Query 028946
Match_columns 201
No_of_seqs 116 out of 187
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 05:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1561 CCAAT-binding factor, 100.0 3.7E-38 8E-43 279.0 9.1 78 4-110 172-250 (307)
2 smart00521 CBF CCAAT-Binding t 100.0 2.8E-38 6E-43 227.7 5.6 62 12-102 1-62 (62)
3 PF02045 CBFB_NFYA: CCAAT-bind 100.0 1.9E-35 4.1E-40 210.7 4.9 57 14-99 1-58 (58)
4 COG5224 HAP2 CCAAT-binding fac 99.8 1.7E-21 3.7E-26 169.1 3.1 66 13-109 157-222 (248)
5 PF06203 CCT: CCT motif; Inte 73.7 2.4 5.1E-05 29.3 1.7 26 78-104 20-45 (45)
6 PF12254 DNA_pol_alpha_N: DNA 21.2 77 0.0017 23.3 2.0 21 13-33 22-44 (67)
7 KOG1561 CCAAT-binding factor, 20.9 51 0.0011 30.4 1.3 31 73-107 30-60 (307)
8 KOG2796 Uncharacterized conser 20.2 1.2E+02 0.0027 28.8 3.6 28 9-36 279-306 (366)
9 PF15046 DUF4532: Protein of u 16.2 1.9E+02 0.0041 26.9 3.8 22 13-34 131-152 (279)
10 KOG4823 Uncharacterized conser 14.9 77 0.0017 30.0 1.0 21 78-98 141-171 (328)
No 1
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=100.00 E-value=3.7e-38 Score=279.02 Aligned_cols=78 Identities=69% Similarity=1.053 Sum_probs=73.8
Q ss_pred CCCCCCCCCCC-CceeechhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhhhcccccchhhhhcccCCchhh
Q 028946 4 ARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHE 82 (201)
Q Consensus 4 ~r~~LP~~~~e-ePiYVNAKQY~rILrRR~aRAk~E~e~k~~k~Rk~~~~~~~~~t~~~~~~~~gld~~~~~~kqpYLHE 82 (201)
.|+|||.++.| ||||||||||++|||||++|||+|+++||||.|| |||||
T Consensus 172 ~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq~RaKlEa~~klik~Rk-----------------------------pYLHE 222 (307)
T KOG1561|consen 172 DRTPLPQTDSETEPLYVNAKQYHRILRRRQARAKLEATTKLIKARK-----------------------------PYLHE 222 (307)
T ss_pred CcccCCccccCCCceeEcHHHHHHHHHHHHHHhhhhhcccchhhcC-----------------------------ccccc
Confidence 79999999955 9999999999999999999999999999999999 99999
Q ss_pred hhhHHhhhccCCCCCccccccccchhhh
Q 028946 83 SRHQHAMRRARGCGGRFLNTKKLNDNAA 110 (201)
Q Consensus 83 SRHkHAmrR~RG~GGRFLt~ke~~~~~~ 110 (201)
|||+|||||+||+|||||++||..+...
T Consensus 223 SRH~HAmkR~RG~GGRFln~k~~~~~ss 250 (307)
T KOG1561|consen 223 SRHLHAMKRARGEGGRFLNTKEYHDDSS 250 (307)
T ss_pred hhhHHHhhcccCCCCCCCchhhhhhhcc
Confidence 9999999999999999999999776554
No 2
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=100.00 E-value=2.8e-38 Score=227.70 Aligned_cols=62 Identities=77% Similarity=1.142 Sum_probs=60.0
Q ss_pred CCCCceeechhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhhhcccccchhhhhcccCCchhhhhhHHhhhc
Q 028946 12 MEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRR 91 (201)
Q Consensus 12 ~~eePiYVNAKQY~rILrRR~aRAk~E~e~k~~k~Rk~~~~~~~~~t~~~~~~~~gld~~~~~~kqpYLHESRHkHAmrR 91 (201)
++++|||||||||++|||||++|||+|+++++++.|| ||||||||+|||+|
T Consensus 1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rk-----------------------------pYlhESRH~HAm~R 51 (62)
T smart00521 1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERK-----------------------------PYLHESRHLHAMRR 51 (62)
T ss_pred CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccC-----------------------------CcccchhHHHHHcc
Confidence 5789999999999999999999999999999999988 99999999999999
Q ss_pred cCCCCCccccc
Q 028946 92 ARGCGGRFLNT 102 (201)
Q Consensus 92 ~RG~GGRFLt~ 102 (201)
+||+||||||+
T Consensus 52 ~Rg~gGRFl~~ 62 (62)
T smart00521 52 PRGSGGRFLNT 62 (62)
T ss_pred CcCCCCCCCCC
Confidence 99999999985
No 3
>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1.9e-35 Score=210.67 Aligned_cols=57 Identities=77% Similarity=1.171 Sum_probs=55.5
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHHHHH-HHhhhhhhcccccchhhhhcccccchhhhhcccCCchhhhhhHHhhhcc
Q 028946 14 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA 92 (201)
Q Consensus 14 eePiYVNAKQY~rILrRR~aRAk~E~e~k~-~k~Rk~~~~~~~~~t~~~~~~~~gld~~~~~~kqpYLHESRHkHAmrR~ 92 (201)
|+|||||||||++|||||++|||+|+++++ ++.|| ||||||||+|||+|+
T Consensus 1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk-----------------------------~YlheSRH~HA~~R~ 51 (58)
T PF02045_consen 1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRK-----------------------------PYLHESRHKHAMRRP 51 (58)
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhH-----------------------------HHHHHHHHHHHHcCc
Confidence 689999999999999999999999999999 88888 999999999999999
Q ss_pred CCCCCcc
Q 028946 93 RGCGGRF 99 (201)
Q Consensus 93 RG~GGRF 99 (201)
||+||||
T Consensus 52 Rg~gGRF 58 (58)
T PF02045_consen 52 RGPGGRF 58 (58)
T ss_pred cCCCCCC
Confidence 9999999
No 4
>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]
Probab=99.83 E-value=1.7e-21 Score=169.11 Aligned_cols=66 Identities=42% Similarity=0.540 Sum_probs=59.1
Q ss_pred CCCceeechhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhhhcccccchhhhhcccCCchhhhhhHHhhhcc
Q 028946 13 EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA 92 (201)
Q Consensus 13 ~eePiYVNAKQY~rILrRR~aRAk~E~e~k~~k~Rk~~~~~~~~~t~~~~~~~~gld~~~~~~kqpYLHESRHkHAmrR~ 92 (201)
.++|+|||||||++|+|||-+|++++. +++-.|. .|||||||+|||+|+
T Consensus 157 sfqp~Yvnakq~n~i~kr~~~r~~ld~--~~~~~r~-----------------------------~ylHesrhkham~r~ 205 (248)
T COG5224 157 SFQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRA-----------------------------FYLHESRHKHAMLRV 205 (248)
T ss_pred ccCcchhhhhhhhHHhcchhHHHHHHH--Hhhhhhh-----------------------------hccccchhhhhhhcc
Confidence 578999999999999999999999875 4556666 799999999999999
Q ss_pred CCCCCccccccccchhh
Q 028946 93 RGCGGRFLNTKKLNDNA 109 (201)
Q Consensus 93 RG~GGRFLt~ke~~~~~ 109 (201)
|+|+|||||+.|++...
T Consensus 206 r~ptgrfLtasEi~~ln 222 (248)
T COG5224 206 RDPTGRFLTASEIDPLN 222 (248)
T ss_pred cCCCcceecHHhhhhhh
Confidence 99999999999987654
No 5
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=73.66 E-value=2.4 Score=29.30 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.6
Q ss_pred CchhhhhhHHhhhccCCCCCccccccc
Q 028946 78 PYLHESRHQHAMRRARGCGGRFLNTKK 104 (201)
Q Consensus 78 pYLHESRHkHAmrR~RG~GGRFLt~ke 104 (201)
.-.+++|..=|..|+|-. |||++.+|
T Consensus 20 kirY~~Rk~~A~~R~Rvk-GRFvk~~e 45 (45)
T PF06203_consen 20 KIRYESRKAVADKRPRVK-GRFVKKSE 45 (45)
T ss_pred cCCcchHHHHHhhCCccC-CcccCCCC
Confidence 567899999999999976 99998654
No 6
>PF12254 DNA_pol_alpha_N: DNA polymerase alpha subunit p180 N terminal; InterPro: IPR024647 This entry represents the N-terminal domain of DNA polymerase alpha catalytic subunit (the DNA polymerase alpha complex is composed of four subunits). This domain is approximately 70 amino acids in length and it contains a specific labile site [].
Probab=21.22 E-value=77 Score=23.34 Aligned_cols=21 Identities=43% Similarity=0.892 Sum_probs=17.6
Q ss_pred CCCcee--echhhhHHHHHHHHH
Q 028946 13 EEEPVY--VNAKQYRGILRRRQS 33 (201)
Q Consensus 13 ~eePiY--VNAKQY~rILrRR~a 33 (201)
+.++|| |...+|..|.+.|..
T Consensus 22 e~~~IYdeVdE~eY~~~v~~R~~ 44 (67)
T PF12254_consen 22 EEEDIYDEVDEEEYRKLVRKRLQ 44 (67)
T ss_pred cccccceeeCHHHHHHHHHHHHh
Confidence 567898 999999999988743
No 7
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=20.92 E-value=51 Score=30.41 Aligned_cols=31 Identities=48% Similarity=0.875 Sum_probs=24.5
Q ss_pred hcccCCchhhhhhHHhhhccCCCCCccccccccch
Q 028946 73 LFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLND 107 (201)
Q Consensus 73 ~~~kqpYLHESRHkHAmrR~RG~GGRFLt~ke~~~ 107 (201)
....+||++|+.|+|.| +.+++|++..+...
T Consensus 30 ~~~~~p~~~~s~~~~q~----~~s~~~~s~~g~~~ 60 (307)
T KOG1561|consen 30 QTTKKPYLHESGHKHQM----GPGGRFLSADGVSK 60 (307)
T ss_pred ccccccccCcccccccc----cccccccCcccccc
Confidence 34567999999999999 89999998444333
No 8
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.18 E-value=1.2e+02 Score=28.84 Aligned_cols=28 Identities=14% Similarity=-0.101 Sum_probs=19.5
Q ss_pred CCCCCCCceeechhhhHHHHHHHHHHHH
Q 028946 9 PLEMEEEPVYVNAKQYRGILRRRQSRAK 36 (201)
Q Consensus 9 P~~~~eePiYVNAKQY~rILrRR~aRAk 36 (201)
|.-.+.-|+|||-|-.--+--+|..-|-
T Consensus 279 ~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 279 LRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred cccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 3334678999999987666666666553
No 9
>PF15046 DUF4532: Protein of unknown function (DUF4532)
Probab=16.19 E-value=1.9e+02 Score=26.89 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=17.4
Q ss_pred CCCceeechhhhHHHHHHHHHH
Q 028946 13 EEEPVYVNAKQYRGILRRRQSR 34 (201)
Q Consensus 13 ~eePiYVNAKQY~rILrRR~aR 34 (201)
...||||++++=+.+|-|=++.
T Consensus 131 ~~~pif~D~~rK~qvI~rt~KE 152 (279)
T PF15046_consen 131 SCTPIFVDPNRKNQVILRTVKE 152 (279)
T ss_pred hcccceechhhhhHHHHHHHHH
Confidence 5689999999998888765443
No 10
>KOG4823 consensus Uncharacterized conserved protein [Function unknown]
Probab=14.93 E-value=77 Score=29.95 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=15.3
Q ss_pred CchhhhhhHHh----------hhccCCCCCc
Q 028946 78 PYLHESRHQHA----------MRRARGCGGR 98 (201)
Q Consensus 78 pYLHESRHkHA----------mrR~RG~GGR 98 (201)
--|||+||+|+ .++.|=+.|+
T Consensus 141 ~~lhenRdkht~r~~~ssVlr~r~lri~eg~ 171 (328)
T KOG4823|consen 141 VVLHENRDKHTQRITESSVLRKRRLRISEGE 171 (328)
T ss_pred hhhhhccchhhhhhhHHHHhhhhcccCCcCC
Confidence 56899999999 4455555555
Done!