Query 028946
Match_columns 201
No_of_seqs 116 out of 187
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 07:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028946.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028946hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8fa_ c.26.1.4 (A:) Pantothe 15.0 17 0.0012 29.2 0.1 9 16-24 49-57 (276)
2 d1ihoa_ c.26.1.4 (A:) Pantothe 11.7 24 0.0018 28.3 0.1 10 16-25 54-63 (282)
3 d2a84a1 c.26.1.4 (A:3-288) Pan 9.6 27 0.002 28.0 -0.3 11 16-26 63-73 (286)
4 d1e0na_ b.72.1.1 (A:) Hypothet 7.0 61 0.0044 18.3 0.6 11 13-23 9-19 (27)
5 d1z60a1 g.49.1.2 (A:328-386) T 5.0 71 0.0052 20.7 0.0 9 78-86 46-54 (59)
6 d1aopa1 d.58.36.1 (A:81-145) S 5.0 54 0.0039 20.3 -0.6 23 89-112 1-23 (65)
7 d1nf9a_ c.33.1.3 (A:) Phenazin 4.7 44 0.0032 24.2 -1.4 24 82-105 182-205 (207)
8 d1alla_ a.1.1.3 (A:) Allophyco 3.2 1.1E+02 0.008 22.1 -0.2 14 96-109 13-26 (160)
9 d2jmfa1 b.72.1.1 (A:521-553) U 3.2 2.5E+02 0.018 15.5 1.5 9 13-21 14-22 (33)
10 d1hh1a_ c.52.1.18 (A:) Archaea 2.9 3E+02 0.022 19.7 2.0 17 14-30 55-71 (132)
No 1
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=14.97 E-value=17 Score=29.19 Aligned_cols=9 Identities=44% Similarity=0.818 Sum_probs=7.4
Q ss_pred ceeechhhh
Q 028946 16 PVYVNAKQY 24 (201)
Q Consensus 16 PiYVNAKQY 24 (201)
.||||+.||
T Consensus 49 SIFVNP~QF 57 (276)
T d1v8fa_ 49 SVFVNPLQF 57 (276)
T ss_dssp EECCCGGGC
T ss_pred EEEecCccC
Confidence 589999994
No 2
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=11.71 E-value=24 Score=28.31 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=8.2
Q ss_pred ceeechhhhH
Q 028946 16 PVYVNAKQYR 25 (201)
Q Consensus 16 PiYVNAKQY~ 25 (201)
.|||||.||.
T Consensus 54 SIFVNP~QF~ 63 (282)
T d1ihoa_ 54 SIFVNPMQFD 63 (282)
T ss_dssp EECCCGGGCS
T ss_pred EEEecCccCc
Confidence 5899999864
No 3
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.61 E-value=27 Score=28.01 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=8.6
Q ss_pred ceeechhhhHH
Q 028946 16 PVYVNAKQYRG 26 (201)
Q Consensus 16 PiYVNAKQY~r 26 (201)
.||||+.||.-
T Consensus 63 SIFVNP~QF~~ 73 (286)
T d2a84a1 63 SIFVNPMQFGA 73 (286)
T ss_dssp EECCCCCCTTC
T ss_pred EEeecccccCc
Confidence 58999999653
No 4
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.04 E-value=61 Score=18.35 Aligned_cols=11 Identities=45% Similarity=0.809 Sum_probs=8.6
Q ss_pred CCCceeechhh
Q 028946 13 EEEPVYVNAKQ 23 (201)
Q Consensus 13 ~eePiYVNAKQ 23 (201)
...|+|.||.+
T Consensus 9 ngrpmyynaq~ 19 (27)
T d1e0na_ 9 NGRPLYYNAEQ 19 (27)
T ss_dssp SSSEEEEETTT
T ss_pred CCceeeeehhh
Confidence 35799999964
No 5
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.98 E-value=71 Score=20.71 Aligned_cols=9 Identities=33% Similarity=0.741 Sum_probs=6.7
Q ss_pred CchhhhhhH
Q 028946 78 PYLHESRHQ 86 (201)
Q Consensus 78 pYLHESRHk 86 (201)
-|+||+-|.
T Consensus 46 ~fiHe~lh~ 54 (59)
T d1z60a1 46 VFVHDSLHS 54 (59)
T ss_dssp HTTTTTSCS
T ss_pred hhhhhhhcC
Confidence 478888874
No 6
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=4.97 E-value=54 Score=20.31 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=15.8
Q ss_pred hhccCCCCCccccccccchhhhhh
Q 028946 89 MRRARGCGGRFLNTKKLNDNAANS 112 (201)
Q Consensus 89 mrR~RG~GGRFLt~ke~~~~~~~~ 112 (201)
|=|.|=|||++ |.+.+..-+.-+
T Consensus 1 MiRiriPgG~i-t~~ql~~la~ia 23 (65)
T d1aopa1 1 LLRCRLPGGVI-TTKQWQAIDKFA 23 (65)
T ss_dssp CEECCCGGGEE-EHHHHHHHHHHH
T ss_pred CEEEecCCCCc-CHHHHHHHHHHH
Confidence 56889999986 666666554433
No 7
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.73 E-value=44 Score=24.23 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=17.9
Q ss_pred hhhhHHhhhccCCCCCcccccccc
Q 028946 82 ESRHQHAMRRARGCGGRFLNTKKL 105 (201)
Q Consensus 82 ESRHkHAmrR~RG~GGRFLt~ke~ 105 (201)
+..|.+||.+...-+|..++++++
T Consensus 182 ~e~h~~~l~~~~~~~a~V~t~~ev 205 (207)
T d1nf9a_ 182 EAHHRMALEYAASRCAMVVTTDEV 205 (207)
T ss_dssp HHHHHHHHHHHHHHTCEEECHHHH
T ss_pred HHHHHHHHHHHHhCCCEEeEHHHh
Confidence 567888888877777877777664
No 8
>d1alla_ a.1.1.3 (A:) Allophycocyanin alpha subunit {Spirulina platensis [TaxId: 118562]}
Probab=3.23 E-value=1.1e+02 Score=22.06 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.8
Q ss_pred CCccccccccchhh
Q 028946 96 GGRFLNTKKLNDNA 109 (201)
Q Consensus 96 GGRFLt~ke~~~~~ 109 (201)
.||||+..|++.-.
T Consensus 13 ~gRyls~~eL~~l~ 26 (160)
T d1alla_ 13 EARYLSPGELDRIK 26 (160)
T ss_dssp TTSCCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHH
Confidence 59999999998754
No 9
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.20 E-value=2.5e+02 Score=15.53 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=6.3
Q ss_pred CCCceeech
Q 028946 13 EEEPVYVNA 21 (201)
Q Consensus 13 ~eePiYVNA 21 (201)
+-.+.|||-
T Consensus 14 ~G~~Yyinh 22 (33)
T d2jmfa1 14 AGERFFVDH 22 (33)
T ss_dssp TSCEEEEET
T ss_pred CCCEEEEEC
Confidence 446888884
No 10
>d1hh1a_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=2.95 E-value=3e+02 Score=19.71 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.0
Q ss_pred CCceeechhhhHHHHHH
Q 028946 14 EEPVYVNAKQYRGILRR 30 (201)
Q Consensus 14 eePiYVNAKQY~rILrR 30 (201)
..+|||...|+..++.-
T Consensus 55 ~~~iyi~~eqve~L~~f 71 (132)
T d1hh1a_ 55 EGKIYVRREQAEGIIEF 71 (132)
T ss_dssp TSCEEECHHHHHHHHHH
T ss_pred cccEEECHHHHHHHHHH
Confidence 47999999999887754
Done!