Query 028945
Match_columns 201
No_of_seqs 148 out of 879
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 97.8 3.2E-05 1.1E-09 70.6 6.7 66 2-73 270-344 (367)
2 4err_A Autotransporter adhesin 61.5 6.2 0.00021 29.4 3.1 64 31-94 1-78 (90)
3 2zdi_C Prefoldin subunit alpha 18.5 1.2E+02 0.0041 23.1 4.0 20 20-40 76-95 (151)
4 3hhw_K Nucleoprotein; protein 16.6 15 0.00051 34.0 -2.0 9 93-101 85-93 (421)
5 1pj3_A NAD-dependent malic enz 13.0 2.3E+02 0.0077 27.1 5.0 64 26-95 180-251 (564)
6 1gq2_A Malic enzyme; oxidoredu 12.7 2.5E+02 0.0084 26.9 5.1 64 26-95 178-249 (555)
7 1ytz_T Troponin T; muscle, THI 11.7 1.9E+02 0.0064 21.7 3.3 35 33-77 35-69 (107)
8 1o0s_A NAD-ME, NAD-dependent m 11.5 2.6E+02 0.0091 26.9 5.0 64 26-95 216-287 (605)
9 1qv9_A F420-dependent methylen 10.4 99 0.0034 27.1 1.5 14 147-160 129-142 (283)
10 1vcs_A Vesicle transport throu 10.1 4.1E+02 0.014 19.1 4.6 46 52-101 11-65 (102)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=97.79 E-value=3.2e-05 Score=70.59 Aligned_cols=66 Identities=9% Similarity=0.163 Sum_probs=49.5
Q ss_pred EEeEEEecCCccCCCC---------CcCCCCCCeEEEEECCCccCCCcchhHhhhccChHHHHHHHHHHHHHHHHHhHHh
Q 028945 2 VVPFVHTGMQEVMPIG---------ATFPRIGKTVTVLIGDPIEFDDLVDEEQTKYLSRGKLYDAVASRIGHRLKKLKLQ 72 (201)
Q Consensus 2 VVPVaI~GT~~VlP~G---------~~~PR~gkrVtV~IGePI~~~dL~~~~~~~~~s~~e~~r~ITdrImerI~eL~~q 72 (201)
||||+|. ++++||+. .++.+++ +|.|.||+||+++++ .....+.++..+.+++.|++.|.+.+.+
T Consensus 270 IvPvaI~-t~~imppp~~ve~~~g~~r~i~~~-~V~v~ig~pI~~~~l----~~~~e~~~e~~~~l~e~v~~~I~~~y~~ 343 (367)
T 1iuq_A 270 LFPLALL-CHDIMPPPSQVEIEIGEKRVIAFN-GAGLSVAPEISFEEI----AATHKNPEEVREAYSKALFDSVAMQYNV 343 (367)
T ss_dssp EEEEEEE-CGGGSCCC----------CCCCCB-CCEEEECCCCCHHHH----HHTSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEE-eccccCCcccccccccccceeecc-cEEEEECCccchhhc----cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999 77999874 2344555 499999999999886 2222334566778999999999988755
Q ss_pred h
Q 028945 73 V 73 (201)
Q Consensus 73 ~ 73 (201)
.
T Consensus 344 l 344 (367)
T 1iuq_A 344 L 344 (367)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=61.52 E-value=6.2 Score=29.39 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=39.7
Q ss_pred ECCCccCCCcchhHhhhccChHHHHHHHHHHHHH-----------HHHHhHHhhhhhhccCCchHHHHH---HHhhhc
Q 028945 31 IGDPIEFDDLVDEEQTKYLSRGKLYDAVASRIGH-----------RLKKLKLQVDRLALEQPSAECVAD---ILHMVD 94 (201)
Q Consensus 31 IGePI~~~dL~~~~~~~~~s~~e~~r~ITdrIme-----------rI~eL~~q~~~l~~eq~~~~~~~~---~~~~vd 94 (201)
.|+|+...+|.++..-..+..++-|+.|.+.+.+ ++..|..+.+.+-.+.+.+.|..- +++|||
T Consensus 1 ~~~l~t~~EL~~aA~V~gK~~G~SYq~iid~l~eyh~~~~~~~~e~l~~L~~kie~Yl~~hPdS~Rv~al~qlldQv~ 78 (90)
T 4err_A 1 MGQIFTVQELKERAKVFAKPIGASYQGILDQLDLVHQAKGRDQIAASFELNKKINDYIAEHPTSGRNQALTQLKEQVT 78 (90)
T ss_dssp -CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 3777777777654333333345556666655554 555667787777777776666554 678887
No 3
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=18.53 E-value=1.2e+02 Score=23.09 Aligned_cols=20 Identities=10% Similarity=0.115 Sum_probs=14.6
Q ss_pred CCCCCCeEEEEECCCccCCCc
Q 028945 20 FPRIGKTVTVLIGDPIEFDDL 40 (201)
Q Consensus 20 ~PR~gkrVtV~IGePI~~~dL 40 (201)
++... +|.|.+|..+.++.-
T Consensus 76 i~~~~-~V~v~lG~g~~vE~~ 95 (151)
T 2zdi_C 76 IVDKN-NAIVSVGSGYAVERS 95 (151)
T ss_dssp CSCTT-EEEEEEETTEEEEEE
T ss_pred ECCCC-EEEEEeCCCeEEEec
Confidence 44433 599999999988753
No 4
>3hhw_K Nucleoprotein; protein complex, template, replication, negative strand RNA chaperone, phosphoprotein, RNA replication, virion; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} SCOP: a.260.1.1 PDB: 2qvj_A* 3ptx_A 3hhz_K 3pto_A 3pu0_A 3pu1_A 3pu4_A 2gic_A 2wyy_A 3pmk_A
Probab=16.65 E-value=15 Score=33.96 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=7.5
Q ss_pred hcccccccc
Q 028945 93 VDQESLGLQ 101 (201)
Q Consensus 93 vd~~~~g~~ 101 (201)
-||+|||.-
T Consensus 85 ~dW~SfGV~ 93 (421)
T 3hhw_K 85 KDWSSFGIN 93 (421)
T ss_dssp SCEEETTEE
T ss_pred CCccCcCEE
Confidence 599999973
No 5
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=13.01 E-value=2.3e+02 Score=27.14 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=48.2
Q ss_pred eEEEEEC--------CCccCCCcchhHhhhccChHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchHHHHHHHhhhcc
Q 028945 26 TVTVLIG--------DPIEFDDLVDEEQTKYLSRGKLYDAVASRIGHRLKKLKLQVDRLALEQPSAECVADILHMVDQ 95 (201)
Q Consensus 26 rVtV~IG--------ePI~~~dL~~~~~~~~~s~~e~~r~ITdrImerI~eL~~q~~~l~~eq~~~~~~~~~~~~vd~ 95 (201)
.|.+.+| +|+++-- +-+. -+.+.|.++.+++++.++...+..-.++.|+=...+|-.|++..-.
T Consensus 180 PI~lDvgTnn~~LL~DPlYlG~-----r~~R-v~g~eYd~fvdefv~av~~~fG~~~~I~~EDf~~~~af~il~ryr~ 251 (564)
T 1pj3_A 180 PVCIDVGTDNIALLKDPFYMGL-----YQKR-DRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYRE 251 (564)
T ss_dssp EEEEESCCCCTTGGGCTTCCSC-----SSCC-CCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTT
T ss_pred eeEeecCcCchhhccCCcccCc-----CCCC-CchhhHHHHHHHHHHHHHHHcCCCcEEeehhcCCccHHHHHHHhcc
Confidence 4778887 8888642 1222 2478999999999999998776666678888888888888877653
No 6
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=12.70 E-value=2.5e+02 Score=26.85 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=48.1
Q ss_pred eEEEEEC--------CCccCCCcchhHhhhccChHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchHHHHHHHhhhcc
Q 028945 26 TVTVLIG--------DPIEFDDLVDEEQTKYLSRGKLYDAVASRIGHRLKKLKLQVDRLALEQPSAECVADILHMVDQ 95 (201)
Q Consensus 26 rVtV~IG--------ePI~~~dL~~~~~~~~~s~~e~~r~ITdrImerI~eL~~q~~~l~~eq~~~~~~~~~~~~vd~ 95 (201)
.|.+.+| +|+++-- +-+. -+.+.|+++.+++++.+....+..-.++.|+=...+|-.|++..-.
T Consensus 178 PI~LD~GTnn~~LL~DplYlG~-----r~~R-v~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~~~af~il~ryr~ 249 (555)
T 1gq2_A 178 PVMLDVGTDNETLLKDPLYIGL-----RHKR-IRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRN 249 (555)
T ss_dssp EEEEESCCCCHHHHHCTTCCSC-----SSCC-CCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTT
T ss_pred eeEeecCCCchhhcCCCccCCc-----CCCC-CchHHHHHHHHHHHHHHHHhhCCCcEEeecccCCccHHHHHHHHhc
Confidence 4778887 8888742 1222 2478999999999999988776656678888888888888877654
No 7
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=11.69 E-value=1.9e+02 Score=21.66 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=23.8
Q ss_pred CCccCCCcchhHhhhccChHHHHHHHHHHHHHHHHHhHHhhhhhh
Q 028945 33 DPIEFDDLVDEEQTKYLSRGKLYDAVASRIGHRLKKLKLQVDRLA 77 (201)
Q Consensus 33 ePI~~~dL~~~~~~~~~s~~e~~r~ITdrImerI~eL~~q~~~l~ 77 (201)
+|++++.+ + .+.++++..++-+.|..|-.+.+++-
T Consensus 35 ~pL~id~l---------~-~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 35 KPLNIDHL---------N-EDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCCCCSSS---------C-SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCC---------C-HHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 67777765 1 23467777888888887777766653
No 8
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=11.53 E-value=2.6e+02 Score=26.94 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=48.5
Q ss_pred eEEEEEC--------CCccCCCcchhHhhhccChHHHHHHHHHHHHHHHHHhHHhhhhhhccCCchHHHHHHHhhhcc
Q 028945 26 TVTVLIG--------DPIEFDDLVDEEQTKYLSRGKLYDAVASRIGHRLKKLKLQVDRLALEQPSAECVADILHMVDQ 95 (201)
Q Consensus 26 rVtV~IG--------ePI~~~dL~~~~~~~~~s~~e~~r~ITdrImerI~eL~~q~~~l~~eq~~~~~~~~~~~~vd~ 95 (201)
.|.+.+| +|+++-- +-+. -+.+.|.++.+++++.++...+..-.++.|+=...+|-.|++..-.
T Consensus 216 PI~LDvGTnne~LL~DPlYlG~-----r~~R-v~g~~Yd~fvdefv~av~~~fGp~~~I~~EDf~~p~af~il~ryr~ 287 (605)
T 1o0s_A 216 PVLLDVGTNNMDLLNDPFYIGL-----RHKR-VRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQD 287 (605)
T ss_dssp EEEEESCCCCHHHHHCTTCCSC-----SSCC-CCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTT
T ss_pred eeEeccCCChhhhccCCcccCc-----CCCC-CChHHHHHHHHHHHHHHHHHhCCCcEeeHhhcCCccHHHHHHHhcc
Confidence 4778887 8888742 1222 2478999999999999999776666678888888888888877654
No 9
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=10.42 E-value=99 Score=27.06 Aligned_cols=14 Identities=36% Similarity=0.774 Sum_probs=12.4
Q ss_pred hhcCChhhHhhhhh
Q 028945 147 RGYMDPTELMGFAA 160 (201)
Q Consensus 147 ~~~~d~~e~~~faa 160 (201)
|.|.||+||..|=+
T Consensus 129 REFLDP~EMa~fNa 142 (283)
T 1qv9_A 129 REFLDPVEMAIYNA 142 (283)
T ss_dssp TTTCCHHHHHHHHH
T ss_pred hhccCHHHHHHhhh
Confidence 89999999999954
No 10
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=10.13 E-value=4.1e+02 Score=19.06 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccCC---------chHHHHHHHhhhcccccccc
Q 028945 52 GKLYDAVASRIGHRLKKLKLQVDRLALEQP---------SAECVADILHMVDQESLGLQ 101 (201)
Q Consensus 52 ~e~~r~ITdrImerI~eL~~q~~~l~~eq~---------~~~~~~~~~~~vd~~~~g~~ 101 (201)
...+..++..|...|..+.. +.+|+. .-+-|.+|++|.|-|...+.
T Consensus 11 E~df~~l~~~i~~kl~~i~~----~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p 65 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPR----LPPDEKKQMVANVEKQLEEARELLEQMDLEVREIP 65 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGG----SCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhhc----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45688888889888887643 233332 44667789999999988874
Done!