RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 028945
         (201 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 33.4 bits (76), Expect = 0.012
 Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 7/76 (9%)

Query: 2   VVPFVHTGMQEVMPIGATFPRIGK-------TVTVLIGDPIEFDDLVDEEQTKYLSRGKL 54
           + P        + P       IG+          + +   I F+++    +     R   
Sbjct: 270 LFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAY 329

Query: 55  YDAVASRIGHRLKKLK 70
             A+   +  +   LK
Sbjct: 330 SKALFDSVAMQYNVLK 345


>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein
          3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
          Length = 60

 Score = 26.3 bits (58), Expect = 0.70
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)

Query: 67 KKLKLQVDRLALEQPSAECVADILHMVDQE 96
          K LK+ +       P  EC+ D+L  VD +
Sbjct: 7  KDLKIDIK----TSPPPECINDLLQAVDSQ 32


>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 27.1 bits (60), Expect = 0.82
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 12/51 (23%)

Query: 41 VDEEQTKYLSRGKLYDAVASRIGHRLKKLKLQVDRLAL--EQPSAECVADI 89
          V+++   Y          A  +G +++ L + VD + L  E   ++ + D+
Sbjct: 16 VNKQTKDY----------AESVGRKVRDLGMVVDLIFLNTEVSLSQALEDV 56


>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium
           parvum [TaxId: 5807]}
          Length = 115

 Score = 25.6 bits (56), Expect = 2.1
 Identities = 5/48 (10%), Positives = 12/48 (25%)

Query: 1   MVVPFVHTGMQEVMPIGATFPRIGKTVTVLIGDPIEFDDLVDEEQTKY 48
              P+V    +  +       R      +   D       + E + + 
Sbjct: 66  KNTPYVFVRSKVALGRACGVSRPVIAAAITSKDGSSLSSQITELKDQI 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 736,205
Number of extensions: 32020
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 7
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)