EAPKSIYDFTVKD-IRGNDVSLSGY---RGKVLLVVNVASKCGL-TQSNYKELNVLY-------EKYKNQ------DFEV 102 (201)
Q Consensus 41 ~~~~~~p~f~l~~-~~G~~~~l~~~---~gk~~lv~f~~~~C~~-C~~~~~~l~~~~-------~~~~~~------~~~v 102 (201)
.+|..+|+..++. .||+.+.+.+. .|++.|+.|-...-.. +...+..+.+.. ..|... -+.+
T Consensus 31 ~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~~~ 110 (169)
T PF07976_consen 31 RPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVFDV 110 (169)
T ss_dssp -TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSEEE
T ss_pred CCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCeeEE
Confidence 4899999999866 68999998884 6899999997754433 655555555533 344432 2888
Q ss_pred EEeecC
Q 028944 103 LAFPCN 108 (201)
Q Consensus 103 v~vs~d 108 (201)
+.|...
T Consensus 111 ~~I~~~ 116 (169)
T PF07976_consen 111 LLIHSS 116 (169)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 888754
No 281
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=45.27 E-value=70 Score=19.49 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHH
Q 028944 55 RGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKEL 88 (201)
Q Consensus 55 ~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l 88 (201)
+|..+.+-++++..+.|.| .-.|..|+.....+
T Consensus 15 dGGdv~lv~v~~~~V~V~l-~GaC~gC~~s~~Tl 47 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRL-TGACSGCPSSDMTL 47 (68)
T ss_dssp TTEEEEEEEEETTEEEEEE-ESSCCSSCCHHHHH
T ss_pred cCCcEEEEEecCCEEEEEE-EeCCCCCCCHHHHH
Confidence 6777778787776666666 45565665444444
No 282
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=45.26 E-value=19 Score=21.99 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=15.0
Q ss_pred EEEeecCCCCcHHhHHHHHHH
Q 028944 71 VVNVASKCGLTQSNYKELNVL 91 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~ 91 (201)
..|.+..||.|++..-.|...
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~ 23 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYH 23 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHC
Confidence 345668899999887666553
No 283
>PF12354 Internalin_N: Bacterial adhesion/invasion protein N terminal; PDB: 2OMT_A 1H6U_A 3RFS_A 3RFJ_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=44.65 E-value=8.6 Score=22.80 Aligned_cols=10 Identities=50% Similarity=0.973 Sum_probs=0.0
Q ss_pred hhHhHHHHHH
Q 028944 6 MKNSNWVSFL 15 (201)
Q Consensus 6 m~~~~~~~~~ 15 (201)
||+..|++.+
T Consensus 1 Mkk~~~lk~~ 10 (57)
T PF12354_consen 1 MKKKNWLKNL 10 (57)
T ss_dssp ----------
T ss_pred CchhHHHHHH
Confidence 4444444443
No 284
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=44.62 E-value=16 Score=20.77 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=13.4
Q ss_pred EEECCCCcEEEecCCCC
Q 028944 172 FLVNKEGKVVERYAPTT 188 (201)
Q Consensus 172 ~lid~~G~i~~~~~g~~ 188 (201)
|.|+|||++.....|-.
T Consensus 3 ~~I~~dG~V~~~v~G~~ 19 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFK 19 (48)
T ss_pred EEECCCcEEEEEEEecc
Confidence 78999999988765543
No 285
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=44.18 E-value=6.6 Score=27.76 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=12.1
Q ss_pred cCCCCcHHhHHHHH
Q 028944 76 SKCGLTQSNYKELN 89 (201)
Q Consensus 76 ~~C~~C~~~~~~l~ 89 (201)
..||+|+...|.|.
T Consensus 10 i~CPhCRQ~ipALt 23 (163)
T TIGR02652 10 IRCPHCRQNIPALT 23 (163)
T ss_pred CcCchhhcccchhe
Confidence 57999999999875
No 286
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=43.76 E-value=6.6 Score=27.69 Aligned_cols=14 Identities=14% Similarity=0.301 Sum_probs=12.1
Q ss_pred cCCCCcHHhHHHHH
Q 028944 76 SKCGLTQSNYKELN 89 (201)
Q Consensus 76 ~~C~~C~~~~~~l~ 89 (201)
..||+|+...|.|.
T Consensus 7 i~CPhCRq~ipALt 20 (161)
T PF09654_consen 7 IQCPHCRQTIPALT 20 (161)
T ss_pred CcCchhhcccchhe
Confidence 57999999999875
No 287
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=42.95 E-value=25 Score=20.94 Aligned_cols=30 Identities=7% Similarity=-0.081 Sum_probs=19.7
Q ss_pred EEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 72 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
.|..++||.|++..-.|... +-.++.+.++
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~-----~l~~~~~~v~ 32 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK-----GIDVPLVTVD 32 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc-----CCCceEEEee
Confidence 45668899999877776664 2235555554
No 288
>PLN03207 stomagen; Provisional
Probab=42.88 E-value=17 Score=24.01 Aligned_cols=13 Identities=31% Similarity=0.202 Sum_probs=6.6
Q ss_pred ccceEEecCCCCe
Q 028944 46 IYDFTVKDIRGND 58 (201)
Q Consensus 46 ~p~f~l~~~~G~~ 58 (201)
.|+-.....+|..
T Consensus 47 ~~q~~~~~l~g~~ 59 (113)
T PLN03207 47 PHQETVKLLNGGH 59 (113)
T ss_pred Cchhccccccccc
Confidence 3444455555654
No 289
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=42.55 E-value=77 Score=21.47 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=35.1
Q ss_pred cCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCC---CCCCCHHHHHHHHHhhcCc
Q 028944 76 SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAG---QEPGSNEEIQEVACTMFKA 131 (201)
Q Consensus 76 ~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~---~~~~~~~~~~~~~~~~~~~ 131 (201)
..|+.-......++...++|+ +++++++.|.... ..+.+.++..+++.++|..
T Consensus 24 N~~~~~~~~~a~lr~W~er~g---a~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y~f 79 (111)
T PF14062_consen 24 NYCPDTADIIAVLRYWEERYG---AEIVGIGFDTLELSVARPPQTPEEAEALAAEHYAF 79 (111)
T ss_pred CCCCCHHHHHHHHHHHHHHhC---EEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457777788888888888875 5666665442111 1245779999999887443
No 290
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=41.70 E-value=81 Score=19.22 Aligned_cols=21 Identities=10% Similarity=-0.081 Sum_probs=15.0
Q ss_pred EEEeecCCCCcHHhHHHHHHH
Q 028944 71 VVNVASKCGLTQSNYKELNVL 91 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~ 91 (201)
..+..++||.|++..-.|.+.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL 23 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc
Confidence 345568999999777666654
No 291
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=41.36 E-value=12 Score=24.47 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=20.3
Q ss_pred cCCCC-cHHhHHHHHHHHHHhcCCCeEE
Q 028944 76 SKCGL-TQSNYKELNVLYEKYKNQDFEV 102 (201)
Q Consensus 76 ~~C~~-C~~~~~~l~~~~~~~~~~~~~v 102 (201)
.+||. -.....++++..++++.+|+++
T Consensus 64 nDcpeA~~eL~~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 64 NDCPEAAKELQKEIKEAKADLRKKGVDV 91 (91)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 67888 4455568888999998888753
No 292
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=40.99 E-value=76 Score=26.13 Aligned_cols=44 Identities=7% Similarity=0.013 Sum_probs=38.0
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
.|||+++.|-...=|.++..+..+++...+..-.|+-++++...
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~~ 200 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQGS 200 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 58999999988777889999999999999888778999998753
No 293
>COG5510 Predicted small secreted protein [Function unknown]
Probab=39.30 E-value=54 Score=18.21 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=8.6
Q ss_pred hhHhHHHHHHHHHHHHHHHhh
Q 028944 6 MKNSNWVSFLFIVFAFFLYFY 26 (201)
Q Consensus 6 m~~~~~~~~~~~~~~~~~~~~ 26 (201)
||+-+.+..++++..++++++
T Consensus 2 mk~t~l~i~~vll~s~llaaC 22 (44)
T COG5510 2 MKKTILLIALVLLASTLLAAC 22 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 444333333333444444444
No 294
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=39.19 E-value=31 Score=19.71 Aligned_cols=31 Identities=6% Similarity=-0.044 Sum_probs=19.9
Q ss_pred EEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeec
Q 028944 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (201)
Q Consensus 72 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~ 107 (201)
.|...+||.|.+....++.. +-.++++.++.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~ 33 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDL 33 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCC
Confidence 35567899999777666665 22356666654
No 295
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=38.67 E-value=3e+02 Score=24.86 Aligned_cols=51 Identities=14% Similarity=0.024 Sum_probs=32.9
Q ss_pred CCCcccceEEec-CCCCeeecCC-C--CCcEEEEEEeec-CCCCcHHhHHHHHHHH
Q 028944 42 APKSIYDFTVKD-IRGNDVSLSG-Y--RGKVLLVVNVAS-KCGLTQSNYKELNVLY 92 (201)
Q Consensus 42 ~~~~~p~f~l~~-~~G~~~~l~~-~--~gk~~lv~f~~~-~C~~C~~~~~~l~~~~ 92 (201)
.|..+|+..+.. .+++.+.+.+ + .|++.++.|-.. ..+..+..+..+.+..
T Consensus 465 ~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l 520 (634)
T PRK08294 465 IGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFL 520 (634)
T ss_pred CceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHH
Confidence 788899999877 4676666654 3 578999888653 2234555554444433
No 296
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=38.59 E-value=80 Score=26.11 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=15.2
Q ss_pred cceEEecCCCCeeecCCCCCcEE
Q 028944 47 YDFTVKDIRGNDVSLSGYRGKVL 69 (201)
Q Consensus 47 p~f~l~~~~G~~~~l~~~~gk~~ 69 (201)
.+.+++|..|+++++.+--.|++
T Consensus 30 ~~~tvtD~~Gr~V~ip~~p~RIv 52 (374)
T PRK14048 30 WPMTVTDAVGREVTIPAPPKAVL 52 (374)
T ss_pred CCeEEEeCCCCEEecCCCCcEEE
Confidence 35777787887777766544544
No 297
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=38.49 E-value=1.3e+02 Score=20.81 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=24.4
Q ss_pred ecCCCC--cH----HhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 75 ASKCGL--TQ----SNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 75 ~~~C~~--C~----~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+-.|.. |- .++-.+....+.++++|+.|--.++.
T Consensus 10 amCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~ 49 (123)
T PF06953_consen 10 AMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLA 49 (123)
T ss_dssp S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETT
T ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccc
Confidence 445544 54 57778888888888889999888876
No 298
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=37.80 E-value=56 Score=23.13 Aligned_cols=30 Identities=17% Similarity=-0.002 Sum_probs=20.8
Q ss_pred ceEEEECCCCcEEEecCCC-CCchhhhhccc
Q 028944 169 FTKFLVNKEGKVVERYAPT-TSPLKIEVGTT 198 (201)
Q Consensus 169 P~~~lid~~G~i~~~~~g~-~~~~~l~~~l~ 198 (201)
|..-+.|.+|++.....-. .+.+.++++++
T Consensus 118 P~l~llDadgk~kE~lsI~kWntdtl~eff~ 148 (154)
T KOG3384|consen 118 PVLKLLDADGKHKESLSIDKWNTDTLEEFFR 148 (154)
T ss_pred CeeEeecCCCCccceeeecccChHHHHHHHH
Confidence 8889999999997664333 35566665543
No 299
>COG4991 Uncharacterized protein with a bacterial SH3 domain homologue [Function unknown]
Probab=37.72 E-value=96 Score=22.50 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=10.8
Q ss_pred CCcccceEEecCCCCeeecCC
Q 028944 43 PKSIYDFTVKDIRGNDVSLSG 63 (201)
Q Consensus 43 ~~~~p~f~l~~~~G~~~~l~~ 63 (201)
|..-|.+. .-..|..+.+.-
T Consensus 49 gT~Yp~vg-~Ip~G~~~~i~G 68 (155)
T COG4991 49 GTAYPAVG-VIPSGSAATIYG 68 (155)
T ss_pred CCCCceee-EecCCceecchh
Confidence 33444443 345777777663
No 300
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=37.60 E-value=25 Score=25.71 Aligned_cols=30 Identities=17% Similarity=0.039 Sum_probs=21.2
Q ss_pred cccccceEEEECCCCcEEEecCCCCCchhhhhccc
Q 028944 164 AIKWNFTKFLVNKEGKVVERYAPTTSPLKIEVGTT 198 (201)
Q Consensus 164 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 198 (201)
++.++|+++| +|+ ..+.|....+.+++.|+
T Consensus 164 gv~GvP~~vv---~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 164 GVFGVPTFVV---NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp TCSSSSEEEE---TTT--EEEESCSSHHHHHHHH-
T ss_pred CCcccCEEEE---CCE--EEEECCCCHHHHHHHhC
Confidence 6777799666 666 55678787787877664
No 301
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=37.35 E-value=26 Score=28.52 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=9.4
Q ss_pred EEecCCCCeeecCCC
Q 028944 50 TVKDIRGNDVSLSGY 64 (201)
Q Consensus 50 ~l~~~~G~~~~l~~~ 64 (201)
.+-..+|..++.+++
T Consensus 37 vvA~Vn~~~It~~e~ 51 (336)
T PRK00059 37 TVATVNGEKITRGDL 51 (336)
T ss_pred ceEEECCEEeCHHHH
Confidence 344556777776665
No 302
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=37.24 E-value=1.1e+02 Score=23.91 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEeecCC
Q 028944 85 YKELNVLYEKYKNQDFEVLAFPCNQ 109 (201)
Q Consensus 85 ~~~l~~~~~~~~~~~~~vv~vs~d~ 109 (201)
...|.++..++.+.|+.|++|..|.
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~ 219 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDM 219 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4566777788888899999999983
No 303
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=36.81 E-value=1e+02 Score=21.01 Aligned_cols=9 Identities=11% Similarity=0.029 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 028944 118 NEEIQEVAC 126 (201)
Q Consensus 118 ~~~~~~~~~ 126 (201)
...+.+.++
T Consensus 99 ~~~~~~~l~ 107 (140)
T TIGR01753 99 VDDWEERLK 107 (140)
T ss_pred HHHHHHHHH
Confidence 345555553
No 304
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=36.42 E-value=30 Score=20.68 Aligned_cols=19 Identities=5% Similarity=0.055 Sum_probs=13.5
Q ss_pred EeecCCCCcHHhHHHHHHH
Q 028944 73 NVASKCGLTQSNYKELNVL 91 (201)
Q Consensus 73 f~~~~C~~C~~~~~~l~~~ 91 (201)
+...+||.|++..-.|...
T Consensus 4 y~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 4 YIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred EecCCCcHhHHHHHHHHHc
Confidence 5568999999766655543
No 305
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=35.68 E-value=1.4e+02 Score=23.81 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=30.1
Q ss_pred CcccceEEecCCCCeeecCCCC--CcEEEEEEeecCCCCcHHhHH-HHHHHHHHhc--CCCeEEEEeecC
Q 028944 44 KSIYDFTVKDIRGNDVSLSGYR--GKVLLVVNVASKCGLTQSNYK-ELNVLYEKYK--NQDFEVLAFPCN 108 (201)
Q Consensus 44 ~~~p~f~l~~~~G~~~~l~~~~--gk~~lv~f~~~~C~~C~~~~~-~l~~~~~~~~--~~~~~vv~vs~d 108 (201)
..+|=|++.|.+|..+-...-. ++.+...|+ |+.+.. .++++..... ..+++|..|+++
T Consensus 73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp TTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred cCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 5689999999999988665554 555555554 344444 3444444332 346999999765
No 306
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=35.59 E-value=1.8e+02 Score=21.32 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=26.7
Q ss_pred EEeecCCCCcHHhHHHHHHHHHHhcCC-Ce--EEEEeecC
Q 028944 72 VNVASKCGLTQSNYKELNVLYEKYKNQ-DF--EVLAFPCN 108 (201)
Q Consensus 72 ~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~--~vv~vs~d 108 (201)
+|+..-||.|-.-.+.|.++.++++.+ ++ ....+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~ 42 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELN 42 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeC
Confidence 455678999999999999999999631 34 44444444
No 307
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=35.36 E-value=1.6e+02 Score=23.46 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccceeeeeccCCCCchhhHHHHHhhcCCccccccc
Q 028944 87 ELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIK 166 (201)
Q Consensus 87 ~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 166 (201)
-+.++..+|.++|..+|-|+-++ -.+-..+-+-++. ..-.|-+++| |..-+.-...|+.++.--. +++.
T Consensus 101 LVKA~~~e~~~~glrLVEV~k~d-----l~~Lp~l~~~Lr~-~~~kFIlFcD-DLSFe~gd~~yK~LKs~Le----G~ve 169 (287)
T COG2607 101 LVKALLNEYADEGLRLVEVDKED-----LATLPDLVELLRA-RPEKFILFCD-DLSFEEGDDAYKALKSALE----GGVE 169 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEcHHH-----HhhHHHHHHHHhc-CCceEEEEec-CCCCCCCchHHHHHHHHhc----CCcc
Confidence 45667778888899999996331 1222333344433 2445666653 3333444566888776433 3566
Q ss_pred ccceEEEECCCCcE
Q 028944 167 WNFTKFLVNKEGKV 180 (201)
Q Consensus 167 ~~P~~~lid~~G~i 180 (201)
.-|.-+|+-..-+-
T Consensus 170 ~rP~NVl~YATSNR 183 (287)
T COG2607 170 GRPANVLFYATSNR 183 (287)
T ss_pred cCCCeEEEEEecCC
Confidence 66887777654433
No 308
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=35.14 E-value=82 Score=21.06 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=22.2
Q ss_pred EEEEeecCCCCcHHhHH-HHHHHH--HHhcCC-CeEEEEe
Q 028944 70 LVVNVASKCGLTQSNYK-ELNVLY--EKYKNQ-DFEVLAF 105 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~-~l~~~~--~~~~~~-~~~vv~v 105 (201)
|-.|+-+-||+|+..+. .|.... .++.+. ++.++..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~ 42 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPF 42 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEE
Confidence 45677899999998754 455533 455544 3444444
No 309
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=35.03 E-value=35 Score=27.38 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=13.6
Q ss_pred eecCCCCcHHhHHHHHHHHHHh
Q 028944 74 VASKCGLTQSNYKELNVLYEKY 95 (201)
Q Consensus 74 ~~~~C~~C~~~~~~l~~~~~~~ 95 (201)
..+|||-|-... .++.+.+.+
T Consensus 16 ~~~~CpGCg~~~-il~~l~~al 36 (286)
T PRK11867 16 EPRWCPGCGDGS-ILAALQRAL 36 (286)
T ss_pred CCCcCCCCCCHH-HHHHHHHHH
Confidence 346999998544 555555555
No 310
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=34.92 E-value=62 Score=21.99 Aligned_cols=41 Identities=10% Similarity=0.203 Sum_probs=27.0
Q ss_pred ccceEEec-CCCCe---eecCCCCCcEEEEEEeecCCCCcHHhHH
Q 028944 46 IYDFTVKD-IRGND---VSLSGYRGKVLLVVNVASKCGLTQSNYK 86 (201)
Q Consensus 46 ~p~f~l~~-~~G~~---~~l~~~~gk~~lv~f~~~~C~~C~~~~~ 86 (201)
.|.-+|-. ..++. +.+++..|..++|.=-++-|+.|+--+.
T Consensus 42 FP~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr 86 (118)
T PF14427_consen 42 FPESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMR 86 (118)
T ss_pred CchhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHH
Confidence 45554433 33433 3445556899999999999999995443
No 311
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=34.70 E-value=95 Score=22.17 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=26.5
Q ss_pred CCCCcEEEEE-EeecCCCCcHHhHHHHHHHHHHhcCCCeE-EEEeecC
Q 028944 63 GYRGKVLLVV-NVASKCGLTQSNYKELNVLYEKYKNQDFE-VLAFPCN 108 (201)
Q Consensus 63 ~~~gk~~lv~-f~~~~C~~C~~~~~~l~~~~~~~~~~~~~-vv~vs~d 108 (201)
+|+|+++++= |.+..-..-......|+++..++++.|+. |+-|+.|
T Consensus 47 qfKGRv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D 94 (142)
T PF10673_consen 47 QFKGRVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSD 94 (142)
T ss_pred hcCceEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 3678766541 21221122233334788888888888887 6666655
No 312
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.46 E-value=2.6e+02 Score=22.93 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEEeec----CCCCcHHhHHHHHHHHHHhcC
Q 028944 62 SGYRGKVLLVVNVAS----KCGLTQSNYKELNVLYEKYKN 97 (201)
Q Consensus 62 ~~~~gk~~lv~f~~~----~C~~C~~~~~~l~~~~~~~~~ 97 (201)
...++=.+++.|-|. .|..|..+..+.+-+.+.+..
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~ 95 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRY 95 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhc
Confidence 333443455555553 599999999999998888763
No 313
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=33.40 E-value=79 Score=24.14 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=34.5
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
+|-|+||..+.-.-|-|......|+++...|+. +.+|-|-
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~ 149 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIP 149 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecc
Confidence 467999999999999999999999999999986 6766663
No 314
>TIGR03045 PS_II_C550 cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.
Probab=32.64 E-value=12 Score=27.17 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=19.4
Q ss_pred ecCCCCeeecCCC---CCcEEEEEEeecCCCCcHH
Q 028944 52 KDIRGNDVSLSGY---RGKVLLVVNVASKCGLTQS 83 (201)
Q Consensus 52 ~~~~G~~~~l~~~---~gk~~lv~f~~~~C~~C~~ 83 (201)
.|..|++++++.- +|+-+ |..+|..|..
T Consensus 37 ~~~~g~~~~~~~~~~~~Gk~l----F~~~Ca~CH~ 67 (159)
T TIGR03045 37 LNSTGETVTLTEEQVKRGKRL----FNTACGTCHV 67 (159)
T ss_pred ecCCCCeEEeChHhHHHHHHH----HHHHHHHhCC
Confidence 3567888876653 46543 3899999984
No 315
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=32.56 E-value=6.8 Score=22.03 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=16.5
Q ss_pred cCCCCcHHhHHHHHHHHHHhcC
Q 028944 76 SKCGLTQSNYKELNVLYEKYKN 97 (201)
Q Consensus 76 ~~C~~C~~~~~~l~~~~~~~~~ 97 (201)
-.|.+|+.-++.|.++.+++.+
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i~~ 38 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKIVR 38 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHHTB
T ss_pred CCCCCcHhHHHHHHHHHHHHHc
Confidence 3688999999999998888753
No 316
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=32.41 E-value=1.9e+02 Score=25.33 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=37.2
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhc--CCCeEEEEeecCC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYK--NQDFEVLAFPCNQ 109 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~vv~vs~d~ 109 (201)
.+...+|.|.+|.--.-++.+|.|-.++..-. .+++.||++.-.+
T Consensus 15 ~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lpp~~~~IiG~aR~~ 61 (491)
T PLN02539 15 TGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLPPDEVHIFGYARSK 61 (491)
T ss_pred CCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCcEEEEEECCC
Confidence 34689999999999889999999999987644 3579999998663
No 317
>PRK13618 psbV cytochrome c-550; Provisional
Probab=32.35 E-value=11 Score=27.64 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=17.5
Q ss_pred cCCCCeeecCC--C-CCcEEEEEEeecCCCCcHH
Q 028944 53 DIRGNDVSLSG--Y-RGKVLLVVNVASKCGLTQS 83 (201)
Q Consensus 53 ~~~G~~~~l~~--~-~gk~~lv~f~~~~C~~C~~ 83 (201)
+..|+++++.. . +|+-+ |...|..|..
T Consensus 39 ~~~g~tv~~s~~~~~~G~~l----F~~~Ca~CH~ 68 (163)
T PRK13618 39 NAQGKTVTLSLKQVKEGKRL----FNYACAQCHA 68 (163)
T ss_pred CCCCCeeecChhhHHHHHHH----HHHHHHHhcC
Confidence 45677776554 3 45543 3889999984
No 318
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.38 E-value=92 Score=26.29 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=27.4
Q ss_pred ecCCCCcH--HhHHHHHHHHHHhcCCCeEEEEeecCC
Q 028944 75 ASKCGLTQ--SNYKELNVLYEKYKNQDFEVLAFPCNQ 109 (201)
Q Consensus 75 ~~~C~~C~--~~~~~l~~~~~~~~~~~~~vv~vs~d~ 109 (201)
...|++|| .....++.+.++..-++|.|++++...
T Consensus 78 t~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e~ 114 (420)
T COG3581 78 TQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNSEN 114 (420)
T ss_pred ecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeeccc
Confidence 34999999 566778888888776679999999553
No 319
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.34 E-value=2e+02 Score=22.26 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=27.4
Q ss_pred EEEEEEee-cCCCCcHHhHHHHHHHHHHhcCC-CeEEEE
Q 028944 68 VLLVVNVA-SKCGLTQSNYKELNVLYEKYKNQ-DFEVLA 104 (201)
Q Consensus 68 ~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~ 104 (201)
.+-|++|+ .-||.|-.--+.|.++..++... .+.+..
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w 43 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRW 43 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEe
Confidence 44455555 68999999999999999999854 444443
No 320
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=30.66 E-value=40 Score=19.00 Aligned_cols=15 Identities=40% Similarity=0.826 Sum_probs=8.4
Q ss_pred hhHhHHHHHHHHHHH
Q 028944 6 MKNSNWVSFLFIVFA 20 (201)
Q Consensus 6 m~~~~~~~~~~~~~~ 20 (201)
||+.+|+.+++++++
T Consensus 1 ~kk~rwiili~iv~~ 15 (47)
T PRK10299 1 MKKFRWVVLVVVVLA 15 (47)
T ss_pred CceeeehHHHHHHHH
Confidence 566667665444443
No 321
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=30.35 E-value=41 Score=19.07 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=18.4
Q ss_pred ceEEEECCCCcEEEecCCCCCchhhhhcc
Q 028944 169 FTKFLVNKEGKVVERYAPTTSPLKIEVGT 197 (201)
Q Consensus 169 P~~~lid~~G~i~~~~~g~~~~~~l~~~l 197 (201)
.++.|.+.||+++..-.+..+...-++.|
T Consensus 6 ~~f~L~a~ng~viasse~Y~sk~~a~~~I 34 (49)
T PF07411_consen 6 FRFRLKAGNGEVIASSEGYSSKADAEKGI 34 (49)
T ss_dssp EEEEEE-TTS-EEEEBEEBSSHHHHHHHH
T ss_pred EEEEEEcCCCCEEEecCCcCCHHHHHHHH
Confidence 46678999999999766665655444433
No 322
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=30.25 E-value=2.7e+02 Score=21.84 Aligned_cols=37 Identities=5% Similarity=0.087 Sum_probs=23.4
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEE
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~ 104 (201)
..|.+.|..-.+.- +.....-.++...+..+|++|+.
T Consensus 49 ~~ktVyv~vrNTSd---~~~~~l~~~i~~~L~~kGY~iv~ 85 (243)
T PRK13731 49 SERTVFLQIKNTSD---KDMSGLQGKIADAVKAKGYQVVT 85 (243)
T ss_pred CCceEEEEEeeCCC---cchHHHHHHHHHHHHhCCeEEec
Confidence 37888888887763 22222334455667788888754
No 323
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.04 E-value=1.8e+02 Score=19.82 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=18.0
Q ss_pred CCeeecCCC--CCcEEEEEEeecCCCCcH
Q 028944 56 GNDVSLSGY--RGKVLLVVNVASKCGLTQ 82 (201)
Q Consensus 56 G~~~~l~~~--~gk~~lv~f~~~~C~~C~ 82 (201)
|...++..+ +|+-.-+.|.|+.--.-+
T Consensus 53 ~y~y~i~ayn~~Gkkk~v~f~a~~~lr~~ 81 (113)
T COG5294 53 GYEYTITAYNKNGKKKEVKFTATHNLRKE 81 (113)
T ss_pred cceeeehhhccCCcEEEEEEEecCcCCCc
Confidence 445666666 578888888887764433
No 324
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=29.77 E-value=47 Score=19.75 Aligned_cols=20 Identities=5% Similarity=-0.189 Sum_probs=14.1
Q ss_pred EEeecCCCCcHHhHHHHHHH
Q 028944 72 VNVASKCGLTQSNYKELNVL 91 (201)
Q Consensus 72 ~f~~~~C~~C~~~~~~l~~~ 91 (201)
.|...+||.|++..-.+...
T Consensus 3 ly~~~~~~~~~~v~~~l~~~ 22 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAEK 22 (73)
T ss_pred EEECCCChhHHHHHHHHHHc
Confidence 45567899999877666543
No 325
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=29.57 E-value=75 Score=24.22 Aligned_cols=42 Identities=7% Similarity=0.018 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028944 84 NYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (201)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (201)
..|.+.++...++.+|.++.-||- --..+..+.++..|+++.
T Consensus 89 lT~Gi~eLv~~L~~~~~~v~liSG---------GF~~~i~~Va~~Lgi~~~ 130 (227)
T KOG1615|consen 89 LTPGIRELVSRLHARGTQVYLISG---------GFRQLIEPVAEQLGIPKS 130 (227)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEcC---------ChHHHHHHHHHHhCCcHh
Confidence 345677777788888899888873 456788888888888874
No 326
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=29.57 E-value=23 Score=25.92 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=18.5
Q ss_pred cCCCCeeecCCC---CCcEEEEEEeecCCCCcHH
Q 028944 53 DIRGNDVSLSGY---RGKVLLVVNVASKCGLTQS 83 (201)
Q Consensus 53 ~~~G~~~~l~~~---~gk~~lv~f~~~~C~~C~~ 83 (201)
|.+|+++++..- +|+.+ |...|..|..
T Consensus 39 ~~~g~~~~~t~~~~~~Gk~l----F~~~CaaCH~ 68 (163)
T CHL00133 39 DSSGKTVVLTPEQVKRGKRL----FNASCGACHV 68 (163)
T ss_pred CCCCCeEeeCHHHHHHHHHH----HHhhHHHhCC
Confidence 557887776653 56554 3679999984
No 327
>PRK13043 superantigen-like protein; Reviewed
Probab=28.79 E-value=2.5e+02 Score=21.96 Aligned_cols=34 Identities=9% Similarity=-0.145 Sum_probs=27.4
Q ss_pred eecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeec
Q 028944 74 VASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (201)
Q Consensus 74 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~ 107 (201)
-.+|..+-+..-|+=.....+|+++.+.|.+|.-
T Consensus 81 ~~~w~~~i~~~g~~s~~~ankfK~K~VDVFgV~e 114 (241)
T PRK13043 81 TWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKD 114 (241)
T ss_pred eeEeeeeEEEecccCHHHHHHhcCCceeEEEEee
Confidence 3477777777777888888999999999999963
No 328
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=28.75 E-value=1.8e+02 Score=19.33 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=14.9
Q ss_pred cccceEEecCCCCeeecCCCCCcEEEEEE
Q 028944 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVN 73 (201)
Q Consensus 45 ~~p~f~l~~~~G~~~~l~~~~gk~~lv~f 73 (201)
.-|++++.-.+|..+.-....|+...|..
T Consensus 37 ~~pevti~~~~~~~ieEyRv~G~l~~IkV 65 (105)
T PF11191_consen 37 QEPEVTIIEDGGSTIEEYRVNGQLYMIKV 65 (105)
T ss_pred CCCCEEEEecCCcEEEEEEECCeEeeEEE
Confidence 35677775544544433333566555544
No 329
>PRK10540 lipoprotein; Provisional
Probab=28.35 E-value=83 Score=19.59 Aligned_cols=10 Identities=0% Similarity=0.109 Sum_probs=4.0
Q ss_pred hhHhHHHHHH
Q 028944 6 MKNSNWVSFL 15 (201)
Q Consensus 6 m~~~~~~~~~ 15 (201)
|+++++....
T Consensus 3 ~~~kr~~~~~ 12 (72)
T PRK10540 3 VTSKKMAAAV 12 (72)
T ss_pred hHHHHHHHHH
Confidence 3334444433
No 330
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=28.02 E-value=1.2e+02 Score=19.52 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCCc--H---HhHHHHHHHHHHhcCCCeEEEEee
Q 028944 78 CGLT--Q---SNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 78 C~~C--~---~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
|..| + ..+.+|++-.+++++.=|+++++.
T Consensus 36 ~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D 69 (84)
T cd00307 36 CGPIEGRSEAQVLAALEACLAEHPGEYVRLIGID 69 (84)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 5556 3 556677777778877668899985
No 331
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=26.86 E-value=2.6e+02 Score=22.88 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=18.0
Q ss_pred HhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcc
Q 028944 94 KYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAE 132 (201)
Q Consensus 94 ~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 132 (201)
++..+|+.|+-|+-+ .+.-+.+++-+.++++.+
T Consensus 68 eLAkrG~nvvLIsRt------~~KL~~v~kEI~~~~~ve 100 (312)
T KOG1014|consen 68 ELAKRGFNVVLISRT------QEKLEAVAKEIEEKYKVE 100 (312)
T ss_pred HHHHcCCEEEEEeCC------HHHHHHHHHHHHHHhCcE
Confidence 334467777777744 234445555554555644
No 332
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=26.81 E-value=2.2e+02 Score=24.97 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=36.2
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhc-CCCeEEEEeecCC
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYK-NQDFEVLAFPCNQ 109 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~vv~vs~d~ 109 (201)
...++|.|.+|.--.-++.+|.|-.++..-. .+++.||++.-.+
T Consensus 8 ~~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~IiG~aR~~ 52 (495)
T PRK05722 8 EPCDLVIFGATGDLARRKLLPALYNLYKAGLLPEDFRIIGVARRD 52 (495)
T ss_pred CCeEEEEeCCchHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCC
Confidence 3578999999999889999999999986543 3479999998663
No 333
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=26.37 E-value=40 Score=21.52 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=16.2
Q ss_pred cCCCCcHHhHHHHHHHHHHhc
Q 028944 76 SKCGLTQSNYKELNVLYEKYK 96 (201)
Q Consensus 76 ~~C~~C~~~~~~l~~~~~~~~ 96 (201)
..||.|+.++.....+...++
T Consensus 37 ~~C~~C~~e~~~~~~~~~~L~ 57 (84)
T TIGR02949 37 EACPECLEEYGLEQAVKKLLK 57 (84)
T ss_pred HhCHHHHHHHHHHHHHHHHHH
Confidence 479999999987777766654
No 334
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=26.26 E-value=45 Score=20.56 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.0
Q ss_pred ceEEEECCCCcEEEe
Q 028944 169 FTKFLVNKEGKVVER 183 (201)
Q Consensus 169 P~~~lid~~G~i~~~ 183 (201)
.+.||+|++|+++..
T Consensus 54 g~~~ivd~~G~ii~h 68 (81)
T PF02743_consen 54 GYAFIVDKNGTIIAH 68 (81)
T ss_dssp BEEEEEETTSBBCE-
T ss_pred EEEEEEECCCCEEEe
Confidence 457999999999866
No 335
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=26.18 E-value=2.5e+02 Score=24.54 Aligned_cols=44 Identities=11% Similarity=-0.050 Sum_probs=36.3
Q ss_pred CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhc-CCCeEEEEeecC
Q 028944 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYK-NQDFEVLAFPCN 108 (201)
Q Consensus 65 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~vv~vs~d 108 (201)
.+..++|.|.+|.--.=++.+|.|-.++..-. .+++.||+++-.
T Consensus 9 ~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lp~~~~IiG~aR~ 53 (484)
T PRK12854 9 APPTVFVLFGATGDLAKRKLLPGLFHLARAGLLPPDWRIVGTGRG 53 (484)
T ss_pred CCCeEEEEeCCchHHhhhhHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 34689999999998888999999999986543 347999999866
No 336
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=26.16 E-value=1.3e+02 Score=21.35 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=28.9
Q ss_pred EEEEEeecCCCCcHH-------hHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 69 LLVVNVASKCGLTQS-------NYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~-------~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
.=|.|-+|.|-.|.. .-..+.++.++|...++.|+-=+.|
T Consensus 31 aevvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ae 77 (150)
T PF04723_consen 31 AEVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAE 77 (150)
T ss_pred ceEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCC
Confidence 446788899998964 2346778888898888777766544
No 337
>COG3016 PhuW Uncharacterized iron-regulated protein [Function unknown]
Probab=26.06 E-value=3.4e+02 Score=21.65 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=41.3
Q ss_pred CCcccceEEecCCCCeeecCCC-----CCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCe
Q 028944 43 PKSIYDFTVKDIRGNDVSLSGY-----RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDF 100 (201)
Q Consensus 43 ~~~~p~f~l~~~~G~~~~l~~~-----~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~ 100 (201)
.++..+..+....|.++|++++ .-.+++|-=|.++-.+-..++..++++- ++..+++
T Consensus 32 ~d~~~~yil~t~tg~~iS~q~LiaeL~nadvIlvGEkHdn~~~h~~Ql~l~kal~-e~~~q~i 93 (295)
T COG3016 32 SDTFYDYILATPTGEEISFQALIAELLNADVILVGEKHDNEEIHELQLKLFKALH-ERYRQVI 93 (295)
T ss_pred CccccceeeecCcCceecHHHHHHHHhcCCEEEEecccCchhHHHHHHHHHHHHH-Hhcccce
Confidence 3455677788899999999886 3357777777777777788888888887 4444433
No 338
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=25.95 E-value=2.5e+02 Score=23.70 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=43.9
Q ss_pred CcEEEEEEeecCCCC----cHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcc
Q 028944 66 GKVLLVVNVASKCGL----TQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAE 132 (201)
Q Consensus 66 gk~~lv~f~~~~C~~----C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 132 (201)
.+...|-||.+.|-. =+.....+...+.++++..+.|.+-.+| .+++++..-++.+|++.
T Consensus 41 k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n-------~t~~~IL~k~k~~F~id 104 (465)
T KOG1387|consen 41 KNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFN-------VTPENILNKVKNKFDID 104 (465)
T ss_pred hhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCC-------CCHHHHHHHHHHhcCce
Confidence 346677888899933 5678889999999998764555554443 68999988887776654
No 339
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=25.65 E-value=2.6e+02 Score=23.88 Aligned_cols=10 Identities=30% Similarity=0.807 Sum_probs=5.8
Q ss_pred EEECCCCcEE
Q 028944 172 FLVNKEGKVV 181 (201)
Q Consensus 172 ~lid~~G~i~ 181 (201)
.++|.+|+++
T Consensus 249 ~vvd~~G~~l 258 (446)
T PRK14324 249 VVVDEKGEIV 258 (446)
T ss_pred EEECCCCCEe
Confidence 4566666554
No 340
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=25.61 E-value=3.1e+02 Score=21.58 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=22.0
Q ss_pred EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecC
Q 028944 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+|=.|-+-.|..|+.--..|.++.++ .++.-++..+|
T Consensus 44 VVELfTSQGCsSCPPAd~~l~k~a~~---~~vlALsyhVd 80 (261)
T COG5429 44 VVELFTSQGCSSCPPADANLAKLADD---PGVLALSYHVD 80 (261)
T ss_pred EEEEeecCCcCCCChHHHHHHHhccC---CCEEEEEEeec
Confidence 34445556899999877777766533 24444444443
No 341
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=25.48 E-value=3e+02 Score=24.04 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=35.7
Q ss_pred cEEEEEEeecCCCCcHHhHHHHHHHHHHhc-CCCeEEEEeecCC
Q 028944 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYK-NQDFEVLAFPCNQ 109 (201)
Q Consensus 67 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~vv~vs~d~ 109 (201)
..++|.|.+|.--.=++.+|.|-+++.+-. .+++.||++.-.+
T Consensus 8 ~~~~vIfGAtGDLA~RkL~PaL~~L~~~~~lp~~~~IiG~aR~~ 51 (482)
T PRK12853 8 PCTLVIFGATGDLARRKLLPALYRLARAGLLPEDLRIIGVGRDD 51 (482)
T ss_pred CeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCEEEEEeCCc
Confidence 478899999998888999999999987653 3479999998663
No 342
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=25.32 E-value=67 Score=23.88 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=29.4
Q ss_pred EEEeecCCCCcHHhHHHHHHHHHHhc-CCCeEEEEeecCC
Q 028944 71 VVNVASKCGLTQSNYKELNVLYEKYK-NQDFEVLAFPCNQ 109 (201)
Q Consensus 71 v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~vv~vs~d~ 109 (201)
|.|.+|.--..++.+|.|-.++.+-. .+++.||++.-.+
T Consensus 1 VifGatGDLA~RKL~PaL~~L~~~g~lp~~~~Iig~~R~~ 40 (183)
T PF00479_consen 1 VIFGATGDLAKRKLLPALYNLYRDGLLPEDFRIIGVARSD 40 (183)
T ss_dssp EEETTTSHHHHHTHHHHHHHHHHTTSS-SSEEEEEEESS-
T ss_pred CEeccccHHHHhHHHHHHHHHHHhCCCCCCcEEEEecCCc
Confidence 45677776668899999999988654 3469999998663
No 343
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=25.19 E-value=62 Score=24.83 Aligned_cols=36 Identities=11% Similarity=-0.085 Sum_probs=22.9
Q ss_pred cccccceEEEECCCCcEEEecCCCC--CchhhhhcccC
Q 028944 164 AIKWNFTKFLVNKEGKVVERYAPTT--SPLKIEVGTTI 199 (201)
Q Consensus 164 ~i~~~P~~~lid~~G~i~~~~~g~~--~~~~l~~~l~~ 199 (201)
+....|..|..+|+|..-....+.. +....++++++
T Consensus 138 D~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK 175 (249)
T KOG0183|consen 138 DPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEK 175 (249)
T ss_pred CCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHH
Confidence 4555699999999998765543332 33456665554
No 344
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=25.02 E-value=70 Score=18.86 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.1
Q ss_pred CHHHHHHHHHhhcCccccee
Q 028944 117 SNEEIQEVACTMFKAEFPIF 136 (201)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ 136 (201)
|++++..|+.++ .-+||.-
T Consensus 19 t~eeI~~W~eER-rk~~PT~ 37 (56)
T PF10453_consen 19 TPEEIAKWIEER-RKNYPTK 37 (56)
T ss_pred CHHHHHHHHHHH-HHcCCcH
Confidence 899999999887 7788754
No 345
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.89 E-value=4e+02 Score=22.61 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=26.2
Q ss_pred CCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEe
Q 028944 64 YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (201)
Q Consensus 64 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~v 105 (201)
+.|...+=.|++-.|-.|+.....|+-..--.+ ++.=.+|
T Consensus 114 i~g~~~FETy~SltC~nCPDVVQALN~msvlNp--~I~H~~I 153 (520)
T COG3634 114 IDGDFHFETYFSLTCHNCPDVVQALNLMSVLNP--RIKHTAI 153 (520)
T ss_pred cCCceeEEEEEEeeccCChHHHHHHHHHHhcCC--CceeEEe
Confidence 456777888888899889887777665433322 2444444
No 346
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=24.42 E-value=75 Score=18.91 Aligned_cols=30 Identities=3% Similarity=-0.016 Sum_probs=18.8
Q ss_pred EEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEee
Q 028944 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (201)
Q Consensus 72 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs 106 (201)
.|+.++||.|++..-.|... +-.++++.|.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~ 32 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL-----GLELNLKEVN 32 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc-----CCCCEEEEec
Confidence 45678899998666555553 2235555554
No 347
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=24.12 E-value=3.3e+02 Score=23.19 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=5.5
Q ss_pred EEECCCCcEE
Q 028944 172 FLVNKEGKVV 181 (201)
Q Consensus 172 ~lid~~G~i~ 181 (201)
.+||.+|+++
T Consensus 245 ~~vd~~G~~i 254 (443)
T PRK10887 245 IMVDHLGNLV 254 (443)
T ss_pred EEECCCCcEe
Confidence 4556666544
No 348
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=24.07 E-value=2.9e+02 Score=21.24 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=41.2
Q ss_pred eEEecCCCCeeecCCCCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEE
Q 028944 49 FTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVL 103 (201)
Q Consensus 49 f~l~~~~G~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv 103 (201)
+.+.+..+..+++.|-+||..|=.=..-.-.+|......+.+-|-+++++++.=|
T Consensus 78 L~f~~~~~~~~~v~D~~gK~yL~v~r~G~~s~d~~~Ie~~ir~YVaFSG~NFPhi 132 (218)
T PF12119_consen 78 LHFPETDDDEFDVCDEQGKEYLEVERSGEVSHDPALIESFIRSYVAFSGQNFPHI 132 (218)
T ss_pred eeccCCCCCeEEEEcCCCCEEEEEEEcCCcccCHHHHHHHHHHHhcccCCCCcHH
Confidence 4455666778888888888777666555556699999999999999988776433
No 349
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=23.96 E-value=43 Score=22.66 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=8.9
Q ss_pred EEeecCCCC--cHHh
Q 028944 72 VNVASKCGL--TQSN 84 (201)
Q Consensus 72 ~f~~~~C~~--C~~~ 84 (201)
.+-.+.||. |.++
T Consensus 71 rv~~s~CpdkiCv~~ 85 (113)
T PF07009_consen 71 RVIESDCPDKICVKT 85 (113)
T ss_dssp EEEEESTSS-HHHHS
T ss_pred EEEECCCCCcchhhC
Confidence 344577998 9754
No 350
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=23.56 E-value=1.4e+02 Score=21.25 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=27.1
Q ss_pred EEEEEeecCCCCcHH-------hHHHHHHHHHHhcCCCeEEEEeec
Q 028944 69 LLVVNVASKCGLTQS-------NYKELNVLYEKYKNQDFEVLAFPC 107 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~-------~~~~l~~~~~~~~~~~~~vv~vs~ 107 (201)
.=|.|-+|.|-.|.. .-..+.++.++|...++.|+--+.
T Consensus 32 aevvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGaa 77 (154)
T PRK13265 32 AEVVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGAA 77 (154)
T ss_pred ceEEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEeccc
Confidence 346688899988863 234677788888877777665543
No 351
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.45 E-value=1.1e+02 Score=24.56 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=14.4
Q ss_pred ecCCCCcHHh--HHHHHHHHHHh
Q 028944 75 ASKCGLTQSN--YKELNVLYEKY 95 (201)
Q Consensus 75 ~~~C~~C~~~--~~~l~~~~~~~ 95 (201)
.+|||-|... +..+.+...++
T Consensus 7 ~~~CpGCg~~~il~al~~al~~l 29 (279)
T PRK11866 7 PIWCPGCGNYGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCChHHHHHHHHHHHHh
Confidence 4799999844 55666666555
No 352
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=23.34 E-value=44 Score=27.79 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=19.5
Q ss_pred ecCCCCcHHhHHHHHHHHHHhc
Q 028944 75 ASKCGLTQSNYKELNVLYEKYK 96 (201)
Q Consensus 75 ~~~C~~C~~~~~~l~~~~~~~~ 96 (201)
.++||.|...+..|+++.+++-
T Consensus 94 ~t~~p~~~~~~~~lq~~~~~lN 115 (361)
T PF06122_consen 94 QTLCPQCGNIMDKLQKIAQALN 115 (361)
T ss_pred HHhCHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999988773
No 353
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=23.18 E-value=71 Score=25.90 Aligned_cols=8 Identities=13% Similarity=0.111 Sum_probs=6.7
Q ss_pred ecCCCCcH
Q 028944 75 ASKCGLTQ 82 (201)
Q Consensus 75 ~~~C~~C~ 82 (201)
.+|||-|-
T Consensus 18 ~~~CpGCg 25 (301)
T PRK05778 18 TTWCPGCG 25 (301)
T ss_pred CCCCCCCC
Confidence 46999997
No 354
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=23.16 E-value=26 Score=27.97 Aligned_cols=8 Identities=25% Similarity=0.380 Sum_probs=6.4
Q ss_pred cCCCCcHH
Q 028944 76 SKCGLTQS 83 (201)
Q Consensus 76 ~~C~~C~~ 83 (201)
-|||.|+.
T Consensus 266 ~~CP~CQ~ 273 (273)
T COG0266 266 FYCPVCQK 273 (273)
T ss_pred EeCCCCCC
Confidence 58999973
No 355
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=23.09 E-value=1e+02 Score=20.06 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=14.9
Q ss_pred eEEEECCCCcEEEecCCC
Q 028944 170 TKFLVNKEGKVVERYAPT 187 (201)
Q Consensus 170 ~~~lid~~G~i~~~~~g~ 187 (201)
..++.||+|+.+..+.|.
T Consensus 93 ~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred EEEEECCCCCEEEEecCC
Confidence 358999999999887664
No 356
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=23.07 E-value=2.5e+02 Score=18.97 Aligned_cols=26 Identities=4% Similarity=0.059 Sum_probs=16.9
Q ss_pred cccccceEEEECCCCcEEEecCCCCCc
Q 028944 164 AIKWNFTKFLVNKEGKVVERYAPTTSP 190 (201)
Q Consensus 164 ~i~~~P~~~lid~~G~i~~~~~g~~~~ 190 (201)
++...|+.+++ ++|+.+....|..+-
T Consensus 79 gv~~~PaLvf~-R~g~~lG~i~gi~dW 104 (107)
T PF07449_consen 79 GVRRWPALVFF-RDGRYLGAIEGIRDW 104 (107)
T ss_dssp T-TSSSEEEEE-ETTEEEEEEESSSTH
T ss_pred CCccCCeEEEE-ECCEEEEEecCeecc
Confidence 44445886665 679888887776544
No 357
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=22.98 E-value=2.6e+02 Score=19.15 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.2
Q ss_pred CeEEEEee
Q 028944 99 DFEVLAFP 106 (201)
Q Consensus 99 ~~~vv~vs 106 (201)
++.++.|.
T Consensus 132 ~v~v~~i~ 139 (161)
T cd01450 132 GIKVFVVG 139 (161)
T ss_pred CCEEEEEe
Confidence 34444333
No 358
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=22.96 E-value=2.9e+02 Score=24.08 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=42.3
Q ss_pred CcEEEEEEeecCCCCcHHhHHHHHHHHHHhc-CCCeEEEEeecCCCCCCCCCCHHHHHHHHH
Q 028944 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYK-NQDFEVLAFPCNQFAGQEPGSNEEIQEVAC 126 (201)
Q Consensus 66 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~ 126 (201)
....+|.|.+|.--.=++.+|.|-+++.+-. ..++.|+++.-..+ +.+..++.++
T Consensus 6 ~~~~lvIFGatGDLA~RKL~PALy~L~~~g~l~~~~~IiG~aR~~~------s~e~f~~~~~ 61 (483)
T COG0364 6 EPFDLVIFGATGDLARRKLFPALYRLYKEGLLPEDFRIIGVARSKW------SNEEFRALVR 61 (483)
T ss_pred CcceEEEEcccchhhhhhHHHHHHHHHHcCCCCCCceEEEEecCcC------ChHHHHHHHH
Confidence 3578999999999889999999999988764 34689999987643 5555555543
No 359
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=22.95 E-value=68 Score=23.20 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=15.1
Q ss_pred hhHhHHHHHHHHHHHHHHHhhcC
Q 028944 6 MKNSNWVSFLFIVFAFFLYFYKY 28 (201)
Q Consensus 6 m~~~~~~~~~~~~~~~~~~~~~~ 28 (201)
|+++.++.+++++.++++++-.+
T Consensus 1 mknkni~klff~~~lfvmaCkaY 23 (160)
T PF03978_consen 1 MKNKNIVKLFFISMLFVMACKAY 23 (160)
T ss_pred CCcchHHHHHHHHHHHHHHHHHH
Confidence 67778888777766655544444
No 360
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=22.90 E-value=1e+02 Score=24.43 Aligned_cols=83 Identities=8% Similarity=-0.055 Sum_probs=48.4
Q ss_pred cccceEEecCCCCeeecCCCC------CcEEEEEEeecCCCCcH-HhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCC
Q 028944 45 SIYDFTVKDIRGNDVSLSGYR------GKVLLVVNVASKCGLTQ-SNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS 117 (201)
Q Consensus 45 ~~p~f~l~~~~G~~~~l~~~~------gk~~lv~f~~~~C~~C~-~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~ 117 (201)
..|+--+.|+|+.-.+...+. |++.==..|..|.-... ...|...++.+.+..+|+.++-||.-. ...
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~-----~~~ 147 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRS-----EKE 147 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCC-----cch
Confidence 347777888888766655442 22200013555554422 235677777777777888888887531 123
Q ss_pred HHHHHHHHHhhcCccc
Q 028944 118 NEEIQEVACTMFKAEF 133 (201)
Q Consensus 118 ~~~~~~~~~~~~~~~~ 133 (201)
.+...+.+ +++|++.
T Consensus 148 ~~~T~~~L-kk~Gi~~ 162 (266)
T TIGR01533 148 KAATLKNL-KRFGFPQ 162 (266)
T ss_pred HHHHHHHH-HHcCcCC
Confidence 45555666 3467764
No 361
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=22.74 E-value=2.8e+02 Score=19.84 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHH
Q 028944 85 YKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVA 125 (201)
Q Consensus 85 ~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 125 (201)
..=|++-.++++..+-.=+.|+++ +.+.+++..
T Consensus 75 ~~WL~~~~~~L~~l~AvGlVVNV~--------t~~~L~~Lr 107 (142)
T PF11072_consen 75 RQWLQQNAEELKQLGAVGLVVNVA--------TEAALQRLR 107 (142)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHH
Confidence 334555555555555555556654 777777765
No 362
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=22.72 E-value=2.5e+02 Score=20.59 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=41.9
Q ss_pred CcccceEEecCCCCeeecCCC--CC-cEEEEEEeecCCCC-cHHhHHHHHHHHHHhcCCCe--EEEEeecCCCCCCCCCC
Q 028944 44 KSIYDFTVKDIRGNDVSLSGY--RG-KVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQDF--EVLAFPCNQFAGQEPGS 117 (201)
Q Consensus 44 ~~~p~f~l~~~~G~~~~l~~~--~g-k~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~~--~vv~vs~d~~~~~~~~~ 117 (201)
--.|++.+.+..--.+....+ .| |.+++.+=.|=+++ -...-|.+.+..+++++.+. .|+-||... +..++-+
T Consensus 16 l~~P~l~V~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsa-Gs~~d~~ 94 (168)
T PF09419_consen 16 LLLPHLYVPSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSA-GSSDDPD 94 (168)
T ss_pred ccCCCEEcCChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCC-CcccCcc
Confidence 345777776655443333114 34 77888877666544 43444455555555543322 344444332 1111113
Q ss_pred HHHHHHHHHhhcCcc
Q 028944 118 NEEIQEVACTMFKAE 132 (201)
Q Consensus 118 ~~~~~~~~~~~~~~~ 132 (201)
.++++.+- +..+++
T Consensus 95 ~~~a~~~~-~~lgIp 108 (168)
T PF09419_consen 95 GERAEALE-KALGIP 108 (168)
T ss_pred HHHHHHHH-HhhCCc
Confidence 44454444 445654
No 363
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=22.63 E-value=3e+02 Score=26.17 Aligned_cols=41 Identities=10% Similarity=0.003 Sum_probs=32.1
Q ss_pred EEEEEEeecCCCCcHHh----HHHHHHHHHHhcCCCeEEEEeecC
Q 028944 68 VLLVVNVASKCGLTQSN----YKELNVLYEKYKNQDFEVLAFPCN 108 (201)
Q Consensus 68 ~~lv~f~~~~C~~C~~~----~~~l~~~~~~~~~~~~~vv~vs~d 108 (201)
+..+++-.++|+.|... +..|..+.++-+++|+.||++-..
T Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ig~~~p 830 (912)
T TIGR02171 786 WPVANFDATISDPGQQIINENMNSLKAFIDETAKKGVKVIGTIFP 830 (912)
T ss_pred cccccccccccCccHHHHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 56677777889998655 457778888888889999999764
No 364
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.62 E-value=2.8e+02 Score=19.55 Aligned_cols=7 Identities=43% Similarity=0.235 Sum_probs=3.0
Q ss_pred hhHhHHH
Q 028944 6 MKNSNWV 12 (201)
Q Consensus 6 m~~~~~~ 12 (201)
||+|-++
T Consensus 1 ~kkkl~~ 7 (142)
T PRK07718 1 MKNKLIK 7 (142)
T ss_pred CcchHHH
Confidence 4444443
No 365
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=22.59 E-value=3.8e+02 Score=24.19 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=36.7
Q ss_pred CCCcEEEEEEeecCCCCcHHhHHHHHHHHHHhc-CCCeEEEEeecC
Q 028944 64 YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYK-NQDFEVLAFPCN 108 (201)
Q Consensus 64 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~vv~vs~d 108 (201)
..+...+|.|.+|.--.=++.+|.|-.++.+-. .+++.|+++.-.
T Consensus 114 ~~~~~~iVIFGASGDLAkRKL~PALf~L~~~g~Lp~~~~IiG~aRs 159 (604)
T PLN02333 114 DESTVSITVVGASGDLAKKKIFPALFALYYEGCLPEHFTIFGYARS 159 (604)
T ss_pred CCCceEEEEecCccHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 345689999999998889999999999986543 346999999865
No 366
>PF14903 WG_beta_rep: WG containing repeat
Probab=22.56 E-value=60 Score=16.17 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=8.7
Q ss_pred EECCCCcEEEe
Q 028944 173 LVNKEGKVVER 183 (201)
Q Consensus 173 lid~~G~i~~~ 183 (201)
++|.+|+++-.
T Consensus 3 ~id~~G~~vi~ 13 (35)
T PF14903_consen 3 YIDKNGKIVIP 13 (35)
T ss_pred EEeCCCCEEEE
Confidence 68999998754
No 367
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=22.48 E-value=3.7e+02 Score=20.82 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=20.5
Q ss_pred HHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCcccce
Q 028944 93 EKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPI 135 (201)
Q Consensus 93 ~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (201)
.+++++|+.|+-.|- -+...++.+++ ..+...++
T Consensus 29 ~~l~~~G~~~~iaTG--------R~~~~~~~~~~-~l~~~~~~ 62 (272)
T PRK15126 29 ARLRERDITLTFATG--------RHVLEMQHILG-ALSLDAYL 62 (272)
T ss_pred HHHHHCCCEEEEECC--------CCHHHHHHHHH-HcCCCCcE
Confidence 334556777777762 25667777774 45666443
No 368
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=22.24 E-value=3.6e+02 Score=23.02 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=4.7
Q ss_pred CHHHHHHHHH
Q 028944 117 SNEEIQEVAC 126 (201)
Q Consensus 117 ~~~~~~~~~~ 126 (201)
+++++.+..+
T Consensus 220 ~~~~l~~~v~ 229 (448)
T PRK14316 220 HPEALQELVV 229 (448)
T ss_pred CHHHHHHHHh
Confidence 3444555543
No 369
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=22.20 E-value=4.9e+02 Score=22.07 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=5.4
Q ss_pred EEECCCCcEE
Q 028944 172 FLVNKEGKVV 181 (201)
Q Consensus 172 ~lid~~G~i~ 181 (201)
.++|.+|+++
T Consensus 243 ~~vd~~G~~i 252 (434)
T cd05802 243 IAVDEKGNIV 252 (434)
T ss_pred EEECCCCCEe
Confidence 4556666543
No 370
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=22.18 E-value=46 Score=17.17 Aligned_cols=14 Identities=36% Similarity=0.721 Sum_probs=9.9
Q ss_pred EEecCCCCeeecCC
Q 028944 50 TVKDIRGNDVSLSG 63 (201)
Q Consensus 50 ~l~~~~G~~~~l~~ 63 (201)
++.|.+|+.+++.+
T Consensus 14 ~l~Dv~G~~Inl~~ 27 (32)
T PF10813_consen 14 PLKDVKGNPINLYK 27 (32)
T ss_pred cccccCCCEEechh
Confidence 46688888887653
No 371
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=22.13 E-value=2.3e+02 Score=18.22 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=5.5
Q ss_pred cCCCCCcEEEE
Q 028944 61 LSGYRGKVLLV 71 (201)
Q Consensus 61 l~~~~gk~~lv 71 (201)
-+++.|.+-|+
T Consensus 62 ~EdysgdYDVL 72 (100)
T PF05984_consen 62 NEDYSGDYDVL 72 (100)
T ss_pred cccccccccEE
Confidence 34456665443
No 372
>PRK06756 flavodoxin; Provisional
Probab=21.62 E-value=2.3e+02 Score=19.74 Aligned_cols=7 Identities=14% Similarity=0.079 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 028944 119 EEIQEVA 125 (201)
Q Consensus 119 ~~~~~~~ 125 (201)
..+.+.+
T Consensus 104 ~~l~~~l 110 (148)
T PRK06756 104 DILIEKL 110 (148)
T ss_pred HHHHHHH
Confidence 3444444
No 373
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=21.31 E-value=3.8e+02 Score=21.47 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=9.5
Q ss_pred eEEEECCCCcEEEe
Q 028944 170 TKFLVNKEGKVVER 183 (201)
Q Consensus 170 ~~~lid~~G~i~~~ 183 (201)
...||+++.+-++.
T Consensus 101 vLLlVa~~dr~~rI 114 (271)
T COG1512 101 VLLLVAMNDRRVRI 114 (271)
T ss_pred EEEEEEcCCCeEEE
Confidence 35899998854444
No 374
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=21.16 E-value=96 Score=22.12 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=18.8
Q ss_pred eeecCCCCCcEEEEEEee---cCCCCcH
Q 028944 58 DVSLSGYRGKVLLVVNVA---SKCGLTQ 82 (201)
Q Consensus 58 ~~~l~~~~gk~~lv~f~~---~~C~~C~ 82 (201)
.+++.++.|++.++.|.+ -.|+.|-
T Consensus 6 ~~~~~d~p~~~~~~vfl~GCnlrC~~C~ 33 (147)
T TIGR02826 6 IIVFQEVPNEYSLAFYITGCPLGCKGCH 33 (147)
T ss_pred eEEEeecCCCEEEEEEeCCCCCCCCCCC
Confidence 457778888988888886 4577774
No 375
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=20.85 E-value=22 Score=23.86 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=10.5
Q ss_pred ccceEEecCCCCeeecCC
Q 028944 46 IYDFTVKDIRGNDVSLSG 63 (201)
Q Consensus 46 ~p~f~l~~~~G~~~~l~~ 63 (201)
-|.=.+.++||+.+.+..
T Consensus 40 ~~e~~lv~IDgq~YrLPn 57 (118)
T PF14481_consen 40 QPEKNLVDIDGQHYRLPN 57 (118)
T ss_dssp EGGGTEEEETTEEEE--T
T ss_pred ecccceEEEcCcEEeCCc
Confidence 355557777887766544
No 376
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.66 E-value=1.1e+02 Score=16.12 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=14.1
Q ss_pred CHHHHHHHHHhhcCcccce
Q 028944 117 SNEEIQEVACTMFKAEFPI 135 (201)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~ 135 (201)
+.+++++|+++ +|+.++-
T Consensus 5 s~~~L~~wL~~-~gi~~~~ 22 (38)
T PF10281_consen 5 SDSDLKSWLKS-HGIPVPK 22 (38)
T ss_pred CHHHHHHHHHH-cCCCCCC
Confidence 67899999966 5888763
No 377
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=20.63 E-value=1.5e+02 Score=21.65 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=28.3
Q ss_pred EEEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCHHHHHHHHHhhcCccc
Q 028944 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEF 133 (201)
Q Consensus 69 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (201)
++-.=.++.|..|......-.+.+++= -+..++++++.++|+-.|
T Consensus 105 Vvwd~Hg~~C~vCl~ia~~a~~~~~~G--------------------ks~~eIR~~ID~kYk~g~ 149 (158)
T PF13798_consen 105 VVWDDHGTRCGVCLDIAVQAVQMYQEG--------------------KSPKEIRQYIDEKYKEGY 149 (158)
T ss_pred eeecccccccHHHHHHHHHHHHHHHcC--------------------CCHHHHHHHHHHHHHhCC
Confidence 333344567888876665544444331 278999999988765444
No 378
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=20.56 E-value=57 Score=24.95 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=18.4
Q ss_pred cCCCCcHHhHHHHHHHHHHhcC
Q 028944 76 SKCGLTQSNYKELNVLYEKYKN 97 (201)
Q Consensus 76 ~~C~~C~~~~~~l~~~~~~~~~ 97 (201)
.-||.|+.++..++++...+..
T Consensus 29 ~~C~~Cr~~~~~~e~~~~~l~~ 50 (215)
T TIGR02451 29 ALCPECRARIAAFEALGGSLLE 50 (215)
T ss_pred HHCHHHHHHHHHHHHHHHHHhh
Confidence 4699999999999998777753
No 379
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=20.48 E-value=1.1e+02 Score=24.70 Aligned_cols=20 Identities=10% Similarity=0.028 Sum_probs=11.4
Q ss_pred cCCCCcHH--hHHHHHHHHHHh
Q 028944 76 SKCGLTQS--NYKELNVLYEKY 95 (201)
Q Consensus 76 ~~C~~C~~--~~~~l~~~~~~~ 95 (201)
+|||-|.. .+..+.+...++
T Consensus 2 ~~CpGCg~~~i~~~~~~a~~~l 23 (287)
T TIGR02177 2 DWCPGCGDFGILSALQRALAEL 23 (287)
T ss_pred CcCCCCCChHHHHHHHHHHHHh
Confidence 69999974 333444444443
No 380
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=20.41 E-value=3.8e+02 Score=22.83 Aligned_cols=10 Identities=20% Similarity=0.796 Sum_probs=5.6
Q ss_pred EEECCCCcEE
Q 028944 172 FLVNKEGKVV 181 (201)
Q Consensus 172 ~lid~~G~i~ 181 (201)
.++|.+|+++
T Consensus 247 ~~vD~~G~~i 256 (440)
T PRK14323 247 LFVDRRGRLF 256 (440)
T ss_pred EEECCCCcEe
Confidence 4556666554
No 381
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=20.34 E-value=2.4e+02 Score=17.75 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=10.1
Q ss_pred ceEEEECCCCcEEEe
Q 028944 169 FTKFLVNKEGKVVER 183 (201)
Q Consensus 169 P~~~lid~~G~i~~~ 183 (201)
...++.||+|.++..
T Consensus 93 ~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 93 RSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEE-TTS-EEEE
T ss_pred EEEEEECCCCCEEEe
Confidence 467899999998753
No 382
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=20.30 E-value=1.2e+02 Score=20.47 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=18.5
Q ss_pred EEEEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEe
Q 028944 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (201)
Q Consensus 70 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~v 105 (201)
-|..|...+++++-.+-.+-.+..+.+.+ +.+|-+
T Consensus 88 ~I~iW~~~~~~dq~gl~~~l~~L~~~~~~-I~~v~~ 122 (124)
T PF08874_consen 88 PIVIWYGDNAYDQLGLRYLLSLLKDKPNR-IYVVNV 122 (124)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhcCCCCe-EEEEeC
Confidence 55566666666665555555544443322 444443
No 383
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=20.23 E-value=1.3e+02 Score=21.73 Aligned_cols=35 Identities=6% Similarity=-0.093 Sum_probs=26.4
Q ss_pred EEeecCCCCcHHhHHHHHHHHHHhcCCCeEEEEeec
Q 028944 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (201)
Q Consensus 72 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~vv~vs~ 107 (201)
+|+..-||.|-.-.+.|.++.++++- .+.+..+.+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~-~i~~~p~~l 37 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGA-TVRYRPILL 37 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCC-eeEEeeeeH
Confidence 45567899999999999999998853 255555544
Done!