BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028948
         (201 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O27710|PSLS_METTH Phosphosulfolactate synthase OS=Methanothermobacter
           thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
           10044 / NBRC 100330 / Delta H) GN=comA PE=3 SV=1
          Length = 258

 Score = 43.5 bits (101), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 11/151 (7%)

Query: 17  RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
           R+ KPR+ G+T +       +S+     D+ E    +VD +KF  G+  L  +  ++E V
Sbjct: 11  RSGKPRKNGITMVLDKGMGPASAR----DLMEISSDYVDFIKFGWGTLPLHRRDTVKEKV 66

Query: 77  KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136
                 DV    G      I +     +EY ++ + +GF+T+E++ G++EI  E   R +
Sbjct: 67  DMYRSFDVEPYPGGTLFE-IAHLNDKVEEYFQEARSLGFETLEISNGTVEIETEEKCRLI 125

Query: 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167
            +    G      F V+        +RDR  
Sbjct: 126 EMAVDEG------FMVLSEVGKKDPERDRLL 150


>sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii
           (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
           100440) GN=comA PE=1 SV=1
          Length = 251

 Score = 39.7 bits (91), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 43  LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPS 101
           +ED  +  G ++D +KF  G+ +++ +  ++E +       + V   G   E+    G  
Sbjct: 28  VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK- 86

Query: 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144
            F E++ +C+++GF+ +E++ GS +I  E     ++  K  G 
Sbjct: 87  -FDEFLNECEKLGFEAVEISDGSSDISLEERKNAIKRAKDNGF 128


>sp|Q6P7H4|NIPA_XENLA NIPA-like protein OS=Xenopus laevis GN=zc3hc1 PE=2 SV=1
          Length = 477

 Score = 32.7 bits (73), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 13/101 (12%)

Query: 72  IEEVVKRAHQHDVYVSTGDWAEH----LIRNGPSAFKEYVEDCKQVGFDTIEL------N 121
           ++E +++AH+   +       EH    L+    S   ++VE    +    ++L      +
Sbjct: 137 LQEALRKAHEKFCFWPDSPCPEHFWALLVTEPSSVLSDFVERFHNLCHLEMQLPSLKHED 196

Query: 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162
           V S++I E+T+ R +RL++    + KPK     N   +PSD
Sbjct: 197 VKSMDITEDTVSRLLRLIED---ELKPKEGREANSHSLPSD 234


>sp|Q9AF21|PSLS_XANP2 Phosphosulfolactate synthase OS=Xanthobacter autotrophicus (strain
           ATCC BAA-1158 / Py2) GN=xecG PE=3 SV=2
          Length = 303

 Score = 32.3 bits (72), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/142 (20%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 5   YYGWKSFDEYEDR-AEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGS 63
           + G  + D   DR   +PR+ G+T +       ++    L DI      ++D  K + G+
Sbjct: 11  WRGVLALDAAIDRRVTQPRKRGITMVIDKGIGPAA----LADIDAVAAPYIDHWKLAFGT 66

Query: 64  HSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122
            +LMP   + + +    +  V     G   E  +       + +++  +++GF  +E++ 
Sbjct: 67  SALMPPQVLADKLAFLRERGVLTYPGGTLLEAAVVQ--QHCRVFMQRAEELGFTAVEISD 124

Query: 123 GSLEIPEETLLRYVRLVKSAGL 144
           G++++P +   R +   + AGL
Sbjct: 125 GTIDLPRDRRRRIIDCAREAGL 146


>sp|A7IDU6|HOA_XANP2 4-hydroxy-2-oxovalerate aldolase OS=Xanthobacter autotrophicus
           (strain ATCC BAA-1158 / Py2) GN=Xaut_0938 PE=3 SV=1
          Length = 344

 Score = 32.0 bits (71), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 13/90 (14%)

Query: 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDR 163
           ++++E  +++G DT    + +  IP E L    RL++S G  A+  +      + +P D 
Sbjct: 123 RQHIEAARELGMDTATFLMMAHMIPPEALAEQARLMESYG--AECVYVTDSAGALLPED- 179

Query: 164 DRAFGAYVARAPRSTDKLFLASNPEIEVGV 193
                 Y AR     D L     PE E+GV
Sbjct: 180 ------YTARVKTLRDAL----RPETEIGV 199


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,568,404
Number of Sequences: 539616
Number of extensions: 3215607
Number of successful extensions: 7173
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7169
Number of HSP's gapped (non-prelim): 7
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)