Query 028946
Match_columns 201
No_of_seqs 116 out of 187
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 07:46:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 4.2E-38 1.4E-42 226.8 3.7 62 14-104 2-64 (64)
2 2xc7_A Phosphorylated adapter 7.7 37 0.0013 25.8 -2.0 15 89-103 60-74 (104)
3 2k2w_A Recombination and DNA r 7.7 1.2E+02 0.004 23.7 0.7 14 13-26 16-29 (118)
4 3or1_A Sulfite reductase alpha 7.7 95 0.0033 28.3 0.3 29 85-114 96-124 (437)
5 3mm5_A Sulfite reductase, diss 7.5 97 0.0033 27.9 0.3 25 90-114 98-122 (418)
6 3q12_A Pantoate--beta-alanine 7.4 1.1E+02 0.0037 26.8 0.4 10 16-25 57-66 (287)
7 3mxt_A Pantothenate synthetase 7.2 1.1E+02 0.0037 26.8 0.4 9 16-24 56-64 (285)
8 2w4s_A Ankyrin-repeat protein; 7.0 43 0.0015 25.8 -2.0 13 90-102 60-72 (113)
9 3n8h_A Pantothenate synthetase 7.0 1.1E+02 0.0039 26.5 0.4 10 16-25 56-65 (264)
10 3h4o_A Nitroreductase family p 5.9 1.4E+02 0.0047 22.8 0.3 19 13-31 11-29 (191)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=4.2e-38 Score=226.85 Aligned_cols=62 Identities=61% Similarity=1.011 Sum_probs=57.0
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhhcccccchhhhhcccccchhhhhcccCCchhhhhhHHhhhcc
Q 028946 14 EEPVYVNAKQYRGILRRRQSRAKAELEKKVI-KARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA 92 (201)
Q Consensus 14 eePiYVNAKQY~rILrRR~aRAk~E~e~k~~-k~Rk~~~~~~~~~t~~~~~~~~gld~~~~~~kqpYLHESRHkHAmrR~ 92 (201)
|+|||||||||++||+||++|||+|++++++ +.|| ||||||||+|||+|+
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk-----------------------------~YlhESRH~HAm~R~ 52 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRK-----------------------------PYLHESRHNHAMRRP 52 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCC-----------------------------SCSCHHHHHHHHHSC
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCccccccc-----------------------------CcchhHHHHHHhcCC
Confidence 7999999999999999999999999999874 5666 999999999999999
Q ss_pred CCCCCccccccc
Q 028946 93 RGCGGRFLNTKK 104 (201)
Q Consensus 93 RG~GGRFLt~ke 104 (201)
||+||||||++|
T Consensus 53 Rg~gGRFl~~~e 64 (64)
T 4g92_A 53 RGPGGRFLTADE 64 (64)
T ss_dssp BCTTSCBCCCC-
T ss_pred cCCCCccccCCC
Confidence 999999999986
No 2
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=7.67 E-value=37 Score=25.76 Aligned_cols=15 Identities=47% Similarity=0.523 Sum_probs=12.4
Q ss_pred hhccCCCCCcccccc
Q 028946 89 MRRARGCGGRFLNTK 103 (201)
Q Consensus 89 mrR~RG~GGRFLt~k 103 (201)
-.|.|-|||-||+-=
T Consensus 60 G~RrRTpGGVF~~Ll 74 (104)
T 2xc7_A 60 GSRRRTPGGVFLNLL 74 (104)
T ss_dssp SSSCCCHHHHHHHHH
T ss_pred CCcCCCCchhHHHHH
Confidence 468999999999753
No 3
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=7.66 E-value=1.2e+02 Score=23.71 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=10.7
Q ss_pred CCCceeechhhhHH
Q 028946 13 EEEPVYVNAKQYRG 26 (201)
Q Consensus 13 ~eePiYVNAKQY~r 26 (201)
..-=||.|+|||.+
T Consensus 16 GKtFvFLn~KQ~kk 29 (118)
T 2k2w_A 16 DKVFLFLNAKQYKK 29 (118)
T ss_dssp TCEEEESCSSTHHH
T ss_pred CCEEEEeCHHHHHH
Confidence 34568899999975
No 4
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=7.65 E-value=95 Score=28.34 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=21.7
Q ss_pred hHHhhhccCCCCCccccccccchhhhhhhh
Q 028946 85 HQHAMRRARGCGGRFLNTKKLNDNAANSAE 114 (201)
Q Consensus 85 HkHAmrR~RG~GGRFLt~ke~~~~~~~~~~ 114 (201)
|.|+ =|.|-|+|||||++.+..-+.-...
T Consensus 96 ~~~t-VRV~~P~Gr~lTaeqLR~LadIAek 124 (437)
T 3or1_A 96 HFHT-VRLAQPAAKYYTAEYLEAICDVWDL 124 (437)
T ss_dssp BCCE-EEECCCGGGEEEHHHHHHHHHHHHH
T ss_pred eEEE-EEEeCCCCCccCHHHHHHHHHHHHH
Confidence 4454 5789999999999998876654433
No 5
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=7.54 E-value=97 Score=27.87 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=19.9
Q ss_pred hccCCCCCccccccccchhhhhhhh
Q 028946 90 RRARGCGGRFLNTKKLNDNAANSAE 114 (201)
Q Consensus 90 rR~RG~GGRFLt~ke~~~~~~~~~~ 114 (201)
=|.+-|+|||||++.+..-+.-...
T Consensus 98 vRv~~P~Gr~lt~~qLr~LadIAek 122 (418)
T 3mm5_A 98 MRINQPSGWFYSTKALRGLCDVWEK 122 (418)
T ss_dssp EEECCCGGGEEEHHHHHHHHHHHHH
T ss_pred EEEeCCCCcccCHHHHHHHHHHHHH
Confidence 5799999999999998876654433
No 6
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=7.38 E-value=1.1e+02 Score=26.85 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=8.1
Q ss_pred ceeechhhhH
Q 028946 16 PVYVNAKQYR 25 (201)
Q Consensus 16 PiYVNAKQY~ 25 (201)
-||||+-||.
T Consensus 57 SIFVNP~QF~ 66 (287)
T 3q12_A 57 TIFVNPLQFE 66 (287)
T ss_dssp EECCCGGGCS
T ss_pred EeccCcccCC
Confidence 5899999953
No 7
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=7.23 E-value=1.1e+02 Score=26.79 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=7.4
Q ss_pred ceeechhhh
Q 028946 16 PVYVNAKQY 24 (201)
Q Consensus 16 PiYVNAKQY 24 (201)
-||||+-||
T Consensus 56 SIFVNP~QF 64 (285)
T 3mxt_A 56 SIFVNPMQF 64 (285)
T ss_dssp EECCCGGGC
T ss_pred EeccCcccc
Confidence 489999994
No 8
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A {Cryptosporidium parvum}
Probab=7.03 E-value=43 Score=25.84 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=11.5
Q ss_pred hccCCCCCccccc
Q 028946 90 RRARGCGGRFLNT 102 (201)
Q Consensus 90 rR~RG~GGRFLt~ 102 (201)
.|.|-|||-||+-
T Consensus 60 sRrRTpGGVF~~L 72 (113)
T 2w4s_A 60 SRRKTIGGVFCYL 72 (113)
T ss_dssp SSBCCHHHHHHHH
T ss_pred CccccCCcchhHH
Confidence 6899999999974
No 9
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=7.02 E-value=1.1e+02 Score=26.52 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=8.1
Q ss_pred ceeechhhhH
Q 028946 16 PVYVNAKQYR 25 (201)
Q Consensus 16 PiYVNAKQY~ 25 (201)
-||||+-||.
T Consensus 56 SIFVNP~QF~ 65 (264)
T 3n8h_A 56 SIFVNPTQFN 65 (264)
T ss_dssp EECCCGGGCS
T ss_pred EEccCcccCC
Confidence 4899999964
No 10
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=5.87 E-value=1.4e+02 Score=22.82 Aligned_cols=19 Identities=16% Similarity=0.487 Sum_probs=7.4
Q ss_pred CCCceeechhhhHHHHHHH
Q 028946 13 EEEPVYVNAKQYRGILRRR 31 (201)
Q Consensus 13 ~eePiYVNAKQY~rILrRR 31 (201)
.-||+||+..++...|+.|
T Consensus 11 ~~~~~~~~~~~~~~~i~~R 29 (191)
T 3h4o_A 11 HHENLYFQGMNFVELAKKR 29 (191)
T ss_dssp ---------CCHHHHHHHC
T ss_pred chhhhhcCHHHHHHHHHhC
Confidence 4589999999987776655
Done!