BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028946
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana
GN=NFYA9 PE=2 SV=1
Length = 303
Score = 114 bits (284), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 76/130 (58%), Gaps = 32/130 (24%)
Query: 1 MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
M +RMPLP EM +EPV+VNAKQY+ ILRRRQ+RAKAELEKK+IK+RK
Sbjct: 152 MPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRK------------ 199
Query: 61 YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNS 119
PYLHESRHQHAMRR RG GGRF KK N A+ AE+ N
Sbjct: 200 -----------------PYLHESRHQHAMRRPRGTGGRF--AKKTNTEASKRKAEEKSNG 240
Query: 120 GADSSKGSTN 129
S S+N
Sbjct: 241 HVTQSPSSSN 250
>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana
GN=NFYA7 PE=2 SV=1
Length = 190
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 78/133 (58%), Gaps = 31/133 (23%)
Query: 1 MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
+ Q +PLP + EEPV+VNAKQY GILRRRQSRA+ E + KVIK+RK
Sbjct: 86 VQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRK------------ 133
Query: 61 YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA--EKGMN 118
PYLHESRH HA+RR RGCGGRFLN KK +++ +S+ EK
Sbjct: 134 -----------------PYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNL 176
Query: 119 SGADSSKGSTNGT 131
S S+ +++GT
Sbjct: 177 SAGKSAMAASSGT 189
>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana
GN=NFYA1 PE=2 SV=1
Length = 272
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 39/135 (28%)
Query: 1 MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
M + R LPL+M +EPVYVNAKQY GILRRR++RAKAELE+KVI+ RK
Sbjct: 158 MPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRK------------ 205
Query: 61 YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSG 120
PYLHESRH+HAMRRAR GGRF ++ E G ++G
Sbjct: 206 -----------------PYLHESRHKHAMRRARASGGRFAKKSEV--------EAGEDAG 240
Query: 121 A-DSSKGS-TNGTGS 133
D +GS TN +GS
Sbjct: 241 GRDRERGSATNSSGS 255
>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana
GN=NFYA4 PE=2 SV=1
Length = 198
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 72/129 (55%), Gaps = 31/129 (24%)
Query: 1 MHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIF 60
M Q +PL + EEPV+VNAKQY GILRRRQSRAK E + IKA+K
Sbjct: 84 MQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKK------------ 131
Query: 61 YNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSG 120
PY+HESRH HA+RR RGCGGRFLN KK +N + E+ S
Sbjct: 132 -----------------PYMHESRHLHAIRRPRGCGGRFLNAKK--ENGDHKEEEEATSD 172
Query: 121 ADSSKGSTN 129
++S+ S++
Sbjct: 173 ENTSEASSS 181
>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana
GN=NFYA5 PE=2 SV=1
Length = 308
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 30/122 (24%)
Query: 4 ARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYN 62
+R+PLP ++E EP++VNAKQY ILRRR+ RAK E + K+IK RK
Sbjct: 166 SRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRK-------------- 211
Query: 63 KTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGAD 122
PYLHESRH HA++RARG GGRFLNTKKL +++ + M +G +
Sbjct: 212 ---------------PYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQN 256
Query: 123 SS 124
S
Sbjct: 257 FS 258
>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana
GN=NFYA8 PE=2 SV=2
Length = 328
Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 62/105 (59%), Gaps = 30/105 (28%)
Query: 4 ARMPLPLEM-EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYN 62
R+PLP ++ E EPV+VNAKQ+ I+RRRQ RAK E + K+IKARK
Sbjct: 160 TRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARK-------------- 205
Query: 63 KTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLND 107
PYLHESRH HA++R RG GGRFLNTKKL +
Sbjct: 206 ---------------PYLHESRHVHALKRPRGSGGRFLNTKKLQE 235
>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana
GN=NFYA3 PE=2 SV=2
Length = 340
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 30/106 (28%)
Query: 1 MHQARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATI 59
M R+PLP E+ E +PV+VNAKQY I+RRRQ RAK E + K+I+ARK
Sbjct: 164 MIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARK----------- 212
Query: 60 FYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKL 105
PYLHESRH HA++R RG GGRFLNTKKL
Sbjct: 213 ------------------PYLHESRHVHALKRPRGSGGRFLNTKKL 240
>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana
GN=NFYA6 PE=2 SV=1
Length = 308
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 30/102 (29%)
Query: 4 ARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYN 62
+RMPLP + E EP++VNAKQY+ ILRRR+ RAK E + K+IK RK
Sbjct: 159 SRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRK-------------- 204
Query: 63 KTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKK 104
PYLHESRH HA++R RG GGRFLNTKK
Sbjct: 205 ---------------PYLHESRHLHALKRVRGSGGRFLNTKK 231
>sp|Q9M9X4|NFYA2_ARATH Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana
GN=NFYA2 PE=2 SV=1
Length = 295
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 79/145 (54%), Gaps = 32/145 (22%)
Query: 3 QARMPLPLEMEEE--PVYVNAKQYRGILRRRQSRAKAE--LEKKVIKARKVTFHSLKGAT 58
Q+R+ LPL ME E +YVN+KQY GI+RRRQSRAKA L++K + +R
Sbjct: 122 QSRVMLPLNMETEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSR----------- 170
Query: 59 IFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLN-DNAANSAEKGM 117
+PY+H SRH HA+RR RG GGRFLNTK N +N+ +A+KG
Sbjct: 171 ----------------CRKPYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNAKKGD 214
Query: 118 NSGADSSKGSTNGTGSVDSSIVQQE 142
S S+ + S +S +V E
Sbjct: 215 GSMQIQSQPKPQQSNSQNSEVVHPE 239
>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana
GN=NFYA10 PE=2 SV=2
Length = 269
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 68/124 (54%), Gaps = 40/124 (32%)
Query: 5 RMPLPLEMEEE---PVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFY 61
R+ +PL+ME E +YVN+KQY GI+RRRQSRAKAE K+ + RK
Sbjct: 121 RVMIPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRK------------- 164
Query: 62 NKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGA 121
PY+H SRH HAMRR RG GGRFLNTK A++A++ S +
Sbjct: 165 ----------------PYMHHSRHLHAMRRPRGSGGRFLNTK-----TADAAKQSKPSNS 203
Query: 122 DSSK 125
SS+
Sbjct: 204 QSSE 207
>sp|P23708|NFYA_MOUSE Nuclear transcription factor Y subunit alpha OS=Mus musculus
GN=Nfya PE=1 SV=2
Length = 346
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 57/102 (55%), Gaps = 31/102 (30%)
Query: 5 RMPLP-LEM-EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYN 62
R+PLP EM EEEP+YVNAKQY IL+RRQ+RAK E E K+ K R+
Sbjct: 250 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERR-------------- 295
Query: 63 KTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKK 104
YLHESRH+HAM R RG GGRF + K+
Sbjct: 296 ---------------KYLHESRHRHAMARKRGEGGRFFSPKE 322
>sp|P23511|NFYA_HUMAN Nuclear transcription factor Y subunit alpha OS=Homo sapiens
GN=NFYA PE=1 SV=2
Length = 347
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 57/102 (55%), Gaps = 31/102 (30%)
Query: 5 RMPLP-LEM-EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYN 62
R+PLP EM EEEP+YVNAKQY IL+RRQ+RAK E E K+ K R+
Sbjct: 251 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERR-------------- 296
Query: 63 KTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKK 104
YLHESRH+HAM R RG GGRF + K+
Sbjct: 297 ---------------KYLHESRHRHAMARKRGEGGRFFSPKE 323
>sp|P18576|NFYA_RAT Nuclear transcription factor Y subunit alpha OS=Rattus norvegicus
GN=Nfya PE=1 SV=1
Length = 341
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 57/102 (55%), Gaps = 31/102 (30%)
Query: 5 RMPLP-LEM-EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYN 62
R+PLP EM EEEP+YVNAKQY IL+RRQ+RAK E E K+ K R+
Sbjct: 245 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERR-------------- 290
Query: 63 KTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKK 104
YLHESRH+HAM R RG GGRF + K+
Sbjct: 291 ---------------KYLHESRHRHAMARKRGEGGRFFSPKE 317
>sp|Q5E9S2|NFYA_BOVIN Nuclear transcription factor Y subunit alpha OS=Bos taurus GN=NFYA
PE=2 SV=1
Length = 341
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 57/102 (55%), Gaps = 31/102 (30%)
Query: 5 RMPLP-LEM-EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYN 62
R+PLP EM EEEP+YVNAKQY IL+RRQ+RAK E E K+ K R+
Sbjct: 245 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERR-------------- 290
Query: 63 KTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKK 104
YLHESRH+HAM R RG GGRF + K+
Sbjct: 291 ---------------KYLHESRHRHAMARKRGEGGRFFSPKE 317
>sp|Q54S29|NFYA_DICDI Nuclear transcription factor Y subunit alpha OS=Dictyostelium
discoideum GN=nfyA PE=3 SV=1
Length = 517
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 49/90 (54%), Gaps = 29/90 (32%)
Query: 11 EMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDT 70
E+ EEP+YVNAKQY IL+RR +RAK E E K+ K RK
Sbjct: 225 EIVEEPLYVNAKQYNRILKRRAARAKLESENKLPKTRKA--------------------- 263
Query: 71 YALFSLQPYLHESRHQHAMRRARGCGGRFL 100
Y HESRHQHA+RR RGCGGRFL
Sbjct: 264 --------YQHESRHQHAIRRQRGCGGRFL 285
>sp|P06774|HAP2_YEAST Transcriptional activator HAP2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP2 PE=1 SV=1
Length = 265
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 35/131 (26%)
Query: 12 MEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTY 71
+ E+P YVNAKQY IL+RR +RAK E + ++ + RK
Sbjct: 156 IAEQPFYVNAKQYYRILKRRYARAKLEEKLRISRERK----------------------- 192
Query: 72 ALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGT 131
PYLHESRH+HAMRR RG GGRFL ++ A K SGA ++
Sbjct: 193 ------PYLHESRHKHAMRRPRGEGGRFLTAAEIK------AMKSKKSGASDDPDDSHED 240
Query: 132 GSVDSSIVQQE 142
+ + I+Q++
Sbjct: 241 KKITTKIIQEQ 251
>sp|P53768|HAP2_KLULA Transcriptional activator HAP2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP2 PE=3 SV=1
Length = 300
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 52/104 (50%), Gaps = 29/104 (27%)
Query: 2 HQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFY 61
H + P E E+P YVNAKQY IL+RR +RAK E K+ + R+
Sbjct: 172 HDMNIISPSEPLEQPFYVNAKQYYRILKRRYARAKLEENLKISRERR------------- 218
Query: 62 NKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKL 105
PYLHESRH+HAMRR RG GGRFL ++
Sbjct: 219 ----------------PYLHESRHKHAMRRPRGQGGRFLTAAEM 246
>sp|P24488|HAP2_SCHPO Transcriptional activator hap2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap2 PE=3 SV=1
Length = 334
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 31/94 (32%)
Query: 15 EPV---YVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTY 71
EPV YVNAKQY IL+RR++RAK LE++ L+G+ T
Sbjct: 5 EPVEGLYVNAKQYHRILKRREARAK--LEER----------------------LRGVQT- 39
Query: 72 ALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKL 105
+ +PYLHESRH+HAMRR RG GGRFL K+
Sbjct: 40 ---TKKPYLHESRHKHAMRRPRGPGGRFLTADKV 70
>sp|Q18F10|AROC_HALWD Chorismate synthase OS=Haloquadratum walsbyi (strain DSM 16790)
GN=aroC PE=3 SV=1
Length = 383
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 12/137 (8%)
Query: 77 QPYLHESRHQHAM--------RRARGCGGRFLNTKKLNDNAANS-AEKGMNSGADSSKGS 127
+PY+ R H R G GGR + +N AA + A+K + +K
Sbjct: 96 EPYVTAPRPSHGDFTYSAKFGTRNWGGGGRSSARETVNWVAAGAIAQKILTEYGIKAKAH 155
Query: 128 TNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNR--SLLSMYNTSSGSVEGNFLGQQR 185
N G + + V E +E E ++ + R + Y T S+ G+ + R
Sbjct: 156 VNQIGDIKAPPVTFEEMLEHTEENEVRCAHPETAERMRERIDEYQTEGDSIGGSIYFEAR 215
Query: 186 GSMQGNGAPR-GALPVK 201
G G GAPR +LP +
Sbjct: 216 GVPAGLGAPRFDSLPAR 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.125 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,253,680
Number of Sequences: 539616
Number of extensions: 2786116
Number of successful extensions: 17666
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 13029
Number of HSP's gapped (non-prelim): 3843
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)