Query 028947
Match_columns 201
No_of_seqs 178 out of 1280
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e0o_A Peptide methionine sulf 100.0 2.1E-71 7.2E-76 451.3 10.9 124 77-201 4-127 (144)
2 2k8d_A Peptide methionine sulf 100.0 7.2E-71 2.4E-75 451.1 7.0 128 73-201 19-147 (151)
3 3cxk_A Methionine-R-sulfoxide 100.0 8.5E-70 2.9E-74 449.6 12.7 130 71-201 29-160 (164)
4 3hcg_A Peptide methionine sulf 100.0 3.6E-70 1.2E-74 444.9 9.0 127 74-201 2-130 (146)
5 3hcj_A MSRB, peptide methionin 100.0 5.2E-69 1.8E-73 441.2 10.8 122 79-201 14-136 (154)
6 2l1u_A MSRB2, methionine-R-sul 100.0 8.4E-70 2.9E-74 441.5 5.8 122 79-201 1-130 (143)
7 3e0m_A Peptide methionine sulf 100.0 2.3E-64 7.8E-69 451.0 11.7 128 73-201 167-296 (313)
8 2kv1_A Methionine-R-sulfoxide 100.0 1.7E-54 5.8E-59 344.7 9.7 99 101-201 5-106 (124)
9 2kao_A Methionine-R-sulfoxide 100.0 2.1E-53 7.1E-58 338.5 10.4 97 103-201 7-106 (124)
10 3mao_A Methionine-R-sulfoxide 100.0 1.1E-53 3.7E-58 332.0 8.5 94 106-201 4-99 (105)
11 1pft_A TFIIB, PFTFIIBN; N-term 76.6 2.4 8.4E-05 27.2 3.3 32 110-143 19-50 (50)
12 1dl6_A Transcription factor II 75.0 2.4 8.1E-05 28.8 3.0 33 109-143 24-56 (58)
13 3gox_A Restriction endonucleas 69.0 4.2 0.00014 34.5 3.8 69 83-180 116-184 (200)
14 3k7a_M Transcription initiatio 38.9 18 0.00061 31.6 2.8 34 108-143 35-68 (345)
15 3tf7_C 42F3 MUT7 SCFV (42F3 al 36.6 11 0.00037 29.5 1.0 22 110-131 219-243 (256)
16 3fac_A Putative uncharacterize 35.8 22 0.00076 26.0 2.6 31 163-197 66-96 (118)
17 2znx_A SCFV; fluorotryptohpan, 34.9 14 0.00047 28.6 1.3 20 111-130 210-229 (242)
18 3h0g_I DNA-directed RNA polyme 32.6 17 0.00059 27.2 1.5 20 159-178 67-86 (113)
19 1twf_I B12.6, DNA-directed RNA 31.3 24 0.00082 26.7 2.1 20 159-178 67-86 (122)
20 2kn9_A Rubredoxin; metalloprot 28.8 83 0.0028 22.8 4.6 22 112-140 24-45 (81)
21 2k2d_A Ring finger and CHY zin 27.8 30 0.001 24.7 2.0 32 142-173 15-46 (79)
22 4rxn_A Rubredoxin; electron tr 27.1 52 0.0018 22.1 3.0 19 115-140 3-21 (54)
23 1e8j_A Rubredoxin; iron-sulfur 26.4 70 0.0024 21.1 3.5 19 115-140 3-21 (52)
24 2apo_B Ribosome biogenesis pro 25.8 25 0.00087 24.3 1.3 12 118-129 21-32 (60)
25 1qyp_A RNA polymerase II; tran 25.5 31 0.0011 22.6 1.6 17 159-175 10-26 (57)
26 3qt1_I DNA-directed RNA polyme 25.4 61 0.0021 25.2 3.6 20 159-178 87-106 (133)
27 2v3b_B Rubredoxin 2, rubredoxi 25.4 59 0.002 21.7 3.0 19 115-140 3-21 (55)
28 3uzq_A Anti-dengue MAB 4E11; d 24.6 27 0.00091 27.0 1.3 21 110-130 216-238 (253)
29 3omz_A Human vdelta1 gamma del 24.4 23 0.0008 27.4 1.0 11 110-120 218-228 (259)
30 1yk4_A Rubredoxin, RD; electro 23.9 64 0.0022 21.3 3.0 19 115-140 2-20 (52)
31 1vq8_1 50S ribosomal protein L 23.5 33 0.0011 23.7 1.5 27 114-140 16-43 (57)
32 3j21_e 50S ribosomal protein L 23.1 34 0.0012 24.0 1.5 26 115-140 17-43 (62)
33 4a18_A RPL37, ribosomal protei 23.0 30 0.001 26.1 1.3 27 114-140 15-41 (94)
34 2atp_B T-cell surface glycopro 22.8 28 0.00096 24.0 1.1 12 110-121 88-99 (115)
35 1s24_A Rubredoxin 2; electron 22.4 64 0.0022 23.7 3.0 21 113-140 33-53 (87)
36 1tvd_A T cell receptor, ES204 21.9 30 0.001 23.8 1.1 12 110-121 85-96 (116)
37 2zkr_2 60S ribosomal protein L 21.6 43 0.0015 25.4 1.9 35 113-147 14-48 (97)
38 1x6m_A GFA, glutathione-depend 21.2 76 0.0026 25.5 3.5 34 162-195 96-129 (196)
39 3iz5_l 60S ribosomal protein L 21.1 30 0.001 26.2 0.9 26 115-140 16-41 (94)
40 1pew_A JTO2, A lambda-6 type i 20.7 32 0.0011 23.5 1.0 11 110-120 81-91 (109)
41 1twf_L ABC10-alpha, DNA-direct 20.7 59 0.002 22.8 2.4 36 87-124 2-37 (70)
42 1qfw_M FV, antibody (anti beta 20.6 46 0.0016 22.6 1.8 13 110-122 80-92 (108)
43 1sjv_A R9; camelids antibody, 20.6 49 0.0017 22.7 1.9 13 110-122 87-99 (114)
No 1
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=100.00 E-value=2.1e-71 Score=451.29 Aligned_cols=124 Identities=49% Similarity=0.843 Sum_probs=120.9
Q ss_pred CCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCCCceeeecCC
Q 028947 77 ISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLS 156 (201)
Q Consensus 77 ~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~~V~~~~D~s 156 (201)
++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+++|+++.|.+
T Consensus 4 ~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~~D~s 83 (144)
T 3e0o_A 4 YNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLDTS 83 (144)
T ss_dssp HHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEEEECC
T ss_pred CCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEeecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999988999999988
Q ss_pred CCCccEEEEEcCCCCCCccccCCCCCCCCCceeeeccceeeeeeC
Q 028947 157 IIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 201 (201)
Q Consensus 157 ~~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~F~p~ 201 (201)
+ ||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus 84 ~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~F~p~ 127 (144)
T 3e0o_A 84 H-GMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAALRFVPK 127 (144)
T ss_dssp T-TSCEEEEEETTTCCEEEEEESCCSSTTCCEEEECGGGEEEEEH
T ss_pred C-CceEEEEEcCCCCCccCCccCCCCCCCCCEeeeceeeEeeeec
Confidence 6 9999999999999999999999999999999999999999983
No 2
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=7.2e-71 Score=451.06 Aligned_cols=128 Identities=57% Similarity=1.087 Sum_probs=123.2
Q ss_pred CCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCC-Ccee
Q 028947 73 DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NMKS 151 (201)
Q Consensus 73 ~~~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~-~V~~ 151 (201)
..+.++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|++ +|.+
T Consensus 19 ~~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~ 98 (151)
T 2k8d_A 19 ERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKL 98 (151)
T ss_dssp ECSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEEC
T ss_pred cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEE
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999974 8999
Q ss_pred eecCCCCCccEEEEEcCCCCCCccccCCCCCCCCCceeeeccceeeeeeC
Q 028947 152 KLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 201 (201)
Q Consensus 152 ~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~F~p~ 201 (201)
+.|.++ ||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus 99 ~~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCINS~sL~F~p~ 147 (151)
T 2k8d_A 99 REDRSL-GMVRCEVLCARCDAHLGHVFDDGPRPTGKRYCMNSAALKFIPR 147 (151)
T ss_dssp CCCBTT-SSCEEEEEETTEEEEEEEEEECSSSSSCEEEEECSTTEEEECS
T ss_pred eeCCCC-CceEEEEEeCCCCCcCCcccCCCCCCCCCEEeeceeeecccch
Confidence 999986 9999999999999999999999999999999999999999984
No 3
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=100.00 E-value=8.5e-70 Score=449.57 Aligned_cols=130 Identities=51% Similarity=0.908 Sum_probs=123.2
Q ss_pred ccCCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCC-Cc
Q 028947 71 RVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NM 149 (201)
Q Consensus 71 ~~~~~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~-~V 149 (201)
+...+.++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|++ +|
T Consensus 29 ~~~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V 108 (164)
T 3cxk_A 29 PRYPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVI 108 (164)
T ss_dssp --CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSE
T ss_pred cccccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCce
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999975 68
Q ss_pred eeeecCCCCCccEEEEEcCCCCCCccccCCCCC-CCCCceeeeccceeeeeeC
Q 028947 150 KSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSASLKLKPK 201 (201)
Q Consensus 150 ~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP-~ptg~RYCINS~sL~F~p~ 201 (201)
.++.|.++ ||.||||+|++||+||||||+||| +|||+|||||||||+|+|+
T Consensus 109 ~~~~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~~ptg~RyCINS~sL~F~p~ 160 (164)
T 3cxk_A 109 DEKMDYTH-GMTRVEVRCNQCGAHLGHVFEDGPRDKTGLRYCINSAALNFEAK 160 (164)
T ss_dssp EEEEECGG-GCCEEEEEETTTCCEEEEEESCSCTTTTSCEEEECGGGEEEEEC
T ss_pred EEeECCCC-CcEEEEEEeCCCCCccCcccCCCCCCCCCCEEeeceeeEeeecc
Confidence 89999886 999999999999999999999999 9999999999999999984
No 4
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=100.00 E-value=3.6e-70 Score=444.88 Aligned_cols=127 Identities=49% Similarity=0.790 Sum_probs=121.3
Q ss_pred CCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CCceee
Q 028947 74 YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSK 152 (201)
Q Consensus 74 ~~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~V~~~ 152 (201)
+..++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+ ++|.++
T Consensus 2 ~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~ 81 (146)
T 3hcg_A 2 YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEH 81 (146)
T ss_dssp CCCCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEE
T ss_pred CCCCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEe
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999996 578899
Q ss_pred ecCCCCCccEEEEEcCCCCCCccccCCCCCC-CCCceeeeccceeeeeeC
Q 028947 153 LDLSIIFMPRQEVLCAVCDAHLGHVFDDGPP-PTGKRYCINSASLKLKPK 201 (201)
Q Consensus 153 ~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~-ptg~RYCINS~sL~F~p~ 201 (201)
.|.++ ||.||||+|++||+||||||+|||+ |||+|||||||||+|+|+
T Consensus 82 ~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~~~tg~RyCiNS~sL~F~p~ 130 (146)
T 3hcg_A 82 DDFSY-NMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPL 130 (146)
T ss_dssp EEEET-TEEEEEEEETTTCCEEEEEESCSCGGGTSCEEEECGGGEEEEEH
T ss_pred ecCCC-CcEEEEEEeCCCCCccCceeCCCCCCCCCCEEeeeeEEEEeeeh
Confidence 99886 9999999999999999999999997 599999999999999984
No 5
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=100.00 E-value=5.2e-69 Score=441.15 Aligned_cols=122 Identities=45% Similarity=0.877 Sum_probs=118.2
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CCceeeecCCC
Q 028947 79 DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSI 157 (201)
Q Consensus 79 d~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~V~~~~D~s~ 157 (201)
.+|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||+++|+ ++|+++.|.++
T Consensus 14 ~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s~ 93 (154)
T 3hcj_A 14 RDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREIRDTSY 93 (154)
T ss_dssp HHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEECCTTT
T ss_pred HHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEeecCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999997 67899999886
Q ss_pred CCccEEEEEcCCCCCCccccCCCCCCCCCceeeeccceeeeeeC
Q 028947 158 IFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 201 (201)
Q Consensus 158 ~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~F~p~ 201 (201)
||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus 94 -gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~F~p~ 136 (154)
T 3hcj_A 94 -GMIRTEIVCARCDSHLGHVFPDGPPPTGERHCLNSVSLAFTED 136 (154)
T ss_dssp -TTSCEEEEETTTCCEEEEEESCSCTTTTCEEEECGGGEEEEET
T ss_pred -CceEEEEEeCCCCCccCCccCCCCCCCCCEeeeceeeEEeeeC
Confidence 9999999999999999999999999999999999999999984
No 6
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=100.00 E-value=8.4e-70 Score=441.50 Aligned_cols=122 Identities=55% Similarity=1.130 Sum_probs=118.2
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccC--------CCCce
Q 028947 79 DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI--------GSNMK 150 (201)
Q Consensus 79 d~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i--------~~~V~ 150 (201)
++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||+++| +++|.
T Consensus 1 ~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~ 80 (143)
T 2l1u_A 1 MADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGIL 80 (143)
T ss_dssp CCCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEE
T ss_pred ChHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceE
Confidence 3689999999999999999999999999999999999999999999999999999999999999999 67899
Q ss_pred eeecCCCCCccEEEEEcCCCCCCccccCCCCCCCCCceeeeccceeeeeeC
Q 028947 151 SKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 201 (201)
Q Consensus 151 ~~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~F~p~ 201 (201)
+..|.++ ||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus 81 ~~~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCINS~sL~F~p~ 130 (143)
T 2l1u_A 81 RRLDTSL-GCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKPS 130 (143)
T ss_dssp EEEECTT-SSCEEEEEESSSCCCCEEEECCSSCGGGCEEEECCTTEEEEES
T ss_pred EeecccC-CceEEEEEECCCCCcCCcccCCCCCCCCCEEEeeeeEEeccch
Confidence 9999886 9999999999999999999999999999999999999999984
No 7
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.3e-64 Score=451.05 Aligned_cols=128 Identities=45% Similarity=0.669 Sum_probs=123.1
Q ss_pred CCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CCcee
Q 028947 73 DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKS 151 (201)
Q Consensus 73 ~~~~~sd~ewk~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~V~~ 151 (201)
.+..++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+
T Consensus 167 ~Y~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~ 246 (313)
T 3e0m_A 167 NYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKELIHY 246 (313)
T ss_dssp GGCCCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGGEEE
T ss_pred ccccCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCceEE
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999996 67899
Q ss_pred eecCCCCCccEEEEEcCCCCCCccccCCCCC-CCCCceeeeccceeeeeeC
Q 028947 152 KLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSASLKLKPK 201 (201)
Q Consensus 152 ~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP-~ptg~RYCINS~sL~F~p~ 201 (201)
+.|.++ ||.||||+|++||+||||||+||| +|||+|||||||||+|+|+
T Consensus 247 ~~D~s~-gm~RtEv~c~~c~~HLGHVF~DGp~~ptg~RyCiNs~sL~F~p~ 296 (313)
T 3e0m_A 247 YKDLSH-GMERIEVRSRSGSAHLGHVFTDGPRELGGLRYCINSASLRFVAK 296 (313)
T ss_dssp EEECCT-TCCEEEEEESSSCCEEEEEESCSCTTTTSCEEEECGGGEEEEEH
T ss_pred eecCCC-CcEEEEEECCCCCCccCcccCCCCCCCCCCEEeeceeeEeeecc
Confidence 999886 999999999999999999999999 8999999999999999984
No 8
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=100.00 E-value=1.7e-54 Score=344.74 Aligned_cols=99 Identities=35% Similarity=0.694 Sum_probs=90.9
Q ss_pred CCccCC-CCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCC-CceeeecCCCCCccEEEEEcCCCCCCccccC
Q 028947 101 RAFTGE-YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NMKSKLDLSIIFMPRQEVLCAVCDAHLGHVF 178 (201)
Q Consensus 101 ~pfsG~-y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~-~V~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF 178 (201)
.+|+|+ |||++++|+|+|++||+|||+|++|||||||||||+++|++ +|.+..|.+ +|.||||+|++||+||||||
T Consensus 5 ~~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~--~~~r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 5 SFFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKN--RPEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp CCCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSS--STTCEEEECTTTTCCCEEEC
T ss_pred cCccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceEEEEeccC--CceEEEEEEecCCCccCCcc
Confidence 379999 77889999999999999999999999999999999999975 565556644 68899999999999999999
Q ss_pred -CCCCCCCCceeeeccceeeeeeC
Q 028947 179 -DDGPPPTGKRYCINSASLKLKPK 201 (201)
Q Consensus 179 -~DGP~ptg~RYCINS~sL~F~p~ 201 (201)
+|||+|||+|||||||||+|+|+
T Consensus 83 ~~DGP~ptg~RyCINS~sL~F~p~ 106 (124)
T 2kv1_A 83 LNDGPKRGQSRFCIFSSSLKFVPK 106 (124)
T ss_dssp TTSCTTTTCSCEECCTTTEEEEEC
T ss_pred CCCCCCCCCCEEeecceeeEeEEC
Confidence 89999999999999999999995
No 9
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=100.00 E-value=2.1e-53 Score=338.49 Aligned_cols=97 Identities=36% Similarity=0.717 Sum_probs=91.1
Q ss_pred ccCC-CCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CCceeeecCCCCCccEEEEEcCCCCCCccccC-C
Q 028947 103 FTGE-YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVF-D 179 (201)
Q Consensus 103 fsG~-y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~V~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF-~ 179 (201)
|+|+ ||+++++|+|+|++||+|||+|++|||||||||||+++|+ ++|+++.|.+ +|.||||+|++||+|||||| +
T Consensus 7 ~~ge~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~pi~~~~v~~~~D~~--~~~RtEV~C~~Cg~HLGHVF~~ 84 (124)
T 2kao_A 7 FGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKN--RPEALKVSCGKCGNGLGHEFLN 84 (124)
T ss_dssp CCSCTTTTCCCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSCCCCCSSCEEEECSS--CTTCEEEECTTTTCCCEEECCS
T ss_pred cccccccCCCCCEEEEeCCCCCccccCcccccCCCCChhhCccCCccceEEEecCC--CCCEEEEEeCCCCCcCCccCCC
Confidence 5788 8899999999999999999999999999999999999997 6788888864 58899999999999999999 7
Q ss_pred CCCCCCCceeeeccceeeeeeC
Q 028947 180 DGPPPTGKRYCINSASLKLKPK 201 (201)
Q Consensus 180 DGP~ptg~RYCINS~sL~F~p~ 201 (201)
|||+|||+|||||||||+|+|+
T Consensus 85 DGP~ptg~RyCINS~sL~F~p~ 106 (124)
T 2kao_A 85 DGPKRGQSRFCIFSSSLKFVPK 106 (124)
T ss_dssp SCSSSSCCCEECCSSSEEEECC
T ss_pred CCcCCCCCEeeeCeEEEEeecc
Confidence 9999999999999999999985
No 10
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=100.00 E-value=1.1e-53 Score=331.99 Aligned_cols=94 Identities=34% Similarity=0.687 Sum_probs=89.1
Q ss_pred CCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCC-CCceeeecCCCCCccEEEEEcCCCCCCccccC-CCCCC
Q 028947 106 EYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVF-DDGPP 183 (201)
Q Consensus 106 ~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~-~~V~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF-~DGP~ 183 (201)
+||+++++|+|+|++||+|||+|++|||||||||||+++|+ ++|+++.|.+ +|.||||+|++||+|||||| +|||+
T Consensus 4 ~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~~--~~~RtEV~C~~C~~HLGHVF~~DGP~ 81 (105)
T 3mao_A 4 VFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN--RSEALKVSCGKCGNGLGHEFLNDGPK 81 (105)
T ss_dssp CCTTCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESCCSSTTSEEEEECTT--STTEEEEEETTTCCEEEEEETTCSSS
T ss_pred cccCCCCCEEEEcCCCCCccccCCcccCCCCCChhhccccCCCceEEEecCC--CCCEEEEEeCCCCCccCcccCCCCcC
Confidence 69999999999999999999999999999999999999997 5788888864 58999999999999999999 79999
Q ss_pred CCCceeeeccceeeeeeC
Q 028947 184 PTGKRYCINSASLKLKPK 201 (201)
Q Consensus 184 ptg~RYCINS~sL~F~p~ 201 (201)
|||+|||||||||+|+|+
T Consensus 82 ptg~RyCiNS~sL~F~p~ 99 (105)
T 3mao_A 82 PGQSRFSIFSSSLKFVPK 99 (105)
T ss_dssp TTCCEEEECGGGEEEEET
T ss_pred CCCCEEeeCeeeEEeeec
Confidence 999999999999999995
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=76.64 E-value=2.4 Score=27.22 Aligned_cols=32 Identities=19% Similarity=0.483 Sum_probs=25.4
Q ss_pred CCCCeEEEcccCCcccccCCCcccCCCCCccccc
Q 028947 110 TKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQ 143 (201)
Q Consensus 110 ~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~ 143 (201)
..+.|.++|..||..+ .+.-.+.|.-|.+|..
T Consensus 19 d~~~gelvC~~CG~v~--~e~~id~~~ewr~f~~ 50 (50)
T 1pft_A 19 DPERGEIVCAKCGYVI--EENIIDMGPEWRAFDA 50 (50)
T ss_dssp ETTTTEEEESSSCCBC--CCCCCCCCSSSSCCCC
T ss_pred cCCCCeEECcccCCcc--cccccccCCcccccCC
Confidence 3567999999999887 3455788999999963
No 12
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=74.95 E-value=2.4 Score=28.75 Aligned_cols=33 Identities=18% Similarity=0.496 Sum_probs=27.5
Q ss_pred CCCCCeEEEcccCCcccccCCCcccCCCCCccccc
Q 028947 109 NTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQ 143 (201)
Q Consensus 109 ~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~ 143 (201)
...+.|.++|..||.-| .+.-.|.|.-|.+|..
T Consensus 24 ~D~~~ge~vC~~CGlVl--~e~~iD~gpEWR~F~~ 56 (58)
T 1dl6_A 24 EDYRAGDMICPECGLVV--GDRVIDVGSEWRTFSN 56 (58)
T ss_dssp ECSSSCCEECTTTCCEE--CCSCCCCCCSCCCSCC
T ss_pred EeCCCCeEEeCCCCCEE--eccccccCCcccccCC
Confidence 34578999999999887 5567899999999974
No 13
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=68.95 E-value=4.2 Score=34.53 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=45.9
Q ss_pred HhcCCHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcccccCCCcccCCCCCccccccCCCCceeeecCCCCCccE
Q 028947 83 KRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPR 162 (201)
Q Consensus 83 k~~LTp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~~V~~~~D~s~~gm~R 162 (201)
+=.||++||+-+.+.-.+ | --++.|+.|+.++-.... ....-..|... |..|
T Consensus 116 ~YGIT~eey~~L~e~Qg~------~-----~~~G~C~ICg~~~~~~~~----------------k~lvVDHDH~T-G~VR 167 (200)
T 3gox_A 116 GVKLSSTEKKKMDEIAPP------K-----GSVFTCPICEKRSIVGVT----------------ANLVHDHNHDT-GWGR 167 (200)
T ss_dssp CSCCCHHHHHHHHTTCCC------T-----TCEEECTTTCCEEEBTTT----------------BCEEEEECTTT-CCEE
T ss_pred CcCCCHHHHHHHHHHccc------C-----CCCCcCcCCCCCCCcCcc----------------cceeeecccCC-CcEe
Confidence 346999999877664322 2 338999999999863211 11222233333 7778
Q ss_pred EEEEcCCCCCCccccCCC
Q 028947 163 QEVLCAVCDAHLGHVFDD 180 (201)
Q Consensus 163 tEV~C~~Cg~HLGHVF~D 180 (201)
.++|..|..=||++=+|
T Consensus 168 -GlLC~~CN~~LG~~~Dn 184 (200)
T 3gox_A 168 -EWICDSCNTGLGRFKDN 184 (200)
T ss_dssp -EEEEHHHHHHHHHTTTC
T ss_pred -cccchhhcchhccccCC
Confidence 89999999999997544
No 14
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=38.92 E-value=18 Score=31.60 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=26.8
Q ss_pred CCCCCCeEEEcccCCcccccCCCcccCCCCCccccc
Q 028947 108 WNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQ 143 (201)
Q Consensus 108 ~~~~~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~ 143 (201)
....+.|.++|..||.=| .+.-.|.|.-|-+|..
T Consensus 35 v~D~~~G~~vC~~CG~Vl--~e~~id~~~EwR~F~~ 68 (345)
T 3k7a_M 35 VERFSEGDVVCALCGLVL--SDKLVDTRSEWRTFSN 68 (345)
T ss_dssp CCCSSSCSCCCSSSCCCC--CCCCCCTTCCCCCC--
T ss_pred EEECCCCCEecCCCCeEc--ccccccCCcccccccc
Confidence 344679999999999988 5677888999999974
No 15
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=36.57 E-value=11 Score=29.52 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=16.5
Q ss_pred CCCCeEEEccc---CCcccccCCCc
Q 028947 110 TKTPGTYHCIC---CDTPLFESSTK 131 (201)
Q Consensus 110 ~~~~G~Y~C~~---Cg~pLFsS~~K 131 (201)
..+.|+|.|++ ||..+|...+|
T Consensus 219 ~~DsG~Y~C~a~n~~g~~~fG~gt~ 243 (256)
T 3tf7_C 219 PSQTSLYFCASSDAPGQLYFGEGSK 243 (256)
T ss_dssp GGGCEEEEEEEEEETTEEEECCCEE
T ss_pred HHHCEEEEEEecCCCCccEECCCeE
Confidence 35789999987 67777766555
No 16
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=35.77 E-value=22 Score=26.01 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=22.0
Q ss_pred EEEEcCCCCCCccccCCCCCCCCCceeeeccceee
Q 028947 163 QEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 197 (201)
Q Consensus 163 tEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~sL~ 197 (201)
.-..|+.||+||-+...++| ..|=||...|+
T Consensus 66 ~r~FC~~CGs~l~~~~~~~~----~~~~V~~g~ld 96 (118)
T 3fac_A 66 KHWFCRTCGIYTHHQRRSNP----EEYGVNVAILE 96 (118)
T ss_dssp EEEEETTTCCEEEEECSSCT----TEEEEEGGGBT
T ss_pred eeEECCCCCccccCccCCCC----CEEEEEecccC
Confidence 45789999999977665544 35667776664
No 17
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=34.85 E-value=14 Score=28.61 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=14.5
Q ss_pred CCCeEEEcccCCcccccCCC
Q 028947 111 KTPGTYHCICCDTPLFESST 130 (201)
Q Consensus 111 ~~~G~Y~C~~Cg~pLFsS~~ 130 (201)
.+.|.|.|++.+..+|...+
T Consensus 210 ~D~G~Y~C~a~~~~~fG~gt 229 (242)
T 2znx_A 210 EDTATYYCANXDGDYXGQGT 229 (242)
T ss_dssp GGCEEEEEEETTSSCBCCCE
T ss_pred CcCEEEEEeccCCcccCCCe
Confidence 57999999998755554443
No 18
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=32.57 E-value=17 Score=27.19 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=14.7
Q ss_pred CccEEEEEcCCCCCCccccC
Q 028947 159 FMPRQEVLCAVCDAHLGHVF 178 (201)
Q Consensus 159 gm~RtEV~C~~Cg~HLGHVF 178 (201)
..+|+++.|.+||.+=-..|
T Consensus 67 tlp~~~~~Cp~C~~~~a~~~ 86 (113)
T 3h0g_I 67 TLPRSDKECPRCHQHEAVFY 86 (113)
T ss_dssp SSCBCCSCCSSSCCSCEEEE
T ss_pred cCCCcccCCCCCCCceEEEE
Confidence 46899999999996543333
No 19
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=31.31 E-value=24 Score=26.75 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=14.8
Q ss_pred CccEEEEEcCCCCCCccccC
Q 028947 159 FMPRQEVLCAVCDAHLGHVF 178 (201)
Q Consensus 159 gm~RtEV~C~~Cg~HLGHVF 178 (201)
..+||++.|.+||.+=-..|
T Consensus 67 t~p~t~~~Cp~C~~~~a~~~ 86 (122)
T 1twf_I 67 TLPRSDRECPKCHSRENVFF 86 (122)
T ss_dssp TSCCCCCCCTTTCCCCEEEE
T ss_pred cccccCCCCCCCCCCEEEEE
Confidence 56789999999996544333
No 20
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=28.79 E-value=83 Score=22.83 Aligned_cols=22 Identities=32% Similarity=0.934 Sum_probs=15.7
Q ss_pred CCeEEEcccCCcccccCCCcccCCCCCcc
Q 028947 112 TPGTYHCICCDTPLFESSTKFDSGTGWPS 140 (201)
Q Consensus 112 ~~G~Y~C~~Cg~pLFsS~~KFdSg~GWPS 140 (201)
+...|.|.+||. -||.-.|+|-
T Consensus 24 em~~y~C~vCGy-------vYD~~~Gdp~ 45 (81)
T 2kn9_A 24 DYKLFRCIQCGF-------EYDEALGWPE 45 (81)
T ss_dssp CCCEEEETTTCC-------EEETTTCBTT
T ss_pred CcceEEeCCCCE-------EEcCCcCCcc
Confidence 355899999994 3666666663
No 21
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=27.78 E-value=30 Score=24.72 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=11.6
Q ss_pred cccCCCCceeeecCCCCCccEEEEEcCCCCCC
Q 028947 142 YQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAH 173 (201)
Q Consensus 142 ~~~i~~~V~~~~D~s~~gm~RtEV~C~~Cg~H 173 (201)
|+-++..|....-...+....++|.|..|+.-
T Consensus 15 ~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~ 46 (79)
T 2k2d_A 15 WRQLDDEVAQTPMPSEYQNMTVDILCNDCNGR 46 (79)
T ss_dssp ------------------CCEEEEEESSSCCE
T ss_pred HHHHHHHHHhCCCCHHHhCCEeEEECCCCCCC
Confidence 45566555543221123445789999999974
No 22
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=27.09 E-value=52 Score=22.12 Aligned_cols=19 Identities=32% Similarity=0.789 Sum_probs=14.6
Q ss_pred EEEcccCCcccccCCCcccCCCCCcc
Q 028947 115 TYHCICCDTPLFESSTKFDSGTGWPS 140 (201)
Q Consensus 115 ~Y~C~~Cg~pLFsS~~KFdSg~GWPS 140 (201)
.|.|..|| --||.--|+|.
T Consensus 3 ~y~C~vCG-------yvYd~~~Gdp~ 21 (54)
T 4rxn_A 3 KYTCTVCG-------YIYDPEDGDPD 21 (54)
T ss_dssp CEEETTTC-------CEECTTTCBGG
T ss_pred ceECCCCC-------eEECCCcCCcc
Confidence 59999999 35777777774
No 23
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=26.35 E-value=70 Score=21.09 Aligned_cols=19 Identities=32% Similarity=0.830 Sum_probs=14.1
Q ss_pred EEEcccCCcccccCCCcccCCCCCcc
Q 028947 115 TYHCICCDTPLFESSTKFDSGTGWPS 140 (201)
Q Consensus 115 ~Y~C~~Cg~pLFsS~~KFdSg~GWPS 140 (201)
.|.|..||. -||.-.|+|-
T Consensus 3 ~y~C~~CGy-------vYd~~~Gdp~ 21 (52)
T 1e8j_A 3 IYVCTVCGY-------EYDPAKGDPD 21 (52)
T ss_dssp CEECSSSCC-------CCCTTTCCTT
T ss_pred cEEeCCCCe-------EEcCCcCCcc
Confidence 599999993 4677677763
No 24
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=25.80 E-value=25 Score=24.31 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=8.6
Q ss_pred cccCCcccccCC
Q 028947 118 CICCDTPLFESS 129 (201)
Q Consensus 118 C~~Cg~pLFsS~ 129 (201)
|..||.++.++.
T Consensus 21 CP~CG~~T~~~h 32 (60)
T 2apo_B 21 CPKCGEKTVIPK 32 (60)
T ss_dssp CSSSCSBCBCCC
T ss_pred CcCCCCcCCCCC
Confidence 788888875553
No 25
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=25.46 E-value=31 Score=22.55 Aligned_cols=17 Identities=18% Similarity=0.628 Sum_probs=13.3
Q ss_pred CccEEEEEcCCCCCCcc
Q 028947 159 FMPRQEVLCAVCDAHLG 175 (201)
Q Consensus 159 gm~RtEV~C~~Cg~HLG 175 (201)
..+++++.|.+||.+--
T Consensus 10 ~~~~~~~~Cp~Cg~~~~ 26 (57)
T 1qyp_A 10 TLPTTKITCPKCGNDTA 26 (57)
T ss_dssp SSCEEECCCTTTCCSEE
T ss_pred cCCceEeECCCCCCCEE
Confidence 45788999999997443
No 26
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=25.43 E-value=61 Score=25.18 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=0.0
Q ss_pred CccEEEEEcCCCCCCccccC
Q 028947 159 FMPRQEVLCAVCDAHLGHVF 178 (201)
Q Consensus 159 gm~RtEV~C~~Cg~HLGHVF 178 (201)
.++|+++.|.+||..=-..|
T Consensus 87 tlp~t~~~CpkCg~~~a~f~ 106 (133)
T 3qt1_I 87 TLPRSDRECPKCHSRENVFF 106 (133)
T ss_dssp --------------------
T ss_pred cCCcccCCCCCCCCceEEEE
Confidence 45799999999996644434
No 27
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=25.36 E-value=59 Score=21.71 Aligned_cols=19 Identities=26% Similarity=0.880 Sum_probs=14.3
Q ss_pred EEEcccCCcccccCCCcccCCCCCcc
Q 028947 115 TYHCICCDTPLFESSTKFDSGTGWPS 140 (201)
Q Consensus 115 ~Y~C~~Cg~pLFsS~~KFdSg~GWPS 140 (201)
.|.|..||. -||.-.|+|-
T Consensus 3 ~y~C~~CGy-------vYd~~~Gdp~ 21 (55)
T 2v3b_B 3 KWQCVVCGF-------IYDEALGLPE 21 (55)
T ss_dssp EEEETTTCC-------EEETTTCBTT
T ss_pred cEEeCCCCe-------EECCCcCCcc
Confidence 699999993 4676677774
No 28
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=24.64 E-value=27 Score=26.99 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=13.2
Q ss_pred CCCCeEEEccc--CCcccccCCC
Q 028947 110 TKTPGTYHCIC--CDTPLFESST 130 (201)
Q Consensus 110 ~~~~G~Y~C~~--Cg~pLFsS~~ 130 (201)
..+.|+|.|++ |+..+|...+
T Consensus 216 ~~DsG~Y~C~~~n~~~~~fg~gt 238 (253)
T 3uzq_A 216 ADDVATYFCQRSNEVPWTFGGGT 238 (253)
T ss_dssp GGGCEEEEEEECSSSSCCBCCCE
T ss_pred HHHCEEEEEEEccCCCcEECCCE
Confidence 35789999987 4434444333
No 29
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=24.45 E-value=23 Score=27.41 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=9.1
Q ss_pred CCCCeEEEccc
Q 028947 110 TKTPGTYHCIC 120 (201)
Q Consensus 110 ~~~~G~Y~C~~ 120 (201)
..+.|+|.|++
T Consensus 218 ~~DsG~Y~C~~ 228 (259)
T 3omz_A 218 LEDSAKYFCAL 228 (259)
T ss_dssp GGGCSEEEEEE
T ss_pred hhHCEEEEEEE
Confidence 35789999987
No 30
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=23.94 E-value=64 Score=21.28 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=14.3
Q ss_pred EEEcccCCcccccCCCcccCCCCCcc
Q 028947 115 TYHCICCDTPLFESSTKFDSGTGWPS 140 (201)
Q Consensus 115 ~Y~C~~Cg~pLFsS~~KFdSg~GWPS 140 (201)
.|.|..||. -||.-.|+|-
T Consensus 2 ~~~C~~CGy-------vYd~~~Gdp~ 20 (52)
T 1yk4_A 2 KLSCKICGY-------IYDEDEGDPD 20 (52)
T ss_dssp EEEESSSSC-------EEETTTCBGG
T ss_pred cEEeCCCCe-------EECCCcCCcc
Confidence 699999993 4677777774
No 31
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=23.46 E-value=33 Score=23.72 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.3
Q ss_pred eEEEcccCCcccccCCCcccCCCCC-cc
Q 028947 114 GTYHCICCDTPLFESSTKFDSGTGW-PS 140 (201)
Q Consensus 114 G~Y~C~~Cg~pLFsS~~KFdSg~GW-PS 140 (201)
=.=.|..||..-|.-+.|.=+.||+ |+
T Consensus 16 tH~~CrRCG~~syH~qK~~Ca~CGygpa 43 (57)
T 1vq8_1 16 THTKCRRCGEKSYHTKKKVCSSCGFGKS 43 (57)
T ss_dssp CEEECTTTCSEEEETTTTEETTTCTTTC
T ss_pred ccccccccCChhhhccccccccccCCch
Confidence 3568999999999999999999999 87
No 32
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.10 E-value=34 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=23.1
Q ss_pred EEEcccCCcccccCCCcccCCCCC-cc
Q 028947 115 TYHCICCDTPLFESSTKFDSGTGW-PS 140 (201)
Q Consensus 115 ~Y~C~~Cg~pLFsS~~KFdSg~GW-PS 140 (201)
.=.|..||.--|.-+.|.-+.||+ |+
T Consensus 17 H~lCrRCG~~syH~qK~~Ca~CGygps 43 (62)
T 3j21_e 17 HIRCRRCGRVSYNVKKGYCAACGFGRS 43 (62)
T ss_dssp CCBCSSSCSBCEETTTTEETTTCTTTC
T ss_pred eeeecccCcchhccccccccccCCchh
Confidence 347999999999999999999999 64
No 33
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=23.01 E-value=30 Score=26.15 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=24.6
Q ss_pred eEEEcccCCcccccCCCcccCCCCCcc
Q 028947 114 GTYHCICCDTPLFESSTKFDSGTGWPS 140 (201)
Q Consensus 114 G~Y~C~~Cg~pLFsS~~KFdSg~GWPS 140 (201)
-.-.|..||.--|.-+.+.-+.||+|+
T Consensus 15 tHtlCrRCG~~syH~qK~~Ca~CGyps 41 (94)
T 4a18_A 15 THTLCRRCGKATYHKQKLRCAACGYPD 41 (94)
T ss_dssp CEEECTTTCSEEEETTTTEESSSCGGG
T ss_pred ccceecCcCchhhhhccccccccCCcH
Confidence 366899999999999999999999995
No 34
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*
Probab=22.83 E-value=28 Score=23.97 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=9.6
Q ss_pred CCCCeEEEcccC
Q 028947 110 TKTPGTYHCICC 121 (201)
Q Consensus 110 ~~~~G~Y~C~~C 121 (201)
..+.|+|.|+.-
T Consensus 88 ~~DsG~Y~C~~~ 99 (115)
T 2atp_B 88 PEDSDFYFCATV 99 (115)
T ss_dssp GGGCEEEEEEEE
T ss_pred HHHCEEEEEeEc
Confidence 457999999874
No 35
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=22.44 E-value=64 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=15.4
Q ss_pred CeEEEcccCCcccccCCCcccCCCCCcc
Q 028947 113 PGTYHCICCDTPLFESSTKFDSGTGWPS 140 (201)
Q Consensus 113 ~G~Y~C~~Cg~pLFsS~~KFdSg~GWPS 140 (201)
...|.|..||. -||.--|+|-
T Consensus 33 m~~y~C~vCGy-------vYD~~~Gdp~ 53 (87)
T 1s24_A 33 YLKWICITCGH-------IYDEALGDEA 53 (87)
T ss_dssp CCEEEETTTTE-------EEETTSCCTT
T ss_pred CceEECCCCCe-------EecCCcCCcc
Confidence 45899999993 3666667763
No 36
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=21.95 E-value=30 Score=23.84 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=9.5
Q ss_pred CCCCeEEEcccC
Q 028947 110 TKTPGTYHCICC 121 (201)
Q Consensus 110 ~~~~G~Y~C~~C 121 (201)
..+.|+|.|++-
T Consensus 85 ~~DsG~Y~C~~~ 96 (116)
T 1tvd_A 85 TEDSATYYCAFT 96 (116)
T ss_dssp GGGCEEEEEEEE
T ss_pred hHHCEEEEEEEe
Confidence 357999999864
No 37
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=21.62 E-value=43 Score=25.36 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=27.5
Q ss_pred CeEEEcccCCcccccCCCcccCCCCCccccccCCC
Q 028947 113 PGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS 147 (201)
Q Consensus 113 ~G~Y~C~~Cg~pLFsS~~KFdSg~GWPSF~~~i~~ 147 (201)
.-.-.|..||..-|.=+.+.=+.||+|++..---+
T Consensus 14 KtH~lCrRCG~~sfH~qK~~CgkCGYpa~k~R~yn 48 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYN 48 (97)
T ss_dssp CCEECCTTTCSSCEETTSCCBTTTCTTTSSCCCCS
T ss_pred CCCCcCCCCCCccCcCccccCcccCCchHhccCcc
Confidence 44568999999999888777788999998654433
No 38
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=21.22 E-value=76 Score=25.49 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCCccccCCCCCCCCCceeeeccce
Q 028947 162 RQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 195 (201)
Q Consensus 162 RtEV~C~~Cg~HLGHVF~DGP~ptg~RYCINS~s 195 (201)
.....|+.||+||-+...+.+.|....+=|+...
T Consensus 96 ~~r~FC~~CGs~l~~~~~~~~~~~~~~~~V~~g~ 129 (196)
T 1x6m_A 96 IQRHRCRDCGVHMYGRIENRDHPFYGLDFVHTEL 129 (196)
T ss_dssp EEEEEETTTCCEEEEEECCTTSTTTTEEEECGGG
T ss_pred eeeEECCCCCCcCCcccccCCCCccceEEEEEec
Confidence 3456899999999777665433322234444433
No 39
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=21.14 E-value=30 Score=26.18 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=24.3
Q ss_pred EEEcccCCcccccCCCcccCCCCCcc
Q 028947 115 TYHCICCDTPLFESSTKFDSGTGWPS 140 (201)
Q Consensus 115 ~Y~C~~Cg~pLFsS~~KFdSg~GWPS 140 (201)
.-.|..||.--|.-+.+.-+.||+|+
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGyps 41 (94)
T 3iz5_l 16 HTLCVRCGRRSFHLQKSTCSSCGYPA 41 (94)
T ss_dssp EEECTTTCSEEEEGGGTEETTTCSSC
T ss_pred cceecCcCchhhhcccccccccCCch
Confidence 56899999999999999999999996
No 40
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=20.70 E-value=32 Score=23.53 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=8.9
Q ss_pred CCCCeEEEccc
Q 028947 110 TKTPGTYHCIC 120 (201)
Q Consensus 110 ~~~~G~Y~C~~ 120 (201)
..+.|+|.|++
T Consensus 81 ~~DsG~Y~C~~ 91 (109)
T 1pew_A 81 TEDEADYYCQS 91 (109)
T ss_dssp GGGCEEEEEEE
T ss_pred hhhCEEEEEEE
Confidence 35799999976
No 41
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=20.68 E-value=59 Score=22.80 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=11.2
Q ss_pred CHHHHHHHhhcCCCCCccCCCCCCCCCeEEEcccCCcc
Q 028947 87 TGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTP 124 (201)
Q Consensus 87 Tp~qy~V~r~~GTE~pfsG~y~~~~~~G~Y~C~~Cg~p 124 (201)
+-|+|+|=-..| ....|--.....+-.|.|..||..
T Consensus 2 sre~~q~p~~~~--~~~~~g~~~~~~~v~Y~C~~CG~~ 37 (70)
T 1twf_L 2 SREGFQIPTNLD--AAAAGTSQARTATLKYICAECSSK 37 (70)
T ss_dssp -------------------------CCCCEECSSSCCE
T ss_pred CcccccCCCCcC--ccccccccCCCceEEEECCCCCCc
Confidence 345666654323 233333333335678999999986
No 42
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=20.65 E-value=46 Score=22.65 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=10.1
Q ss_pred CCCCeEEEcccCC
Q 028947 110 TKTPGTYHCICCD 122 (201)
Q Consensus 110 ~~~~G~Y~C~~Cg 122 (201)
..+.|+|.|++-.
T Consensus 80 ~~DsG~Y~C~~~~ 92 (108)
T 1qfw_M 80 AEDFADYHCGQTY 92 (108)
T ss_dssp TTCCSEEEEEECS
T ss_pred hhhCEEEEEEEcc
Confidence 4579999998753
No 43
>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1
Probab=20.58 E-value=49 Score=22.73 Aligned_cols=13 Identities=15% Similarity=0.352 Sum_probs=10.0
Q ss_pred CCCCeEEEcccCC
Q 028947 110 TKTPGTYHCICCD 122 (201)
Q Consensus 110 ~~~~G~Y~C~~Cg 122 (201)
..+.|+|.|++-.
T Consensus 87 ~~DsG~Y~C~~~~ 99 (114)
T 1sjv_A 87 PEDTAVYYCYTHY 99 (114)
T ss_dssp GGGCSEEEEEECC
T ss_pred HHHCEEEEEeEEc
Confidence 3578999998753
Done!