Query 028948
Match_columns 201
No_of_seqs 120 out of 173
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02679 ComA: (2R)-phospho-3- 100.0 6E-63 1.3E-67 430.5 12.8 164 13-187 1-180 (244)
2 TIGR03849 arch_ComA phosphosul 100.0 2.3E-57 5E-62 394.0 14.4 151 26-187 1-168 (237)
3 COG1809 (2R)-phospho-3-sulfola 100.0 1.6E-55 3.4E-60 380.0 10.6 168 9-187 2-187 (258)
4 PRK06294 coproporphyrinogen II 96.6 0.0075 1.6E-07 55.2 7.2 90 52-148 57-158 (370)
5 PRK08195 4-hyroxy-2-oxovalerat 96.5 0.0093 2E-07 54.5 7.6 149 24-191 78-236 (337)
6 PRK08446 coproporphyrinogen II 96.4 0.015 3.3E-07 52.8 8.1 88 53-145 51-149 (350)
7 TIGR03217 4OH_2_O_val_ald 4-hy 96.2 0.02 4.4E-07 52.2 7.7 149 24-191 77-235 (333)
8 cd07939 DRE_TIM_NifV Streptomy 96.0 0.014 3E-07 50.8 5.7 136 44-191 73-229 (259)
9 cd07943 DRE_TIM_HOA 4-hydroxy- 96.0 0.028 6E-07 49.0 7.5 148 24-191 75-232 (263)
10 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.0 0.026 5.6E-07 49.8 7.2 145 32-191 83-239 (275)
11 PRK05628 coproporphyrinogen II 95.9 0.029 6.2E-07 51.1 7.5 94 52-149 58-164 (375)
12 cd07944 DRE_TIM_HOA_like 4-hyd 95.9 0.017 3.7E-07 50.9 5.6 149 24-191 72-230 (266)
13 PRK13209 L-xylulose 5-phosphat 95.7 0.015 3.2E-07 50.1 4.4 57 90-147 11-74 (283)
14 PRK05904 coproporphyrinogen II 95.3 0.079 1.7E-06 48.5 8.0 89 52-145 55-154 (353)
15 TIGR00539 hemN_rel putative ox 95.2 0.057 1.2E-06 49.0 6.8 94 52-148 50-155 (360)
16 TIGR00538 hemN oxygen-independ 95.2 0.062 1.3E-06 50.4 7.2 90 53-145 102-202 (455)
17 PRK07379 coproporphyrinogen II 95.2 0.038 8.3E-07 51.2 5.7 91 52-145 65-166 (400)
18 PRK13210 putative L-xylulose 5 95.1 0.047 1E-06 46.7 5.6 57 90-147 6-69 (284)
19 cd06547 GH85_ENGase Endo-beta- 95.1 0.085 1.9E-06 48.5 7.5 94 50-146 29-144 (339)
20 COG0826 Collagenase and relate 94.8 0.15 3.3E-06 47.1 8.4 92 42-146 15-116 (347)
21 PRK13347 coproporphyrinogen II 94.7 0.12 2.6E-06 48.7 7.6 89 53-145 103-203 (453)
22 cd03174 DRE_TIM_metallolyase D 94.7 0.027 5.9E-07 47.8 3.0 127 54-191 88-237 (265)
23 cd07941 DRE_TIM_LeuA3 Desulfob 94.6 0.069 1.5E-06 47.0 5.5 131 51-191 89-242 (273)
24 PRK08208 coproporphyrinogen II 94.6 0.11 2.3E-06 48.6 7.0 91 54-146 92-193 (430)
25 PRK05660 HemN family oxidoredu 94.5 0.077 1.7E-06 48.8 5.8 92 52-146 57-159 (378)
26 PRK13125 trpA tryptophan synth 94.4 0.94 2E-05 39.2 12.0 115 39-158 16-144 (244)
27 PRK09249 coproporphyrinogen II 94.4 0.11 2.3E-06 48.9 6.5 89 53-144 102-201 (453)
28 TIGR02660 nifV_homocitr homoci 94.2 0.071 1.5E-06 48.9 4.7 129 50-190 82-231 (365)
29 TIGR03551 F420_cofH 7,8-dideme 94.0 0.61 1.3E-05 42.2 10.3 109 39-148 71-197 (343)
30 PRK11858 aksA trans-homoaconit 93.9 0.1 2.3E-06 48.1 5.3 134 42-190 80-234 (378)
31 cd07940 DRE_TIM_IPMS 2-isoprop 93.9 0.19 4.1E-06 43.9 6.6 140 42-191 74-236 (268)
32 PF00682 HMGL-like: HMGL-like 93.8 0.071 1.5E-06 45.1 3.8 139 41-190 67-227 (237)
33 PRK06582 coproporphyrinogen II 93.8 0.23 5.1E-06 46.0 7.5 92 52-146 61-163 (390)
34 PRK05799 coproporphyrinogen II 93.7 0.3 6.5E-06 44.4 7.8 89 53-145 51-150 (374)
35 PRK08599 coproporphyrinogen II 93.6 0.94 2E-05 41.3 11.0 89 53-145 51-151 (377)
36 PRK09057 coproporphyrinogen II 93.6 0.15 3.2E-06 46.9 5.7 94 52-148 54-158 (380)
37 TIGR00542 hxl6Piso_put hexulos 93.5 0.13 2.7E-06 44.5 4.9 55 92-147 8-69 (279)
38 cd04726 KGPDC_HPS 3-Keto-L-gul 93.4 0.8 1.7E-05 37.5 9.2 141 39-199 11-171 (202)
39 PRK08207 coproporphyrinogen II 93.0 0.39 8.5E-06 46.1 7.8 93 52-146 217-322 (488)
40 COG3623 SgaU Putative L-xylulo 93.0 0.23 5.1E-06 44.7 5.8 55 91-146 9-70 (287)
41 PRK09282 pyruvate carboxylase 92.9 0.32 7E-06 47.9 7.2 137 39-191 94-244 (592)
42 PRK05692 hydroxymethylglutaryl 92.8 0.18 4E-06 45.0 5.0 90 51-142 90-196 (287)
43 PRK13111 trpA tryptophan synth 92.8 0.46 1E-05 42.1 7.4 103 39-148 24-147 (258)
44 cd07948 DRE_TIM_HCS Saccharomy 92.7 0.22 4.8E-06 44.0 5.2 135 41-190 75-230 (262)
45 TIGR02495 NrdG2 anaerobic ribo 92.7 1.6 3.5E-05 35.5 10.0 98 39-147 48-157 (191)
46 cd04722 TIM_phosphate_binding 92.7 1.2 2.6E-05 34.7 9.0 129 42-180 13-149 (200)
47 TIGR02668 moaA_archaeal probab 92.7 0.6 1.3E-05 40.9 7.9 52 39-92 41-97 (302)
48 PRK12581 oxaloacetate decarbox 92.5 0.54 1.2E-05 45.4 7.9 135 41-191 105-253 (468)
49 COG2896 MoaA Molybdenum cofact 92.4 0.53 1.1E-05 43.4 7.5 98 39-145 44-152 (322)
50 PRK14042 pyruvate carboxylase 92.2 0.57 1.2E-05 46.4 7.9 154 23-191 75-244 (596)
51 PRK12331 oxaloacetate decarbox 92.1 0.33 7.2E-06 46.3 5.9 135 41-191 96-244 (448)
52 smart00729 Elp3 Elongator prot 91.8 3 6.5E-05 32.6 10.2 88 54-148 52-155 (216)
53 TIGR03151 enACPred_II putative 91.8 0.65 1.4E-05 41.9 7.2 96 67-180 45-142 (307)
54 PRK09856 fructoselysine 3-epim 91.7 0.45 9.8E-06 40.6 5.9 46 102-147 14-64 (275)
55 COG0159 TrpA Tryptophan syntha 91.7 0.84 1.8E-05 41.1 7.7 110 39-155 29-159 (265)
56 PLN02591 tryptophan synthase 91.6 0.78 1.7E-05 40.6 7.3 105 39-150 14-138 (250)
57 TIGR01108 oadA oxaloacetate de 91.4 0.66 1.4E-05 45.7 7.3 137 41-191 91-239 (582)
58 TIGR02090 LEU1_arch isopropylm 91.3 0.41 8.9E-06 44.0 5.4 88 53-142 84-182 (363)
59 TIGR02666 moaA molybdenum cofa 91.2 2.7 5.8E-05 37.6 10.5 94 39-145 44-154 (334)
60 TIGR03128 RuMP_HxlA 3-hexulose 91.1 2.2 4.9E-05 35.2 9.3 139 39-198 10-170 (206)
61 PF00215 OMPdecase: Orotidine 91.1 0.88 1.9E-05 38.7 7.0 97 39-143 11-111 (226)
62 PRK00164 moaA molybdenum cofac 91.1 0.95 2.1E-05 40.3 7.4 51 39-91 50-106 (331)
63 PRK12344 putative alpha-isopro 90.9 0.64 1.4E-05 45.1 6.7 157 20-190 69-247 (524)
64 PF04055 Radical_SAM: Radical 90.9 3.2 7E-05 31.1 9.3 95 39-145 29-142 (166)
65 PRK14041 oxaloacetate decarbox 90.9 0.7 1.5E-05 44.5 6.8 126 50-191 105-243 (467)
66 PRK09989 hypothetical protein; 90.9 0.5 1.1E-05 40.4 5.3 42 102-147 16-57 (258)
67 PRK07094 biotin synthase; Prov 90.8 3.5 7.6E-05 36.5 10.8 85 53-148 86-183 (323)
68 TIGR01212 radical SAM protein, 90.8 0.83 1.8E-05 40.9 6.9 90 57-150 81-183 (302)
69 PRK14040 oxaloacetate decarbox 90.7 1.3 2.7E-05 43.9 8.5 149 24-191 77-245 (593)
70 cd04724 Tryptophan_synthase_al 90.4 2.4 5.3E-05 36.7 9.2 101 41-148 14-134 (242)
71 TIGR03699 mena_SCO4550 menaqui 90.3 2.1 4.6E-05 38.4 9.0 109 39-148 73-199 (340)
72 PRK09058 coproporphyrinogen II 90.3 0.6 1.3E-05 44.0 5.7 89 53-145 114-214 (449)
73 cd07945 DRE_TIM_CMS Leptospira 90.2 0.38 8.1E-06 42.9 4.1 128 54-191 88-238 (280)
74 PRK01060 endonuclease IV; Prov 90.0 0.82 1.8E-05 39.3 5.9 44 102-145 13-62 (281)
75 TIGR02109 PQQ_syn_pqqE coenzym 90.0 2.4 5.1E-05 38.1 9.1 96 39-146 38-148 (358)
76 TIGR03234 OH-pyruv-isom hydrox 89.9 0.67 1.5E-05 39.3 5.3 42 102-147 15-56 (254)
77 PRK05301 pyrroloquinoline quin 89.7 2.3 5E-05 38.6 8.9 96 39-146 47-157 (378)
78 TIGR01211 ELP3 histone acetylt 89.7 3.2 6.9E-05 40.5 10.2 111 46-156 126-268 (522)
79 PRK13361 molybdenum cofactor b 89.7 1.3 2.9E-05 39.7 7.2 93 39-144 46-154 (329)
80 CHL00200 trpA tryptophan synth 89.6 1.4 3.1E-05 39.2 7.2 108 39-153 27-154 (263)
81 PRK09997 hydroxypyruvate isome 89.4 0.55 1.2E-05 40.1 4.4 48 95-148 11-58 (258)
82 smart00642 Aamy Alpha-amylase 89.3 1.1 2.4E-05 36.8 6.0 50 106-155 24-95 (166)
83 TIGR03470 HpnH hopanoid biosyn 88.9 3.1 6.8E-05 37.4 9.0 95 39-148 60-167 (318)
84 cd04743 NPD_PKS 2-Nitropropane 88.5 1.2 2.7E-05 40.9 6.2 119 42-182 18-139 (320)
85 TIGR00736 nifR3_rel_arch TIM-b 88.3 5.7 0.00012 34.8 10.0 96 39-142 78-188 (231)
86 PF00290 Trp_syntA: Tryptophan 88.3 2.3 4.9E-05 38.0 7.6 110 39-155 22-152 (259)
87 PRK12330 oxaloacetate decarbox 88.2 1.4 2.9E-05 43.0 6.6 151 24-191 77-247 (499)
88 TIGR00262 trpA tryptophan synt 88.2 2.6 5.7E-05 37.1 7.9 101 39-147 22-144 (256)
89 PF03060 NMO: Nitronate monoox 88.0 2.8 6.1E-05 37.9 8.2 76 92-179 92-168 (330)
90 PRK13813 orotidine 5'-phosphat 87.8 1.3 2.9E-05 37.0 5.5 37 39-75 14-50 (215)
91 COG1082 IolE Sugar phosphate i 87.6 1.5 3.2E-05 37.0 5.7 46 102-147 16-62 (274)
92 PRK08446 coproporphyrinogen II 87.3 4.1 8.8E-05 37.1 8.8 116 27-145 54-180 (350)
93 cd02874 GH18_CFLE_spore_hydrol 87.1 2.5 5.4E-05 37.3 7.1 89 46-138 18-125 (313)
94 smart00481 POLIIIAc DNA polyme 87.0 2 4.3E-05 29.5 5.2 46 100-148 14-59 (67)
95 cd03174 DRE_TIM_metallolyase D 86.9 5.5 0.00012 33.7 8.9 91 44-148 25-133 (265)
96 PF01212 Beta_elim_lyase: Beta 86.4 0.8 1.7E-05 41.0 3.7 78 39-122 107-193 (290)
97 TIGR00423 radical SAM domain p 86.3 8.6 0.00019 34.2 10.2 109 39-148 37-163 (309)
98 PRK13347 coproporphyrinogen II 86.3 3.9 8.4E-05 38.6 8.3 120 27-146 106-235 (453)
99 PF01301 Glyco_hydro_35: Glyco 85.7 2 4.4E-05 38.9 5.9 52 100-151 23-84 (319)
100 PRK05660 HemN family oxidoredu 85.6 5 0.00011 36.9 8.5 119 27-145 61-189 (378)
101 COG1105 FruK Fructose-1-phosph 85.5 9.4 0.0002 35.2 10.2 86 26-111 101-190 (310)
102 PF01261 AP_endonuc_2: Xylose 85.3 0.54 1.2E-05 37.4 1.8 40 107-146 1-43 (213)
103 cd01335 Radical_SAM Radical SA 85.3 10 0.00022 29.0 9.0 97 42-150 33-145 (204)
104 PRK08445 hypothetical protein; 85.3 11 0.00025 34.5 10.6 99 50-148 86-200 (348)
105 PRK07379 coproporphyrinogen II 85.0 5.2 0.00011 37.1 8.4 119 27-145 69-197 (400)
106 PRK12999 pyruvate carboxylase; 85.0 2.4 5.2E-05 44.9 6.9 140 39-191 625-781 (1146)
107 cd07938 DRE_TIM_HMGL 3-hydroxy 85.0 2.7 5.8E-05 37.3 6.2 97 41-142 77-190 (274)
108 cd06543 GH18_PF-ChiA-like PF-C 84.8 3.1 6.7E-05 37.5 6.6 78 69-146 53-142 (294)
109 PRK05926 hypothetical protein; 84.8 12 0.00026 34.8 10.7 90 59-148 120-225 (370)
110 PLN02746 hydroxymethylglutaryl 84.5 2.1 4.6E-05 39.7 5.6 117 41-164 125-268 (347)
111 PF04476 DUF556: Protein of un 84.4 6.5 0.00014 35.0 8.3 102 42-146 69-183 (235)
112 PRK05904 coproporphyrinogen II 84.2 5.6 0.00012 36.5 8.2 117 27-146 59-186 (353)
113 PRK00125 pyrF orotidine 5'-pho 84.0 5.7 0.00012 35.8 7.9 94 42-143 42-141 (278)
114 PLN02951 Molybderin biosynthes 83.8 5.4 0.00012 36.9 7.9 44 39-84 91-136 (373)
115 cd02875 GH18_chitobiase Chitob 83.7 2.9 6.4E-05 38.3 6.1 51 72-123 66-121 (358)
116 TIGR00539 hemN_rel putative ox 83.5 6.9 0.00015 35.5 8.4 118 27-145 54-182 (360)
117 cd07937 DRE_TIM_PC_TC_5S Pyruv 82.6 5.6 0.00012 35.1 7.2 98 43-148 26-136 (275)
118 PF01261 AP_endonuc_2: Xylose 82.6 1 2.2E-05 35.8 2.3 97 54-150 9-132 (213)
119 PRK08898 coproporphyrinogen II 82.2 6.2 0.00014 36.5 7.7 92 52-146 72-174 (394)
120 cd04730 NPD_like 2-Nitropropan 82.0 2.3 5.1E-05 35.6 4.4 110 47-179 22-134 (236)
121 PF00128 Alpha-amylase: Alpha 82.0 2.4 5.2E-05 35.5 4.5 52 103-154 6-76 (316)
122 TIGR01235 pyruv_carbox pyruvat 81.9 0.91 2E-05 48.1 2.3 115 67-191 622-779 (1143)
123 cd00019 AP2Ec AP endonuclease 81.8 2.4 5.2E-05 36.5 4.5 20 102-121 11-30 (279)
124 PF10566 Glyco_hydro_97: Glyco 81.7 3.5 7.7E-05 37.2 5.7 46 101-146 32-89 (273)
125 PRK05628 coproporphyrinogen II 81.4 5.6 0.00012 36.3 7.0 120 27-146 62-191 (375)
126 PRK09249 coproporphyrinogen II 81.4 7.3 0.00016 36.7 7.9 120 27-146 105-234 (453)
127 PRK09061 D-glutamate deacylase 81.2 11 0.00024 36.2 9.2 103 43-151 171-283 (509)
128 PRK08323 phenylhydantoinase; V 81.1 30 0.00065 31.9 11.7 96 52-152 140-261 (459)
129 cd06545 GH18_3CO4_chitinase Th 81.1 5.2 0.00011 34.4 6.3 72 70-142 46-127 (253)
130 PRK04302 triosephosphate isome 80.4 4.3 9.2E-05 34.5 5.5 70 103-177 74-144 (223)
131 TIGR01740 pyrF orotidine 5'-ph 80.4 15 0.00032 31.1 8.8 42 39-84 9-50 (213)
132 PRK08208 coproporphyrinogen II 80.4 14 0.00031 34.5 9.5 116 27-145 94-223 (430)
133 TIGR03128 RuMP_HxlA 3-hexulose 79.8 14 0.00029 30.5 8.2 68 43-124 69-136 (206)
134 TIGR01515 branching_enzym alph 79.7 4.3 9.4E-05 39.9 6.0 51 104-154 160-230 (613)
135 TIGR00538 hemN oxygen-independ 79.5 12 0.00025 35.3 8.6 107 39-145 117-233 (455)
136 PRK01122 potassium-transportin 79.4 5.9 0.00013 39.9 6.9 71 68-154 446-519 (679)
137 PF05913 DUF871: Bacterial pro 79.1 3.2 7E-05 38.6 4.7 58 83-151 3-68 (357)
138 PRK14010 potassium-transportin 79.0 6.4 0.00014 39.6 7.1 72 67-154 441-515 (673)
139 PLN03228 methylthioalkylmalate 78.7 3.4 7.3E-05 40.2 4.9 87 54-142 182-280 (503)
140 PRK12313 glycogen branching en 78.6 5.2 0.00011 39.4 6.2 51 103-153 173-243 (633)
141 PRK15452 putative protease; Pr 78.5 10 0.00022 36.3 7.9 88 39-142 12-107 (443)
142 TIGR00542 hxl6Piso_put hexulos 78.4 33 0.00071 29.5 10.5 108 42-149 17-152 (279)
143 PRK13209 L-xylulose 5-phosphat 78.4 13 0.00028 31.9 8.0 106 42-150 25-158 (283)
144 TIGR02631 xylA_Arthro xylose i 78.4 5.3 0.00011 37.3 5.9 45 102-146 33-84 (382)
145 cd00946 FBP_aldolase_IIA Class 78.4 11 0.00024 35.1 8.0 79 72-156 76-167 (345)
146 cd01011 nicotinamidase Nicotin 78.3 8.2 0.00018 32.1 6.5 65 75-146 129-195 (196)
147 cd06542 GH18_EndoS-like Endo-b 78.3 16 0.00035 31.1 8.5 95 47-142 21-140 (255)
148 cd01314 D-HYD D-hydantoinases 78.1 34 0.00074 31.5 11.1 94 54-152 144-263 (447)
149 PRK13306 ulaD 3-keto-L-gulonat 78.1 6.1 0.00013 33.9 5.8 95 39-146 14-109 (216)
150 PRK02227 hypothetical protein; 78.0 10 0.00023 33.7 7.4 105 41-146 68-183 (238)
151 PRK05927 hypothetical protein; 77.9 30 0.00064 32.0 10.6 91 57-148 96-203 (350)
152 cd04725 OMP_decarboxylase_like 77.8 11 0.00025 31.9 7.4 94 39-144 9-103 (216)
153 cd02801 DUS_like_FMN Dihydrour 77.5 15 0.00032 30.5 7.9 97 40-142 66-181 (231)
154 PRK06294 coproporphyrinogen II 77.5 15 0.00033 33.7 8.5 113 28-144 62-184 (370)
155 PF03644 Glyco_hydro_85: Glyco 77.3 6.4 0.00014 35.8 6.0 68 51-121 26-106 (311)
156 KOG3349 Predicted glycosyltran 77.2 3 6.5E-05 35.4 3.5 61 82-146 4-65 (170)
157 cd02810 DHOD_DHPD_FMN Dihydroo 77.0 15 0.00033 31.9 8.0 79 41-125 111-200 (289)
158 cd02911 arch_FMN Archeal FMN-b 76.6 25 0.00055 30.4 9.3 91 40-140 84-189 (233)
159 PRK15447 putative protease; Pr 76.4 14 0.0003 33.2 7.8 90 42-147 16-111 (301)
160 cd01315 L-HYD_ALN L-Hydantoina 76.4 53 0.0012 30.2 11.9 124 23-151 81-262 (447)
161 smart00518 AP2Ec AP endonuclea 76.3 28 0.00061 29.6 9.4 83 43-125 12-108 (273)
162 TIGR03470 HpnH hopanoid biosyn 75.8 6.5 0.00014 35.4 5.6 68 71-141 150-227 (318)
163 PRK08649 inosine 5-monophospha 75.8 9.4 0.0002 35.6 6.8 97 70-180 118-220 (368)
164 PRK08207 coproporphyrinogen II 75.7 17 0.00038 35.0 8.8 119 27-145 221-351 (488)
165 TIGR01037 pyrD_sub1_fam dihydr 75.2 31 0.00067 30.3 9.6 76 42-125 107-193 (300)
166 PRK09441 cytoplasmic alpha-amy 75.1 7.3 0.00016 36.9 6.0 52 103-154 24-105 (479)
167 PRK07360 FO synthase subunit 2 74.9 38 0.00083 31.2 10.5 109 39-148 92-219 (371)
168 PRK10785 maltodextrin glucosid 74.8 8.8 0.00019 37.7 6.6 52 103-154 181-250 (598)
169 PRK00915 2-isopropylmalate syn 74.8 5.9 0.00013 38.3 5.3 87 54-142 93-190 (513)
170 PLN02447 1,4-alpha-glucan-bran 74.6 7.4 0.00016 39.8 6.2 52 104-155 254-325 (758)
171 smart00518 AP2Ec AP endonuclea 74.4 9.2 0.0002 32.6 5.9 45 102-146 11-61 (273)
172 PRK06015 keto-hydroxyglutarate 74.3 4.3 9.3E-05 35.0 3.9 42 68-122 82-125 (201)
173 TIGR02104 pulA_typeI pullulana 74.3 6.9 0.00015 38.4 5.7 53 102-154 165-253 (605)
174 cd02072 Glm_B12_BD B12 binding 74.0 9.6 0.00021 30.7 5.6 95 39-146 15-111 (128)
175 PTZ00331 alpha/beta hydrolase; 73.8 11 0.00023 32.0 6.1 65 77-148 139-205 (212)
176 TIGR01210 conserved hypothetic 73.8 13 0.00029 33.4 7.1 99 42-150 54-175 (313)
177 PHA02754 hypothetical protein; 73.8 2.4 5.3E-05 30.6 1.8 20 40-59 20-39 (67)
178 cd01948 EAL EAL domain. This d 73.7 9.7 0.00021 31.0 5.7 80 22-118 142-227 (240)
179 TIGR01182 eda Entner-Doudoroff 73.7 8.1 0.00018 33.3 5.4 40 70-122 88-129 (204)
180 PRK12677 xylose isomerase; Pro 73.5 6.8 0.00015 36.6 5.3 46 102-147 32-84 (384)
181 PRK14024 phosphoribosyl isomer 73.3 11 0.00023 32.6 6.1 112 25-153 75-200 (241)
182 PLN02389 biotin synthase 73.2 27 0.00059 32.6 9.2 69 70-147 153-230 (379)
183 PRK07259 dihydroorotate dehydr 73.0 27 0.00059 30.7 8.7 78 41-125 104-193 (301)
184 PRK05985 cytosine deaminase; P 73.0 18 0.00039 32.8 7.8 77 69-149 190-271 (391)
185 TIGR02403 trehalose_treC alpha 72.6 9.6 0.00021 36.9 6.2 54 103-156 29-101 (543)
186 PRK09997 hydroxypyruvate isome 72.6 35 0.00076 29.0 9.1 75 72-149 42-143 (258)
187 PF13380 CoA_binding_2: CoA bi 72.0 6.8 0.00015 30.2 4.2 42 100-147 65-106 (116)
188 PRK08508 biotin synthase; Prov 71.9 29 0.00062 30.7 8.6 68 70-148 75-155 (279)
189 TIGR02127 pyrF_sub2 orotidine 71.9 27 0.00058 31.1 8.4 94 41-142 41-139 (261)
190 PRK10933 trehalose-6-phosphate 71.6 9.6 0.00021 37.2 6.0 53 103-155 35-106 (551)
191 cd01299 Met_dep_hydrolase_A Me 71.3 14 0.00031 32.3 6.6 12 23-34 53-64 (342)
192 TIGR01497 kdpB K+-transporting 71.3 13 0.00029 37.5 7.0 71 68-154 447-520 (675)
193 TIGR03234 OH-pyruv-isom hydrox 71.3 26 0.00057 29.6 8.0 77 72-150 41-143 (254)
194 PRK13307 bifunctional formalde 71.2 17 0.00037 34.4 7.4 97 39-148 183-281 (391)
195 cd02803 OYE_like_FMN_family Ol 71.2 4.4 9.6E-05 35.8 3.4 71 70-142 192-279 (327)
196 PRK13210 putative L-xylulose 5 71.2 25 0.00053 30.0 7.8 82 69-150 51-153 (284)
197 PRK09505 malS alpha-amylase; R 71.1 9.7 0.00021 38.4 6.0 54 103-156 232-318 (683)
198 TIGR03700 mena_SCO4494 putativ 71.0 57 0.0012 29.7 10.6 88 61-148 103-206 (351)
199 PRK12568 glycogen branching en 70.9 9.8 0.00021 38.8 6.0 52 103-154 272-343 (730)
200 COG0296 GlgB 1,4-alpha-glucan 70.8 9.9 0.00021 38.2 6.0 91 48-147 115-231 (628)
201 PRK05402 glycogen branching en 70.6 9.8 0.00021 38.3 5.9 51 102-152 267-337 (726)
202 TIGR00973 leuA_bact 2-isopropy 70.4 15 0.00034 35.4 7.0 87 54-142 90-187 (494)
203 TIGR00977 LeuA_rel 2-isopropyl 70.3 8.6 0.00019 37.5 5.3 89 73-164 125-225 (526)
204 cd02810 DHOD_DHPD_FMN Dihydroo 70.2 6.9 0.00015 34.0 4.3 75 102-181 112-203 (289)
205 PRK08599 coproporphyrinogen II 70.1 27 0.00059 31.8 8.3 104 39-145 66-182 (377)
206 TIGR02617 tnaA_trp_ase tryptop 69.9 18 0.00038 35.3 7.3 100 39-142 168-293 (467)
207 cd07947 DRE_TIM_Re_CS Clostrid 69.9 8 0.00017 34.6 4.7 136 41-190 78-249 (279)
208 TIGR01501 MthylAspMutase methy 69.8 13 0.00028 30.1 5.5 95 39-146 17-113 (134)
209 COG2008 GLY1 Threonine aldolas 69.6 11 0.00024 35.3 5.6 87 25-121 99-197 (342)
210 cd03413 CbiK_C Anaerobic cobal 69.6 19 0.00041 27.5 6.1 84 59-149 6-98 (103)
211 COG1038 PycA Pyruvate carboxyl 69.2 6 0.00013 41.4 4.1 68 72-148 69-138 (1149)
212 PF03740 PdxJ: Pyridoxal phosp 69.0 6.8 0.00015 34.9 4.0 76 67-152 108-194 (239)
213 PRK05301 pyrroloquinoline quin 69.0 12 0.00027 33.9 5.8 70 66-145 45-116 (378)
214 PRK13745 anaerobic sulfatase-m 68.9 25 0.00054 32.6 7.9 97 39-146 49-169 (412)
215 PF02811 PHP: PHP domain; Int 68.4 10 0.00022 29.5 4.5 52 98-154 13-64 (175)
216 PRK09389 (R)-citramalate synth 68.3 10 0.00023 36.5 5.4 96 42-142 78-184 (488)
217 PRK00230 orotidine 5'-phosphat 68.2 19 0.0004 31.0 6.5 74 39-121 13-87 (230)
218 PRK13758 anaerobic sulfatase-m 68.1 28 0.00062 31.3 7.9 56 56-122 60-123 (370)
219 cd00598 GH18_chitinase-like Th 67.9 25 0.00054 28.5 6.9 120 2-142 2-136 (210)
220 TIGR00238 KamA family protein. 67.7 47 0.001 30.2 9.3 98 41-146 145-253 (331)
221 TIGR03217 4OH_2_O_val_ald 4-hy 67.6 55 0.0012 30.0 9.7 38 107-146 93-130 (333)
222 PRK13813 orotidine 5'-phosphat 67.6 22 0.00048 29.6 6.7 118 43-187 73-201 (215)
223 PLN02960 alpha-amylase 67.5 13 0.00029 38.8 6.3 51 104-154 420-490 (897)
224 PRK14706 glycogen branching en 67.5 12 0.00025 37.5 5.7 51 103-153 170-240 (639)
225 TIGR01769 GGGP geranylgeranylg 66.5 18 0.0004 31.2 6.0 49 103-152 13-62 (205)
226 cd00740 MeTr MeTr subgroup of 66.5 81 0.0018 27.7 10.2 93 42-137 31-144 (252)
227 COG4130 Predicted sugar epimer 66.2 9.2 0.0002 34.4 4.2 46 101-146 17-65 (272)
228 cd06564 GH20_DspB_LnbB-like Gl 66.1 16 0.00035 32.9 5.9 29 125-153 77-105 (326)
229 cd00429 RPE Ribulose-5-phospha 66.1 57 0.0012 26.4 8.7 97 39-151 10-113 (211)
230 cd03321 mandelate_racemase Man 66.1 10 0.00022 34.4 4.7 62 24-95 236-300 (355)
231 PF01081 Aldolase: KDPG and KH 66.1 5.3 0.00011 34.3 2.6 39 70-121 88-128 (196)
232 TIGR02026 BchE magnesium-proto 65.8 61 0.0013 31.0 10.0 90 54-149 240-342 (497)
233 PF00150 Cellulase: Cellulase 65.8 12 0.00026 31.3 4.7 49 102-150 22-82 (281)
234 PRK07114 keto-hydroxyglutarate 65.8 8.4 0.00018 33.6 3.9 67 69-153 98-168 (222)
235 PRK09240 thiH thiamine biosynt 65.8 64 0.0014 29.8 9.8 97 39-146 105-219 (371)
236 PRK06846 putative deaminase; V 65.6 30 0.00065 31.7 7.7 74 70-148 206-285 (410)
237 TIGR02401 trehalose_TreY malto 65.6 14 0.00031 38.3 6.0 53 102-154 17-89 (825)
238 PRK09234 fbiC FO synthase; Rev 65.6 35 0.00076 35.4 8.8 90 58-148 578-684 (843)
239 PLN00196 alpha-amylase; Provis 65.5 15 0.00033 34.9 5.8 54 103-156 46-118 (428)
240 PRK03705 glycogen debranching 65.4 11 0.00025 37.7 5.2 49 106-154 184-266 (658)
241 TIGR00736 nifR3_rel_arch TIM-b 65.0 33 0.0007 30.1 7.4 97 68-180 53-174 (231)
242 COG4724 Endo-beta-N-acetylgluc 64.9 27 0.00058 34.0 7.3 111 33-146 90-222 (553)
243 PRK09856 fructoselysine 3-epim 64.9 87 0.0019 26.6 10.2 81 70-150 47-149 (275)
244 TIGR02100 glgX_debranch glycog 64.8 13 0.00027 37.5 5.4 49 106-154 189-269 (688)
245 PF00857 Isochorismatase: Isoc 64.3 8.4 0.00018 30.4 3.4 79 56-147 90-170 (174)
246 cd04731 HisF The cyclase subun 64.3 24 0.00053 29.9 6.4 104 39-154 82-204 (243)
247 COG1891 Uncharacterized protei 64.2 7.9 0.00017 33.9 3.3 75 57-141 154-232 (235)
248 TIGR00559 pdxJ pyridoxine 5'-p 64.0 29 0.00063 31.0 6.9 71 68-148 108-187 (237)
249 PLN02361 alpha-amylase 63.8 18 0.00038 34.3 5.9 53 102-154 30-100 (401)
250 PRK01130 N-acetylmannosamine-6 63.7 12 0.00026 31.4 4.4 66 104-174 78-146 (221)
251 cd00331 IGPS Indole-3-glycerol 63.6 24 0.00053 29.4 6.2 83 68-164 106-196 (217)
252 PRK05581 ribulose-phosphate 3- 63.6 71 0.0015 26.3 8.9 104 30-150 6-116 (220)
253 PF00563 EAL: EAL domain; Int 63.5 11 0.00025 30.5 4.1 77 22-118 144-228 (236)
254 cd07944 DRE_TIM_HOA_like 4-hyd 63.4 64 0.0014 28.4 9.0 94 41-146 23-125 (266)
255 PLN02951 Molybderin biosynthes 63.2 79 0.0017 29.3 10.0 118 24-146 105-231 (373)
256 cd04729 NanE N-acetylmannosami 62.9 48 0.001 27.8 7.9 66 105-175 83-151 (219)
257 TIGR03821 AblA_like_1 lysine-2 62.6 69 0.0015 29.1 9.3 97 43-147 161-268 (321)
258 TIGR01647 ATPase-IIIA_H plasma 62.5 14 0.00031 37.3 5.3 77 67-154 442-546 (755)
259 PRK15122 magnesium-transportin 62.4 16 0.00034 37.9 5.7 76 68-154 551-649 (903)
260 cd02932 OYE_YqiM_FMN Old yello 62.3 9.8 0.00021 34.3 3.8 41 102-142 242-288 (336)
261 cd06565 GH20_GcnA-like Glycosy 62.2 20 0.00043 32.1 5.7 67 66-152 13-82 (301)
262 TIGR02456 treS_nterm trehalose 62.1 21 0.00045 34.5 6.2 51 104-154 31-100 (539)
263 PRK09058 coproporphyrinogen II 62.1 27 0.00059 33.0 6.8 116 27-145 117-245 (449)
264 cd07941 DRE_TIM_LeuA3 Desulfob 62.0 87 0.0019 27.5 9.6 20 42-63 24-43 (273)
265 PRK14705 glycogen branching en 61.8 18 0.0004 39.0 6.2 48 103-150 768-835 (1224)
266 PRK08444 hypothetical protein; 61.8 1.2E+02 0.0025 28.1 10.8 95 54-148 97-207 (353)
267 TIGR02402 trehalose_TreZ malto 61.8 19 0.00041 35.1 5.8 49 106-154 116-184 (542)
268 TIGR03822 AblA_like_2 lysine-2 61.5 73 0.0016 28.8 9.2 30 54-83 137-166 (321)
269 PRK09248 putative hydrolase; V 61.4 21 0.00046 30.5 5.6 45 72-118 174-218 (246)
270 PRK07572 cytosine deaminase; V 61.3 60 0.0013 30.0 8.8 74 70-148 191-270 (426)
271 smart00052 EAL Putative diguan 61.0 28 0.0006 28.3 6.0 77 22-118 143-228 (241)
272 TIGR00433 bioB biotin syntheta 60.8 38 0.00082 29.4 7.1 17 128-144 185-201 (296)
273 PRK02261 methylaspartate mutas 60.6 19 0.0004 28.9 4.7 44 102-145 70-114 (137)
274 PRK15108 biotin synthase; Prov 60.6 79 0.0017 28.9 9.4 68 70-148 111-189 (345)
275 COG2216 KdpB High-affinity K+ 60.5 16 0.00035 36.6 5.0 57 72-146 452-512 (681)
276 cd02871 GH18_chitinase_D-like 60.4 24 0.00052 31.6 5.9 57 68-124 58-120 (312)
277 cd00950 DHDPS Dihydrodipicolin 60.3 18 0.0004 31.4 5.0 78 68-146 19-98 (284)
278 cd01293 Bact_CD Bacterial cyto 60.0 25 0.00055 31.0 5.9 76 68-148 187-268 (398)
279 PRK14511 maltooligosyl trehalo 59.9 21 0.00046 37.3 6.1 53 102-154 21-93 (879)
280 TIGR00612 ispG_gcpE 1-hydroxy- 59.8 30 0.00064 32.6 6.5 98 26-132 73-182 (346)
281 cd01297 D-aminoacylase D-amino 59.8 1.1E+02 0.0025 28.1 10.4 93 54-152 181-283 (415)
282 COG0284 PyrF Orotidine-5'-phos 59.1 11 0.00023 33.4 3.3 84 26-114 14-115 (240)
283 PF05913 DUF871: Bacterial pro 58.5 13 0.00027 34.8 3.9 92 40-146 13-114 (357)
284 PLN03059 beta-galactosidase; P 58.4 19 0.00041 37.5 5.4 49 100-148 58-116 (840)
285 cd01012 YcaC_related YcaC rela 58.3 43 0.00093 26.6 6.5 93 42-148 52-147 (157)
286 cd04740 DHOD_1B_like Dihydroor 58.3 1E+02 0.0022 27.0 9.3 78 41-125 102-190 (296)
287 PRK11059 regulatory protein Cs 58.2 29 0.00063 33.8 6.4 79 22-118 543-628 (640)
288 PLN02321 2-isopropylmalate syn 57.9 22 0.00047 35.8 5.6 85 56-142 185-281 (632)
289 PRK08417 dihydroorotase; Provi 57.9 1.5E+02 0.0033 27.1 12.5 29 126-154 202-230 (386)
290 PF04405 ScdA_N: Domain of Unk 57.6 29 0.00064 24.0 4.7 39 74-113 14-55 (56)
291 COG2102 Predicted ATPases of P 57.4 1.1E+02 0.0023 27.2 9.2 95 41-149 76-179 (223)
292 PRK05799 coproporphyrinogen II 57.4 78 0.0017 28.7 8.8 116 27-145 54-181 (374)
293 cd03319 L-Ala-DL-Glu_epimerase 57.4 23 0.00051 31.3 5.3 65 24-98 227-294 (316)
294 cd00854 NagA N-acetylglucosami 57.3 18 0.00039 33.0 4.6 62 21-91 118-194 (374)
295 COG1237 Metal-dependent hydrol 57.2 81 0.0017 28.6 8.6 70 41-125 181-256 (259)
296 cd04885 ACT_ThrD-I Tandem C-te 57.2 23 0.0005 24.3 4.2 46 100-146 9-66 (68)
297 cd06564 GH20_DspB_LnbB-like Gl 56.9 58 0.0013 29.3 7.8 69 63-142 75-149 (326)
298 PF09587 PGA_cap: Bacterial ca 56.7 30 0.00064 29.7 5.7 44 103-146 64-108 (250)
299 PRK07329 hypothetical protein; 56.7 32 0.00069 29.7 5.9 76 69-147 164-243 (246)
300 TIGR02666 moaA molybdenum cofa 56.7 62 0.0014 28.8 7.9 100 42-146 75-185 (334)
301 TIGR03471 HpnJ hopanoid biosyn 56.7 1.4E+02 0.003 28.1 10.6 88 54-150 246-343 (472)
302 PRK10517 magnesium-transportin 56.6 21 0.00045 37.0 5.4 76 68-154 551-649 (902)
303 TIGR02493 PFLA pyruvate format 56.5 11 0.00025 31.5 3.0 48 39-87 47-98 (235)
304 PRK13523 NADPH dehydrogenase N 56.4 78 0.0017 29.0 8.6 17 71-87 82-98 (337)
305 PF14871 GHL6: Hypothetical gl 56.3 34 0.00074 27.3 5.6 50 103-152 2-66 (132)
306 TIGR03822 AblA_like_2 lysine-2 56.1 70 0.0015 28.9 8.2 117 24-146 135-261 (321)
307 cd06522 GH25_AtlA-like AtlA is 56.1 76 0.0017 26.3 7.9 92 48-146 22-126 (192)
308 COG3367 Uncharacterized conser 56.0 34 0.00074 32.1 6.2 139 41-195 58-245 (339)
309 cd00003 PNPsynthase Pyridoxine 55.2 51 0.0011 29.4 6.9 72 67-148 107-187 (234)
310 TIGR01524 ATPase-IIIB_Mg magne 55.2 25 0.00054 36.2 5.7 76 68-154 516-614 (867)
311 TIGR02351 thiH thiazole biosyn 55.1 62 0.0013 29.8 7.8 97 39-146 104-218 (366)
312 cd06525 GH25_Lyc-like Lyc mura 55.1 21 0.00045 29.3 4.2 88 54-146 24-120 (184)
313 COG0535 Predicted Fe-S oxidore 55.0 1.1E+02 0.0024 26.4 9.0 93 43-145 56-160 (347)
314 PLN02428 lipoic acid synthase 54.9 35 0.00077 31.8 6.2 72 70-146 231-317 (349)
315 TIGR00735 hisF imidazoleglycer 54.8 39 0.00084 29.2 6.1 115 26-153 75-209 (254)
316 PRK05481 lipoyl synthase; Prov 54.8 41 0.00089 30.0 6.4 44 72-120 182-230 (289)
317 cd04740 DHOD_1B_like Dihydroor 54.8 35 0.00075 29.9 5.9 46 102-147 103-158 (296)
318 TIGR02109 PQQ_syn_pqqE coenzym 54.7 34 0.00074 30.7 5.9 70 66-145 36-107 (358)
319 COG1060 ThiH Thiamine biosynth 54.6 16 0.00034 34.3 3.9 123 17-154 46-182 (370)
320 PF01136 Peptidase_U32: Peptid 54.4 27 0.00059 29.2 5.0 37 102-148 3-41 (233)
321 COG0821 gcpE 1-hydroxy-2-methy 54.4 46 0.001 31.4 6.8 93 26-127 75-179 (361)
322 PRK14510 putative bifunctional 54.1 24 0.00052 38.0 5.5 52 105-156 191-273 (1221)
323 PRK06552 keto-hydroxyglutarate 54.0 18 0.00039 31.2 3.9 39 69-120 95-135 (213)
324 TIGR00510 lipA lipoate synthas 53.7 44 0.00095 30.4 6.5 104 39-148 125-240 (302)
325 cd01297 D-aminoacylase D-amino 53.4 75 0.0016 29.3 8.1 44 103-146 169-215 (415)
326 PRK11145 pflA pyruvate formate 53.2 39 0.00085 28.6 5.8 47 39-86 52-102 (246)
327 PRK07998 gatY putative fructos 53.2 68 0.0015 29.1 7.5 108 42-157 5-142 (283)
328 PRK11145 pflA pyruvate formate 53.2 42 0.00091 28.4 6.0 50 83-137 73-122 (246)
329 PF03447 NAD_binding_3: Homose 53.2 14 0.00031 27.7 2.8 48 101-149 70-117 (117)
330 PRK10551 phage resistance prot 53.1 69 0.0015 30.9 8.0 99 43-155 370-478 (518)
331 cd06570 GH20_chitobiase-like_1 53.1 38 0.00082 30.8 5.9 28 126-153 64-91 (311)
332 cd02930 DCR_FMN 2,4-dienoyl-Co 53.0 83 0.0018 28.6 8.2 16 71-86 78-93 (353)
333 PRK05718 keto-hydroxyglutarate 52.7 17 0.00038 31.3 3.6 56 74-142 7-63 (212)
334 COG0635 HemN Coproporphyrinoge 52.5 30 0.00066 32.6 5.4 90 53-146 87-189 (416)
335 TIGR03581 EF_0839 conserved hy 52.4 1E+02 0.0022 27.6 8.3 101 38-151 90-211 (236)
336 COG1874 LacA Beta-galactosidas 52.3 24 0.00053 35.8 5.0 60 85-148 16-86 (673)
337 PRK05265 pyridoxine 5'-phospha 52.3 61 0.0013 29.0 6.9 71 68-148 111-189 (239)
338 PF13344 Hydrolase_6: Haloacid 52.2 28 0.00062 26.1 4.3 41 104-148 20-60 (101)
339 PRK12928 lipoyl synthase; Prov 52.0 53 0.0011 29.5 6.6 23 123-146 213-235 (290)
340 COG5014 Predicted Fe-S oxidore 52.0 26 0.00057 30.7 4.5 46 102-147 79-124 (228)
341 PRK11858 aksA trans-homoaconit 51.7 28 0.00061 32.2 5.0 42 102-146 27-68 (378)
342 TIGR01496 DHPS dihydropteroate 51.6 1.7E+02 0.0037 25.7 10.7 74 72-145 63-163 (257)
343 cd02742 GH20_hexosaminidase Be 51.4 40 0.00087 30.0 5.8 78 65-153 11-95 (303)
344 PF02449 Glyco_hydro_42: Beta- 51.4 34 0.00073 31.1 5.4 43 102-146 11-63 (374)
345 PRK05985 cytosine deaminase; P 51.2 1.3E+02 0.0027 27.3 9.0 119 24-145 110-235 (391)
346 PRK15447 putative protease; Pr 51.1 46 0.001 29.8 6.2 45 102-146 16-64 (301)
347 PRK09057 coproporphyrinogen II 51.0 92 0.002 28.6 8.2 117 27-144 58-184 (380)
348 PRK13523 NADPH dehydrogenase N 51.0 16 0.00034 33.5 3.2 68 70-142 193-273 (337)
349 cd00947 TBP_aldolase_IIB Tagat 50.8 1E+02 0.0022 27.9 8.2 53 105-157 83-137 (276)
350 cd01299 Met_dep_hydrolase_A Me 50.6 1.7E+02 0.0037 25.5 10.1 92 39-150 118-222 (342)
351 PRK08573 phosphomethylpyrimidi 50.4 37 0.00081 32.0 5.7 56 24-87 46-101 (448)
352 cd02801 DUS_like_FMN Dihydrour 50.3 32 0.00069 28.6 4.7 43 100-142 66-121 (231)
353 PRK15108 biotin synthase; Prov 50.3 29 0.00062 31.8 4.8 73 65-145 74-148 (345)
354 COG0502 BioB Biotin synthase a 49.7 58 0.0013 30.4 6.7 43 104-146 144-195 (335)
355 COG1921 SelA Selenocysteine sy 49.7 23 0.0005 33.8 4.1 67 72-146 176-250 (395)
356 cd07939 DRE_TIM_NifV Streptomy 49.7 32 0.00069 29.8 4.8 40 102-144 21-60 (259)
357 PRK14507 putative bifunctional 49.6 36 0.00077 38.1 6.0 51 102-152 759-829 (1693)
358 TIGR01212 radical SAM protein, 49.5 1.5E+02 0.0032 26.6 9.1 114 26-145 79-208 (302)
359 PRK10076 pyruvate formate lyas 49.4 51 0.0011 28.3 5.9 84 56-146 41-130 (213)
360 PRK05718 keto-hydroxyglutarate 49.3 23 0.00051 30.5 3.8 41 71-124 96-138 (212)
361 PF01373 Glyco_hydro_14: Glyco 49.3 34 0.00073 32.8 5.2 18 103-120 55-72 (402)
362 PRK08898 coproporphyrinogen II 49.1 1E+02 0.0022 28.5 8.2 117 27-144 76-202 (394)
363 PRK09195 gatY tagatose-bisphos 49.1 1E+02 0.0022 28.0 8.0 48 104-153 87-138 (284)
364 PRK10415 tRNA-dihydrouridine s 48.6 41 0.00089 30.4 5.5 81 56-142 105-192 (321)
365 PRK12737 gatY tagatose-bisphos 48.6 52 0.0011 29.8 6.0 50 104-155 87-140 (284)
366 PRK09248 putative hydrolase; V 48.6 46 0.00099 28.4 5.5 44 102-146 141-188 (246)
367 PRK13404 dihydropyrimidinase; 48.5 1.7E+02 0.0038 27.7 9.9 80 67-151 163-266 (477)
368 PRK02083 imidazole glycerol ph 48.4 1.6E+02 0.0034 25.3 8.8 115 25-154 74-208 (253)
369 cd06415 GH25_Cpl1-like Cpl-1 l 48.4 1.3E+02 0.0027 25.0 8.0 91 47-146 17-124 (196)
370 PRK06852 aldolase; Validated 48.3 1E+02 0.0022 28.3 8.0 87 56-148 96-209 (304)
371 cd07940 DRE_TIM_IPMS 2-isoprop 48.2 31 0.00067 30.1 4.5 38 102-142 21-58 (268)
372 TIGR01517 ATPase-IIB_Ca plasma 48.2 36 0.00077 35.3 5.5 68 68-146 580-671 (941)
373 TIGR02826 RNR_activ_nrdG3 anae 48.1 50 0.0011 26.8 5.4 49 39-90 47-97 (147)
374 PRK07328 histidinol-phosphatas 48.1 21 0.00045 31.1 3.4 73 71-146 178-254 (269)
375 PF07894 DUF1669: Protein of u 47.9 13 0.00029 33.9 2.2 85 20-120 112-203 (284)
376 smart00636 Glyco_18 Glycosyl h 47.9 68 0.0015 28.3 6.7 50 72-122 54-115 (334)
377 cd04739 DHOD_like Dihydroorota 47.8 27 0.00059 31.6 4.2 41 102-142 113-161 (325)
378 cd06563 GH20_chitobiase-like T 47.4 43 0.00094 30.6 5.5 27 126-152 82-108 (357)
379 COG3981 Predicted acetyltransf 47.3 18 0.0004 30.9 2.8 41 82-129 103-145 (174)
380 cd01293 Bact_CD Bacterial cyto 47.3 88 0.0019 27.6 7.3 74 70-145 158-233 (398)
381 TIGR01858 tag_bisphos_ald clas 47.2 56 0.0012 29.5 6.1 52 104-155 85-138 (282)
382 PLN02784 alpha-amylase 47.1 46 0.001 35.0 6.1 55 102-156 522-594 (894)
383 PRK07572 cytosine deaminase; V 47.1 1.3E+02 0.0028 27.8 8.6 120 24-145 110-235 (426)
384 TIGR02090 LEU1_arch isopropylm 47.0 34 0.00074 31.5 4.8 42 102-146 23-64 (363)
385 KOG4175 Tryptophan synthase al 47.0 89 0.0019 28.0 7.0 77 72-155 82-160 (268)
386 COG0119 LeuA Isopropylmalate/h 46.9 45 0.00097 31.7 5.6 71 70-142 117-187 (409)
387 COG0800 Eda 2-keto-3-deoxy-6-p 46.7 23 0.00049 31.1 3.3 71 28-125 65-137 (211)
388 PF00563 EAL: EAL domain; Int 46.3 22 0.00047 28.8 3.0 99 41-149 106-209 (236)
389 COG3589 Uncharacterized conser 46.2 44 0.00094 31.6 5.3 17 102-118 50-66 (360)
390 TIGR02660 nifV_homocitr homoci 46.0 37 0.00079 31.2 4.8 41 102-145 24-64 (365)
391 PRK09389 (R)-citramalate synth 46.0 35 0.00075 33.0 4.8 41 102-145 25-65 (488)
392 PRK07369 dihydroorotase; Provi 45.8 2.6E+02 0.0056 26.2 12.1 63 24-88 87-153 (418)
393 PF14098 SSPI: Small, acid-sol 45.7 52 0.0011 23.9 4.5 32 68-99 15-49 (65)
394 cd02809 alpha_hydroxyacid_oxid 45.6 24 0.00052 31.4 3.4 74 99-177 127-203 (299)
395 PRK07213 chlorohydrolase; Prov 45.5 1.5E+02 0.0033 26.8 8.7 78 66-154 175-262 (375)
396 cd00945 Aldolase_Class_I Class 45.5 1.5E+02 0.0032 23.3 8.3 75 70-147 35-117 (201)
397 PLN02803 beta-amylase 45.4 47 0.001 33.1 5.6 68 81-148 83-162 (548)
398 PRK07259 dihydroorotate dehydr 45.3 35 0.00075 30.1 4.4 41 102-142 105-155 (301)
399 cd04738 DHOD_2_like Dihydrooro 45.2 1.6E+02 0.0034 26.6 8.6 79 41-127 148-242 (327)
400 COG0439 AccC Biotin carboxylas 45.2 47 0.001 32.1 5.5 97 31-142 79-187 (449)
401 PLN00197 beta-amylase; Provisi 45.2 47 0.001 33.2 5.6 68 81-148 103-182 (573)
402 PLN02801 beta-amylase 44.9 47 0.001 32.8 5.5 47 100-146 36-90 (517)
403 PF08901 DUF1847: Protein of u 44.9 36 0.00077 28.7 4.1 76 69-146 7-84 (157)
404 cd00408 DHDPS-like Dihydrodipi 44.9 52 0.0011 28.4 5.4 28 118-145 67-94 (281)
405 PRK09490 metH B12-dependent me 44.8 2.2E+02 0.0049 31.1 10.9 98 46-146 393-519 (1229)
406 PRK00366 ispG 4-hydroxy-3-meth 44.7 57 0.0012 30.9 5.8 85 46-132 94-191 (360)
407 TIGR00742 yjbN tRNA dihydrouri 44.5 67 0.0015 29.2 6.2 82 57-142 96-192 (318)
408 PRK00278 trpC indole-3-glycero 44.5 50 0.0011 29.0 5.2 67 107-180 126-193 (260)
409 PRK13586 1-(5-phosphoribosyl)- 44.5 64 0.0014 28.0 5.8 89 39-137 84-186 (232)
410 COG0621 MiaB 2-methylthioadeni 44.4 95 0.0021 30.0 7.4 101 41-146 212-328 (437)
411 TIGR01768 GGGP-family geranylg 44.2 54 0.0012 28.8 5.3 49 102-151 15-63 (223)
412 PRK03170 dihydrodipicolinate s 44.2 53 0.0011 28.8 5.3 26 120-145 73-98 (292)
413 PRK10992 iron-sulfur cluster r 43.9 71 0.0015 27.6 6.0 59 75-136 18-79 (220)
414 PRK07374 dnaE DNA polymerase I 43.7 41 0.00089 36.2 5.3 49 96-148 14-63 (1170)
415 PRK06582 coproporphyrinogen II 43.7 1.3E+02 0.0028 28.0 8.0 114 26-143 64-190 (390)
416 cd07948 DRE_TIM_HCS Saccharomy 43.6 1.2E+02 0.0027 26.7 7.5 92 41-146 25-128 (262)
417 PRK12857 fructose-1,6-bisphosp 43.4 1.5E+02 0.0033 26.8 8.2 47 105-153 88-138 (284)
418 KOG1615 Phosphoserine phosphat 43.3 35 0.00075 30.3 3.9 89 65-164 88-191 (227)
419 PRK05673 dnaE DNA polymerase I 43.2 42 0.00091 36.0 5.3 50 95-148 12-62 (1135)
420 PRK09234 fbiC FO synthase; Rev 43.2 80 0.0017 32.9 7.1 114 23-143 571-708 (843)
421 PRK13361 molybdenum cofactor b 43.2 1.7E+02 0.0037 26.2 8.5 102 41-146 76-186 (329)
422 COG0366 AmyA Glycosidases [Car 43.0 53 0.0011 30.0 5.3 52 105-156 33-103 (505)
423 PRK15446 phosphonate metabolis 43.0 58 0.0013 30.0 5.6 62 67-147 211-272 (383)
424 PRK12394 putative metallo-depe 42.8 47 0.001 30.2 4.9 47 41-87 142-190 (379)
425 PRK13561 putative diguanylate 42.8 69 0.0015 30.9 6.3 94 22-133 544-644 (651)
426 PRK12581 oxaloacetate decarbox 42.6 53 0.0011 32.0 5.4 118 27-148 18-150 (468)
427 PRK11440 putative hydrolase; P 42.5 80 0.0017 25.7 5.9 74 56-142 99-174 (188)
428 cd04886 ACT_ThrD-II-like C-ter 42.5 92 0.002 20.1 5.9 46 102-147 11-72 (73)
429 COG2200 Rtn c-di-GMP phosphodi 42.4 1E+02 0.0022 26.8 6.7 84 56-153 121-215 (256)
430 cd03318 MLE Muconate Lactonizi 41.8 37 0.00079 30.7 4.1 63 24-96 238-303 (365)
431 TIGR03239 GarL 2-dehydro-3-deo 41.8 53 0.0012 28.8 5.0 60 105-164 24-86 (249)
432 PRK09059 dihydroorotase; Valid 41.8 3E+02 0.0065 25.8 10.3 126 22-153 88-265 (429)
433 PRK06267 hypothetical protein; 41.7 84 0.0018 28.8 6.4 82 53-148 79-171 (350)
434 COG1243 ELP3 Histone acetyltra 41.6 2.9E+02 0.0063 27.5 10.2 129 24-158 106-262 (515)
435 PRK10558 alpha-dehydro-beta-de 41.6 47 0.001 29.3 4.6 81 72-164 10-93 (256)
436 PRK01130 N-acetylmannosamine-6 41.6 65 0.0014 27.0 5.3 84 70-164 105-197 (221)
437 TIGR01211 ELP3 histone acetylt 41.6 1.1E+02 0.0023 30.2 7.4 97 39-141 150-280 (522)
438 cd03324 rTSbeta_L-fuconate_deh 41.5 41 0.00089 31.7 4.5 85 39-130 305-407 (415)
439 PRK02261 methylaspartate mutas 41.5 65 0.0014 25.7 5.0 42 102-144 42-83 (137)
440 TIGR03092 SASP_sspI small, aci 41.5 68 0.0015 23.4 4.6 32 68-99 14-48 (65)
441 cd02549 Peptidase_C39A A sub-f 41.3 71 0.0015 23.9 5.0 68 102-188 45-114 (141)
442 PRK06769 hypothetical protein; 41.3 69 0.0015 25.9 5.3 51 65-119 28-79 (173)
443 PF02677 DUF208: Uncharacteriz 41.1 87 0.0019 26.7 6.0 84 72-161 44-145 (176)
444 PF09778 Guanylate_cyc_2: Guan 41.0 64 0.0014 28.3 5.3 107 74-190 50-184 (212)
445 PF02065 Melibiase: Melibiase; 40.9 1.1E+02 0.0023 28.9 7.1 85 101-189 58-167 (394)
446 PLN02161 beta-amylase 40.9 58 0.0013 32.3 5.4 68 81-148 89-172 (531)
447 cd02072 Glm_B12_BD B12 binding 40.7 53 0.0012 26.4 4.4 75 42-124 38-117 (128)
448 TIGR01501 MthylAspMutase methy 40.5 56 0.0012 26.4 4.5 88 42-139 40-131 (134)
449 TIGR03552 F420_cofC 2-phospho- 40.5 1.4E+02 0.003 24.0 7.0 113 23-138 63-186 (195)
450 cd06591 GH31_xylosidase_XylS X 40.4 1.3E+02 0.0028 27.0 7.4 78 67-149 21-110 (319)
451 PF00728 Glyco_hydro_20: Glyco 40.3 22 0.00049 31.4 2.4 28 126-153 69-96 (351)
452 smart00854 PGA_cap Bacterial c 40.0 77 0.0017 26.9 5.6 43 104-146 63-106 (239)
453 TIGR01290 nifB nitrogenase cof 39.9 1.1E+02 0.0025 29.0 7.2 97 39-147 61-191 (442)
454 PRK05588 histidinol-phosphatas 39.9 99 0.0021 26.5 6.3 74 70-146 166-243 (255)
455 cd07381 MPP_CapA CapA and rela 39.8 75 0.0016 26.8 5.5 44 103-146 66-110 (239)
456 PRK10550 tRNA-dihydrouridine s 39.7 1E+02 0.0023 27.9 6.6 78 58-142 105-192 (312)
457 TIGR03699 mena_SCO4550 menaqui 39.6 55 0.0012 29.4 4.8 19 66-84 71-89 (340)
458 PF04551 GcpE: GcpE protein; 39.6 69 0.0015 30.3 5.6 82 51-132 92-191 (359)
459 cd00331 IGPS Indole-3-glycerol 39.5 85 0.0018 26.1 5.7 79 83-177 72-151 (217)
460 cd03316 MR_like Mandelate race 39.5 30 0.00064 31.0 3.1 58 24-93 239-301 (357)
461 TIGR02826 RNR_activ_nrdG3 anae 39.4 84 0.0018 25.4 5.4 51 67-124 46-98 (147)
462 PF00704 Glyco_hydro_18: Glyco 39.3 1.1E+02 0.0023 26.7 6.4 49 79-127 69-128 (343)
463 PLN02621 nicotinamidase 39.3 91 0.002 25.8 5.8 78 56-146 105-184 (197)
464 smart00052 EAL Putative diguan 39.3 1.9E+02 0.0041 23.3 7.6 103 42-154 104-213 (241)
465 PF02638 DUF187: Glycosyl hydr 39.2 54 0.0012 29.6 4.7 22 129-150 69-90 (311)
466 PRK04302 triosephosphate isome 39.2 2.4E+02 0.0051 23.9 9.0 82 70-164 101-197 (223)
467 COG0635 HemN Coproporphyrinoge 39.2 48 0.0011 31.3 4.6 116 27-145 90-219 (416)
468 PRK06256 biotin synthase; Vali 39.2 69 0.0015 28.5 5.4 70 72-145 151-231 (336)
469 PLN02705 beta-amylase 39.1 61 0.0013 33.0 5.4 65 84-148 247-323 (681)
470 PRK13587 1-(5-phosphoribosyl)- 39.1 2.2E+02 0.0048 24.6 8.3 116 24-155 75-204 (234)
471 cd04734 OYE_like_3_FMN Old yel 39.1 52 0.0011 30.0 4.6 56 70-126 192-254 (343)
472 PRK15454 ethanol dehydrogenase 39.1 2.2E+02 0.0049 26.4 8.9 81 63-148 28-111 (395)
473 TIGR03820 lys_2_3_AblA lysine- 39.1 1.9E+02 0.0041 27.8 8.5 104 40-146 140-248 (417)
474 TIGR02668 moaA_archaeal probab 39.0 1E+02 0.0022 27.0 6.3 80 66-145 39-149 (302)
475 PLN02428 lipoic acid synthase 38.9 29 0.00063 32.4 3.0 60 58-121 254-321 (349)
476 PRK14017 galactonate dehydrata 38.7 29 0.00063 31.8 2.9 57 25-93 228-289 (382)
477 PF15632 ATPgrasp_Ter: ATP-gra 38.7 77 0.0017 29.3 5.7 71 67-146 50-122 (329)
478 cd04909 ACT_PDH-BS C-terminal 38.6 64 0.0014 21.6 4.0 17 130-146 53-69 (69)
479 TIGR01522 ATPase-IIA2_Ca golgi 38.5 89 0.0019 32.2 6.6 68 68-146 529-620 (884)
480 PRK06256 biotin synthase; Vali 38.4 75 0.0016 28.3 5.5 68 71-148 127-205 (336)
481 PF13378 MR_MLE_C: Enolase C-t 38.4 36 0.00078 25.2 3.0 54 39-98 6-60 (111)
482 cd01013 isochorismatase Isocho 38.3 82 0.0018 26.3 5.4 73 58-143 122-196 (203)
483 PRK08185 hypothetical protein; 38.1 97 0.0021 28.0 6.1 88 57-155 42-133 (283)
484 TIGR01919 hisA-trpF 1-(5-phosp 38.1 1.2E+02 0.0027 26.4 6.6 103 39-153 85-203 (243)
485 cd01015 CSHase N-carbamoylsarc 38.1 1.1E+02 0.0025 24.6 6.1 80 50-143 87-168 (179)
486 cd08551 Fe-ADH iron-containing 37.9 2.1E+02 0.0045 26.0 8.3 72 69-146 8-83 (370)
487 TIGR01106 ATPase-IIC_X-K sodiu 37.7 96 0.0021 32.5 6.8 24 123-146 663-686 (997)
488 PRK06801 hypothetical protein; 37.7 92 0.002 28.2 5.9 105 42-152 5-137 (286)
489 PRK10319 N-acetylmuramoyl-l-al 37.7 1.8E+02 0.0038 26.4 7.7 45 102-150 90-134 (287)
490 cd00019 AP2Ec AP endonuclease 37.6 1.8E+02 0.0039 24.9 7.5 82 68-149 43-142 (279)
491 PF00701 DHDPS: Dihydrodipicol 37.6 81 0.0018 27.5 5.5 40 102-141 23-65 (289)
492 cd06414 GH25_LytC-like The Lyt 37.6 2.2E+02 0.0048 23.4 7.8 89 50-146 21-129 (191)
493 COG1712 Predicted dinucleotide 37.5 68 0.0015 29.0 4.9 78 64-146 29-115 (255)
494 PTZ00413 lipoate synthase; Pro 37.5 34 0.00075 32.7 3.3 59 83-146 294-365 (398)
495 PF09370 TIM-br_sig_trns: TIM- 37.3 91 0.002 28.4 5.8 63 102-164 96-172 (268)
496 PF10566 Glyco_hydro_97: Glyco 37.2 1.3E+02 0.0028 27.3 6.7 76 66-146 69-153 (273)
497 cd01294 DHOase Dihydroorotase 37.1 2.4E+02 0.0052 25.1 8.5 119 24-146 29-165 (335)
498 cd02879 GH18_plant_chitinase_c 37.1 99 0.0021 27.4 6.0 64 71-135 52-128 (299)
499 cd03322 rpsA The starvation se 37.1 35 0.00076 31.1 3.2 58 25-92 214-274 (361)
500 PRK02955 small acid-soluble sp 37.0 86 0.0019 23.0 4.6 32 68-99 17-51 (68)
No 1
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=100.00 E-value=6e-63 Score=430.50 Aligned_cols=164 Identities=35% Similarity=0.577 Sum_probs=136.3
Q ss_pred CCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cH
Q 028948 13 EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DW 91 (201)
Q Consensus 13 ~~~~R~~KPR~~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tl 91 (201)
++|+|++|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||+++|++||++||+|||+|||| |+
T Consensus 1 ~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl 76 (244)
T PF02679_consen 1 NLPERPEKPRSRGLTMVIDKGL----GLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTL 76 (244)
T ss_dssp -TTGGG-SS-SSS-EEEEESS------HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHH
T ss_pred CCCCCCCCCCCCCcEEEecCCC----CHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHH
Confidence 4789999999999999999998 888999999999999999999999999999999999999999999999997 79
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC---------------
Q 028948 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK--------------- 156 (201)
Q Consensus 92 fE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~--------------- 156 (201)
||+|++|+ ++++|+++||+|||++|||||||++||+++|+++|++++++||+|+||+|+|...
T Consensus 77 ~E~a~~q~--~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~ 154 (244)
T PF02679_consen 77 FEVAYQQG--KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAK 154 (244)
T ss_dssp HHHHHHTT---HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHH
T ss_pred HHHHHhcC--hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999864
Q ss_pred CCcccccccccccEEEecccCcCeeccccCC
Q 028948 157 SDIPSDRDRAFGAYVARAPRSTDKLFLASNP 187 (201)
Q Consensus 157 ~dl~ag~~~a~g~~Vi~E~Res~~v~~~~~~ 187 (201)
.|++|||+ +||+|+||||+.|+++|-
T Consensus 155 ~dLeAGA~-----~ViiEarEsG~~Gi~~~~ 180 (244)
T PF02679_consen 155 RDLEAGAD-----KVIIEARESGKGGIYDND 180 (244)
T ss_dssp HHHHHTEC-----EEEE--TTT--STTB-TT
T ss_pred HHHHCCCC-----EEEEeeeccCCCCccCCC
Confidence 56888888 999999999999999874
No 2
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=100.00 E-value=2.3e-57 Score=394.00 Aligned_cols=151 Identities=23% Similarity=0.404 Sum_probs=145.0
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHH
Q 028948 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFK 104 (201)
Q Consensus 26 lTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~ 104 (201)
+|||+|||| |+++++|+|++||+|||++||||||++|||+++|||||++||+|||+|||| ||||+|+.|+ +|+
T Consensus 1 lT~v~dkgl----~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~--~~~ 74 (237)
T TIGR03849 1 ITMVLDKGL----PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFD 74 (237)
T ss_pred CceEecCCC----CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhh--hHH
Confidence 699999999 888999999999999999999999999999999999999999999999997 6999999998 999
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC---------------CCccccccccccc
Q 028948 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK---------------SDIPSDRDRAFGA 169 (201)
Q Consensus 105 eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~---------------~dl~ag~~~a~g~ 169 (201)
+|+++||+|||++|||||||++||+++|+++|++++++||+|+||+|+|+.. .||+|||+
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~----- 149 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGAD----- 149 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCc-----
Confidence 9999999999999999999999999999999999999999999999999974 44778888
Q ss_pred EEEecccCcCe-eccccCC
Q 028948 170 YVARAPRSTDK-LFLASNP 187 (201)
Q Consensus 170 ~Vi~E~Res~~-v~~~~~~ 187 (201)
+||+|+||||+ +|+++|-
T Consensus 150 ~ViiEarEsg~~~Gi~~~~ 168 (237)
T TIGR03849 150 YVIIEGRESGKNIGLFDEK 168 (237)
T ss_pred EEEEeehhcCCCcceeCCC
Confidence 99999999999 8999874
No 3
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=380.00 Aligned_cols=168 Identities=26% Similarity=0.455 Sum_probs=159.8
Q ss_pred ccCCC-CCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceec
Q 028948 9 KSFDE-YEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS 87 (201)
Q Consensus 9 ~~f~~-~~~R~~KPR~~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (201)
++|.- .|.||+|||.+|+|+|+|||| |++.++|+|++||+|||++||||||++|.+++++++||++||+|||+||
T Consensus 2 ~aF~f~~~~r~~kPr~~G~T~vldkg~----~p~f~~D~~~vagdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~ 77 (258)
T COG1809 2 NAFEFLPPARPEKPRTFGMTVVLDKGL----GPRFVEDVLKVAGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVF 77 (258)
T ss_pred CcccccCCCCCCCCccCCeEEEEeCCC----ChHHHHHHHHhhhhheeeeeecccccccccHHHHHHHHHHHHHcCceec
Confidence 45664 467999999999999999999 8889999999999999999999999999999999999999999999999
Q ss_pred Cc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------
Q 028948 88 TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK---------- 156 (201)
Q Consensus 88 ~G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~---------- 156 (201)
|| |+||+++.|+ ++++|+++|+++||++|||||||+.|+.++|+++|+++.++||+|+||+|+|.+.
T Consensus 78 pGGtlfe~a~~~~--kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vlsEvGkk~~e~~~~l~~~d~ 155 (258)
T COG1809 78 PGGTLFEIAYSQD--KVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVGKKDPESDSALSPDDR 155 (258)
T ss_pred CCceEEEeehhcc--cHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEehhhcccCcchhhhcChHHH
Confidence 96 7999999999 9999999999999999999999999999999999999999999999999999975
Q ss_pred -----CCcccccccccccEEEecccCcCe-eccccCC
Q 028948 157 -----SDIPSDRDRAFGAYVARAPRSTDK-LFLASNP 187 (201)
Q Consensus 157 -----~dl~ag~~~a~g~~Vi~E~Res~~-v~~~~~~ 187 (201)
.|++||++ |||+||||||+ .|+++|-
T Consensus 156 ~k~i~~dvdaGa~-----~vi~eAresg~~~Gi~~~~ 187 (258)
T COG1809 156 VKLINDDVDAGAE-----YVIAEARESGKEIGITDNE 187 (258)
T ss_pred HHHHHHHHHcchH-----HhhhhhhhhccccCccccc
Confidence 55888888 99999999999 9999985
No 4
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=96.56 E-value=0.0075 Score=55.23 Aligned_cols=90 Identities=20% Similarity=0.440 Sum_probs=69.9
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 028948 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (201)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~eyl~~~k~lGFd~IEISdGti~---- 126 (201)
..|+-+-||+||-++.|.+.|++.++..+++.. .|+.+.-+|+.+ ++.++.++++||+.|.|.--|.+
T Consensus 57 ~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-------~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L 129 (370)
T PRK06294 57 HFIDTVFFGGGTPSLVPPALIQDILKTLEAPHA-------TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLL 129 (370)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHhCCC-------CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHH
Confidence 458999999999999999999999999987622 133333356565 78999999999999988776662
Q ss_pred ------CChhHHHHHHHHHHHCCCe-Ecc
Q 028948 127 ------IPEETLLRYVRLVKSAGLK-AKP 148 (201)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~-v~p 148 (201)
-+.++-.+.|+.+++.||. +..
T Consensus 130 ~~l~R~~~~~~~~~ai~~~~~~g~~~v~~ 158 (370)
T PRK06294 130 KLLGRTHSSSKAIDAVQECSEHGFSNLSI 158 (370)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 3455667789999999996 533
No 5
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.52 E-value=0.0093 Score=54.50 Aligned_cols=149 Identities=12% Similarity=0.056 Sum_probs=106.3
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (201)
.=+++++.||. + ..+|+-.....-+|.+.+.. .....+.+++-|+.+|++|..++.. ++.+....++.+
T Consensus 78 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~---~~~e~~~~~~~i~~ak~~G~~v~~~--l~~a~~~~~e~l 146 (337)
T PRK08195 78 AKIAALLLPGI----G--TVDDLKMAYDAGVRVVRVAT---HCTEADVSEQHIGLARELGMDTVGF--LMMSHMAPPEKL 146 (337)
T ss_pred CEEEEEeccCc----c--cHHHHHHHHHcCCCEEEEEE---ecchHHHHHHHHHHHHHCCCeEEEE--EEeccCCCHHHH
Confidence 45677778875 2 34676666677899999885 3455677999999999999887753 223334455678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEe
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVAR 173 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~ 173 (201)
.++.+.+.++|.+.|-|.|-.-.+.+++-.++|+.++++ +.....+|....+ ..+++|++ +|
T Consensus 147 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H~HnnlGla~ANslaAi~aGa~-----~i-- 218 (337)
T PRK08195 147 AEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAA-LKPDTQVGFHGHNNLGLGVANSLAAVEAGAT-----RI-- 218 (337)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCCeEEEEeCCCcchHHHHHHHHHHhCCC-----EE--
Confidence 888889999999999999999999999999999999976 3222334443321 34677777 44
Q ss_pred cccCcCeeccccCCceee
Q 028948 174 APRSTDKLFLASNPEIEV 191 (201)
Q Consensus 174 E~Res~~v~~~~~~~~~~ 191 (201)
++-=.|.=.-+.|+.+|.
T Consensus 219 D~Sl~GlG~~aGN~~tE~ 236 (337)
T PRK08195 219 DGSLAGLGAGAGNTPLEV 236 (337)
T ss_pred EecChhhcccccCccHHH
Confidence 333333334688888885
No 6
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=96.39 E-value=0.015 Score=52.78 Aligned_cols=88 Identities=19% Similarity=0.379 Sum_probs=68.6
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 028948 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (201)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~eyl~~~k~lGFd~IEISdGti~----- 126 (201)
-|+.|-||+||..+.+.+.+++.++..+++ +.++ .|+.+.-+|+. -++.++.+++.||+.|.|+--|.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~ 125 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY---LSKD--CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLK 125 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh---cCCC--ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 589999999999999999999999999988 2233 24444444543 378999999999999988776662
Q ss_pred -----CChhHHHHHHHHHHHCCCe
Q 028948 127 -----IPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf~ 145 (201)
-+.++-.+.|+.+++.||.
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCC
Confidence 3456667889999999996
No 7
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=96.16 E-value=0.02 Score=52.23 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=106.5
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (201)
.=+++++.||. + ..+|+-.....-||.+-+... ....+.+++-|+.+|+.|..++.. ++.+....|+.+
T Consensus 77 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~d~~~~~i~~ak~~G~~v~~~--l~~s~~~~~e~l 145 (333)
T TIGR03217 77 AKVAVLLLPGI----G--TVHDLKAAYDAGARTVRVATH---CTEADVSEQHIGMARELGMDTVGF--LMMSHMTPPEKL 145 (333)
T ss_pred CEEEEEeccCc----c--CHHHHHHHHHCCCCEEEEEec---cchHHHHHHHHHHHHHcCCeEEEE--EEcccCCCHHHH
Confidence 44788888885 2 345655555567999998863 455577999999999999877642 223334555688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEe
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVAR 173 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~ 173 (201)
-++.+.+.+.|.+.|-|.|-.-.+.+++-.++++.++++ +....++|....+ ..+++|++ +|
T Consensus 146 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H~HnnlGla~ANslaAi~aGa~-----~i-- 217 (333)
T TIGR03217 146 AEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAV-LKPETQVGFHAHHNLSLAVANSIAAIEAGAT-----RI-- 217 (333)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh-CCCCceEEEEeCCCCchHHHHHHHHHHhCCC-----EE--
Confidence 888899999999999999999999999999999999876 3322334444322 34778888 54
Q ss_pred cccCcCeeccccCCceee
Q 028948 174 APRSTDKLFLASNPEIEV 191 (201)
Q Consensus 174 E~Res~~v~~~~~~~~~~ 191 (201)
.+-=.|.=.-+.|+.+|+
T Consensus 218 D~Sl~G~G~~aGN~~~E~ 235 (333)
T TIGR03217 218 DASLRGLGAGAGNAPLEV 235 (333)
T ss_pred EeecccccccccCccHHH
Confidence 333333334688888886
No 8
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.03 E-value=0.014 Score=50.75 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=98.0
Q ss_pred HHHHHhhcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHH
Q 028948 44 EDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (201)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~ 112 (201)
+|+-......+|.+.+...+|-.+.. +.+++-++.++++|..|..+- |.+-...++.+.++.+.+.+
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~ 150 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA--EDASRADPDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee--ccCCCCCHHHHHHHHHHHHH
Confidence 33333344568999998877765432 347789999999999888663 22223445678888889999
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCeec
Q 028948 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKLF 182 (201)
Q Consensus 113 lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v~ 182 (201)
.|.+.|-|.|-.-.+.+++-.++++.+++. +. ..++..+.+ ..+.+|++ + +++-=.|.=.
T Consensus 151 ~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~Hn~~Gla~An~laAi~aG~~-----~--vd~s~~G~G~ 220 (259)
T cd07939 151 AGADRLRFADTVGILDPFTTYELIRRLRAA-TD--LPLEFHAHNDLGLATANTLAAVRAGAT-----H--VSVTVNGLGE 220 (259)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEecCCCChHHHHHHHHHHhCCC-----E--EEEecccccc
Confidence 999999999999999999999999999976 32 234544332 34677777 3 4666666667
Q ss_pred cccCCceee
Q 028948 183 LASNPEIEV 191 (201)
Q Consensus 183 ~~~~~~~~~ 191 (201)
-+.|+.+|.
T Consensus 221 ~aGN~~tE~ 229 (259)
T cd07939 221 RAGNAALEE 229 (259)
T ss_pred cccCcCHHH
Confidence 788888874
No 9
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=96.00 E-value=0.028 Score=49.00 Aligned_cols=148 Identities=13% Similarity=0.055 Sum_probs=103.7
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (201)
.-++++..++. + ..+|+-.....-+|.+-+..-.+- .+.+++-++.+|++|..+...- |.+....++.+
T Consensus 75 ~~~~~~~~~~~----~--~~~~i~~a~~~g~~~iri~~~~s~---~~~~~~~i~~ak~~G~~v~~~~--~~~~~~~~~~~ 143 (263)
T cd07943 75 AKLGVLLLPGI----G--TVDDLKMAADLGVDVVRVATHCTE---ADVSEQHIGAARKLGMDVVGFL--MMSHMASPEEL 143 (263)
T ss_pred CEEEEEecCCc----c--CHHHHHHHHHcCCCEEEEEechhh---HHHHHHHHHHHHHCCCeEEEEE--EeccCCCHHHH
Confidence 34555666654 2 246665556667999888764443 3569999999999998776531 22333445688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEe
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVAR 173 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~ 173 (201)
.++.+.+.+.|.+.|-+.|-+-.+.+++-.++++.++++ +.+ ..++....+ ..+++|++ ++
T Consensus 144 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~l~~H~Hn~~GlA~AN~laAi~aGa~-------~v 214 (263)
T cd07943 144 AEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREA-LDP-TPVGFHGHNNLGLAVANSLAAVEAGAT-------RI 214 (263)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CCC-ceEEEEecCCcchHHHHHHHHHHhCCC-------EE
Confidence 888999999999999999999999999999999999886 222 234444322 34667777 35
Q ss_pred cccCcCeeccccCCceee
Q 028948 174 APRSTDKLFLASNPEIEV 191 (201)
Q Consensus 174 E~Res~~v~~~~~~~~~~ 191 (201)
++-=.|.=+-+.||.+|-
T Consensus 215 d~s~~GlG~~aGN~~~E~ 232 (263)
T cd07943 215 DGSLAGLGAGAGNTPLEV 232 (263)
T ss_pred EeecccccCCcCCccHHH
Confidence 555555555688888874
No 10
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=95.95 E-value=0.026 Score=49.83 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=98.0
Q ss_pred CCCCCCcchhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHH
Q 028948 32 PHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (201)
Q Consensus 32 kG~s~~~g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~eyl~~ 109 (201)
+|+... +.+..++.++.+.+. +|.+-+....+-+ +.+++-++.++++|..+... .. +.+-...++.+.++.+.
T Consensus 83 ~~~~~~-p~~~~~~di~~~~~~g~~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~i~~-~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 83 VGYRHY-PDDVVELFVEKAAKNGIDIFRIFDALNDV---RNLEVAIKAVKKAGKHVEGAICY-TGSPVHTLEYYVKLAKE 157 (275)
T ss_pred cCccCC-CcHHHHHHHHHHHHcCCCEEEEeecCChH---HHHHHHHHHHHHCCCeEEEEEEe-cCCCCCCHHHHHHHHHH
Confidence 454444 444567777766665 8999998766553 56999999999999876642 11 01112344578888899
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcC
Q 028948 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTD 179 (201)
Q Consensus 110 ~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~ 179 (201)
+.++|.+.|-|.|-.-.+.+++-.++|+.++++ +. ..++....+ ..+++|++ +|- .-=.|
T Consensus 158 ~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~Hnd~GlA~aN~laA~~aGa~-----~vd--~sv~G 227 (275)
T cd07937 158 LEDMGADSICIKDMAGLLTPYAAYELVKALKKE-VG--LPIHLHTHDTSGLAVATYLAAAEAGVD-----IVD--TAISP 227 (275)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-CC--CeEEEEecCCCChHHHHHHHHHHhCCC-----EEE--Eeccc
Confidence 999999999999999999999999999999986 22 223333221 34667777 443 33333
Q ss_pred eeccccCCceee
Q 028948 180 KLFLASNPEIEV 191 (201)
Q Consensus 180 ~v~~~~~~~~~~ 191 (201)
.=+-+.|+.+|.
T Consensus 228 lG~~aGN~~~E~ 239 (275)
T cd07937 228 LSGGTSQPSTES 239 (275)
T ss_pred ccCCcCChhHHH
Confidence 333477777763
No 11
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=95.93 E-value=0.029 Score=51.15 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=70.6
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc----
Q 028948 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL---- 125 (201)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~~-~eyl~~~k~lGFd~IEISdGti---- 125 (201)
.-|+-+-||+||..+++.+.|++.++.++++ ++.. . .|..+.-+|+.+ ++.++.++++||+.|.|.--|.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~--~--~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~ 133 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP--G--AEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHV 133 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCC--C--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH
Confidence 4589999999999999999999999999874 4322 1 133332334443 5799999999999999987666
Q ss_pred ------cCChhHHHHHHHHHHHCCCe-Eccc
Q 028948 126 ------EIPEETLLRYVRLVKSAGLK-AKPK 149 (201)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~Gf~-v~pE 149 (201)
..+.++-.+.++.+++.||. |...
T Consensus 134 L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~d 164 (375)
T PRK05628 134 LAVLDRTHTPGRAVAAAREARAAGFEHVNLD 164 (375)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 24566777899999999998 6433
No 12
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=95.86 E-value=0.017 Score=50.93 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=102.7
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (201)
.=+..+.+++- ...+|+......-||.+.+++..+.+ +.+++-++.++++|..|..+ +|.+....++.+
T Consensus 72 ~~~~~~~~~~~------~~~~~l~~a~~~gv~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~~~~ 140 (266)
T cd07944 72 TKIAVMVDYGN------DDIDLLEPASGSVVDMIRVAFHKHEF---DEALPLIKAIKEKGYEVFFN--LMAISGYSDEEL 140 (266)
T ss_pred CEEEEEECCCC------CCHHHHHHHhcCCcCEEEEecccccH---HHHHHHHHHHHHCCCeEEEE--EEeecCCCHHHH
Confidence 34555555552 14667777777889999999876643 55999999999999988864 111223455688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEe
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVAR 173 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~ 173 (201)
.++++.+.+.|.+.|-|.|-.-.+.+++-.++++.++++ +..-..++....+ ..+++|++ +|-
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~-----~vd- 213 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN-LDKDIKLGFHAHNNLQLALANTLEAIELGVE-----IID- 213 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeCCCccHHHHHHHHHHHcCCC-----EEE-
Confidence 999999999999999999999999999999999999875 2210122322211 34677777 443
Q ss_pred cccCcCeeccccCCceee
Q 028948 174 APRSTDKLFLASNPEIEV 191 (201)
Q Consensus 174 E~Res~~v~~~~~~~~~~ 191 (201)
.-=.|.=+-+.|+.+|.
T Consensus 214 -~s~~G~G~~aGN~~~E~ 230 (266)
T cd07944 214 -ATVYGMGRGAGNLPTEL 230 (266)
T ss_pred -EecccCCCCcCcHHHHH
Confidence 33333333477887774
No 13
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=95.68 E-value=0.015 Score=50.13 Aligned_cols=57 Identities=25% Similarity=0.405 Sum_probs=47.5
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeEc
Q 028948 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 90 tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
|.+|+++.++ -.+++.++.++++||+.||++-.. ..++.++..++-+.+++.|+++.
T Consensus 11 ~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 11 GIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred eeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCcee
Confidence 7889999765 379999999999999999998543 24577788888889999999974
No 14
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=95.31 E-value=0.079 Score=48.52 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=70.6
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 028948 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (201)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~eyl~~~k~lGFd~IEISdGti----- 125 (201)
..++-+=||+||.++.+.+.|++.++.++++ + .++ .|+.+.-+|+. -++.++.+++.|++.|.|.--|.
T Consensus 55 ~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~-~--~~~--~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL 129 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLNDQLLDILLSTIKPY-V--DNN--CEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNIL 129 (353)
T ss_pred CCeEEEEECCCccccCCHHHHHHHHHHHHHh-c--CCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 5588999999999999999999999999997 2 222 25555455654 47899999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHCCCe
Q 028948 126 -----EIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~ 145 (201)
.-+.++-.+.|+.+++.||.
T Consensus 130 ~~l~R~~~~~~~~~ai~~lr~~G~~ 154 (353)
T PRK05904 130 KQLNRTHTIQDSKEAINLLHKNGIY 154 (353)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 34566777899999999986
No 15
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=95.25 E-value=0.057 Score=49.02 Aligned_cols=94 Identities=16% Similarity=0.285 Sum_probs=69.6
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 028948 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (201)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~eyl~~~k~lGFd~IEISdGti~---- 126 (201)
.-|+.|=||+||..+.+.+.|.+.++..+++= .+..+ .|..+.-+|+.+ ++.++.++++|++.|.|+--|.+
T Consensus 50 ~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l 126 (360)
T TIGR00539 50 EPLESIFIGGGTPNTLSVEAFERLFESIYQHA-SLSDD--CEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKL 126 (360)
T ss_pred CcccEEEeCCCchhcCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHH
Confidence 34889999999999999999999999887641 11122 344443344443 58889999999999998877663
Q ss_pred ------CChhHHHHHHHHHHHCCCe-Ecc
Q 028948 127 ------IPEETLLRYVRLVKSAGLK-AKP 148 (201)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~-v~p 148 (201)
-+.++-.+.|+.+++.||. +..
T Consensus 127 ~~lgR~~~~~~~~~ai~~l~~~G~~~v~~ 155 (360)
T TIGR00539 127 LFLGRQHSAKNIAPAIETALKSGIENISL 155 (360)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 4567778899999999995 544
No 16
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=95.21 E-value=0.062 Score=50.41 Aligned_cols=90 Identities=21% Similarity=0.415 Sum_probs=67.0
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 028948 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (201)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~eyl~~~k~lGFd~IEISdGti~----- 126 (201)
-|+-|-||+||..+++.+.|.+.++.++++ ..+..+ .|..+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~-~~~~~~--~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~ 178 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIREN-FPFNAD--AEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQ 178 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHh-CCCCCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHH
Confidence 477889999999999999999999999986 111111 12222223322 368999999999999999866663
Q ss_pred -----CChhHHHHHHHHHHHCCCe
Q 028948 127 -----IPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf~ 145 (201)
-+.++-.+.|+.+++.||+
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~ 202 (455)
T TIGR00538 179 AVNRIQPEEMIFELMNHAREAGFT 202 (455)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCC
Confidence 4556667899999999996
No 17
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=95.19 E-value=0.038 Score=51.18 Aligned_cols=91 Identities=22% Similarity=0.400 Sum_probs=69.3
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 028948 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (201)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~eyl~~~k~lGFd~IEISdGti----- 125 (201)
.-|+-+=||+||.+++|.+.|++.++..+++ ..+.+. .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 65 ~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~-~~~~~~--~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L 141 (400)
T PRK07379 65 QPLQTVFFGGGTPSLLSVEQLERILTTLDQR-FGIAPD--AEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELL 141 (400)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHH
Confidence 4589999999999999999999999999876 222221 244333344443 5889999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHCCCe
Q 028948 126 -----EIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~ 145 (201)
..+.++-.+.++.+++.||.
T Consensus 142 ~~l~R~~~~~~~~~ai~~l~~~G~~ 166 (400)
T PRK07379 142 ALCGRSHRVKDIFAAVDLIHQAGIE 166 (400)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 35667778889999999997
No 18
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=95.09 E-value=0.047 Score=46.70 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=43.4
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeEc
Q 028948 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 90 tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
|.|+..+.++ -.+++.++.++++||+.||++-.. ...+.++..++-+.+++.|+++.
T Consensus 6 g~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 6 GIYEKALPKH-LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred chhhhhcCCC-CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCce
Confidence 4566666542 368999999999999999997322 24566778888889999999874
No 19
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=95.07 E-value=0.085 Score=48.47 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=61.1
Q ss_pred hcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC--------c-cHHHHHHHhCC----chHHHHHHHHHHcCCC
Q 028948 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------G-DWAEHLIRNGP----SAFKEYVEDCKQVGFD 116 (201)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--------G-tlfE~al~qg~----~~~~eyl~~~k~lGFd 116 (201)
.=+|||.+ .-|+-+++..+ =..-|+.||+|||+|.+ + .|++.++.+++ .-+++.++.|+.+|||
T Consensus 29 ~W~yvD~f-vywsh~~~~iP--p~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfD 105 (339)
T cd06547 29 YWQYVDTF-VYFSHSAVTIP--PADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFD 105 (339)
T ss_pred chhhhhee-ecccCccccCC--CcHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCC
Confidence 33688887 44444444433 24678899999999973 2 36677776522 1378899999999999
Q ss_pred EEEecCCcccCChhHHH---HHHHHHHHC------CCeE
Q 028948 117 TIELNVGSLEIPEETLL---RYVRLVKSA------GLKA 146 (201)
Q Consensus 117 ~IEISdGti~i~~~~r~---~lI~~~~~~------Gf~v 146 (201)
.+=|+-=+.--+.+++. .+++.+++. +++|
T Consensus 106 Gw~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v 144 (339)
T cd06547 106 GWLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLV 144 (339)
T ss_pred ceEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEE
Confidence 98887666542334333 344444444 6666
No 20
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.15 Score=47.10 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=66.2
Q ss_pred HHHHHHHhhcccccEEEeeCc-----ccc-ccChhHHHHHHHHHHhCCceecC-c-cHHHHHHHhCCchHHHHHHHHHHc
Q 028948 42 VLEDIFESMGQFVDGLKFSGG-----SHS-LMPKPFIEEVVKRAHQHDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQV 113 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~G-----Ts~-l~p~~~L~eKI~l~~~~gV~v~~-G-tlfE~al~qg~~~~~eyl~~~k~l 113 (201)
.++++-.......|-+=+|.- ..+ -++.+.|++-|+++|+||+++|- . +++-..-.. .+.+|++.+.++
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~---~~~~~l~~l~e~ 91 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELE---TLERYLDRLVEL 91 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhh---HHHHHHHHHHHc
Confidence 555555554444787777743 222 25556799999999999997664 4 543222122 478999999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHCC--CeE
Q 028948 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAG--LKA 146 (201)
Q Consensus 114 GFd~IEISdGti~i~~~~r~~lI~~~~~~G--f~v 146 (201)
|.|+|+++| .-+|..+++.+ +.+
T Consensus 92 GvDaviv~D----------pg~i~l~~e~~p~l~i 116 (347)
T COG0826 92 GVDAVIVAD----------PGLIMLARERGPDLPI 116 (347)
T ss_pred CCCEEEEcC----------HHHHHHHHHhCCCCcE
Confidence 999999999 67899999988 655
No 21
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=94.74 E-value=0.12 Score=48.68 Aligned_cols=89 Identities=24% Similarity=0.441 Sum_probs=67.9
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 028948 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (201)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~-~~eyl~~~k~lGFd~IEISdGti~---- 126 (201)
-|+-+=||+||..+.|.+.|++.++.++++ ++ .++ .|+.+.-+|.. -++.++.++++||+.|.|+--+.+
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~--~~~--~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl 178 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDF--APE--AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQ 178 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCC--CCC--ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 367788999999999999999999999885 22 111 23322223333 378999999999999999877663
Q ss_pred ------CChhHHHHHHHHHHHCCCe
Q 028948 127 ------IPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~ 145 (201)
-+.++-.+.|+.+++.||.
T Consensus 179 ~~l~R~~~~~~~~~ai~~lr~~G~~ 203 (453)
T PRK13347 179 KAINRIQPEEMVARAVELLRAAGFE 203 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCC
Confidence 5677778999999999996
No 22
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.66 E-value=0.027 Score=47.78 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=89.1
Q ss_pred ccEEEeeCcccccc-----------ChhHHHHHHHHHHhCCceecCccHHHHHHH--hCCchHHHHHHHHHHcCCCEEEe
Q 028948 54 VDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIR--NGPSAFKEYVEDCKQVGFDTIEL 120 (201)
Q Consensus 54 ID~lKfg~GTs~l~-----------p~~~L~eKI~l~~~~gV~v~~GtlfE~al~--qg~~~~~eyl~~~k~lGFd~IEI 120 (201)
+|.+-+...++-.+ .-+.+.+-|+.++++|+.+.... |.+.. .+++.+.++++.+.++|.+.|-+
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL--EDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 78888887666211 12348889999999999877641 22223 55668999999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCeeccccCCcee
Q 028948 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIE 190 (201)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v~~~~~~~~~ 190 (201)
.|-+-.+.+++..++|+.+++.- .- ..++....+ ..+.+|++ + +++-=.|.=.-+.|+.+|
T Consensus 166 ~Dt~G~~~P~~v~~li~~l~~~~-~~-~~~~~H~Hn~~gla~an~laA~~aG~~-----~--id~s~~G~G~~~Gn~~~e 236 (265)
T cd03174 166 KDTVGLATPEEVAELVKALREAL-PD-VPLGLHTHNTLGLAVANSLAALEAGAD-----R--VDGSVNGLGERAGNAATE 236 (265)
T ss_pred chhcCCcCHHHHHHHHHHHHHhC-CC-CeEEEEeCCCCChHHHHHHHHHHcCCC-----E--EEeccccccccccCccHH
Confidence 99999999999999999999872 21 233333221 34667776 3 354444444567788777
Q ss_pred e
Q 028948 191 V 191 (201)
Q Consensus 191 ~ 191 (201)
.
T Consensus 237 ~ 237 (265)
T cd03174 237 D 237 (265)
T ss_pred H
Confidence 4
No 23
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=94.63 E-value=0.069 Score=47.04 Aligned_cols=131 Identities=12% Similarity=0.067 Sum_probs=86.6
Q ss_pred cccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCc-c-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 028948 51 GQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (201)
Q Consensus 51 g~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~G-t-lfE~al~qg~~~~~eyl~~~k~lGFd~ 117 (201)
..-+|.+.+...+|-.+.. +.+++-++++|++|..|+.+ . +++. ....++.+.++++.+.+.|.+.
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~ 167 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADW 167 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCE
Confidence 3456777777665544322 24688999999999988875 2 3231 1223456778888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCeeccccCC
Q 028948 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKLFLASNP 187 (201)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v~~~~~~ 187 (201)
|-|.|-.-.+.+++-.++++.++++ +. ...++..+.+ ..+.+|++ +| +.-=.|.=.-+.|+
T Consensus 168 i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~l~~H~Hnd~Gla~An~laA~~aGa~-----~i--d~s~~GlGeraGn~ 238 (273)
T cd07941 168 LVLCDTNGGTLPHEIAEIVKEVRER-LP-GVPLGIHAHNDSGLAVANSLAAVEAGAT-----QV--QGTINGYGERCGNA 238 (273)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh-CC-CCeeEEEecCCCCcHHHHHHHHHHcCCC-----EE--EEeccccccccccc
Confidence 9999999999999999999999986 21 1223333221 34667777 43 33333333446777
Q ss_pred ceee
Q 028948 188 EIEV 191 (201)
Q Consensus 188 ~~~~ 191 (201)
.+|.
T Consensus 239 ~~e~ 242 (273)
T cd07941 239 NLCS 242 (273)
T ss_pred cHHH
Confidence 7663
No 24
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=94.58 E-value=0.11 Score=48.61 Aligned_cols=91 Identities=14% Similarity=0.269 Sum_probs=66.5
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc------
Q 028948 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE------ 126 (201)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~eyl~~~k~lGFd~IEISdGti~------ 126 (201)
+.-+=||+||-.+++.+.|++.++..+++- .+.++. .|+.+.-+|+. -++.++.++++||+.|.|.--|.+
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~-~~~~~~-~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 169 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVL-GVDLGN-IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHA 169 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhC-CCCCCC-ceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 667889999999999999999999987642 122211 13333333433 378999999999999999877762
Q ss_pred ----CChhHHHHHHHHHHHCCCeE
Q 028948 127 ----IPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 127 ----i~~~~r~~lI~~~~~~Gf~v 146 (201)
-+.++-.+.|+.+++.||.+
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~ 193 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPI 193 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCe
Confidence 24566778999999999874
No 25
>PRK05660 HemN family oxidoreductase; Provisional
Probab=94.55 E-value=0.077 Score=48.78 Aligned_cols=92 Identities=18% Similarity=0.291 Sum_probs=69.5
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 028948 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (201)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~eyl~~~k~lGFd~IEISdGti~---- 126 (201)
.-|+-|=||+||..+.+.+.|.+.++.++++= .+.++ .|+.+.-+|+. -++.++.++++||+.|.|+--|.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARL-PFAPD--AEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhC-CCCCC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 45899999999999999999999999998751 11111 24444444333 358899999999999999877664
Q ss_pred ------CChhHHHHHHHHHHHCCCeE
Q 028948 127 ------IPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~v 146 (201)
-+.++-.+.|+.+++.||..
T Consensus 134 ~~l~r~~~~~~~~~ai~~~~~~G~~~ 159 (378)
T PRK05660 134 KRLGRIHGPDEAKRAAKLAQGLGLRS 159 (378)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 35667778899999999963
No 26
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.45 E-value=0.94 Score=39.19 Aligned_cols=115 Identities=16% Similarity=0.224 Sum_probs=70.0
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccc-cChhHHHHHHHHHHhCCc-------------eecCccHHHHHHHhCCchHH
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSL-MPKPFIEEVVKRAHQHDV-------------YVSTGDWAEHLIRNGPSAFK 104 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l-~p~~~L~eKI~l~~~~gV-------------~v~~GtlfE~al~qg~~~~~ 104 (201)
++..+.++++..-+-+|.+=+|.=.+-. .+-..+++..+.+.++|+ ++..=+.+-. + +- ..+
T Consensus 16 ~~~~~~~~~~~l~~~ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~-~-~~--~~~ 91 (244)
T PRK13125 16 NVESFKEFIIGLVELVDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED-Y-VD--SLD 91 (244)
T ss_pred CHHHHHHHHHHHHhhCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch-h-hh--CHH
Confidence 3445555555433339999999844433 234455555555444333 2210011111 1 11 588
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCCCC
Q 028948 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSD 158 (201)
Q Consensus 105 eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~~d 158 (201)
+|++.|++.|.+.|=|=|-.++- .++..++++.+++.|+++...+.-.-..++
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~-~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~ 144 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDY-PDDLEKYVEIIKNKGLKPVFFTSPKFPDLL 144 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCc-HHHHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 99999999999999884432221 356679999999999999777766554333
No 27
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=94.40 E-value=0.11 Score=48.87 Aligned_cols=89 Identities=20% Similarity=0.356 Sum_probs=66.5
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 028948 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (201)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~eyl~~~k~lGFd~IEISdGti~----- 126 (201)
-|+-+=||+||..+++.+.|.+.++.++++= .+.++ .|+.+.-+|+. -++.++.+++.|++.|.|+--+.+
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~ 178 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMALLREHF-NFAPD--AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQK 178 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 4889999999999999999999999998761 11122 12222223323 368899999999999999876663
Q ss_pred -----CChhHHHHHHHHHHHCCC
Q 028948 127 -----IPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf 144 (201)
-+.++-.+.|+.+++.||
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~ 201 (453)
T PRK09249 179 AVNRIQPFEFTFALVEAARELGF 201 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCC
Confidence 566777889999999998
No 28
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=94.15 E-value=0.071 Score=48.92 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=91.1
Q ss_pred hcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 028948 50 MGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~I 118 (201)
...-+|.+-+...+|-++-+ +.+++-|+.++++|..|..+ +|.+-...++.+.++.+.+.+.|.+.|
T Consensus 82 ~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 82 ARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG--GEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred HcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe--ecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 33457888888877754332 22568899999999988876 455555566788999999999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCeeccccCCc
Q 028948 119 ELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (201)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v~~~~~~~ 188 (201)
-+.|-.--+.+++-.++|+.+++. +.+ .+++...+ ..+.+|++ +| ++-=.|.=.-+.|+.
T Consensus 160 ~l~DT~G~~~P~~v~~lv~~l~~~-~~v--~l~~H~HNd~GlA~ANalaA~~aGa~-----~v--d~tl~GiGeraGN~~ 229 (365)
T TIGR02660 160 RFADTVGILDPFSTYELVRALRQA-VDL--PLEMHAHNDLGMATANTLAAVRAGAT-----HV--NTTVNGLGERAGNAA 229 (365)
T ss_pred EEcccCCCCCHHHHHHHHHHHHHh-cCC--eEEEEecCCCChHHHHHHHHHHhCCC-----EE--EEEeeccccccccCC
Confidence 999999999999999999999876 222 23443322 34677777 43 333333334466766
Q ss_pred ee
Q 028948 189 IE 190 (201)
Q Consensus 189 ~~ 190 (201)
+|
T Consensus 230 lE 231 (365)
T TIGR02660 230 LE 231 (365)
T ss_pred HH
Confidence 65
No 29
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=93.99 E-value=0.61 Score=42.23 Aligned_cols=109 Identities=12% Similarity=0.208 Sum_probs=76.4
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccccccChhHHHHHHHHHHhC--CceecCccHHHHHH---HhCCchHHHHHHHHHH
Q 028948 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQ 112 (201)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al---~qg~~~~~eyl~~~k~ 112 (201)
.+.++.+.++.+-+ .+.-+-|..|.....+.+.+.+.++..+++ ++.++.-+=.|+.+ .-| -..++.++..|+
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g-~~~~e~l~~Lke 149 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSG-LSVEEALKRLKE 149 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 44455555544443 477788888877777888899999999998 45554434455432 222 346899999999
Q ss_pred cCCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHCCCeEcc
Q 028948 113 VGFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 113 lGFd~IE-ISdGti-----------~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
.|++.+- .+.-+. .++.++|.+.|+.+++.|+++..
T Consensus 150 AGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s 197 (343)
T TIGR03551 150 AGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA 197 (343)
T ss_pred hCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc
Confidence 9999884 222222 36788999999999999999844
No 30
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=93.88 E-value=0.1 Score=48.14 Aligned_cols=134 Identities=19% Similarity=0.182 Sum_probs=95.2
Q ss_pred HHHHHHHhhcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHH
Q 028948 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~ 110 (201)
.++..+++ -+|.+-+...+|-++-+ +.+++-++.++++|..|..+ +|.+-..+++.+.++++.+
T Consensus 80 di~~a~~~---g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~ 154 (378)
T PRK11858 80 DIDASIDC---GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--AEDASRTDLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHhC---CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eccCCCCCHHHHHHHHHHH
Confidence 34444443 47888888887776433 44778899999999988876 4555556667899999999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCe
Q 028948 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDK 180 (201)
Q Consensus 111 k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~ 180 (201)
.+.|.+.|-+.|-.-.+.+++-.++|+.+++. +. ..+++.+.+ ..+.+|++ +|-. -=.|.
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~Hnd~GlA~AN~laAv~aGa~-----~vd~--tv~Gl 224 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYELVKELVEA-VD--IPIEVHCHNDFGMATANALAGIEAGAK-----QVHT--TVNGL 224 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cC--CeEEEEecCCcCHHHHHHHHHHHcCCC-----EEEE--eeccc
Confidence 99999999999999999999999999999876 22 234444322 34677777 4433 22222
Q ss_pred eccccCCcee
Q 028948 181 LFLASNPEIE 190 (201)
Q Consensus 181 v~~~~~~~~~ 190 (201)
=.-+-|+++|
T Consensus 225 GeraGNa~lE 234 (378)
T PRK11858 225 GERAGNAALE 234 (378)
T ss_pred cccccCccHH
Confidence 2346777776
No 31
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=93.87 E-value=0.19 Score=43.87 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=93.1
Q ss_pred HHHHHHHhhc-ccccEEEeeCcccccc-----------ChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHH
Q 028948 42 VLEDIFESMG-QFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (201)
Q Consensus 42 ~l~DlLe~ag-~yID~lKfg~GTs~l~-----------p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~ 109 (201)
.++..++.-. ..+|.+.+...+|-+. .-+.+++-++.++++|..++.+. |.+-...++.+.++.+.
T Consensus 74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~ 151 (268)
T cd07940 74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA--EDATRTDLDFLIEVVEA 151 (268)
T ss_pred hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee--ecCCCCCHHHHHHHHHH
Confidence 4444444321 2289998877655442 11447789999999999888652 22222345578888899
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE-ccccccccCC----------CCcccccccccccEEEecccCc
Q 028948 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA-KPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRST 178 (201)
Q Consensus 110 ~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v-~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res 178 (201)
+.++|.+.|-+.|-+-.+.+++-.++++.+++. +.- ...++..+.+ ..+++|++ + +++-=.
T Consensus 152 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~-----~--iD~s~~ 223 (268)
T cd07940 152 AIEAGATTINIPDTVGYLTPEEFGELIKKLKEN-VPNIKVPISVHCHNDLGLAVANSLAAVEAGAR-----Q--VECTIN 223 (268)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHh-CCCCceeEEEEecCCcchHHHHHHHHHHhCCC-----E--EEEEee
Confidence 999999999999999999999999999999986 210 0123333321 34667777 3 355555
Q ss_pred CeeccccCCceee
Q 028948 179 DKLFLASNPEIEV 191 (201)
Q Consensus 179 ~~v~~~~~~~~~~ 191 (201)
|.=.-+.|+++|.
T Consensus 224 GlG~~aGN~~tE~ 236 (268)
T cd07940 224 GIGERAGNAALEE 236 (268)
T ss_pred ccccccccccHHH
Confidence 5545577887764
No 32
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.83 E-value=0.071 Score=45.06 Aligned_cols=139 Identities=21% Similarity=0.139 Sum_probs=89.1
Q ss_pred hHHHHHHH-hhcccccEEEeeCccccccC-----------hhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHH
Q 028948 41 NVLEDIFE-SMGQFVDGLKFSGGSHSLMP-----------KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (201)
Q Consensus 41 ~~l~DlLe-~ag~yID~lKfg~GTs~l~p-----------~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~ 108 (201)
..++..++ ....=+|.+-+...+|-++. -+.+++-++.++++|..++.+. |.+-...++.+.++.+
T Consensus 67 ~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~--~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC--EDASRTDPEELLELAE 144 (237)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE--TTTGGSSHHHHHHHHH
T ss_pred HHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc--cccccccHHHHHHHHH
Confidence 34444333 23456777777776665222 2458888999999999998763 1222334457889999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCc
Q 028948 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRST 178 (201)
Q Consensus 109 ~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res 178 (201)
.+.++|.+.|-|.|-.-.+.+++-.++|+.+++.--. .+++....+ ..+.+|++ +| +.-=.
T Consensus 145 ~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l~~H~Hnd~Gla~An~laA~~aGa~-----~i--d~t~~ 215 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IPLGFHAHNDLGLAVANALAALEAGAD-----RI--DGTLG 215 (237)
T ss_dssp HHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SEEEEEEBBTTS-HHHHHHHHHHTT-S-----EE--EEBGG
T ss_pred HHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--CeEEEEecCCccchhHHHHHHHHcCCC-----EE--EccCc
Confidence 9999999999999999999999999999999987222 344443322 34677887 54 33333
Q ss_pred CeeccccCCcee
Q 028948 179 DKLFLASNPEIE 190 (201)
Q Consensus 179 ~~v~~~~~~~~~ 190 (201)
|.=.-+.|+.+|
T Consensus 216 GlG~~~Gn~~le 227 (237)
T PF00682_consen 216 GLGERAGNAPLE 227 (237)
T ss_dssp GGSSTTSB-BHH
T ss_pred cCCCCCCCccHH
Confidence 333446666655
No 33
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=93.82 E-value=0.23 Score=46.05 Aligned_cols=92 Identities=17% Similarity=0.363 Sum_probs=69.5
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 028948 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (201)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~eyl~~~k~lGFd~IEISdGti~---- 126 (201)
..|+-+=||+||-++.+.+.|++.++.++++. .+. .-.|+.+.-+|+.+ +++++.++++|++.|.|.--|.+
T Consensus 61 ~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~-~~~--~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L 137 (390)
T PRK06582 61 KYIKSIFFGGGTPSLMNPVIVEGIINKISNLA-IID--NQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDL 137 (390)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhC-CCC--CCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHH
Confidence 46999999999999999999999999999863 111 11244444466655 79999999999999988776652
Q ss_pred ------CChhHHHHHHHHHHHCCCeE
Q 028948 127 ------IPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~v 146 (201)
-+.++-.+.++.+++.+..+
T Consensus 138 ~~lgR~h~~~~~~~ai~~~~~~~~~v 163 (390)
T PRK06582 138 KKLGRTHDCMQAIKTIEAANTIFPRV 163 (390)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCCcE
Confidence 24566677888888875555
No 34
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=93.69 E-value=0.3 Score=44.37 Aligned_cols=89 Identities=13% Similarity=0.259 Sum_probs=62.4
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCc-hHHHHHHHHHHcCCCEEEecCCccc-----
Q 028948 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDTIELNVGSLE----- 126 (201)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~-~~~eyl~~~k~lGFd~IEISdGti~----- 126 (201)
-++.+=||+||..+.+.+.+++..+..+++++. ++ .|..+.-+|+ --++.++.++++|++.|.|+--|.+
T Consensus 51 ~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~--~~--~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~ 126 (374)
T PRK05799 51 KIKSIFIGGGTPTYLSLEALEILKETIKKLNKK--ED--LEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLK 126 (374)
T ss_pred ceeEEEECCCcccCCCHHHHHHHHHHHHhCCCC--CC--CEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHH
Confidence 377888999999998888888777777765432 22 1222222232 3468899999999998888765552
Q ss_pred -----CChhHHHHHHHHHHHCCCe
Q 028948 127 -----IPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf~ 145 (201)
-+.++-.+.|+.+++.||.
T Consensus 127 ~l~R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 127 YLGRIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCC
Confidence 2455667788899999985
No 35
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=93.64 E-value=0.94 Score=41.25 Aligned_cols=89 Identities=20% Similarity=0.317 Sum_probs=64.8
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 028948 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (201)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~-~~eyl~~~k~lGFd~IEISdGti----- 125 (201)
-|+-+=||+||..+.+.+.|++.++.++++ ++.. ..|+.+.-+|+. -++.++.+++.|++.|.|+--|.
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~----~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l 126 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSG----LEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELL 126 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCC----CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 367788899999988888899999999886 3210 012222222222 35888889999999999887776
Q ss_pred -----cCChhHHHHHHHHHHHCCCe
Q 028948 126 -----EIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~ 145 (201)
..+.++..+.|+.+++.||.
T Consensus 127 ~~l~r~~~~~~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 127 KKIGRTHNEEDVYEAIANAKKAGFD 151 (377)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 35667888899999999986
No 36
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=93.59 E-value=0.15 Score=46.90 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=68.3
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHH-HHHHHHHHcCCCEEEecCCccc----
Q 028948 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK-EYVEDCKQVGFDTIELNVGSLE---- 126 (201)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~-eyl~~~k~lGFd~IEISdGti~---- 126 (201)
.-|+-|=||+||..+.|.+.|++.++.++++= .+. .-.|+.+.-+|+.++ ++++.+++.||+.|.|---|.+
T Consensus 54 ~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f-~~~--~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL 130 (380)
T PRK09057 54 RTLTSIFFGGGTPSLMQPETVAALLDAIARLW-PVA--DDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADL 130 (380)
T ss_pred CCcCeEEeCCCccccCCHHHHHHHHHHHHHhC-CCC--CCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 35889999999999999999999999998731 111 113544444555544 8999999999999888655542
Q ss_pred ------CChhHHHHHHHHHHHCCCeEcc
Q 028948 127 ------IPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
-+.++-.+.++.+++.+..|..
T Consensus 131 ~~l~R~~~~~~~~~ai~~~~~~~~~v~~ 158 (380)
T PRK09057 131 RFLGRLHSVAEALAAIDLAREIFPRVSF 158 (380)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCccEEE
Confidence 2455666788888888766644
No 37
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=93.54 E-value=0.13 Score=44.53 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=42.1
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeEc
Q 028948 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 92 fE~al~qg~~~~~eyl~~~k~lGFd~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
|+.++.++ -.+.+-++.++++||+.|||+-+. .+++.++...+-+.+++.|+++.
T Consensus 8 ~~~~~~~~-~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 8 YEKALPKG-ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred ehhhCCCC-CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 44555532 268888899999999999997443 35578888889999999999974
No 38
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=93.38 E-value=0.8 Score=37.49 Aligned_cols=141 Identities=15% Similarity=0.073 Sum_probs=85.6
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC--CceecCc-cHHHHHHHhCCchHHHHHHHHHHcCC
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~G-tlfE~al~qg~~~~~eyl~~~k~lGF 115 (201)
.+....++++...++||.+|+|+- ..++.. .+-|+..+++ ++++.-. ... + --..+++.+.+.|.
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~--~~~~~g--~~~i~~i~~~~~~~~i~~~~~v~------~--~~~~~~~~~~~aGa 78 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTP--LIKSEG--MEAVRALREAFPDKIIVADLKTA------D--AGALEAEMAFKAGA 78 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCH--HHHHhC--HHHHHHHHHHCCCCEEEEEEEec------c--ccHHHHHHHHhcCC
Confidence 677889999999999999999642 222211 2344444543 6655443 222 2 11234688999999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHCCCeEccc-cccccCCC---CcccccccccccEEEec-ccCcCeec--------
Q 028948 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK-FAVMFNKS---DIPSDRDRAFGAYVARA-PRSTDKLF-------- 182 (201)
Q Consensus 116 d~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE-~g~k~~~~---dl~ag~~~a~g~~Vi~E-~Res~~v~-------- 182 (201)
|.|=+..-+ +.+.-.++++.+++.|.++..+ .+.....+ -+..|.+ +|.+. ++.+++.+
T Consensus 79 d~i~~h~~~---~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d-----~v~~~~~~~~~~~~~~~~~~~i 150 (202)
T cd04726 79 DIVTVLGAA---PLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVD-----IVILHRGIDAQAAGGWWPEDDL 150 (202)
T ss_pred CEEEEEeeC---CHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCC-----EEEEcCcccccccCCCCCHHHH
Confidence 999887654 2345668999999999888644 44443332 2444666 77664 23333221
Q ss_pred --cc--cCCceeeeecccccc
Q 028948 183 --LA--SNPEIEVGVGINKSR 199 (201)
Q Consensus 183 --~~--~~~~~~~~~~~~~~~ 199 (201)
+. .|--|.+.-|||...
T Consensus 151 ~~~~~~~~~~i~~~GGI~~~~ 171 (202)
T cd04726 151 KKVKKLLGVKVAVAGGITPDT 171 (202)
T ss_pred HHHHhhcCCCEEEECCcCHHH
Confidence 11 345577777887643
No 39
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=93.03 E-value=0.39 Score=46.14 Aligned_cols=93 Identities=18% Similarity=0.296 Sum_probs=69.8
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHh-CCc-hHHHHHHHHHHcCCCEEEecCCccc---
Q 028948 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GPS-AFKEYVEDCKQVGFDTIELNVGSLE--- 126 (201)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~q-g~~-~~~eyl~~~k~lGFd~IEISdGti~--- 126 (201)
.-|+.+=||+||-.+.+.+.|.+.++.++++-..+. ..-|..+.. .|+ --++.++.+++.|++.|.|+--|.+
T Consensus 217 ~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~--~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~v 294 (488)
T PRK08207 217 LKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK--NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDET 294 (488)
T ss_pred CceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC--CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHH
Confidence 358899999999999999999999999887521111 111333322 222 3478899999999999999887774
Q ss_pred -------CChhHHHHHHHHHHHCCC-eE
Q 028948 127 -------IPEETLLRYVRLVKSAGL-KA 146 (201)
Q Consensus 127 -------i~~~~r~~lI~~~~~~Gf-~v 146 (201)
-+.++-.+.++.+++.|| .+
T Consensus 295 Lk~igR~ht~e~v~~ai~~ar~~Gf~~I 322 (488)
T PRK08207 295 LKAIGRHHTVEDIIEKFHLAREMGFDNI 322 (488)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCeE
Confidence 577888899999999999 45
No 40
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=93.03 E-value=0.23 Score=44.66 Aligned_cols=55 Identities=27% Similarity=0.471 Sum_probs=45.4
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeE
Q 028948 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 91 lfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v 146 (201)
..|.|+-.+ -...+=+..+|++|||-||+|-.- ++-+.++|..+++...+.|+..
T Consensus 9 IYEKAlp~~-~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~i 70 (287)
T COG3623 9 IYEKALPNG-FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRI 70 (287)
T ss_pred eehhhccCC-CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCc
Confidence 346666554 356777888899999999999764 5889999999999999999987
No 41
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.93 E-value=0.32 Score=47.89 Aligned_cols=137 Identities=14% Similarity=0.147 Sum_probs=94.8
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccccccChhHHHHHHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHcC
Q 028948 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVG 114 (201)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~qg~~~~~eyl~~~k~lG 114 (201)
.-+-.+..++.|.+ -||.+.+....+-+ +-+++-|+.++++|..+... ++-- ...++.+-++.+++.+.|
T Consensus 94 pd~vv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p---~~t~~~~~~~a~~l~~~G 167 (592)
T PRK09282 94 PDDVVEKFVEKAAENGIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSP---VHTIEKYVELAKELEEMG 167 (592)
T ss_pred cchhhHHHHHHHHHCCCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCC---CCCHHHHHHHHHHHHHcC
Confidence 33456666666554 59999988766555 45999999999999877521 1100 123346777778888999
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCeeccc
Q 028948 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKLFLA 184 (201)
Q Consensus 115 Fd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v~~~ 184 (201)
.+.|=|.|-.--+.+++-.++++.+++. +. ..+++...+ ..+++|++ + +.+-=++.-.-+
T Consensus 168 ad~I~i~Dt~G~~~P~~~~~lv~~lk~~-~~--~pi~~H~Hnt~Gla~An~laAv~aGad-----~--vD~ai~g~g~~a 237 (592)
T PRK09282 168 CDSICIKDMAGLLTPYAAYELVKALKEE-VD--LPVQLHSHCTSGLAPMTYLKAVEAGVD-----I--IDTAISPLAFGT 237 (592)
T ss_pred CCEEEECCcCCCcCHHHHHHHHHHHHHh-CC--CeEEEEEcCCCCcHHHHHHHHHHhCCC-----E--EEeeccccCCCc
Confidence 9999999999999999999999999886 32 123333221 45778888 3 444444555667
Q ss_pred cCCceee
Q 028948 185 SNPEIEV 191 (201)
Q Consensus 185 ~~~~~~~ 191 (201)
+||.+|-
T Consensus 238 gn~~~e~ 244 (592)
T PRK09282 238 SQPPTES 244 (592)
T ss_pred CCHhHHH
Confidence 8888763
No 42
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.84 E-value=0.18 Score=45.05 Aligned_cols=90 Identities=18% Similarity=0.052 Sum_probs=68.8
Q ss_pred cccccEEEeeCccccccChh-----------HHHHHHHHHHhCCceec------CccHHHHHHHhCCchHHHHHHHHHHc
Q 028948 51 GQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQV 113 (201)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~-----------~L~eKI~l~~~~gV~v~------~GtlfE~al~qg~~~~~eyl~~~k~l 113 (201)
..-+|.+-+...+|-.+... .+++-|+.++++|..+. .|..++.. ..++.+.++.+.+.++
T Consensus 90 ~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 90 AAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGE--VPPEAVADVAERLFAL 167 (287)
T ss_pred HcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCC--CCHHHHHHHHHHHHHc
Confidence 33577777777666443221 37889999999999874 23333332 3445888899999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHC
Q 028948 114 GFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 114 GFd~IEISdGti~i~~~~r~~lI~~~~~~ 142 (201)
|.+.|-|.|-.--+.+.+-.++++.+++.
T Consensus 168 G~d~i~l~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 168 GCYEISLGDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred CCcEEEeccccCccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999976
No 43
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.80 E-value=0.46 Score=42.06 Aligned_cols=103 Identities=14% Similarity=0.215 Sum_probs=70.9
Q ss_pred chhHHHHHHH-hhcccccEEEeeCccc-cccChhHHHH-----------------HHHHHH--hCCceecCccHHHHHHH
Q 028948 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIEE-----------------VVKRAH--QHDVYVSTGDWAEHLIR 97 (201)
Q Consensus 39 g~~~l~DlLe-~ag~yID~lKfg~GTs-~l~p~~~L~e-----------------KI~l~~--~~gV~v~~GtlfE~al~ 97 (201)
.++.+.+++. ..-.-+|++=+|+=.| .+.+-.++++ .++-.+ ..++++..=|++...++
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~ 103 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQ 103 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhh
Confidence 4445555433 4455699999998542 2222223332 222222 23454443377788877
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 98 qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
.| +++|+++|++.|++.+=|. +||.++..++++.++++|+...+
T Consensus 104 ~G---~e~f~~~~~~aGvdGviip----DLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 104 YG---VERFAADAAEAGVDGLIIP----DLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred cC---HHHHHHHHHHcCCcEEEEC----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 75 9999999999999999996 68999999999999999999855
No 44
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=92.73 E-value=0.22 Score=44.00 Aligned_cols=135 Identities=10% Similarity=0.055 Sum_probs=91.2
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccc-----------ChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHH
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~-----------p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~ 109 (201)
..++-.++. =+|.+-+-..+|-.+ .-+.+++-++.++++|+.|+.+- |.+..-.++.+.++++.
T Consensus 75 ~di~~a~~~---g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 75 DDARIAVET---GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--EDSFRSDLVDLLRVYRA 149 (262)
T ss_pred HHHHHHHHc---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeeCCCCHHHHHHHHHH
Confidence 345555554 456666655444211 12336666799999999887642 33444445678899999
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcC
Q 028948 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTD 179 (201)
Q Consensus 110 ~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~ 179 (201)
+.++|.+.|-+.|-+--+.+++-.++++.+++. +. ..++..+.+ ..+.+|++ + +++--.|
T Consensus 150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~-~~--~~i~~H~Hn~~Gla~an~~~a~~aG~~-----~--vd~s~~G 219 (262)
T cd07948 150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGV-VS--CDIEFHGHNDTGCAIANAYAALEAGAT-----H--IDTTVLG 219 (262)
T ss_pred HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh-cC--CeEEEEECCCCChHHHHHHHHHHhCCC-----E--EEEeccc
Confidence 999999999999999999999999999999886 33 334444322 34667777 3 5555555
Q ss_pred eeccccCCcee
Q 028948 180 KLFLASNPEIE 190 (201)
Q Consensus 180 ~v~~~~~~~~~ 190 (201)
.=.-+-|+.+|
T Consensus 220 lGeraGn~~~e 230 (262)
T cd07948 220 IGERNGITPLG 230 (262)
T ss_pred cccccCCccHH
Confidence 55557777766
No 45
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=92.73 E-value=1.6 Score=35.46 Aligned_cols=98 Identities=17% Similarity=0.374 Sum_probs=68.8
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcC-CCE
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG-FDT 117 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lG-Fd~ 117 (201)
.+.++.++++.+..++..+-|.+|-..+.++ +.+.++.+++.|+.++.=| .| ..+++++...+.| .+.
T Consensus 48 ~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~--l~~li~~~~~~g~~v~i~T-------Ng--~~~~~l~~l~~~g~~~~ 116 (191)
T TIGR02495 48 EVEFLLEFLRSRQGLIDGVVITGGEPTLQAG--LPDFLRKVRELGFEVKLDT-------NG--SNPRVLEELLEEGLVDY 116 (191)
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCcccCcHh--HHHHHHHHHHCCCeEEEEe-------CC--CCHHHHHHHHhcCCCcE
Confidence 6678888888888889999999999888776 8999999999998654311 12 1234556666678 488
Q ss_pred EEecCCcc-c----C-----Ch-hHHHHHHHHHHHCCCeEc
Q 028948 118 IELNVGSL-E----I-----PE-ETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 118 IEISdGti-~----i-----~~-~~r~~lI~~~~~~Gf~v~ 147 (201)
|-||-... + + .. ++-.+.|+.+++.|+.+.
T Consensus 117 v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~ 157 (191)
T TIGR02495 117 VAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFE 157 (191)
T ss_pred EEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEE
Confidence 87764421 1 1 11 145678888888887653
No 46
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=92.71 E-value=1.2 Score=34.66 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=72.6
Q ss_pred HHHHHHHhhccc-ccEEEeeCccccccChhHH--HHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 028948 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L--~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~I 118 (201)
...+..+.+.+. +|++-++.-.......... +....+.+..++++......-... +.+....+.+++.|+|.|
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA----AAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch----hhhhHHHHHHHHcCCCEE
Confidence 334444444443 8888888644333322112 124455666777665543211100 011222468999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHC--CCeEccccccccCCCC---cccccccccccEEEecccCcCe
Q 028948 119 ELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSD---IPSDRDRAFGAYVARAPRSTDK 180 (201)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~--Gf~v~pE~g~k~~~~d---l~ag~~~a~g~~Vi~E~Res~~ 180 (201)
||.......+ +.-.++++.+++. ++.+...+.......+ ...|.+ +|.+..+..+.
T Consensus 89 ~l~~~~~~~~-~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d-----~i~~~~~~~~~ 149 (200)
T cd04722 89 EIHGAVGYLA-REDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVD-----EVGLGNGGGGG 149 (200)
T ss_pred EEeccCCcHH-HHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCC-----EEEEcCCcCCC
Confidence 9999886553 3334677777776 7777666654333222 234555 88887776654
No 47
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=92.67 E-value=0.6 Score=40.94 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=37.2
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCc---eecC-ccHH
Q 028948 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVST-GDWA 92 (201)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~-Gtlf 92 (201)
....+..+++.+.++ +..+.|.+|--.+.+. +.+.++.++++|+ .+.+ |+++
T Consensus 41 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~~--l~~iv~~l~~~g~~~v~i~TNG~ll 97 (302)
T TIGR02668 41 SPEEIERIVRVASEFGVRKVKITGGEPLLRKD--LIEIIRRIKDYGIKDVSMTTNGILL 97 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECcccccccC--HHHHHHHHHhCCCceEEEEcCchHH
Confidence 556777777766554 7889999898777665 6789999998876 3344 6543
No 48
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=92.49 E-value=0.54 Score=45.37 Aligned_cols=135 Identities=10% Similarity=0.074 Sum_probs=94.5
Q ss_pred hHHHHHHHhh-cccccEEEeeCccccccChhHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 028948 41 NVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (201)
Q Consensus 41 ~~l~DlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~eyl~~~k~lGFd 116 (201)
+-.+-+++.| .+-||++-..- .+-.-+.++.-|+.++++|..+.. + |.-- .+..+.+.++.+++.++|.+
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd---~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp---~~t~~y~~~~a~~l~~~Gad 178 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFD---ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP---VHTLNYYLSLVKELVEMGAD 178 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcc---cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC---cCcHHHHHHHHHHHHHcCCC
Confidence 3344556665 55699988775 667778899999999999987542 2 2200 11112466777888899999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCeeccccC
Q 028948 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (201)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v~~~~~ 186 (201)
.|=|.|-.--+.+++-.++|+.+++. . ...++....+ ..+++|++ . +..-=++.-.-++|
T Consensus 179 ~I~IkDtaG~l~P~~v~~Lv~alk~~-~--~~pi~~H~Hnt~GlA~An~laAieAGad-----~--vD~ai~g~g~gagN 248 (468)
T PRK12581 179 SICIKDMAGILTPKAAKELVSGIKAM-T--NLPLIVHTHATSGISQMTYLAAVEAGAD-----R--IDTALSPFSEGTSQ 248 (468)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHhc-c--CCeEEEEeCCCCccHHHHHHHHHHcCCC-----E--EEeeccccCCCcCC
Confidence 99999999999999999999999874 2 2233433322 45778888 3 44444566667889
Q ss_pred Cceee
Q 028948 187 PEIEV 191 (201)
Q Consensus 187 ~~~~~ 191 (201)
|++|.
T Consensus 249 ~~tE~ 253 (468)
T PRK12581 249 PATES 253 (468)
T ss_pred hhHHH
Confidence 99885
No 49
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=92.42 E-value=0.53 Score=43.44 Aligned_cols=98 Identities=18% Similarity=0.374 Sum_probs=74.1
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 028948 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (201)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~ 117 (201)
.+.++..+...+..+ |+=+|+.+|=-.|=.. |.+.|+..+++ ++.|++++-|--.+..+.+.+|+.|++.
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRlTGGEPllR~d--l~eIi~~l~~~-------~~~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRLTGGEPLLRKD--LDEIIARLARL-------GIRDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEEeCCCchhhcC--HHHHHHHHhhc-------ccceEEEecchhhHHHHHHHHHHcCCcE
Confidence 677888888888888 8899999998777554 99999999998 3445555544345778888899999999
Q ss_pred EEecCCccc------CC----hhHHHHHHHHHHHCCCe
Q 028948 118 IELNVGSLE------IP----EETLLRYVRLVKSAGLK 145 (201)
Q Consensus 118 IEISdGti~------i~----~~~r~~lI~~~~~~Gf~ 145 (201)
|-||--|++ |. .++=++=|+.|.+.||.
T Consensus 115 VNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~ 152 (322)
T COG2896 115 VNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLT 152 (322)
T ss_pred EEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCC
Confidence 999988763 22 12334567889999997
No 50
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=92.22 E-value=0.57 Score=46.38 Aligned_cols=154 Identities=11% Similarity=0.037 Sum_probs=109.0
Q ss_pred CCCceeEe----cCCCCCCcchhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHH
Q 028948 23 RFGVTEMR----SPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLI 96 (201)
Q Consensus 23 ~~GlTmV~----DkG~s~~~g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al 96 (201)
++-+-|++ -+||... .-+-++-+++.|.++ ||++-..- +|-.-+.++.-|+.++++|..+..- .+.- .-
T Consensus 75 nt~lqmL~Rg~N~vGy~~~-~d~vv~~~v~~a~~~Gidv~Rifd---~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~-sp 149 (596)
T PRK14042 75 NTQLSMLLRGQNLLGYRNY-ADDVVRAFVKLAVNNGVDVFRVFD---ALNDARNLKVAIDAIKSHKKHAQGAICYTT-SP 149 (596)
T ss_pred CCceEEEeccccccccccC-ChHHHHHHHHHHHHcCCCEEEEcc---cCcchHHHHHHHHHHHHcCCEEEEEEEecC-CC
Confidence 35666777 7777666 666677788875555 99988775 5666677999999999999854332 1110 11
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccc
Q 028948 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRA 166 (201)
Q Consensus 97 ~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a 166 (201)
.+.++.+.++.+.+.++|.+.|=|.|-.--+.+.+-.++|+.++++ +. ..++....+ ..+++|++
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~-~~--ipi~~H~Hnt~Gla~an~laAieaGad-- 224 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA-TG--LPVHLHSHSTSGLASICHYEAVLAGCN-- 224 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh-cC--CEEEEEeCCCCCcHHHHHHHHHHhCCC--
Confidence 3334467777788888999999999999999999999999999986 22 223332221 45778888
Q ss_pred cccEEEecccCcCeeccccCCceee
Q 028948 167 FGAYVARAPRSTDKLFLASNPEIEV 191 (201)
Q Consensus 167 ~g~~Vi~E~Res~~v~~~~~~~~~~ 191 (201)
++..--+|.=+-++||++|.
T Consensus 225 -----~iD~ai~glGg~tGn~~tE~ 244 (596)
T PRK14042 225 -----HIDTAISSFSGGASHPPTEA 244 (596)
T ss_pred -----EEEeccccccCCCCcHhHHH
Confidence 45556666666789999885
No 51
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=92.05 E-value=0.33 Score=46.29 Aligned_cols=135 Identities=14% Similarity=0.135 Sum_probs=92.4
Q ss_pred hHHHHHHHh-hcccccEEEeeCccccccChhHHHHHHHHHHhCCceec--Cc-cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 028948 41 NVLEDIFES-MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TG-DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (201)
Q Consensus 41 ~~l~DlLe~-ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~--~G-tlfE~al~qg~~~~~eyl~~~k~lGFd 116 (201)
+..++.++. +..-||.+-+....+-+. .+++-|+.++++|..+. .. ++-. ...++.+.++.+++.+.|.+
T Consensus 96 dvv~~~v~~A~~~Gvd~irif~~lnd~~---n~~~~v~~ak~~G~~v~~~i~~t~~p---~~~~~~~~~~a~~l~~~Gad 169 (448)
T PRK12331 96 DVVESFVQKSVENGIDIIRIFDALNDVR---NLETAVKATKKAGGHAQVAISYTTSP---VHTIDYFVKLAKEMQEMGAD 169 (448)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcHH---HHHHHHHHHHHcCCeEEEEEEeecCC---CCCHHHHHHHHHHHHHcCCC
Confidence 345555555 444599999887666553 49999999999997542 22 1211 13345778888889999999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCeeccccC
Q 028948 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (201)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v~~~~~ 186 (201)
.|=|.|-.--+.+.+-.++|+.+++. +. ..++....+ ..+++|++ .| ..--++.-.-++|
T Consensus 170 ~I~i~Dt~G~l~P~~v~~lv~alk~~-~~--~pi~~H~Hnt~GlA~AN~laAieaGad-----~v--D~sv~glg~gaGN 239 (448)
T PRK12331 170 SICIKDMAGILTPYVAYELVKRIKEA-VT--VPLEVHTHATSGIAEMTYLKAIEAGAD-----II--DTAISPFAGGTSQ 239 (448)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEecCCCCcHHHHHHHHHHcCCC-----EE--EeeccccCCCcCC
Confidence 99999999999999999999999986 32 123332211 45778888 33 3333344445889
Q ss_pred Cceee
Q 028948 187 PEIEV 191 (201)
Q Consensus 187 ~~~~~ 191 (201)
|++|-
T Consensus 240 ~~tE~ 244 (448)
T PRK12331 240 PATES 244 (448)
T ss_pred HhHHH
Confidence 98774
No 52
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=91.82 E-value=3 Score=32.65 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=63.0
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCC-----ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---
Q 028948 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--- 125 (201)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-----V~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti--- 125 (201)
++.+-|+.|+..+.+.+.+.+.++.++++. ..+...| .+...-++.++.+++.|++.|-||--+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-------n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIET-------RPGTLTEELLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-------CcccCCHHHHHHHHHcCCCeEEEecccCCHH
Confidence 588999999999988766888888888774 2222221 1111236788889999999888876653
Q ss_pred -------cCChhHHHHHHHHHHHCC-CeEcc
Q 028948 126 -------EIPEETLLRYVRLVKSAG-LKAKP 148 (201)
Q Consensus 126 -------~i~~~~r~~lI~~~~~~G-f~v~p 148 (201)
.-+.+...+.|+.+++.| +.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~ 155 (216)
T smart00729 125 VLKAINRGHTVEDVLEAVEKLREAGPIKVST 155 (216)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCcceEE
Confidence 345688889999999999 56544
No 53
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=91.75 E-value=0.65 Score=41.86 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=67.2
Q ss_pred cChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 67 MPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
++.+.|++-|+..++.-=.++ | .++ +... .+++.++.+.+.|.+.|.++-|. |. ++|+++++.|.+
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pf-gvn~~---~~~~--~~~~~~~~~~~~~v~~v~~~~g~---p~----~~i~~lk~~g~~ 111 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPF-GVNIM---LLSP--FVDELVDLVIEEKVPVVTTGAGN---PG----KYIPRLKENGVK 111 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCc-EEeee---cCCC--CHHHHHHHHHhCCCCEEEEcCCC---cH----HHHHHHHHcCCE
Confidence 466789999999987421111 2 221 1122 56888999999999999998663 32 589999999999
Q ss_pred Ecccccc-ccCCCCcccccccccccEEEecccCcCe
Q 028948 146 AKPKFAV-MFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (201)
Q Consensus 146 v~pE~g~-k~~~~dl~ag~~~a~g~~Vi~E~Res~~ 180 (201)
|.+.++- ++...-.++|+| .|++++||.|-
T Consensus 112 v~~~v~s~~~a~~a~~~GaD-----~Ivv~g~eagG 142 (307)
T TIGR03151 112 VIPVVASVALAKRMEKAGAD-----AVIAEGMESGG 142 (307)
T ss_pred EEEEcCCHHHHHHHHHcCCC-----EEEEECcccCC
Confidence 9876643 223344567888 99999998853
No 54
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=91.72 E-value=0.45 Score=40.64 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHCCCeEc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti-----~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
.+++-++.++++||+.||+..+.. +++.++..++-+.+++.|+++.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEE
Confidence 467777777777777777754321 2344455566667777777763
No 55
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=91.66 E-value=0.84 Score=41.13 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=79.5
Q ss_pred chhHHHHHHHh-hcccccEEEeeCccc-cccC-----------------hhHHHHHHHHHHhCCceecCc--cHHHHHHH
Q 028948 39 SHNVLEDIFES-MGQFVDGLKFSGGSH-SLMP-----------------KPFIEEVVKRAHQHDVYVSTG--DWAEHLIR 97 (201)
Q Consensus 39 g~~~l~DlLe~-ag~yID~lKfg~GTs-~l~p-----------------~~~L~eKI~l~~~~gV~v~~G--tlfE~al~ 97 (201)
++..+.+++.. --.-.|++=+|+=.| .+++ .+..-+.++..++.++.+.-+ |++--.+.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~ 108 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFN 108 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHH
Confidence 44566666664 445589999998554 1222 223445666677666765555 78888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccC
Q 028948 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (201)
Q Consensus 98 qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~ 155 (201)
+| +++|++.|++.|+|.+=| .|||.|+..++...++++|+...+-+--...
T Consensus 109 ~G---ie~F~~~~~~~GvdGliv----pDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~ 159 (265)
T COG0159 109 YG---IEKFLRRAKEAGVDGLLV----PDLPPEESDELLKAAEKHGIDPIFLVAPTTP 159 (265)
T ss_pred hh---HHHHHHHHHHcCCCEEEe----CCCChHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 86 999999999999998876 5799999999999999999998654443333
No 56
>PLN02591 tryptophan synthase
Probab=91.60 E-value=0.78 Score=40.61 Aligned_cols=105 Identities=10% Similarity=0.153 Sum_probs=69.6
Q ss_pred chhHHHHHHH-hhcccccEEEeeCccc-cccChhHHH--------------HHHHHHHh----CCceecCccHHHHHHHh
Q 028948 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIE--------------EVVKRAHQ----HDVYVSTGDWAEHLIRN 98 (201)
Q Consensus 39 g~~~l~DlLe-~ag~yID~lKfg~GTs-~l~p~~~L~--------------eKI~l~~~----~gV~v~~GtlfE~al~q 98 (201)
.++.+.+++. ..-..+|++=+|+=.| .+.+-.+++ +-.++.++ ..+++..=|++...++.
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~ 93 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKR 93 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 3344445443 3345699999997443 222222222 22233222 44443333677777766
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc
Q 028948 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 99 g~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
| +++|++.|++.|.+.+=|- +||.++..++++.++++|+...+-+
T Consensus 94 G---~~~F~~~~~~aGv~Gviip----DLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 94 G---IDKFMATIKEAGVHGLVVP----DLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred H---HHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 4 9999999999999999887 5899999999999999999985433
No 57
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=91.36 E-value=0.66 Score=45.69 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=93.7
Q ss_pred hHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 028948 41 NVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 41 ~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~eyl~~~k~lGFd~I 118 (201)
+-.+..++.|.+. ||.+-+....+-+ +-+++-|+.++++|..+... .+.- +=...++.+-++++++.+.|.+.|
T Consensus 91 dvv~~~v~~a~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~~~~~~~~Gad~I 166 (582)
T TIGR01108 91 DVVERFVKKAVENGMDVFRIFDALNDP---RNLQAAIQAAKKHGAHAQGTISYTT-SPVHTLETYLDLAEELLEMGVDSI 166 (582)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCEEEEEEEecc-CCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3455556654444 9998887654443 45999999999999876643 1100 101233567777788889999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCeeccccCCc
Q 028948 119 ELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (201)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v~~~~~~~ 188 (201)
-|.|-.--+.+.+-.++|+.+++. +. ..+++...+ ..+++|++ ++..-=+|.=+-++||.
T Consensus 167 ~i~Dt~G~~~P~~v~~lv~~lk~~-~~--~pi~~H~Hnt~Gla~An~laAveaGa~-------~vd~ai~GlG~~tGn~~ 236 (582)
T TIGR01108 167 CIKDMAGILTPKAAYELVSALKKR-FG--LPVHLHSHATTGMAEMALLKAIEAGAD-------GIDTAISSMSGGTSHPP 236 (582)
T ss_pred EECCCCCCcCHHHHHHHHHHHHHh-CC--CceEEEecCCCCcHHHHHHHHHHhCCC-------EEEeccccccccccChh
Confidence 999999999999999999999876 22 123333221 45778888 45555556556789998
Q ss_pred eee
Q 028948 189 IEV 191 (201)
Q Consensus 189 ~~~ 191 (201)
+|-
T Consensus 237 le~ 239 (582)
T TIGR01108 237 TET 239 (582)
T ss_pred HHH
Confidence 874
No 58
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=91.26 E-value=0.41 Score=44.03 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=69.6
Q ss_pred cccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 028948 53 FVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (201)
Q Consensus 53 yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEIS 121 (201)
-+|.+-+-..+|-++.+ +.+.+-|+.++++|..+..+ +|.+....++.+.++++.+.++|.+.|-+.
T Consensus 84 g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 84 GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 37788887776655421 34668889999999987754 244445556678888889999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHC
Q 028948 122 VGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~ 142 (201)
|-.-.+.+++-.++|+.+++.
T Consensus 162 DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 162 DTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CCCCccCHHHHHHHHHHHhcc
Confidence 999999999999999999876
No 59
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=91.23 E-value=2.7 Score=37.56 Aligned_cols=94 Identities=21% Similarity=0.342 Sum_probs=54.5
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHh-CCc---eecC-ccHHHHHHHhCCchHHHHHHHHHH
Q 028948 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDV---YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (201)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~-~gV---~v~~-GtlfE~al~qg~~~~~eyl~~~k~ 112 (201)
.+..+.++++.+.++ |.-+.|.+|--.+.+. +.+.++.+++ .|+ .+.| |.++ +++++..++
T Consensus 44 s~eei~~~i~~~~~~gv~~V~ltGGEPll~~~--l~~li~~i~~~~gi~~v~itTNG~ll-----------~~~~~~L~~ 110 (334)
T TIGR02666 44 TFEEIERLVRAFVGLGVRKVRLTGGEPLLRKD--LVELVARLAALPGIEDIALTTNGLLL-----------ARHAKDLKE 110 (334)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECccccccCC--HHHHHHHHHhcCCCCeEEEEeCchhH-----------HHHHHHHHH
Confidence 555777776665433 7888999898877664 7788887766 355 3334 5433 223444555
Q ss_pred cCCCEEEecCCccc-----------CChhHHHHHHHHHHHCCCe
Q 028948 113 VGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 113 lGFd~IEISdGti~-----------i~~~~r~~lI~~~~~~Gf~ 145 (201)
.|++.|-||=-+.+ .+.+...+.|+.+++.|+.
T Consensus 111 ~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~ 154 (334)
T TIGR02666 111 AGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLE 154 (334)
T ss_pred cCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCC
Confidence 56665555543321 1234445555556666554
No 60
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.14 E-value=2.2 Score=35.16 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=81.0
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHH-HhC-CceecCcc-HHHHHHHhCCchHHHH-HHHHHHcC
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRA-HQH-DVYVSTGD-WAEHLIRNGPSAFKEY-VEDCKQVG 114 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~-~~~-gV~v~~Gt-lfE~al~qg~~~~~ey-l~~~k~lG 114 (201)
.+.....+.+..+..||.+|+|+ +...+.. + +-|+.. +.| +..+.-++ ++ ++. .| ++.+.+.|
T Consensus 10 ~~~~a~~~~~~l~~~v~~iev~~--~l~~~~g-~-~~i~~l~~~~~~~~i~~d~k~~------d~~---~~~~~~~~~~G 76 (206)
T TIGR03128 10 DIEEALELAEKVADYVDIIEIGT--PLIKNEG-I-EAVKEMKEAFPDRKVLADLKTM------DAG---EYEAEQAFAAG 76 (206)
T ss_pred CHHHHHHHHHHcccCeeEEEeCC--HHHHHhC-H-HHHHHHHHHCCCCEEEEEEeec------cch---HHHHHHHHHcC
Confidence 56677778888899999999964 3333322 3 233333 332 33333332 22 221 34 67788999
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc-ccccCCC----CcccccccccccEEEecccCcC---------e
Q 028948 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKS----DIPSDRDRAFGAYVARAPRSTD---------K 180 (201)
Q Consensus 115 Fd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~-g~k~~~~----dl~ag~~~a~g~~Vi~E~Res~---------~ 180 (201)
.|.|=+.--+ +...-.++++.+++.|+++.+++ +.....+ -.+.|.+ +|.+.+--.+ .
T Consensus 77 ad~i~vh~~~---~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d-----~v~~~pg~~~~~~~~~~~~~ 148 (206)
T TIGR03128 77 ADIVTVLGVA---DDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGAD-----YIGVHTGLDEQAKGQNPFED 148 (206)
T ss_pred CCEEEEeccC---CHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCC-----EEEEcCCcCcccCCCCCHHH
Confidence 9999654322 34455789999999999998874 5432211 1344677 8887642111 0
Q ss_pred e----ccccCCceeeeeccccc
Q 028948 181 L----FLASNPEIEVGVGINKS 198 (201)
Q Consensus 181 v----~~~~~~~~~~~~~~~~~ 198 (201)
+ ...++|.|.|--|||.+
T Consensus 149 i~~l~~~~~~~~i~v~GGI~~~ 170 (206)
T TIGR03128 149 LQTILKLVKEARVAVAGGINLD 170 (206)
T ss_pred HHHHHHhcCCCcEEEECCcCHH
Confidence 1 12246777755577654
No 61
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=91.08 E-value=0.88 Score=38.65 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=70.2
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCcc-HHHHHHHhCCchHHHHHH---HHHHcC
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVE---DCKQVG 114 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gt-lfE~al~qg~~~~~eyl~---~~k~lG 114 (201)
....+.++++..++|+|.+|+|+--..-+..+.+++-++.+++++.++.--. +..+ |+-...|.+ .+.++|
T Consensus 11 ~~~~a~~i~~~~~~~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~~~I~~D~K~~Di-----g~t~~~~~~~~~~~~~~g 85 (226)
T PF00215_consen 11 DLEEALRIADELGDYVDIIKVGTPLFLAYGLEALPEIIEELKERGKPIFLDLKLGDI-----GNTVARYAEAGFAAFELG 85 (226)
T ss_dssp SHHHHHHHHHHHGGGSSEEEEEHHHHHHHCHHHHHHHHHHHHHTTSEEEEEEEE-SS-----HHHHHHHHHSCHHHHTTT
T ss_pred CHHHHHHHHHHhcCcceEEEEChHHHhcCChhhHHHHHHHHHHhcCCEeeeeeeccc-----chHHHHHHHHhhhhhcCC
Confidence 5678889999999999999999877777776689999999999997666531 2211 112333343 457888
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHCC
Q 028948 115 FDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (201)
Q Consensus 115 Fd~IEISdGti~i~~~~r~~lI~~~~~~G 143 (201)
+|++-|+-= .+.+....+++.+++.|
T Consensus 86 aD~vTv~~~---~G~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 86 ADAVTVHPF---AGDDTLEAAVKAAKKHG 111 (226)
T ss_dssp ESEEEEEGT---THHHHHHHHHHHHHHTT
T ss_pred CcEEEEecc---CCHHHHHHHHHHHhccC
Confidence 888887642 34677778888888876
No 62
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=91.05 E-value=0.95 Score=40.28 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=35.8
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhC----CceecC-ccH
Q 028948 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST-GDW 91 (201)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~----gV~v~~-Gtl 91 (201)
.+.++.++++.+.++ +.-+.|.+|--.+.++ +.+.++.+++. .|.+.| |++
T Consensus 50 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~~--l~~li~~i~~~~~~~~i~itTNG~l 106 (331)
T PRK00164 50 SLEEIERLVRAFVALGVRKVRLTGGEPLLRKD--LEDIIAALAALPGIRDLALTTNGYL 106 (331)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcCccC--HHHHHHHHHhcCCCceEEEEcCchh
Confidence 555777777666555 7788999899877754 77888888886 344555 544
No 63
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=90.93 E-value=0.64 Score=45.07 Aligned_cols=157 Identities=11% Similarity=0.022 Sum_probs=100.0
Q ss_pred CCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChh-----------HHHHHHHHHHhCCceecC
Q 028948 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVST 88 (201)
Q Consensus 20 KPR~~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~L~eKI~l~~~~gV~v~~ 88 (201)
+++-.++++.+.+++... -...++.+++ .-+|.+-+...||-++-+. .+++-++.++++|..|..
T Consensus 69 ~~~i~~~~~~~~~~i~~~-~d~~~e~~~~---~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~ 144 (524)
T PRK12344 69 HAKLAAFGSTRRAGVSAE-EDPNLQALLD---AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIF 144 (524)
T ss_pred CcEEEEEeeccccCCCcc-cHHHHHHHHh---CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 344555555555555221 1123333333 3467788887777654333 345889999999999887
Q ss_pred cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------C
Q 028948 89 GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------S 157 (201)
Q Consensus 89 Gt-lfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~ 157 (201)
+. ++.-+....++.+-++++.+.+.|.+.|-|.|-.--+.+.+-.++|+.++++ +. ..+++...+ .
T Consensus 145 ~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~-~~--v~i~~H~HND~GlA~ANsla 221 (524)
T PRK12344 145 DAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA-PG--VPLGIHAHNDSGCAVANSLA 221 (524)
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEECCCCChHHHHHHH
Confidence 63 3333444555567788888899999999999999999999999999999887 32 233333221 3
Q ss_pred CcccccccccccEEEecccCcCeeccccCCcee
Q 028948 158 DIPSDRDRAFGAYVARAPRSTDKLFLASNPEIE 190 (201)
Q Consensus 158 dl~ag~~~a~g~~Vi~E~Res~~v~~~~~~~~~ 190 (201)
.+.+|++ + ++.-=.|.=.-+-|+.+|
T Consensus 222 Ai~aGa~-----~--Vd~Tl~GlGERaGNa~lE 247 (524)
T PRK12344 222 AVEAGAR-----Q--VQGTINGYGERCGNANLC 247 (524)
T ss_pred HHHhCCC-----E--EEEecccccccccCcCHH
Confidence 4677877 3 333333333346677666
No 64
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=90.93 E-value=3.2 Score=31.10 Aligned_cols=95 Identities=23% Similarity=0.413 Sum_probs=69.9
Q ss_pred chhHHHHHHHhhc-cc-ccEEEeeCccccccChhHHHHHHHHHHhC---CceecC---ccHHHHHHHhCCchHHHHHHHH
Q 028948 39 SHNVLEDIFESMG-QF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDC 110 (201)
Q Consensus 39 g~~~l~DlLe~ag-~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~---gV~v~~---GtlfE~al~qg~~~~~eyl~~~ 110 (201)
.+..+.+.+.... +. +..+=|+.|...+.++ ..+++..+++. ++.+.. |++.. +++++.+
T Consensus 29 ~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~--~~~~~~~~~~~~~~~~~i~~~t~~~~~~----------~~~l~~l 96 (166)
T PF04055_consen 29 SPEEILEEIKELKQDKGVKEIFFGGGEPTLHPD--FIELLELLRKIKKRGIRISINTNGTLLD----------EELLDEL 96 (166)
T ss_dssp HHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCH--HHHHHHHHHHCTCTTEEEEEEEESTTHC----------HHHHHHH
T ss_pred CHHHHHHHHHHHhHhcCCcEEEEeecCCCcchh--HHHHHHHHHHhhccccceeeeccccchh----------HHHHHHH
Confidence 4445555555552 32 9999999999999987 67777777775 776654 44433 6888899
Q ss_pred HHcCCCEEEecCCccc-----------CChhHHHHHHHHHHHCCCe
Q 028948 111 KQVGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 111 k~lGFd~IEISdGti~-----------i~~~~r~~lI~~~~~~Gf~ 145 (201)
+++|++.|.+|--+.+ -+.++..+.++.+++.|+.
T Consensus 97 ~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 97 KKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIP 142 (166)
T ss_dssp HHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSE
T ss_pred HhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999998755542 3456778899999999988
No 65
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=90.90 E-value=0.7 Score=44.46 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=88.6
Q ss_pred hcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 028948 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (201)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~ 126 (201)
+..-||.+-+....+-+ +.+++-|+.++++|..+... ++- - ...++.+-++.+.+.+.|.+.|=|.|-.--
T Consensus 105 ~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~-p--~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~ 178 (467)
T PRK14041 105 AEYGLDIIRIFDALNDI---RNLEKSIEVAKKHGAHVQGAISYTVS-P--VHTLEYYLEFARELVDMGVDSICIKDMAGL 178 (467)
T ss_pred HHCCcCEEEEEEeCCHH---HHHHHHHHHHHHCCCEEEEEEEeccC-C--CCCHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 44469999988766653 45899999999999977621 111 0 122346777778888999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCeeccccCCceee
Q 028948 127 IPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEV 191 (201)
Q Consensus 127 i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v~~~~~~~~~~ 191 (201)
+.+.+-.++|+.++++ +.+ .+++...+ ..+++|++ + +..-=++.-.-++||++|-
T Consensus 179 l~P~~v~~Lv~~lk~~-~~v--pI~~H~Hnt~GlA~AN~laAieaGad-----~--vD~sv~~~g~gagN~atE~ 243 (467)
T PRK14041 179 LTPKRAYELVKALKKK-FGV--PVEVHSHCTTGLASLAYLAAVEAGAD-----M--FDTAISPFSMGTSQPPFES 243 (467)
T ss_pred cCHHHHHHHHHHHHHh-cCC--ceEEEecCCCCcHHHHHHHHHHhCCC-----E--EEeeccccCCCCCChhHHH
Confidence 9999999999999986 321 22332211 45778888 3 4444446666688998874
No 66
>PRK09989 hypothetical protein; Provisional
Probab=90.86 E-value=0.5 Score=40.40 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
.+.+.++.++++||+.||+.. ..+.+ ..++-+.+++.|+++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~-~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF-PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC-cccCC---HHHHHHHHHHcCCcEE
Confidence 789999999999999999963 22333 3467777889999985
No 67
>PRK07094 biotin synthase; Provisional
Probab=90.84 E-value=3.5 Score=36.54 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=59.1
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHh-CCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc----
Q 028948 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---- 125 (201)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~-~gV~v~--~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti---- 125 (201)
-+..+-|..|....++.+.+.+.++..++ .++.+. +|. .-++.++..++.|++.|-++--+.
T Consensus 86 g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l~~Lk~aG~~~v~~glEs~~~~~ 154 (323)
T PRK07094 86 GYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEYKAWKEAGADRYLLRHETADKEL 154 (323)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 35677777776555666778888888887 466543 221 235777888888888876654443
Q ss_pred ------cCChhHHHHHHHHHHHCCCeEcc
Q 028948 126 ------EIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
..+.+++.+.|+.+++.|+.|.+
T Consensus 155 ~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~ 183 (323)
T PRK07094 155 YAKLHPGMSFENRIACLKDLKELGYEVGS 183 (323)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 46778888888888888887744
No 68
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=90.81 E-value=0.83 Score=40.87 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=57.4
Q ss_pred EEeeCccccccChhHHHHHHHHHHhCC--ceecCccHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcc--------
Q 028948 57 LKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSL-------- 125 (201)
Q Consensus 57 lKfg~GTs~l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg~~~~~eyl~~~k~lGF-d~IEISdGti-------- 125 (201)
+=|+.||....|.+.|++.++.++++. +.++.++=-+.. +...-+.++++++.|+ ..||+.-=|.
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l----~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV----PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC----CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 668899999999999999999888752 122222211111 1123345555666799 4677743333
Q ss_pred --cCChhHHHHHHHHHHHCCCeEcccc
Q 028948 126 --EIPEETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 126 --~i~~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
..+.++..+.++++++.|++|...+
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v~~~l 183 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKVCSHV 183 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEEEEeE
Confidence 2356677888999999999885543
No 69
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.69 E-value=1.3 Score=43.88 Aligned_cols=149 Identities=10% Similarity=0.056 Sum_probs=99.7
Q ss_pred CCceeEecCCCCCCc----chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCcee-----cCccHHH
Q 028948 24 FGVTEMRSPHYTLSS----SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWAE 93 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~----g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v-----~~GtlfE 93 (201)
.-+.|+. .|..+.+ +-+..+..++.|.+. ||.+-+.-..+ +-+.++.-|+.++++|..+ |+++- +
T Consensus 77 ~~lqml~-Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~ln---d~~~~~~ai~~ak~~G~~~~~~i~yt~~p-~ 151 (593)
T PRK14040 77 TPQQMLL-RGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMN---DPRNLETALKAVRKVGAHAQGTLSYTTSP-V 151 (593)
T ss_pred CeEEEEe-cCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCC---cHHHHHHHHHHHHHcCCeEEEEEEEeeCC-c
Confidence 3444444 6543331 223456667766554 99998885433 3356889999999999863 22311 1
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCccccc
Q 028948 94 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDR 163 (201)
Q Consensus 94 ~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~ 163 (201)
...+.+.++.+.+.++|.+.|=|.|-.--+.+.+-.++|+.+++. +. ..+++...+ ..++||+
T Consensus 152 ----~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~-~~--~pi~~H~Hnt~GlA~An~laAieAGa 224 (593)
T PRK14040 152 ----HTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKR-VD--VPLHLHCHATTGLSTATLLKAIEAGI 224 (593)
T ss_pred ----cCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEECCCCchHHHHHHHHHHcCC
Confidence 123467888888899999999999999999999999999999986 22 223333221 4578888
Q ss_pred ccccccEEEecccCcCeeccccCCceee
Q 028948 164 DRAFGAYVARAPRSTDKLFLASNPEIEV 191 (201)
Q Consensus 164 ~~a~g~~Vi~E~Res~~v~~~~~~~~~~ 191 (201)
+ + +..-=+|.=+-++||.+|.
T Consensus 225 ~-----~--vD~ai~glG~~~Gn~~le~ 245 (593)
T PRK14040 225 D-----G--VDTAISSMSMTYGHSATET 245 (593)
T ss_pred C-----E--EEeccccccccccchhHHH
Confidence 8 4 4444455555689998874
No 70
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=90.39 E-value=2.4 Score=36.70 Aligned_cols=101 Identities=16% Similarity=0.284 Sum_probs=64.2
Q ss_pred hHHHHHHHhhcc-cccEEEeeCcc-ccccChhHHHH-----------------HHHHHHh-CCceecCccHHHHHHHhCC
Q 028948 41 NVLEDIFESMGQ-FVDGLKFSGGS-HSLMPKPFIEE-----------------VVKRAHQ-HDVYVSTGDWAEHLIRNGP 100 (201)
Q Consensus 41 ~~l~DlLe~ag~-yID~lKfg~GT-s~l~p~~~L~e-----------------KI~l~~~-~gV~v~~GtlfE~al~qg~ 100 (201)
..+.+++...-+ -+|++=+|.=. -.+++-+.++. .++..++ .++++..=+.+...++.|
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G- 92 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYG- 92 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhC-
Confidence 444454443333 48999999411 12455455553 3333333 244432213444454443
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 101 ~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
+++|++.|++.|.+.|=+-| +|.|+..++++.++++|+++.+
T Consensus 93 --~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 93 --LERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred --HHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 89999999999999998864 5678888999999999998743
No 71
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=90.27 E-value=2.1 Score=38.40 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=71.5
Q ss_pred chhHHHHHHHhhc-ccccEEEeeCccccccChhHHHHHHHHHHhCCceecC-c-cHHHHHHHh---CCchHHHHHHHHHH
Q 028948 39 SHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-G-DWAEHLIRN---GPSAFKEYVEDCKQ 112 (201)
Q Consensus 39 g~~~l~DlLe~ag-~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-G-tlfE~al~q---g~~~~~eyl~~~k~ 112 (201)
.+.++.+.++.+. .-++-+=|..|.....+.+.+.+.++..++++..+.. . +..|+.... | -..++-++..|+
T Consensus 73 s~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g-~~~~e~l~~Lk~ 151 (340)
T TIGR03699 73 SVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEG-LSLREVLERLKE 151 (340)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCC-CCHHHHHHHHHH
Confidence 4445444443222 2266777777777677788888899999887643332 2 566654322 3 124899999999
Q ss_pred cCCCEEEe-----c-CCcc------cCChhHHHHHHHHHHHCCCeEcc
Q 028948 113 VGFDTIEL-----N-VGSL------EIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 113 lGFd~IEI-----S-dGti------~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
.|++.+-- . +-+. ..+.+++.+.|+.+++.|+++.+
T Consensus 152 aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~ 199 (340)
T TIGR03699 152 AGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTA 199 (340)
T ss_pred cCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 99987641 1 1111 34788899999999999999854
No 72
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=90.25 E-value=0.6 Score=44.04 Aligned_cols=89 Identities=11% Similarity=0.140 Sum_probs=63.8
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCc-hHHHHHHHHHHcCCCEEEecCCcc-----
Q 028948 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDTIELNVGSL----- 125 (201)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~-~~~eyl~~~k~lGFd~IEISdGti----- 125 (201)
-|+-+=||+||..+.+.+.|++.++.++++ .+. + -.|+.+.-+|+ .-++.++.+++.||+.|.|---|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~--~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLA--P--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 488999999999999999999999999885 221 1 12222222232 236889999999999988766554
Q ss_pred -----cCChhHHHHHHHHHHHCCCe
Q 028948 126 -----EIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~ 145 (201)
.-+.++-.+.|+.+++.||.
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~ 214 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRA 214 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCC
Confidence 23456666788888889854
No 73
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=90.22 E-value=0.38 Score=42.92 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=84.3
Q ss_pred ccEEEeeCccccccChh-----------HHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 028948 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (201)
Q Consensus 54 ID~lKfg~GTs~l~p~~-----------~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~eyl~~~k~lGFd~IEI 120 (201)
+|.+.+...+|-.+.+. .+++-|+.++++|..+..+ +|.- .+.-.++.+.++++.+.++|.+.|-|
T Consensus 88 ~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~-~~r~~~~~~~~~~~~~~~~G~~~i~l 166 (280)
T cd07945 88 AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSN-GMRDSPDYVFQLVDFLSDLPIKRIML 166 (280)
T ss_pred CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCC-CCcCCHHHHHHHHHHHHHcCCCEEEe
Confidence 45666666555443322 2566699999999988765 4321 11335668899999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCeeccccCCcee
Q 028948 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIE 190 (201)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v~~~~~~~~~ 190 (201)
.|-.--+.+.+-.++++.+++. + ....++..+.+ ..+.+|++ +| ++-=.|.=.-+.|+++|
T Consensus 167 ~DT~G~~~P~~v~~l~~~l~~~-~-~~~~i~~H~Hnd~Gla~AN~laA~~aGa~-----~v--d~s~~GlGe~aGN~~~E 237 (280)
T cd07945 167 PDTLGILSPFETYTYISDMVKR-Y-PNLHFDFHAHNDYDLAVANVLAAVKAGIK-----GL--HTTVNGLGERAGNAPLA 237 (280)
T ss_pred cCCCCCCCHHHHHHHHHHHHhh-C-CCCeEEEEeCCCCCHHHHHHHHHHHhCCC-----EE--EEecccccccccCccHH
Confidence 9999999999999999999875 2 11223333322 34777877 43 32222222446677666
Q ss_pred e
Q 028948 191 V 191 (201)
Q Consensus 191 ~ 191 (201)
.
T Consensus 238 ~ 238 (280)
T cd07945 238 S 238 (280)
T ss_pred H
Confidence 3
No 74
>PRK01060 endonuclease IV; Provisional
Probab=90.01 E-value=0.82 Score=39.26 Aligned_cols=44 Identities=11% Similarity=0.277 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cc---cCChhHHHHHHHHHHHCCCe
Q 028948 102 AFKEYVEDCKQVGFDTIELNVG---SL---EIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdG---ti---~i~~~~r~~lI~~~~~~Gf~ 145 (201)
.+++.++.++++||+.||+.-+ +. .+++++..++-+.+++.|++
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCC
Confidence 3788889999999999999754 22 45666777777888899998
No 75
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=89.98 E-value=2.4 Score=38.10 Aligned_cols=96 Identities=26% Similarity=0.396 Sum_probs=65.4
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCceec--C-ccHHHHHHHhCCchHHHHHHHHHHcC
Q 028948 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (201)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~--~-GtlfE~al~qg~~~~~eyl~~~k~lG 114 (201)
....+.++++.+.+. +..+-|++|--.+.|. +.+.++.++++|+.+. | |+++ -++.++.+++.|
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~--~~~ii~~~~~~g~~~~l~TNG~ll----------~~e~~~~L~~~g 105 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLHFSGGEPLARPD--LVELVAHARRLGLYTNLITSGVGL----------TEARLDALADAG 105 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCcccccccc--HHHHHHHHHHcCCeEEEEeCCccC----------CHHHHHHHHhCC
Confidence 455667777665443 5678899999888775 8899999999998543 3 5532 145667777888
Q ss_pred CCEEEecCCccc---------CC--hhHHHHHHHHHHHCCCeE
Q 028948 115 FDTIELNVGSLE---------IP--EETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 115 Fd~IEISdGti~---------i~--~~~r~~lI~~~~~~Gf~v 146 (201)
++.|.||=...+ .+ .+.-.+.|+.+++.|+.+
T Consensus 106 ~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v 148 (358)
T TIGR02109 106 LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPL 148 (358)
T ss_pred CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCce
Confidence 888888865542 11 233356677888888776
No 76
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=89.92 E-value=0.67 Score=39.28 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
.+++.++.++++||+.||+..-. ..+..++-+.+++.|+++.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQV 56 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEE
Confidence 68888899999999999986421 2345667777888888874
No 77
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=89.72 E-value=2.3 Score=38.60 Aligned_cols=96 Identities=26% Similarity=0.325 Sum_probs=64.9
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCcee--cC-ccHHHHHHHhCCchHHHHHHHHHHcC
Q 028948 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (201)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v--~~-GtlfE~al~qg~~~~~eyl~~~k~lG 114 (201)
....+.++++.+.++ +-.|-|.+|--.+.|. +.+.++.+++.|+.+ .| |+++ -++.++..++.|
T Consensus 47 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~--~~~il~~~~~~g~~~~i~TNG~ll----------~~~~~~~L~~~g 114 (378)
T PRK05301 47 STEEWIRVLREARALGALQLHFSGGEPLLRKD--LEELVAHARELGLYTNLITSGVGL----------TEARLAALKDAG 114 (378)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCccCCchh--HHHHHHHHHHcCCcEEEECCCccC----------CHHHHHHHHHcC
Confidence 455667777665443 4567888899888765 789999999998854 34 5432 134455667788
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHCCCeE
Q 028948 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 115 Fd~IEISdGti~---------i--~~~~r~~lI~~~~~~Gf~v 146 (201)
++.|.||=...+ . +.+.-.+.|+.+++.|++|
T Consensus 115 ~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v 157 (378)
T PRK05301 115 LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPL 157 (378)
T ss_pred CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCce
Confidence 888888855431 1 3455566778888888876
No 78
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=89.71 E-value=3.2 Score=40.55 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=75.0
Q ss_pred HHHhhcccccEE--EeeCccccccChhHHHHHHHHHHhCC-ceecC--c-cHHHHHHH---------------hCCch-H
Q 028948 46 IFESMGQFVDGL--KFSGGSHSLMPKPFIEEVVKRAHQHD-VYVST--G-DWAEHLIR---------------NGPSA-F 103 (201)
Q Consensus 46 lLe~ag~yID~l--Kfg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~--G-tlfE~al~---------------qg~~~-~ 103 (201)
-|+..|+.+|=+ =|.+||+.-+|.+..+.-|+.++++= -+... + .-+|-+.. -.|+. -
T Consensus 126 ~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~ 205 (522)
T TIGR01211 126 QLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCR 205 (522)
T ss_pred HHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCC
Confidence 345578887743 48999999999999999999998761 11111 1 00222211 12333 4
Q ss_pred HHHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHCCCeEccccccccCC
Q 028948 104 KEYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti----------~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~ 156 (201)
++.++.++++|++.||+.-=|. .-+.++-.+.++++++.||++...+=.-++.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 7899999999999999876655 2455666788999999999985544433333
No 79
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=89.67 E-value=1.3 Score=39.71 Aligned_cols=93 Identities=16% Similarity=0.289 Sum_probs=55.2
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccccccChhHHHHHHHHHHhCC-c---eecC-ccHHHHHHHhCCchHHHHHHHHHH
Q 028948 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-V---YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (201)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-V---~v~~-GtlfE~al~qg~~~~~eyl~~~k~ 112 (201)
...++..+++.+.+ -+..+.|.+|.-.+.+. +.+.++.+++++ + .+.+ |+++ .++++.+++
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~tGGEPllr~d--l~~li~~i~~~~~l~~i~itTNG~ll-----------~~~~~~L~~ 112 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRLTGGEPLVRRG--CDQLVARLGKLPGLEELSLTTNGSRL-----------ARFAAELAD 112 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECcCCCcccc--HHHHHHHHHhCCCCceEEEEeChhHH-----------HHHHHHHHH
Confidence 45566666664433 37889999999777654 778888888765 2 2334 4433 234445556
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHCCC
Q 028948 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 113 lGFd~IEISdGti~----------i~~~~r~~lI~~~~~~Gf 144 (201)
.|++.|-||-.+++ -+.+.-++.|+.+++.|+
T Consensus 113 aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 113 AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 66666666655442 123344555566666665
No 80
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.62 E-value=1.4 Score=39.15 Aligned_cols=108 Identities=12% Similarity=0.171 Sum_probs=71.2
Q ss_pred chhHHHHHHHhh-cccccEEEeeCccc-cccChhHHHHHHHHHH------------------hCCceecCccHHHHHHHh
Q 028948 39 SHNVLEDIFESM-GQFVDGLKFSGGSH-SLMPKPFIEEVVKRAH------------------QHDVYVSTGDWAEHLIRN 98 (201)
Q Consensus 39 g~~~l~DlLe~a-g~yID~lKfg~GTs-~l~p~~~L~eKI~l~~------------------~~gV~v~~GtlfE~al~q 98 (201)
.++.+.+++... -.-+|+|=+|+=.| .+.+-.++++--..+- ++++++..=|++...++.
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 444555544433 34499999997443 2333333333322222 245544333677777777
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccc
Q 028948 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 99 g~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k 153 (201)
| +++|++.|++.|+|.|=|= ++|.++..++++.++++|+...+-+.-.
T Consensus 107 G---~e~F~~~~~~aGvdgviip----DLP~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 107 G---INKFIKKISQAGVKGLIIP----DLPYEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred C---HHHHHHHHHHcCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5 9999999999999999774 5788999999999999999985544433
No 81
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=89.42 E-value=0.55 Score=40.15 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 95 al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
++.+. .+++.++.+++.||+.||+.. ... .+..++-+.+++.|+++..
T Consensus 11 ~~~~~--~l~~~l~~~a~~Gf~~VEl~~-~~~---~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 11 LFGEY--DFLARFEKAAQCGFRGVEFMF-PYD---YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hccCC--CHHHHHHHHHHhCCCEEEEcC-CCC---CCHHHHHHHHHHcCCcEEE
Confidence 34454 699999999999999999954 222 2455667778899999853
No 82
>smart00642 Aamy Alpha-amylase domain.
Probab=89.30 E-value=1.1 Score=36.80 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=36.3
Q ss_pred HHHHHHHcCCCEEEecCCcccC----------------------ChhHHHHHHHHHHHCCCeEccccccccC
Q 028948 106 YVEDCKQVGFDTIELNVGSLEI----------------------PEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (201)
Q Consensus 106 yl~~~k~lGFd~IEISdGti~i----------------------~~~~r~~lI~~~~~~Gf~v~pE~g~k~~ 155 (201)
-+++++++||++|.++-=+-.. +.++..++|+.++++|++|...+=....
T Consensus 24 ~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~ 95 (166)
T smart00642 24 KLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHT 95 (166)
T ss_pred HHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 3557788999999886432111 2388999999999999999776655443
No 83
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=88.90 E-value=3.1 Score=37.40 Aligned_cols=95 Identities=18% Similarity=0.261 Sum_probs=59.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCce--ecC-ccHHHHHHHhCCchHHHHHHHHHHcCC
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VST-GDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~--v~~-GtlfE~al~qg~~~~~eyl~~~k~lGF 115 (201)
.+....+.++..|. -.+-|.+|=-.|.|. +.+.++.+++.|++ +.| |++++. .+ +..++.|.
T Consensus 60 s~ee~~~~i~e~g~--~~V~i~GGEPLL~pd--l~eiv~~~~~~g~~v~l~TNG~ll~~-------~~----~~l~~~~~ 124 (318)
T TIGR03470 60 SVEECLRAVDECGA--PVVSIPGGEPLLHPE--IDEIVRGLVARKKFVYLCTNALLLEK-------KL----DKFEPSPY 124 (318)
T ss_pred CHHHHHHHHHHcCC--CEEEEeCcccccccc--HHHHHHHHHHcCCeEEEecCceehHH-------HH----HHHHhCCC
Confidence 33344555555553 357788888888775 89999999998864 445 666542 12 23355677
Q ss_pred CEEEec-CCcccCC---------hhHHHHHHHHHHHCCCeEcc
Q 028948 116 DTIELN-VGSLEIP---------EETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 116 d~IEIS-dGti~i~---------~~~r~~lI~~~~~~Gf~v~p 148 (201)
..|-|| ||.-+.- -+.-.+.|+.+++.|+.|..
T Consensus 125 ~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v 167 (318)
T TIGR03470 125 LTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTT 167 (318)
T ss_pred cEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEE
Confidence 777777 5532211 12335678888888887644
No 84
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=88.46 E-value=1.2 Score=40.94 Aligned_cols=119 Identities=8% Similarity=-0.038 Sum_probs=80.9
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 028948 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEI 120 (201)
.|-.-.+.+|-+ |+=....++.+.|++.|+-.++. .-.++.=.++ .......+++.++.|.+.+...|.+
T Consensus 18 ~LaaAVS~AGgL------G~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~---~~~~~~~~~~~l~vi~e~~v~~V~~ 88 (320)
T cd04743 18 EFAVAVAEGGGL------PFIALALMRGEQVKALLEETAELLGDKPWGVGIL---GFVDTELRAAQLAVVRAIKPTFALI 88 (320)
T ss_pred HHHHHHHhCCcc------ccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEe---ccCCCcchHHHHHHHHhcCCcEEEE
Confidence 455555666642 33334467788899999988884 3332220220 0011125789999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHCCCeEcccccc-ccCCCCcccccccccccEEEecccCc-Ceec
Q 028948 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV-MFNKSDIPSDRDRAFGAYVARAPRST-DKLF 182 (201)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~-k~~~~dl~ag~~~a~g~~Vi~E~Res-~~v~ 182 (201)
+-|. |. . ++++++.|.+|.+.+.- +....-.++|+| .||.|+.|+ |+++
T Consensus 89 ~~G~---P~----~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD-----~vVaqG~EAGGH~G 139 (320)
T cd04743 89 AGGR---PD----Q-ARALEAIGISTYLHVPSPGLLKQFLENGAR-----KFIFEGRECGGHVG 139 (320)
T ss_pred cCCC---hH----H-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCC-----EEEEecCcCcCCCC
Confidence 8663 32 2 58899999999876653 444566788999 999999999 6665
No 85
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=88.32 E-value=5.7 Score=34.83 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=69.3
Q ss_pred chhHHHHHHHhhcccccEEEe------------eCccccccChhHHHHHHHHHHhCCceecC---ccHHHHHHHhCCchH
Q 028948 39 SHNVLEDIFESMGQFVDGLKF------------SGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAF 103 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKf------------g~GTs~l~p~~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~~~ 103 (201)
.+..+..+.+...+|.|++=+ |.|++.+.+.+.+.+.++..++.+++|+- -+| .....
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~-------~~~~~ 150 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC-------IPLDE 150 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC-------CcchH
Confidence 455666666666777777655 77888899999999999999998887764 123 11134
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~ 142 (201)
.++.+.+.+.|.+.|-|..+.-.-+..+| ++|+++++.
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~~g~~~a~~-~~I~~i~~~ 188 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMYPGKPYADM-DLLKILSEE 188 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCCCCCchhhH-HHHHHHHHh
Confidence 57888899999999999754433222344 889998886
No 86
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=88.27 E-value=2.3 Score=37.99 Aligned_cols=110 Identities=15% Similarity=0.253 Sum_probs=72.8
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccc-cccChhHHHHHH-----------------HHHH--hCCceecCccHHHHHHH
Q 028948 39 SHNVLEDIFESMGQ-FVDGLKFSGGSH-SLMPKPFIEEVV-----------------KRAH--QHDVYVSTGDWAEHLIR 97 (201)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs-~l~p~~~L~eKI-----------------~l~~--~~gV~v~~GtlfE~al~ 97 (201)
.+..+.+++..+-+ -+|++=+|+=.| .+.+-.++++-- +-.+ ..++++..=|++...+.
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 45666666666555 889999997543 233333333322 2222 33455555578888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccC
Q 028948 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (201)
Q Consensus 98 qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~ 155 (201)
.| +++|+++|++.|++.+=| -+||.|+...+.+.++++|+...+-+.-...
T Consensus 102 ~G---~e~F~~~~~~aGvdGlIi----pDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~ 152 (259)
T PF00290_consen 102 YG---IERFFKEAKEAGVDGLII----PDLPPEESEELREAAKKHGLDLIPLVAPTTP 152 (259)
T ss_dssp H----HHHHHHHHHHHTEEEEEE----TTSBGGGHHHHHHHHHHTT-EEEEEEETTS-
T ss_pred cc---hHHHHHHHHHcCCCEEEE----cCCChHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 86 999999999999998877 4688899999999999999998555444333
No 87
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=88.23 E-value=1.4 Score=42.96 Aligned_cols=151 Identities=12% Similarity=0.060 Sum_probs=103.9
Q ss_pred CCceeEe----cCCCCCCcchhHHHHHHHhhc-ccccEEEeeCccccccChhHHHHHHHHHHhCCcee-----cCccHHH
Q 028948 24 FGVTEMR----SPHYTLSSSHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWAE 93 (201)
Q Consensus 24 ~GlTmV~----DkG~s~~~g~~~l~DlLe~ag-~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v-----~~GtlfE 93 (201)
.-+.|.. -+||.-. .-+-.+..++.+. .-||++-+.-..+-+ +.++.-|+.+++.|-.+ |+++-
T Consensus 77 t~lqmL~Rg~N~vGy~~y-~ddvv~~fv~~a~~~Gidi~RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp-- 150 (499)
T PRK12330 77 SRLQMLLRGQNLLGYRHY-EDEVVDRFVEKSAENGMDVFRVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSP-- 150 (499)
T ss_pred CeEEEEEcccccCCccCc-chhHHHHHHHHHHHcCCCEEEEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCC--
Confidence 3455555 4566555 5555666666654 559999998766666 55888999999998854 22321
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccC----------CCCccccc
Q 028948 94 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN----------KSDIPSDR 163 (201)
Q Consensus 94 ~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~----------~~dl~ag~ 163 (201)
...++.+-++.+.+.++|.+.|=|.|-.--+.+++-.++|+.+++. +.....++.... -..+++|+
T Consensus 151 ---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~-~~~~ipI~~H~Hnt~GlA~An~laAieAGa 226 (499)
T PRK12330 151 ---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA-CGEDTRINLHCHSTTGVTLVSLMKAIEAGV 226 (499)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh-CCCCCeEEEEeCCCCCcHHHHHHHHHHcCC
Confidence 2345577788888899999999999999999999999999999986 210111222221 14578888
Q ss_pred ccccccEEEecccCcCeeccccCCceee
Q 028948 164 DRAFGAYVARAPRSTDKLFLASNPEIEV 191 (201)
Q Consensus 164 ~~a~g~~Vi~E~Res~~v~~~~~~~~~~ 191 (201)
+ ++..-=+|.=+-++||+.|-
T Consensus 227 d-------~vDtai~Glg~~aGn~atE~ 247 (499)
T PRK12330 227 D-------VVDTAISSMSLGPGHNPTES 247 (499)
T ss_pred C-------EEEeecccccccccchhHHH
Confidence 8 45555566666778888774
No 88
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.17 E-value=2.6 Score=37.08 Aligned_cols=101 Identities=22% Similarity=0.322 Sum_probs=66.5
Q ss_pred chhHHHHHHH-hhcccccEEEeeCccc-cccChhH-----------------HHHHHHHHHh--CCceecCc-cHHHHHH
Q 028948 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPF-----------------IEEVVKRAHQ--HDVYVSTG-DWAEHLI 96 (201)
Q Consensus 39 g~~~l~DlLe-~ag~yID~lKfg~GTs-~l~p~~~-----------------L~eKI~l~~~--~gV~v~~G-tlfE~al 96 (201)
.+..+.+++. ..-.-+|++=+|.=.| .+.+-.+ +-+.++-.++ .++++. - +...-.+
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~ 100 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIF 100 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHh
Confidence 3445555443 3344599999997221 1111111 2233333443 355544 4 6666666
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEc
Q 028948 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 97 ~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
..| +++|++.|++.|++.|=|=| +|.++..++++.++++|+.+.
T Consensus 101 ~~G---~e~f~~~~~~aGvdgviipD----lp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 101 RKG---VEEFYAKCKEVGVDGVLVAD----LPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred hhh---HHHHHHHHHHcCCCEEEECC----CChHHHHHHHHHHHHCCCcEE
Confidence 664 89999999999999998874 677888999999999999864
No 89
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=87.99 E-value=2.8 Score=37.89 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=52.6
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccc-ccCCCCcccccccccccE
Q 028948 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV-MFNKSDIPSDRDRAFGAY 170 (201)
Q Consensus 92 fE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~-k~~~~dl~ag~~~a~g~~ 170 (201)
.+.++..+.. +++.++.+-+.+.+.|-.+-|.-. .++|+++++.|.+|.+.++- +....-.++|+| .
T Consensus 92 ~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~G~p~------~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D-----~ 159 (330)
T PF03060_consen 92 LELCIEEGVP-FEEQLDVALEAKPDVVSFGFGLPP------PEVIERLHAAGIKVIPQVTSVREARKAAKAGAD-----A 159 (330)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHS--SEEEEESSSC-------HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-S-----E
T ss_pred HHHHHHhCcc-cccccccccccceEEEEeecccch------HHHHHHHHHcCCccccccCCHHHHHHhhhcCCC-----E
Confidence 4555555522 788888888889999999988532 36789999999999887763 333456778899 9
Q ss_pred EEecccCcC
Q 028948 171 VARAPRSTD 179 (201)
Q Consensus 171 Vi~E~Res~ 179 (201)
||+|+.|.|
T Consensus 160 iv~qG~eAG 168 (330)
T PF03060_consen 160 IVAQGPEAG 168 (330)
T ss_dssp EEEE-TTSS
T ss_pred EEEeccccC
Confidence 999998875
No 90
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=87.76 E-value=1.3 Score=37.01 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=26.6
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHH
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eK 75 (201)
.......+++..++++|.+|.|..-..-+..+.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~i 50 (215)
T PRK13813 14 DRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEEL 50 (215)
T ss_pred CHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHHH
Confidence 5667888999999999999999654443444444433
No 91
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=87.55 E-value=1.5 Score=37.04 Aligned_cols=46 Identities=22% Similarity=0.384 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHCCCeEc
Q 028948 102 AFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISd-Gti~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
.+++.++.|+++||+.||++. +....+.++..++.+.+++.|+++.
T Consensus 16 ~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 62 (274)
T COG1082 16 PLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEIT 62 (274)
T ss_pred CHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEE
Confidence 455555555556666666554 2222222224555555555555553
No 92
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=87.30 E-value=4.1 Score=37.06 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=81.5
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhccccc-EEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C--
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVD-GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-- 99 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID-~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-- 99 (201)
|.-+.-|-|..-.+..++++++..-.++. ...+ |.-.-|..+-.++++.++++|| .++.| ++=+..+.. |
T Consensus 54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~ 130 (350)
T PRK08446 54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEI---TTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRI 130 (350)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCceE---EEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 56677776643388889999998877721 1223 2334566667899999999999 78888 676555532 3
Q ss_pred --CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 100 --PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 100 --~~~~~eyl~~~k~lGFd~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
.+.+.+-++.+++.||+.| -+-=|.-.-+.+++.+-++.+.+.+..
T Consensus 131 ~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 131 HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 1345556778888999854 555666667788899999999988755
No 93
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=87.11 E-value=2.5 Score=37.33 Aligned_cols=89 Identities=13% Similarity=0.208 Sum_probs=53.9
Q ss_pred HHHhhcccccEEEeeCccc----cccChhHHHHHHHHHHhCCceecC--ccH---------HHHHHHhCCc----hHHHH
Q 028948 46 IFESMGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST--GDW---------AEHLIRNGPS----AFKEY 106 (201)
Q Consensus 46 lLe~ag~yID~lKfg~GTs----~l~p~~~L~eKI~l~~~~gV~v~~--Gtl---------fE~al~qg~~----~~~ey 106 (201)
.++..++.+|.|=.-|-.. .+.+. ...+.++.+|++++++.+ |+| +..++. ++. -++..
T Consensus 18 ~~~~~~~~lt~v~p~w~~~~~~g~~~~~-~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~-~~~~r~~fi~~i 95 (313)
T cd02874 18 SLRANAPYLTYIAPFWYGVDADGTLTGL-PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLS-NPEARQRLINNI 95 (313)
T ss_pred HHHHhcCCCCEEEEEEEEEcCCCCCCCC-CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhc-CHHHHHHHHHHH
Confidence 4445566666654333211 12222 246889999999999987 554 333332 222 46778
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHH
Q 028948 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 138 (201)
Q Consensus 107 l~~~k~lGFd~IEISdGti~i~~~~r~~lI~~ 138 (201)
++.+++.|||.|+|.=-. ++.+++..++..
T Consensus 96 v~~l~~~~~DGidiDwE~--~~~~d~~~~~~f 125 (313)
T cd02874 96 LALAKKYGYDGVNIDFEN--VPPEDREAYTQF 125 (313)
T ss_pred HHHHHHhCCCcEEEeccc--CCHHHHHHHHHH
Confidence 888899999999996433 345555544433
No 94
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=86.99 E-value=2 Score=29.48 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=35.0
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 100 ~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
....++|++.|++.|+++|=|+|=..--. -.++.+.+++.|++|.|
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~---~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFG---AVEFYKAAKKAGIKPII 59 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccC---HHHHHHHHHHcCCeEEE
Confidence 34789999999999999999999762222 23455666778999987
No 95
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=86.92 E-value=5.5 Score=33.68 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=63.2
Q ss_pred HHHHHhhcccccEEEeeCcccc----ccChhHHHHHHHHHHhCC--ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 028948 44 EDIFESMGQFVDGLKFSGGSHS----LMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (201)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~----l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~ 117 (201)
-+.|..+| ||.+=+|++.+. +++. ..+.++.+++.+ +++. ++..+ . .+.++.+++.|++.
T Consensus 25 ~~~L~~~G--V~~IEvg~~~~~~~~p~~~~--~~~~i~~l~~~~~~~~~~-------~l~~~--~-~~~i~~a~~~g~~~ 90 (265)
T cd03174 25 AEALDEAG--VDSIEVGSGASPKAVPQMED--DWEVLRAIRKLVPNVKLQ-------ALVRN--R-EKGIERALEAGVDE 90 (265)
T ss_pred HHHHHHcC--CCEEEeccCcCccccccCCC--HHHHHHHHHhccCCcEEE-------EEccC--c-hhhHHHHHhCCcCE
Confidence 34455556 999999999986 4443 556666666665 4442 11122 1 67788899999999
Q ss_pred EEecCCcccC------------ChhHHHHHHHHHHHCCCeEcc
Q 028948 118 IELNVGSLEI------------PEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 118 IEISdGti~i------------~~~~r~~lI~~~~~~Gf~v~p 148 (201)
|-|+....+. ..+.-.+.|+.+++.|+.+..
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 133 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEG 133 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999876631 345667899999999998844
No 96
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=86.44 E-value=0.8 Score=40.98 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=53.7
Q ss_pred chhHHHHHHHhhcccccEEEe---eCcccc----ccChhHHHHHHHHHHhCCceecC-cc-HHHHHHHhCCchHHHHHHH
Q 028948 39 SHNVLEDIFESMGQFVDGLKF---SGGSHS----LMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVED 109 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKf---g~GTs~----l~p~~~L~eKI~l~~~~gV~v~~-Gt-lfE~al~qg~~~~~eyl~~ 109 (201)
.+..++..++..+.|---.|+ ..-|-. +|+.+.|++.-++||+|||+++- |. |+|.+...+ ..+.+|.
T Consensus 107 ~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~~~~e~~-- 183 (290)
T PF01212_consen 107 TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALG-VSLAEIA-- 183 (290)
T ss_dssp -HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-HHHHHHH--
T ss_pred CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-ccHHHHh--
Confidence 788999999998864444443 332222 78888999999999999999999 65 999885444 1344444
Q ss_pred HHHcCCCEEEecC
Q 028948 110 CKQVGFDTIELNV 122 (201)
Q Consensus 110 ~k~lGFd~IEISd 122 (201)
-+||.+=||-
T Consensus 184 ---~~~D~v~~~~ 193 (290)
T PF01212_consen 184 ---AGADSVSFGG 193 (290)
T ss_dssp ---TTSSEEEEET
T ss_pred ---hhCCEEEEEE
Confidence 7899999984
No 97
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=86.32 E-value=8.6 Score=34.24 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=70.4
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccccccChhHHHHHHHHHHhCCc--eecCccHHHHHHH---hCCchHHHHHHHHHH
Q 028948 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIR---NGPSAFKEYVEDCKQ 112 (201)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV--~v~~GtlfE~al~---qg~~~~~eyl~~~k~ 112 (201)
.+..+.+.++.+-+ =++-+-|-.|.....+.+.+.+.++..++... .+..=+-.|+.+. .| -..++.++..|+
T Consensus 37 s~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g-~~~~e~l~~Lke 115 (309)
T TIGR00423 37 SLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEG-LSIEEVLKRLKK 115 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 44454444443221 24666666676666677888999999988753 3322255665432 22 135899999999
Q ss_pred cCCCEE-EecCCcc-----------cCChhHHHHHHHHHHHCCCeEcc
Q 028948 113 VGFDTI-ELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 113 lGFd~I-EISdGti-----------~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
.|.+.+ .++.-++ ..+.++|.+.|+.+++.|+++..
T Consensus 116 AGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 116 AGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred cCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 999877 2321111 35778899999999999999843
No 98
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=86.28 E-value=3.9 Score=38.58 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=83.2
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C---
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g--- 99 (201)
+..+.=|-+..-.+..++++++..-.+.++.+-.-=|.-.-|..+-++++++++++|+ .++.| ++-+..+.. +
T Consensus 106 ~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~ 185 (453)
T PRK13347 106 QLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQ 185 (453)
T ss_pred EEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 4445555444226789999999888776532211112234566666899999999999 77778 676655533 1
Q ss_pred -CchHHHHHHHHHHcCCCE--EEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 100 -PSAFKEYVEDCKQVGFDT--IELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 100 -~~~~~eyl~~~k~lGFd~--IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
.+.+.+-++.+++.||+. +-+.-|.=.-+.+++.+-++.+.+.+..-
T Consensus 186 ~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~ 235 (453)
T PRK13347 186 PEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDR 235 (453)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCE
Confidence 124667788889999984 55667777778888999999999887653
No 99
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=85.72 E-value=2 Score=38.94 Aligned_cols=52 Identities=19% Similarity=0.434 Sum_probs=37.0
Q ss_pred CchHHHHHHHHHHcCCCEEEe---------cCCcccCC-hhHHHHHHHHHHHCCCeEccccc
Q 028948 100 PSAFKEYVEDCKQVGFDTIEL---------NVGSLEIP-EETLLRYVRLVKSAGLKAKPKFA 151 (201)
Q Consensus 100 ~~~~~eyl~~~k~lGFd~IEI---------SdGti~i~-~~~r~~lI~~~~~~Gf~v~pE~g 151 (201)
|+..++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++||.|+--.|
T Consensus 23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpG 84 (319)
T PF01301_consen 23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPG 84 (319)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEE
T ss_pred hhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEeccc
Confidence 346788899999999999987 45777776 45778999999999999954444
No 100
>PRK05660 HemN family oxidoreductase; Provisional
Probab=85.62 E-value=5 Score=36.94 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=84.1
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C---
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g--- 99 (201)
|.-+.=|=|..-....++++++....+.+..+-.==|.-.-|..+-+++++.++++|| .++.| ++-+..+.. +
T Consensus 61 ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~ 140 (378)
T PRK05660 61 SIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIH 140 (378)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCC
Confidence 5555555444336788999999988876543211112233467778899999999999 78888 666655532 1
Q ss_pred -CchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 100 -PSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 100 -~~~~~eyl~~~k~lGFd--~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
.+.+.+-++.+++.||+ .+-+.-|.-.-+.+++.+-++.+.+.|..
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPP 189 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 13455567888999998 47778888888899999999999987743
No 101
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=85.55 E-value=9.4 Score=35.18 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=65.3
Q ss_pred ceeEecCCCCCC-cchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC---ccHHHHHHHhCCc
Q 028948 26 VTEMRSPHYTLS-SSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPS 101 (201)
Q Consensus 26 lTmV~DkG~s~~-~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~ 101 (201)
.|++-+||..+. .-.+.|.+.+...-.=-|++=+++---.=+|.++..+.++++|+.|++|-. |-.+..++.++|.
T Consensus 101 ~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~ 180 (310)
T COG1105 101 ETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPW 180 (310)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCc
Confidence 899999998775 244555555666566779999998777788999999999999999998875 5577788887775
Q ss_pred hHHHHHHHHH
Q 028948 102 AFKEYVEDCK 111 (201)
Q Consensus 102 ~~~eyl~~~k 111 (201)
-++-=.+|..
T Consensus 181 lIKPN~~EL~ 190 (310)
T COG1105 181 LIKPNREELE 190 (310)
T ss_pred EEecCHHHHH
Confidence 5444444433
No 102
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.33 E-value=0.54 Score=37.35 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=33.4
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHCCCeE
Q 028948 107 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 107 l~~~k~lGFd~IEISdGti~i~~---~~r~~lI~~~~~~Gf~v 146 (201)
|+.++++||+.||++-....... ++..++.+.+++.|+++
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i 43 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKI 43 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeE
Confidence 57899999999999877765554 57788999999999996
No 103
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=85.32 E-value=10 Score=29.04 Aligned_cols=97 Identities=20% Similarity=0.354 Sum_probs=70.2
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC--Ccee--cCc-cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 028948 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYV--STG-DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~--gV~v--~~G-tlfE~al~qg~~~~~eyl~~~k~lGFd 116 (201)
..+...+.....+..+=|++|...+.+ .+.+.++.+++. ++.+ .+. ..+ + ++.++.+.+.|++
T Consensus 33 ~~~~~~~~~~~~~~~i~~~ggep~~~~--~~~~~i~~~~~~~~~~~~~i~T~~~~~------~----~~~~~~l~~~g~~ 100 (204)
T cd01335 33 ILDIVLEAKERGVEVVILTGGEPLLYP--ELAELLRRLKKELPGFEISIETNGTLL------T----EELLKELKELGLD 100 (204)
T ss_pred HHHHHHHHHhcCceEEEEeCCcCCccH--hHHHHHHHHHhhCCCceEEEEcCcccC------C----HHHHHHHHhCCCc
Confidence 334444556677888889999988888 488889998888 5544 332 222 1 5777888888999
Q ss_pred EEEecCCccc-----------CChhHHHHHHHHHHHCCCeEcccc
Q 028948 117 TIELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 117 ~IEISdGti~-----------i~~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
.|.+|--+.+ .+.++..+.|+++++.|..+...+
T Consensus 101 ~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 145 (204)
T cd01335 101 GVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTL 145 (204)
T ss_pred eEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEE
Confidence 9999877653 344788889999999888775433
No 104
>PRK08445 hypothetical protein; Provisional
Probab=85.27 E-value=11 Score=34.52 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=70.8
Q ss_pred hcccccEEEeeCccccccChhHHHHHHHHHHhCC--ceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCC-----EEEe
Q 028948 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-----TIEL 120 (201)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g--V~v~~--GtlfE~al~qg~~~~~eyl~~~k~lGFd-----~IEI 120 (201)
.....+-+=+.+|-...++.+.+.+.++..+++. +.+.. -+=..++...+.-..++-++..|+.|++ .+|+
T Consensus 86 ~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~ 165 (348)
T PRK08445 86 LAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEI 165 (348)
T ss_pred HHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceee
Confidence 3444677777888888888888999999888875 44421 2223334332312458999999999998 2786
Q ss_pred cCCc----c---cCChhHHHHHHHHHHHCCCeEcc
Q 028948 121 NVGS----L---EIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 121 SdGt----i---~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
++-. + ..+.++|.+.++.+++.|+++..
T Consensus 166 ~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~s 200 (348)
T PRK08445 166 LSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTA 200 (348)
T ss_pred CCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeee
Confidence 6642 2 57888999999999999999944
No 105
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=85.05 E-value=5.2 Score=37.15 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=81.0
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C---
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g--- 99 (201)
|.-++-|-+....+..++.+++..-.+++..+-.-=|.-.-|..+=.++++.++++|| .++.| ++-+..+.. |
T Consensus 69 ~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~ 148 (400)
T PRK07379 69 TVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSH 148 (400)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCC
Confidence 4445555333227889999999988876543211122334566667899999999999 88888 677777654 2
Q ss_pred -CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 100 -PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 100 -~~~~~eyl~~~k~lGFd~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
++.+.+-++.+++.||+.| -+--|.=.-+.+++.+-++.+.+.+..
T Consensus 149 ~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~ 197 (400)
T PRK07379 149 RVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPT 197 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCC
Confidence 2346667788899999954 455555555677788888888877644
No 106
>PRK12999 pyruvate carboxylase; Reviewed
Probab=85.02 E-value=2.4 Score=44.95 Aligned_cols=140 Identities=8% Similarity=0.048 Sum_probs=94.5
Q ss_pred chhHHHHHHHhh-cccccEEEeeCccccccChhHHHHHHHHHHhCCc--eecCc--cHHHHHHH--hCCchHHHHHHHHH
Q 028948 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTG--DWAEHLIR--NGPSAFKEYVEDCK 111 (201)
Q Consensus 39 g~~~l~DlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV--~v~~G--tlfE~al~--qg~~~~~eyl~~~k 111 (201)
+-+-.+++++.+ ..-||.+-+.-...- -+.++.-|+.++++|- .++-+ |.+.-+.. ..++.+-++.+++.
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd---~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~ 701 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNW---VENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELE 701 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCCh---HHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHH
Confidence 445677766654 455999998864444 3559999999999993 23222 12222222 23345667777888
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCee
Q 028948 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKL 181 (201)
Q Consensus 112 ~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v 181 (201)
++|.+.|=|.|-.--+.+.+-.++|+.++++ +.+ .++....+ ..+++|++ ++..-=+|.=
T Consensus 702 ~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~-~~i--pi~~H~Hnt~Gla~an~laA~~aGad-------~vD~av~glg 771 (1146)
T PRK12999 702 KAGAHILAIKDMAGLLKPAAAYELVSALKEE-VDL--PIHLHTHDTSGNGLATYLAAAEAGVD-------IVDVAVASMS 771 (1146)
T ss_pred HcCCCEEEECCccCCCCHHHHHHHHHHHHHH-cCC--eEEEEeCCCCchHHHHHHHHHHhCCC-------EEEecchhhc
Confidence 9999999999999999999999999999986 222 12222111 45788888 4444455555
Q ss_pred ccccCCceee
Q 028948 182 FLASNPEIEV 191 (201)
Q Consensus 182 ~~~~~~~~~~ 191 (201)
+.++||.+|.
T Consensus 772 ~~tgn~~le~ 781 (1146)
T PRK12999 772 GLTSQPSLNS 781 (1146)
T ss_pred CCcCCHHHHH
Confidence 6799998874
No 107
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=85.01 E-value=2.7 Score=37.30 Aligned_cols=97 Identities=19% Similarity=0.109 Sum_probs=70.4
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceec------CccHHHHHHHhCCchH
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~------~GtlfE~al~qg~~~~ 103 (201)
+.++..++.- +|.+-+...+|-.+.. +.+.+.++.++++|..+. .|..++--. .++.+
T Consensus 77 ~dv~~A~~~g---~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~~ 151 (274)
T cd07938 77 RGAERALAAG---VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPERV 151 (274)
T ss_pred HHHHHHHHcC---cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHHH
Confidence 3455555543 6777777666643222 446777999999999873 232222111 33477
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~ 142 (201)
.++.+.+.++|.+.|-+.|-.-.+.+.+-.++|+.++++
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 152 AEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999986
No 108
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=84.84 E-value=3.1 Score=37.52 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHhCCceec--CccHHHHHHHhCC----chHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHH
Q 028948 69 KPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGP----SAFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRL 138 (201)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~----~~~~eyl~~~k~lGFd~IEISdGti~i~----~~~r~~lI~~ 138 (201)
...+...|.-+|+.|++|. .|||-...+.+.. .-++.|.+.++..|||.|.|.==.-... .+.+.++|+.
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~ 132 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALAL 132 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHH
Confidence 4568889999999998655 4887765554332 2356788899999999999843222222 2678888988
Q ss_pred HHHC--CCeE
Q 028948 139 VKSA--GLKA 146 (201)
Q Consensus 139 ~~~~--Gf~v 146 (201)
++++ ++++
T Consensus 133 Lq~~~p~l~v 142 (294)
T cd06543 133 LQKEYPDLKI 142 (294)
T ss_pred HHHHCCCcEE
Confidence 8887 4544
No 109
>PRK05926 hypothetical protein; Provisional
Probab=84.76 E-value=12 Score=34.80 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=61.3
Q ss_pred eeCccccccChhHHHHHHHHHHhC--CceecCccHHHHHHHhC--CchHHHHHHHHHHcCCCEE-----EecCCcc----
Q 028948 59 FSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTI-----ELNVGSL---- 125 (201)
Q Consensus 59 fg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg--~~~~~eyl~~~k~lGFd~I-----EISdGti---- 125 (201)
+-.|-..-.+-+.+.+.++..+++ ++.++.=+-.|+++... .-..++.++..|+.|++.+ |+.+-++
T Consensus 120 iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~ 199 (370)
T PRK05926 120 IVAGCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETL 199 (370)
T ss_pred EEeCcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhh
Confidence 334555555667788888888876 67655434456665432 1246889999999999764 3333333
Q ss_pred ---cCChhHHHHHHHHHHHCCCeEcc
Q 028948 126 ---EIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 126 ---~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
..+.++|++.++.+++.|+++..
T Consensus 200 ~p~~~t~~e~l~~i~~a~~~Gi~~~s 225 (370)
T PRK05926 200 APGRLSSQGFLEIHKTAHSLGIPSNA 225 (370)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcccC
Confidence 34678999999999999999843
No 110
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=84.52 E-value=2.1 Score=39.69 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=80.0
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccc--------ChhH---HHHHHHHHHhCCceec------CccHHHHHHHhCCchH
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHSLM--------PKPF---IEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~--------p~~~---L~eKI~l~~~~gV~v~------~GtlfE~al~qg~~~~ 103 (201)
..++..++. =+|.+-+...+|-.+ +++. +++.|++++++|..+. .|..++.. -+++.+
T Consensus 125 ~die~A~~~---g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r--~~~~~l 199 (347)
T PLN02746 125 KGFEAAIAA---GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP--VPPSKV 199 (347)
T ss_pred HHHHHHHHc---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC--CCHHHH
Confidence 345555554 356666665554322 2333 4489999999999873 34333322 345688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccc
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRD 164 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~ 164 (201)
.++.+.+.++|.+.|-|.|-.--+.+.+-.++++.+++. +. .++++..+.+ ..+++|++
T Consensus 200 ~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~-~~-~~~i~~H~Hnd~GlA~AN~lAA~~aGa~ 268 (347)
T PLN02746 200 AYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV-VP-VDKLAVHFHDTYGQALANILVSLQMGIS 268 (347)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh-CC-CCeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 899999999999999999999999999999999999876 32 1235554332 34777877
No 111
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=84.40 E-value=6.5 Score=35.01 Aligned_cols=102 Identities=22% Similarity=0.220 Sum_probs=64.8
Q ss_pred HHHHHHHhhcccccEEEeeCccccccC--hhHHHHHHHHHHh--CCceecCccHHHHHHHhCCchHH--HHHHHHHHcCC
Q 028948 42 VLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQ--HDVYVSTGDWAEHLIRNGPSAFK--EYVEDCKQVGF 115 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p--~~~L~eKI~l~~~--~gV~v~~GtlfE~al~qg~~~~~--eyl~~~k~lGF 115 (201)
.....+..+..=+||+|+|.--..=.. -+.++..++-.++ .+..+..-.+....- -| .++ +..+.+++.||
T Consensus 69 ~~~aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r-~~--~~~p~~l~~~a~~aG~ 145 (235)
T PF04476_consen 69 ASLAALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQR-VG--SISPLDLPEIAAEAGF 145 (235)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhh-hc--CCCHHHHHHHHHHcCC
Confidence 344566666667999999952110000 1123333333333 345555556666432 22 333 55788999999
Q ss_pred CEEEecCC-----c--ccCChhHHHHHHHHHHHCCCeE
Q 028948 116 DTIELNVG-----S--LEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 116 d~IEISdG-----t--i~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+.+=|... + --++.++..++++.++++|+.+
T Consensus 146 ~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 146 DGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred CEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 99988643 2 3689999999999999999987
No 112
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=84.20 E-value=5.6 Score=36.46 Aligned_cols=117 Identities=11% Similarity=0.152 Sum_probs=83.1
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEE-EeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-C
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P 100 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~l-Kfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~ 100 (201)
|.-++=|=|..-.+..++.+|+....+++-. -+ |.-..|..+-.+++++++++|+ .++.| ++-+..+.. | +
T Consensus 59 tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~ 135 (353)
T PRK05904 59 TIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEF---TIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT 135 (353)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCCeE---EEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 5556655443337789999999988875311 12 3445577777899999999999 78778 666666533 2 1
Q ss_pred ---chHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 101 ---SAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 101 ---~~~~eyl~~~k~lGFd--~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+.+.+-++.|++.||+ .+.+--|.=.-+.+++.+.++.+.+.+..-
T Consensus 136 ~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~ 186 (353)
T PRK05904 136 HTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKINH 186 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCE
Confidence 2455667788889998 456677777888888989999998887653
No 113
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=83.98 E-value=5.7 Score=35.77 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=69.1
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChh---HHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHH--HcCC
Q 028948 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKP---FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK--QVGF 115 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~---~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~eyl~~~k--~lGF 115 (201)
+.+.+++..++++.++|.++.-..-+-.+ .|++.|+.+++.|++|..- =+..+- +-...|.+.+- ++|+
T Consensus 42 f~~~ivd~~~~~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~-----nTv~~ya~a~~~~~~g~ 116 (278)
T PRK00125 42 FCRIIVDATADLVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAGVLVIADAKRGDIG-----STAEAYAKAAFESPLEA 116 (278)
T ss_pred HHHHHHHhcCCcccEEeccHHHHHhcCchhhhHHHHHHHHHHHCCCcEEEEeecCChH-----HHHHHHHHHHhcCccCC
Confidence 34899999999999999999776666544 6889999999999988764 244442 23455666666 7999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHCC
Q 028948 116 DTIELNVGSLEIPEETLLRYVRLVKSAG 143 (201)
Q Consensus 116 d~IEISdGti~i~~~~r~~lI~~~~~~G 143 (201)
|+|-|+- -+..+....+++.+++.|
T Consensus 117 DavTVhp---~~G~d~l~~~~~~~~~~~ 141 (278)
T PRK00125 117 DAVTVSP---YMGFDSLEPYLEYAEEHG 141 (278)
T ss_pred cEEEECC---cCCHHHHHHHHHHHHhcC
Confidence 9999984 455666666777665543
No 114
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=83.78 E-value=5.4 Score=36.90 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=30.8
Q ss_pred chhHHHHHHHhh-cccccEEEeeCccccccChhHHHHHHHHHHhC-Cc
Q 028948 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DV 84 (201)
Q Consensus 39 g~~~l~DlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV 84 (201)
...++.++++.+ ..-+..|.|.+|--.+.+. +.+.++.+++. |+
T Consensus 91 s~eei~~~i~~~~~~Gv~~I~~tGGEPllr~d--l~eli~~l~~~~gi 136 (373)
T PLN02951 91 SQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKD--IEDICLQLSSLKGL 136 (373)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcchhh--HHHHHHHHHhcCCC
Confidence 455666665543 2346788999998777664 88888888886 65
No 115
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=83.75 E-value=2.9 Score=38.32 Aligned_cols=51 Identities=25% Similarity=0.304 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCceecC-ccHHHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCC
Q 028948 72 IEEVVKRAHQHDVYVST-GDWAEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVG 123 (201)
Q Consensus 72 L~eKI~l~~~~gV~v~~-GtlfE~al~qg~~----~~~eyl~~~k~lGFd~IEISdG 123 (201)
=.+-+..||++||+|.+ |++....+. ++. -++.-++.+++.|||.|.|.==
T Consensus 66 ~~~~~~~A~~~~v~v~~~~~~~~~~l~-~~~~R~~fi~siv~~~~~~gfDGIdIDwE 121 (358)
T cd02875 66 DDELLCYAHSKGVRLVLKGDVPLEQIS-NPTYRTQWIQQKVELAKSQFMDGINIDIE 121 (358)
T ss_pred CHHHHHHHHHcCCEEEEECccCHHHcC-CHHHHHHHHHHHHHHHHHhCCCeEEEccc
Confidence 35788899999999998 543222221 211 4688899999999999998643
No 116
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=83.50 E-value=6.9 Score=35.53 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=79.8
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCc-cccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C--
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGG-SHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-- 99 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~G-Ts~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-- 99 (201)
|..+.=|=|..-.+..++++++....+.+.- .+.- |.-.-|..+=.++++.++++|| .++.| ++=+..+.. |
T Consensus 54 ~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~-~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~ 132 (360)
T TIGR00539 54 SIFIGGGTPNTLSVEAFERLFESIYQHASLS-DDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQ 132 (360)
T ss_pred EEEeCCCchhcCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCC
Confidence 6667766543226788999998887766421 1111 2223455556799999999999 67778 565444422 2
Q ss_pred --CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 100 --PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 100 --~~~~~eyl~~~k~lGFd~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
.+.+.+-++.+++.||+.| -+.-|.-.-+.+++.+.++.+.+.|..
T Consensus 133 ~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~ 182 (360)
T TIGR00539 133 HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPIN 182 (360)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCC
Confidence 1345566778889999865 447777777888899999999988864
No 117
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=82.56 E-value=5.6 Score=35.11 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=61.0
Q ss_pred HHHHHHhhcccccEEEeeCccc--------cccChhHHHHHHHHHHhCCceecCccHHH----HHHHhCC-chHHHHHHH
Q 028948 43 LEDIFESMGQFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQHDVYVSTGDWAE----HLIRNGP-SAFKEYVED 109 (201)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs--------~l~p~~~L~eKI~l~~~~gV~v~~GtlfE----~al~qg~-~~~~eyl~~ 109 (201)
.-..|..+| ||.+=+|++++ .-.|.+.+++..+...+-.+ ..|.= .-+..-| +-.++.++.
T Consensus 26 ia~~L~~~G--v~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l----~~~~r~~~~~~~~~~p~~~~~~di~~ 99 (275)
T cd07937 26 IAEALDEAG--FFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPL----QMLLRGQNLVGYRHYPDDVVELFVEK 99 (275)
T ss_pred HHHHHHHcC--CCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCce----ehhcccccccCccCCCcHHHHHHHHH
Confidence 345677788 99999999874 33343444443333222111 22210 0000111 237889999
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 110 ~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
+.+.|.+.|-|+...-++ +.-...|+.+++.|++|..
T Consensus 100 ~~~~g~~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 100 AAKNGIDIFRIFDALNDV--RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHcCCCEEEEeecCChH--HHHHHHHHHHHHCCCeEEE
Confidence 999999999997765553 4556799999999998764
No 118
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=82.56 E-value=1 Score=35.77 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=59.1
Q ss_pred ccEEEeeCccccccC--hhHHHHHHHHHHhCCceecCc---c-HHHHH---------HHhCCchHHHHHHHHHHcCCCEE
Q 028948 54 VDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVSTG---D-WAEHL---------IRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 54 ID~lKfg~GTs~l~p--~~~L~eKI~l~~~~gV~v~~G---t-lfE~a---------l~qg~~~~~eyl~~~k~lGFd~I 118 (201)
.|++-+......... .+.+++..++++++||.+..- + +...- -.+.-+.+++.++.|+.+|.+.|
T Consensus 9 ~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i 88 (213)
T PF01261_consen 9 FDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYI 88 (213)
T ss_dssp HSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEE
T ss_pred CCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCce
Confidence 455555544433333 245889999999999984431 1 11100 00001268999999999999999
Q ss_pred EecCC----cccCChh--------HHHHHHHHHHHCCCeEcccc
Q 028948 119 ELNVG----SLEIPEE--------TLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 119 EISdG----ti~i~~~--------~r~~lI~~~~~~Gf~v~pE~ 150 (201)
=+.-| ....+.+ ...++.+.+++.|+++..|-
T Consensus 89 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 89 VVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp EEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred eecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 99977 1222222 33566677888888876653
No 119
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=82.18 E-value=6.2 Score=36.51 Aligned_cols=92 Identities=12% Similarity=0.156 Sum_probs=62.7
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 028948 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (201)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~eyl~~~k~lGFd~IEISdGti~---- 126 (201)
.-|+-|=||+||..+++.+.|++.++..+++= +..+. .|+.+.-+|+. -++.++.++++||+.|.|---|.+
T Consensus 72 ~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~-~~~~~--~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 72 RQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL-PLDPD--AEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred CceeEEEECCCCcCCCCHHHHHHHHHHHHHhC-CCCCC--CeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 45889999999999999999999999998651 11111 23333333322 357899999999999888655441
Q ss_pred ------CChhHHHHHHHHHHHCCCeE
Q 028948 127 ------IPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~v 146 (201)
-+.++-.+.|+.+++.+..|
T Consensus 149 ~~l~R~~~~~~~~~~i~~~~~~~~~v 174 (394)
T PRK08898 149 KALGRIHDGAEARAAIEIAAKHFDNF 174 (394)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCce
Confidence 23455556788877765444
No 120
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=82.03 E-value=2.3 Score=35.58 Aligned_cols=110 Identities=13% Similarity=0.190 Sum_probs=62.5
Q ss_pred HHhhcccccEEEeeCccccccChhHHHHHHHHHHhCC-ceecCccHHHHHHHhCC-chHHHHHHHHHHcCCCEEEecCCc
Q 028948 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIELNVGS 124 (201)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~GtlfE~al~qg~-~~~~eyl~~~k~lGFd~IEISdGt 124 (201)
+..+| ++.++ ++- .++.+.+.+.++..++.- .++-.+.++ +.+ ...+++++.|+++|.+.|.++++
T Consensus 22 ~~~~G-~ig~i----~~~-~~~~~~~~~~~~~i~~~~~~~~~v~~i~-----~~~~~~~~~~~~~~~~~g~d~v~l~~~- 89 (236)
T cd04730 22 VSNAG-GLGFI----GAG-YLTPEALRAEIRKIRALTDKPFGVNLLV-----PSSNPDFEALLEVALEEGVPVVSFSFG- 89 (236)
T ss_pred HHhCC-Ccccc----CCC-CCCHHHHHHHHHHHHHhcCCCeEEeEec-----CCCCcCHHHHHHHHHhCCCCEEEEcCC-
Confidence 33344 55665 222 234455666677666542 221111111 111 26889999999999999999988
Q ss_pred ccCChhHHHHHHHHHHHCCCeEcccccc-ccCCCCcccccccccccEEEecccCcC
Q 028948 125 LEIPEETLLRYVRLVKSAGLKAKPKFAV-MFNKSDIPSDRDRAFGAYVARAPRSTD 179 (201)
Q Consensus 125 i~i~~~~r~~lI~~~~~~Gf~v~pE~g~-k~~~~dl~ag~~~a~g~~Vi~E~Res~ 179 (201)
.+ .++++.+++.++.+.+-+.- .....-.++|++ ++++.++.++
T Consensus 90 --~~----~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad-----~i~~~~~~~~ 134 (236)
T cd04730 90 --PP----AEVVERLKAAGIKVIPTVTSVEEARKAEAAGAD-----ALVAQGAEAG 134 (236)
T ss_pred --CC----HHHHHHHHHcCCEEEEeCCCHHHHHHHHHcCCC-----EEEEeCcCCC
Confidence 22 35677777788887553311 111122335566 8888776443
No 121
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=82.00 E-value=2.4 Score=35.47 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc--------------cC-----ChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSL--------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti--------------~i-----~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
+.+=|+++++|||++|++|-=+- .+ +.++..+||+.++++|++|.-.+=..+
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH 76 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNH 76 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSE
T ss_pred HHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccc
Confidence 34447788999999999873111 11 247899999999999999965554443
No 122
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=81.87 E-value=0.91 Score=48.09 Aligned_cols=115 Identities=12% Similarity=0.195 Sum_probs=78.2
Q ss_pred cChhHHHHHHHHHHhCCceecC---c-cHHHHH-----------------HHhC-----C-------chHHHHHHHHHHc
Q 028948 67 MPKPFIEEVVKRAHQHDVYVST---G-DWAEHL-----------------IRNG-----P-------SAFKEYVEDCKQV 113 (201)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~---G-tlfE~a-----------------l~qg-----~-------~~~~eyl~~~k~l 113 (201)
||.++++.-++.++++||.++- . -|++.+ +..- | +.+-++.+++.++
T Consensus 622 ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~ 701 (1143)
T TIGR01235 622 YPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKA 701 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHc
Confidence 7788888888888888886542 1 233322 1110 1 1233566667889
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC----------CCcccccccccccEEEecccCcCeecc
Q 028948 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK----------SDIPSDRDRAFGAYVARAPRSTDKLFL 183 (201)
Q Consensus 114 GFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~----------~dl~ag~~~a~g~~Vi~E~Res~~v~~ 183 (201)
|.+.|=|.|-.--+.+..-.++|+.++++ +. ..++..... ..+++|++ ++..--+|.-+.
T Consensus 702 Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~-~~--~pi~~H~Hdt~Gla~an~laA~eaGad-------~vD~ai~gl~G~ 771 (1143)
T TIGR01235 702 GAHILGIKDMAGLLKPAAAKLLIKALREK-TD--LPIHFHTHDTSGIAVASMLAAVEAGVD-------VVDVAVDSMSGL 771 (1143)
T ss_pred CCCEEEECCCcCCcCHHHHHHHHHHHHHh-cC--CeEEEEECCCCCcHHHHHHHHHHhCCC-------EEEecchhhcCC
Confidence 99999999999999999999999999986 32 223332211 45778888 466667777778
Q ss_pred ccCCceee
Q 028948 184 ASNPEIEV 191 (201)
Q Consensus 184 ~~~~~~~~ 191 (201)
++||.+|.
T Consensus 772 ts~p~~e~ 779 (1143)
T TIGR01235 772 TSQPSLGA 779 (1143)
T ss_pred CCCHhHHH
Confidence 88888764
No 123
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=81.79 E-value=2.4 Score=36.49 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHcCCCEEEec
Q 028948 102 AFKEYVEDCKQVGFDTIELN 121 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEIS 121 (201)
.+++-++.++++||+.||++
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~ 30 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMF 30 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEE
Confidence 45555555555555555554
No 124
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=81.73 E-value=3.5 Score=37.17 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc------------cCChhHHHHHHHHHHHCCCeE
Q 028948 101 SAFKEYVEDCKQVGFDTIELNVGSL------------EIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 101 ~~~~eyl~~~k~lGFd~IEISdGti------------~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+..++|++.|.++||++|-|++|=- ..+..+..++|+.++++|..|
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi 89 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGI 89 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCE
Confidence 3689999999999999999999975 578899999999999999766
No 125
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=81.43 E-value=5.6 Score=36.26 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=78.8
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-C-
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P- 100 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~- 100 (201)
|.-++=|-+..-++..++++++....+++...---=|.-.-|..+-.++++.++++|+ .++.| ++-+..+.. + +
T Consensus 62 ~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~ 141 (375)
T PRK05628 62 TVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTH 141 (375)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 4444445433226789999999887765432211112223466666799999999999 77778 666666543 1 1
Q ss_pred --chHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 101 --SAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 101 --~~~~eyl~~~k~lGFd~IEI--SdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+.+.+-++.+++.||+.|-+ --|.=.-+.+++.+-++.+.+.+..-
T Consensus 142 s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~ 191 (375)
T PRK05628 142 TPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDH 191 (375)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCE
Confidence 23555667788899985543 35666677888888899998887543
No 126
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=81.38 E-value=7.3 Score=36.68 Aligned_cols=120 Identities=15% Similarity=0.113 Sum_probs=80.3
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C---
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g--- 99 (201)
|..+.=|-+....+..++++++.+..+.++.+-.-=|.-.-|..+-++++++++++|+ .++.| ++-+..+.. +
T Consensus 105 ~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~ 184 (453)
T PRK09249 105 QLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQ 184 (453)
T ss_pred EEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 4445445433226788999999887765432100012234455566899999999999 77778 666555432 1
Q ss_pred -CchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 100 -PSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 100 -~~~~~eyl~~~k~lGFd--~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
.+.+.+-++.+++.||+ .+-+.-|.-.-+.+++.+.++.+.+.|..-
T Consensus 185 ~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~ 234 (453)
T PRK09249 185 PFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPDR 234 (453)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCE
Confidence 12456677888899997 455667777888999999999999988653
No 127
>PRK09061 D-glutamate deacylase; Validated
Probab=81.21 E-value=11 Score=36.16 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=67.7
Q ss_pred HHHHHH---hhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC-c---cHHH-HHHHhCCchHHHHHHHHHHcC
Q 028948 43 LEDIFE---SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-G---DWAE-HLIRNGPSAFKEYVEDCKQVG 114 (201)
Q Consensus 43 l~DlLe---~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-G---tlfE-~al~qg~~~~~eyl~~~k~lG 114 (201)
++++++ .+| .+++|.+-.-..-.+.+.|.+-.+.+++||..+.. - ++.. ..... .+++.++.+++.|
T Consensus 171 m~~ll~~al~~G--a~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~---av~~~i~lA~~~G 245 (509)
T PRK09061 171 ILELLEQGLDEG--ALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVD---AYQELIAAAAETG 245 (509)
T ss_pred HHHHHHHHHHCC--CCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHH---HHHHHHHHHHHhC
Confidence 445554 234 58888753222234777899999999999998865 1 2311 11111 5788999999999
Q ss_pred CCEEEecCCcc--cCChhHHHHHHHHHHHCCCeEccccc
Q 028948 115 FDTIELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFA 151 (201)
Q Consensus 115 Fd~IEISdGti--~i~~~~r~~lI~~~~~~Gf~v~pE~g 151 (201)
+. +-||-=+. ..+.++-+++|+++++.|..|..|+-
T Consensus 246 ~r-v~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 246 AH-MHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred CC-EEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 75 44542111 12446778999999999999977774
No 128
>PRK08323 phenylhydantoinase; Validated
Probab=81.13 E-value=30 Score=31.90 Aligned_cols=96 Identities=10% Similarity=0.106 Sum_probs=62.6
Q ss_pred ccccEEEeeCc--cccccChhHHHHHHHHHHhCCceecC--cc--HHHHH----HHhCC----------------chHHH
Q 028948 52 QFVDGLKFSGG--SHSLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHL----IRNGP----------------SAFKE 105 (201)
Q Consensus 52 ~yID~lKfg~G--Ts~l~p~~~L~eKI~l~~~~gV~v~~--Gt--lfE~a----l~qg~----------------~~~~e 105 (201)
..++.+|+..+ .....+.+.|++-++.++++|+.+.. -+ ..+.+ ...|. ..+++
T Consensus 140 ~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~ 219 (459)
T PRK08323 140 EGITSFKLFMAYKGALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNR 219 (459)
T ss_pred cCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHH
Confidence 34577887643 33456677899999999999987654 22 22211 11121 13444
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccc
Q 028948 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (201)
Q Consensus 106 yl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~ 152 (201)
-++.++.+|.... | .-++.++-.++|+.+++.|..|..|+.-
T Consensus 220 ~~~~a~~~~~~~~-i----~H~s~~~~~~~i~~ak~~g~~vt~e~~p 261 (459)
T PRK08323 220 AIMLAELAGAPLY-I----VHVSCKEALEAIRRARARGQRVFGETCP 261 (459)
T ss_pred HHHHHHHhCCCEE-E----EeCCCHHHHHHHHHHHHCCCeEEEEcCc
Confidence 5677888886654 3 5566677789999999999887655543
No 129
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=81.10 E-value=5.2 Score=34.43 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhCCceecC--ccH----HHHHHHhCC----chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 028948 70 PFIEEVVKRAHQHDVYVST--GDW----AEHLIRNGP----SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 139 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~--Gtl----fE~al~qg~----~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~ 139 (201)
..+...++.+|++|+++.+ |+| +..++ .++ .-++..++.+++.|||.|.|.--....+.+....+++.+
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~-~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~L 124 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPEFTAAL-NDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhh-cCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHH
Confidence 3477889999999998886 543 22222 221 145788889999999999997655443345556666666
Q ss_pred HHC
Q 028948 140 KSA 142 (201)
Q Consensus 140 ~~~ 142 (201)
++.
T Consensus 125 r~~ 127 (253)
T cd06545 125 YAA 127 (253)
T ss_pred HHH
Confidence 553
No 130
>PRK04302 triosephosphate isomerase; Provisional
Probab=80.43 E-value=4.3 Score=34.53 Aligned_cols=70 Identities=19% Similarity=0.097 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC-CCcccccccccccEEEecccC
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSDRDRAFGAYVARAPRS 177 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~-~dl~ag~~~a~g~~Vi~E~Re 177 (201)
-+.+.+.++++|.+.|-+-+.--.++.++-.++++.+++.|+.+..+++-.... .-...+.+ +|..|+|.
T Consensus 74 g~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~~~~~~~~~~-----~I~~~p~~ 144 (223)
T PRK04302 74 GHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNNPETSAAAAALGPD-----YVAVEPPE 144 (223)
T ss_pred hhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHhcCCCC-----EEEEeCcc
Confidence 345688999999999999887666888888899999999999887655542111 11123444 88888874
No 131
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=80.41 E-value=15 Score=31.06 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=29.4
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV 84 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV 84 (201)
.+....++++..++|+|++|+|+--..-+..+ -++..++.+.
T Consensus 9 ~~~~a~~~~~~~~~~v~~iKig~~l~~~~G~~----~v~~l~~~~~ 50 (213)
T TIGR01740 9 TKDEALDLADSLGPEIEVIKVGIDLLLDGGDK----IIDELAKLNK 50 (213)
T ss_pred CHHHHHHHHHhcCCcCcEEEECHHHHHhcCHH----HHHHHHHcCC
Confidence 56678889999999999999998655544443 3444444443
No 132
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=80.40 E-value=14 Score=34.52 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=79.5
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeC---c-cccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG---G-SHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN- 98 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~---G-Ts~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q- 98 (201)
|..++=|-+..-.+..++++++..-.+.. +.+ . |.-..|..+-.++++.++++|+ .++.| ++-+..+..
T Consensus 94 ~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~---~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l 170 (430)
T PRK08208 94 SFAVGGGTPTLLNAAELEKLFDSVERVLG---VDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHAL 170 (430)
T ss_pred EEEEcCCccccCCHHHHHHHHHHHHHhCC---CCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHh
Confidence 44455554332267889999998876553 222 1 2224466666899999999999 77778 664544422
Q ss_pred --CC--chHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 99 --GP--SAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 99 --g~--~~~~eyl~~~k~lGFd~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
+. +.+.+-++.|++.||+.| -+--|.=.-+.+++.+.++.+.+.|..
T Consensus 171 ~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~ 223 (430)
T PRK08208 171 HRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPE 223 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCC
Confidence 21 246667788899999875 566676677778888889999988765
No 133
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=79.82 E-value=14 Score=30.49 Aligned_cols=68 Identities=22% Similarity=0.238 Sum_probs=42.7
Q ss_pred HHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 028948 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (201)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISd 122 (201)
++.+.+.-+++|-+- ...+...+.+-++.++++|+++.++ ..++....+.++.+.++|.|.|-+..
T Consensus 69 ~~~~~~~Gad~i~vh-------~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 69 AEQAFAAGADIVTVL-------GVADDATIKGAVKAAKKHGKEVQVD-------LINVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred HHHHHHcCCCEEEEe-------ccCCHHHHHHHHHHHHHcCCEEEEE-------ecCCCChHHHHHHHHHcCCCEEEEcC
Confidence 666666555555432 2234445889999999999988652 01122333444556778999998876
Q ss_pred Cc
Q 028948 123 GS 124 (201)
Q Consensus 123 Gt 124 (201)
|+
T Consensus 135 g~ 136 (206)
T TIGR03128 135 GL 136 (206)
T ss_pred Cc
Confidence 65
No 134
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=79.68 E-value=4.3 Score=39.94 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEecCCc---------------ccC-----ChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 104 KEYVEDCKQVGFDTIELNVGS---------------LEI-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGt---------------i~i-----~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
++.++++++||+++||++-=+ ..+ +.++..++|+.++++|++|+-.+=...
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH 230 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGH 230 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccC
Confidence 444588899999999995311 111 256889999999999999966554433
No 135
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=79.55 E-value=12 Score=35.32 Aligned_cols=107 Identities=14% Similarity=0.188 Sum_probs=75.1
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh---C--CchHHHHHHHH
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN---G--PSAFKEYVEDC 110 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q---g--~~~~~eyl~~~ 110 (201)
.+..+.++++..-.+..+.+-..-|.-+-|..+-.++++.++++|+ .++.| ++=+..+.. + .+.+.+-++.+
T Consensus 117 ~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l 196 (455)
T TIGR00538 117 SPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHA 196 (455)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 6788899998887764322111123344555556889999999999 66677 555544422 1 12466678888
Q ss_pred HHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 111 KQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 111 k~lGFd--~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
++.||+ .+-+.-|.-.-+.++..+.++.+.+.+..
T Consensus 197 ~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~ 233 (455)
T TIGR00538 197 REAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPD 233 (455)
T ss_pred HhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCC
Confidence 999998 45666777778899999999999998865
No 136
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=79.39 E-value=5.9 Score=39.92 Aligned_cols=71 Identities=20% Similarity=0.124 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
+++-.++-|+.+|+.||.+. +|+--+.|-. -++++|++.+ +-...+++|+++|+..++.|-.
T Consensus 446 ~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~a-----------IA~elGId~v-----~A~~~PedK~~iV~~lQ~~G~~ 509 (679)
T PRK01122 446 VKPGIKERFAELRKMGIKTVMITGDNPLTAAA-----------IAAEAGVDDF-----LAEATPEDKLALIRQEQAEGRL 509 (679)
T ss_pred CchhHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCcEE-----EccCCHHHHHHHHHHHHHcCCe
Confidence 35568899999999998554 5864444432 2477888643 5678999999999999999965
Q ss_pred E-cccccccc
Q 028948 146 A-KPKFAVMF 154 (201)
Q Consensus 146 v-~pE~g~k~ 154 (201)
| -.-.|+++
T Consensus 510 VaMtGDGvND 519 (679)
T PRK01122 510 VAMTGDGTND 519 (679)
T ss_pred EEEECCCcch
Confidence 5 55566665
No 137
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=79.11 E-value=3.2 Score=38.60 Aligned_cols=58 Identities=31% Similarity=0.488 Sum_probs=33.7
Q ss_pred CceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh-------hHHHHHHHHHHHCCCeEccccc
Q 028948 83 DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE-------ETLLRYVRLVKSAGLKAKPKFA 151 (201)
Q Consensus 83 gV~v~~G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~-------~~r~~lI~~~~~~Gf~v~pE~g 151 (201)
||-|||| ..+| ...+|++.++++||+.|=.| +-+|+ +...++++.|++.||+|...+.
T Consensus 3 GiSvY~~~~~~~--------~~~~yi~~a~~~Gf~~iFTS---L~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 3 GISVYPGQSSFE--------ENKAYIEKAAKYGFKRIFTS---LHIPEDDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp EEEE-CCCS-HH--------HHHHHHHHHHCTTEEEEEEE---E---------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred EEEEeCCCCCHH--------HHHHHHHHHHHCCCCEEECC---CCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5667776 4332 45678888888888877666 33333 3344677888888888744433
No 138
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=79.02 E-value=6.4 Score=39.62 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=52.9
Q ss_pred cChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 028948 67 MPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (201)
-+++-.++.|+.+|+.||.+. +|+=-+.|-. -++++|++.+ +-.+.+++|+++|+..++.|-
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~a-----------IA~elGI~~v-----~A~~~PedK~~iV~~lQ~~G~ 504 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAAT-----------IAKEAGVDRF-----VAECKPEDKINVIREEQAKGH 504 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCceE-----EcCCCHHHHHHHHHHHHhCCC
Confidence 356668899999999999654 5754333332 3478888743 568899999999999999997
Q ss_pred eE-cccccccc
Q 028948 145 KA-KPKFAVMF 154 (201)
Q Consensus 145 ~v-~pE~g~k~ 154 (201)
.| -.-.|+++
T Consensus 505 ~VaMtGDGvND 515 (673)
T PRK14010 505 IVAMTGDGTND 515 (673)
T ss_pred EEEEECCChhh
Confidence 66 55556655
No 139
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=78.74 E-value=3.4 Score=40.25 Aligned_cols=87 Identities=10% Similarity=0.007 Sum_probs=68.0
Q ss_pred ccEEEeeCccccccChh-----------HHHHHHHHHHhCCce-ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 028948 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (201)
Q Consensus 54 ID~lKfg~GTs~l~p~~-----------~L~eKI~l~~~~gV~-v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEIS 121 (201)
+|.+-+-..+|-++-+. .+.+-|++++++|.. +..|. |.+..-+++.+.++++.+.+.|-+.|-|.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--EDa~Rtd~efl~~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC--EDGGRSDKEFLCKILGEAIKAGATSVGIA 259 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc--ccccccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 35677777777666332 247888999999974 55553 44545555678899999999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHC
Q 028948 122 VGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~ 142 (201)
|-.--+.+.+-.++|+.+++.
T Consensus 260 DTvG~~tP~~v~~lV~~l~~~ 280 (503)
T PLN03228 260 DTVGINMPHEFGELVTYVKAN 280 (503)
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999875
No 140
>PRK12313 glycogen branching enzyme; Provisional
Probab=78.64 E-value=5.2 Score=39.40 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCCEEEecCC----------c-----ccC-----ChhHHHHHHHHHHHCCCeEccccccc
Q 028948 103 FKEYVEDCKQVGFDTIELNVG----------S-----LEI-----PEETLLRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdG----------t-----i~i-----~~~~r~~lI~~~~~~Gf~v~pE~g~k 153 (201)
.++.++++|+||+++||++-= . ..+ +.++..++|+.++++|++|.-.+=..
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~n 243 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPG 243 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 455678999999999998531 1 111 25688999999999999996654433
No 141
>PRK15452 putative protease; Provisional
Probab=78.48 E-value=10 Score=36.32 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=58.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccc------ccChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHH
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDC 110 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~------l~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~eyl~~~ 110 (201)
.+..++..++.- .|-|=+|...+. .+..+.|++-++++|++|+++|.- ++..-- ... .+.+|++.+
T Consensus 12 ~~e~l~aAi~~G---ADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~-el~--~~~~~l~~l 85 (443)
T PRK15452 12 TLKNMRYAFAYG---ADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNA-KLK--TFIRDLEPV 85 (443)
T ss_pred CHHHHHHHHHCC---CCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHH-HHH--HHHHHHHHH
Confidence 555666666543 455555543322 344567999999999999988864 333211 112 688889999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 028948 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 111 k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~ 142 (201)
.++|+|+|=|+| .-+++.+++.
T Consensus 86 ~~~gvDgvIV~d----------~G~l~~~ke~ 107 (443)
T PRK15452 86 IAMKPDALIMSD----------PGLIMMVREH 107 (443)
T ss_pred HhCCCCEEEEcC----------HHHHHHHHHh
Confidence 999999999998 3455555554
No 142
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=78.41 E-value=33 Score=29.52 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=62.4
Q ss_pred HHHHHHHhhccc-ccEEEeeCcccc------ccChhHHHHHHHHHHhCCceecC---cc-----HH---HHHHHhCCchH
Q 028948 42 VLEDIFESMGQF-VDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVST---GD-----WA---EHLIRNGPSAF 103 (201)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~------l~p~~~L~eKI~l~~~~gV~v~~---Gt-----lf---E~al~qg~~~~ 103 (201)
.+++.|+.+.++ .|.+=++.+... -.+...+++--+++.++||.++. +. |. +....+.-+.+
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~ 96 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIM 96 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHH
Confidence 444555444332 344444444321 12345577888889999998763 21 11 11111111257
Q ss_pred HHHHHHHHHcCCCEEEecCCccc---CCh-------hHHHHHHHHHHHCCCeEccc
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLE---IPE-------ETLLRYVRLVKSAGLKAKPK 149 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~---i~~-------~~r~~lI~~~~~~Gf~v~pE 149 (201)
++.++.|+.+|.+.|=+..+... -+. +...++.+.|++.|.++--|
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 88899999999999977644221 112 23346667888889988666
No 143
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=78.41 E-value=13 Score=31.87 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=63.9
Q ss_pred HHHHHHHhhc-ccccEEEeeCcccc------ccChhHHHHHHHHHHhCCceecCc--cH---H------HHHHHhCCchH
Q 028948 42 VLEDIFESMG-QFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DW---A------EHLIRNGPSAF 103 (201)
Q Consensus 42 ~l~DlLe~ag-~yID~lKfg~GTs~------l~p~~~L~eKI~l~~~~gV~v~~G--tl---f------E~al~qg~~~~ 103 (201)
..=+.+..+| ++|++. ..... =++...+++.-++++++|+.++.. +. + +....+.-+.+
T Consensus 25 e~~~~~~~~G~~~iEl~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 101 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMS---VDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIM 101 (283)
T ss_pred HHHHHHHHcCCCeEEEe---cCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHH
Confidence 4444555566 566652 22211 124456888899999999987542 11 1 11111111268
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--CC--------hhHHHHHHHHHHHCCCeEcccc
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLE--IP--------EETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~--i~--------~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
++.++.|++||.+.|=+..+... .+ .+...++.+.+++.|.++..|-
T Consensus 102 ~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 89999999999999987644321 11 1233567888889999886664
No 144
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=78.41 E-value=5.3 Score=37.28 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHH----HHHHHHHHHCCCeE
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETL----LRYVRLVKSAGLKA 146 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGt---i~i~~~~r----~~lI~~~~~~Gf~v 146 (201)
...+.++.++++||+.||+.+.- .+.+.+++ .++-+.+++.|++|
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v 84 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKV 84 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeE
Confidence 67889999999999999998754 23443332 46677788999996
No 145
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=78.37 E-value=11 Score=35.14 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCceecC----c-c----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHH
Q 028948 72 IEEVVKRAHQHDVYVST----G-D----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRL 138 (201)
Q Consensus 72 L~eKI~l~~~~gV~v~~----G-t----lfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r----~~lI~~ 138 (201)
..-...+++++.|+|.. | + |||.++.- +.+++..|.+.||+.|=|. || .+|.++= .+++++
T Consensus 76 ~~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a----~~~~~~~a~~~GftSVMiD-gS-~lp~eENI~~TkevVe~ 149 (345)
T cd00946 76 AHHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA----DEEYFKQHGEPLFSSHMLD-LS-EEPLEENIEICKKYLER 149 (345)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH----HHHHHHHhccCCCceEEee-CC-CCCHHHHHHHHHHHHHH
Confidence 33445688899998875 5 4 68888765 4689999999999999665 54 3555543 366788
Q ss_pred HHHCCCeEccccccccCC
Q 028948 139 VKSAGLKAKPKFAVMFNK 156 (201)
Q Consensus 139 ~~~~Gf~v~pE~g~k~~~ 156 (201)
|+..|.-|-.|+|.=-+.
T Consensus 150 Ah~~gvsVEaElG~igg~ 167 (345)
T cd00946 150 MAKINMWLEMEIGITGGE 167 (345)
T ss_pred HHHcCCEEEEEecccCCc
Confidence 889999999999975333
No 146
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=78.33 E-value=8.2 Score=32.07 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=51.7
Q ss_pred HHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 75 VVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 75 KI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
..++++++|| .++ .|--.++|+..- ...+.++||+.+=++|++-+.+.+.....++..+..|.++
T Consensus 129 L~~~L~~~~i~~lii~G~~t~~CV~~T-------~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i 195 (196)
T cd01011 129 LAEYLRERGIDRVDVVGLATDYCVKAT-------ALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVL 195 (196)
T ss_pred HHHHHHHCCCCEEEEEEecccHHHHHH-------HHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEE
Confidence 3556678999 444 477888888774 3345567999999999999999999999999999988765
No 147
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=78.30 E-value=16 Score=31.12 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=58.7
Q ss_pred HHhhcccccEEEeeCccccccC--------hhHHHHHHHHHHhCCceecC--ccHHHH-HH--HhCCc----hHHHHHHH
Q 028948 47 FESMGQFVDGLKFSGGSHSLMP--------KPFIEEVVKRAHQHDVYVST--GDWAEH-LI--RNGPS----AFKEYVED 109 (201)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p--------~~~L~eKI~l~~~~gV~v~~--GtlfE~-al--~qg~~----~~~eyl~~ 109 (201)
|....+.+|+|=+ |+...=.. .+..++.|..+|+.|++|.. |+|..- .+ ...+. -++.-++.
T Consensus 21 l~~~pds~D~v~l-f~~~~~~~~~~~~~~~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~ 99 (255)
T cd06542 21 LLNLPDSVDMVSL-FAANINLDAATAVQFLLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDT 99 (255)
T ss_pred cccCCCcceEEEE-cccccCcccccchhhhhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHH
Confidence 3445688898877 55432222 36688999999999998864 543211 10 11111 25566677
Q ss_pred HHHcCCCEEEecCCccc--------CChhHHHHHHHHHHHC
Q 028948 110 CKQVGFDTIELNVGSLE--------IPEETLLRYVRLVKSA 142 (201)
Q Consensus 110 ~k~lGFd~IEISdGti~--------i~~~~r~~lI~~~~~~ 142 (201)
|++.|||.|-|.--... -..+....+|+..++.
T Consensus 100 v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~ 140 (255)
T cd06542 100 VDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKY 140 (255)
T ss_pred HHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHH
Confidence 88999999988543221 1345566777777754
No 148
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=78.14 E-value=34 Score=31.46 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=60.6
Q ss_pred ccEEEeeCccc--cccChhHHHHHHHHHHhCCceecC--cc--HHHHHHH----hCCc----------------hHHHHH
Q 028948 54 VDGLKFSGGSH--SLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHLIR----NGPS----------------AFKEYV 107 (201)
Q Consensus 54 ID~lKfg~GTs--~l~p~~~L~eKI~l~~~~gV~v~~--Gt--lfE~al~----qg~~----------------~~~eyl 107 (201)
++.+|+..+.+ ...+.+.+++-++.++++|+.+.. -+ +.+.... +|.. .+...+
T Consensus 144 ~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~ 223 (447)
T cd01314 144 ISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAI 223 (447)
T ss_pred CCEEEEEeccCCCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHH
Confidence 46788764332 334778899999999999987753 22 3332221 1311 112235
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccc
Q 028948 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (201)
Q Consensus 108 ~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~ 152 (201)
+.++.+|...+ ..-++..+-.++|+.+++.|..+..|...
T Consensus 224 ~la~~~~~~~~-----~~H~s~~~~~~~i~~~k~~g~~v~~~~~p 263 (447)
T cd01314 224 RLAELAGAPLY-----IVHVSSKEAADEIARARKKGLPVYGETCP 263 (447)
T ss_pred HHHHHhCCCEE-----EEeCCCHHHHHHHHHHHHCCCeEEEecCc
Confidence 66778888776 56667777778999999999887555543
No 149
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=78.09 E-value=6.1 Score=33.90 Aligned_cols=95 Identities=8% Similarity=-0.047 Sum_probs=57.5
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHH-HHHHcCCCE
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE-DCKQVGFDT 117 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~-~~k~lGFd~ 117 (201)
......++++...+++|++|+|+--..-+..+.+++.-+++. |.++..- .-+ .+ +..|+. .+.+.|.|.
T Consensus 14 ~~~~a~~l~~~l~~~v~~~kvG~~l~~~~G~~~i~~lk~~~~--~~~v~~D----LK~-~D---i~~~v~~~~~~~Gad~ 83 (216)
T PRK13306 14 DLESAIEDAKKVAEEVDIIEVGTILLLAEGMKAVRVLRALYP--DKIIVAD----TKI-AD---AGKILAKMAFEAGADW 83 (216)
T ss_pred CHHHHHHHHHHccccCCEEEEChHHHHHhCHHHHHHHHHHCC--CCEEEEE----Eee-cC---CcHHHHHHHHHCCCCE
Confidence 566778899999999999999987766665555555444321 3222211 111 11 112222 366778888
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 118 IELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+-|.--+ +.+.-.+.++.+++.|.++
T Consensus 84 vTvH~~a---~~~~i~~~~~~~~~~g~~~ 109 (216)
T PRK13306 84 VTVICAA---HIPTIKAALKVAKEFNGEI 109 (216)
T ss_pred EEEeCCC---CHHHHHHHHHHHHHcCCEE
Confidence 8887522 5565667777777766544
No 150
>PRK02227 hypothetical protein; Provisional
Probab=78.05 E-value=10 Score=33.73 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=69.9
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccC--hhHHHHHHHHHHhC--CceecCccHHHHHHHhCCchHHHHHHHHHHcCCC
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p--~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd 116 (201)
......+..+..=+||+|.|.--..-.+ -+.++..+...+.+ +..+.+-.|.++--...+ .-.+-.+.+++.||+
T Consensus 68 ~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~-~~~~l~~~a~~aGf~ 146 (238)
T PRK02227 68 TISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSV-SPLSLPAIAADAGFD 146 (238)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCC-ChHHHHHHHHHcCCC
Confidence 4667788888888999999953111111 12233334444444 445555567664323221 234678889999999
Q ss_pred EEEecCC-------cccCChhHHHHHHHHHHHCCCeE
Q 028948 117 TIELNVG-------SLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 117 ~IEISdG-------ti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
.+=|... |--++.++..+++++++++|+..
T Consensus 147 g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 147 GAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred EEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 9988643 23699999999999999999987
No 151
>PRK05927 hypothetical protein; Provisional
Probab=77.91 E-value=30 Score=31.97 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=66.0
Q ss_pred EEeeCccccccChhHHHHHHHHHHhC--CceecCccHHHHHH---HhCCchHHHHHHHHHHcCCC-----EEEecCCcc-
Q 028948 57 LKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQVGFD-----TIELNVGSL- 125 (201)
Q Consensus 57 lKfg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al---~qg~~~~~eyl~~~k~lGFd-----~IEISdGti- 125 (201)
+=|..|-..=.+-+.+.+.++..++. ++.+..=+-.|+++ .-| -..++.++..|+.|.+ ..|+++-.+
T Consensus 96 i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G-~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~ 174 (350)
T PRK05927 96 VLLQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSG-ISTEQALERLWDAGQRTIPGGGAEILSERVR 174 (350)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcC-CCHHHHHHHHHHcCcccCCCCCchhCCHHHh
Confidence 33556666556667788888888864 45444224555442 223 4689999999999998 899998543
Q ss_pred ------cCChhHHHHHHHHHHHCCCeEcc
Q 028948 126 ------EIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
+++.++|++.|+.|++.|+++.+
T Consensus 175 ~~~~p~k~~~~~rl~~i~~A~~lGi~~~s 203 (350)
T PRK05927 175 KIISPKKMGPDGWIQFHKLAHRLGFRSTA 203 (350)
T ss_pred hccCCCCCCHHHHHHHHHHHHHcCCCcCc
Confidence 56779999999999999999944
No 152
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=77.78 E-value=11 Score=31.92 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=63.2
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~eyl~~~k~lGFd~ 117 (201)
......++++..++|+|++|+|+-- +.. ...+-++.+++.+.++..- =+..+ |+-+..|.+.+.+.|+|+
T Consensus 9 ~~~~a~~i~~~~~~~v~~iKvg~~l--~~~--~g~~~i~~l~~~~~~i~~DlK~~DI-----g~tv~~~~~~~~~~gad~ 79 (216)
T cd04725 9 DEEFALALIDALGPYVCAVKVGLEL--FEA--AGPEIVKELRELGFLVFLDLKLGDI-----PNTVAAAAEALLGLGADA 79 (216)
T ss_pred CHHHHHHHHHhcCCcccEEEECHHH--HHh--cCHHHHHHHHHCCCcEEEEeecCch-----HHHHHHHHHHHHhcCCCE
Confidence 5568889999999999999999754 322 2567777888877655543 13222 123445555666779999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCCC
Q 028948 118 IELNVGSLEIPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (201)
+-|+- ....+....+++.+++.+-
T Consensus 80 ~Tvh~---~~G~~~l~~~~~~~~~~~~ 103 (216)
T cd04725 80 VTVHP---YGGSDMLKAALEAAEEKGK 103 (216)
T ss_pred EEECC---cCCHHHHHHHHHHHhccCC
Confidence 98884 4456677777777765443
No 153
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=77.52 E-value=15 Score=30.53 Aligned_cols=97 Identities=15% Similarity=0.276 Sum_probs=63.6
Q ss_pred hhHHHHHHHhhcc-cccEEEee------------CccccccChhHHHHHHHHHHhC-CceecC---ccHHHHHHHhCCch
Q 028948 40 HNVLEDIFESMGQ-FVDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSA 102 (201)
Q Consensus 40 ~~~l~DlLe~ag~-yID~lKfg------------~GTs~l~p~~~L~eKI~l~~~~-gV~v~~---GtlfE~al~qg~~~ 102 (201)
+..+.+.-+.+-+ ..|.+++- +|++.+-..+.+.+.++-.++. ++.+.- .+|-+. ..
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~------~~ 139 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE------EE 139 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc------hH
Confidence 4455554444444 68999885 5666777778899999988764 223332 234321 26
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHHC
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKSA 142 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti~i--~~~~r~~lI~~~~~~ 142 (201)
..++++.+.+.|++.|.|+.++... ...-..++++++++.
T Consensus 140 ~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~ 181 (231)
T cd02801 140 TLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEA 181 (231)
T ss_pred HHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC
Confidence 7888899999999999999987532 212234667777663
No 154
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=77.50 E-value=15 Score=33.70 Aligned_cols=113 Identities=13% Similarity=0.232 Sum_probs=78.5
Q ss_pred eEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C----
Q 028948 28 EMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G---- 99 (201)
Q Consensus 28 mV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g---- 99 (201)
.-++-|-|..-.+..++.+++..... +..-+.+ -.-|..+-.++++.+++.|| .++.| ++-+..+.. |
T Consensus 62 iy~GGGTPs~l~~~~l~~ll~~i~~~-~~~eit~---E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~ 137 (370)
T PRK06294 62 VFFGGGTPSLVPPALIQDILKTLEAP-HATEITL---EANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHS 137 (370)
T ss_pred EEECCCccccCCHHHHHHHHHHHHhC-CCCeEEE---EeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCC
Confidence 33454543333677889998887554 3344544 34566666899999999999 88888 677766653 2
Q ss_pred CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCC
Q 028948 100 PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 100 ~~~~~eyl~~~k~lGFd~I--EISdGti~i~~~~r~~lI~~~~~~Gf 144 (201)
.+.+.+-++.+++.||+.| -+--|.=.=+.+++.+-++.+.+.+.
T Consensus 138 ~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~ 184 (370)
T PRK06294 138 SSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPI 184 (370)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHccCC
Confidence 1346667778999999854 45566666677888888888888774
No 155
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=77.33 E-value=6.4 Score=35.81 Aligned_cols=68 Identities=24% Similarity=0.350 Sum_probs=39.4
Q ss_pred cccccEEEeeCccccccChhHHHHHHHHHHhCCceec-----C-c---cHHHHHHHhCCc----hHHHHHHHHHHcCCCE
Q 028948 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----T-G---DWAEHLIRNGPS----AFKEYVEDCKQVGFDT 117 (201)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~-----~-G---tlfE~al~qg~~----~~~eyl~~~k~lGFd~ 117 (201)
=+|||..=. |.-..+..+ =-.-|+.||+|||+|. . + .|++.++.+..+ -.++.++.|+-+|||.
T Consensus 26 W~yiD~fvy-wsh~~i~iP--~~~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDG 102 (311)
T PF03644_consen 26 WQYIDIFVY-WSHGLITIP--PAGWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDG 102 (311)
T ss_dssp GGG-SEEEE-T-TBSSE-----HHHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--E
T ss_pred ccceeeEee-cccccccCC--CchhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCc
Confidence 368887543 544444422 2467899999999986 2 2 389999984322 3689999999999997
Q ss_pred EEec
Q 028948 118 IELN 121 (201)
Q Consensus 118 IEIS 121 (201)
.=|+
T Consensus 103 w~iN 106 (311)
T PF03644_consen 103 WLIN 106 (311)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5443
No 156
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=77.25 E-value=3 Score=35.37 Aligned_cols=61 Identities=21% Similarity=0.362 Sum_probs=49.4
Q ss_pred CCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 82 HDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 82 ~gV~v~~G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
..+.|--| |.|+..+.+= .-++++++..+.||+.+=|-=|--..--++..+.++ +..||++
T Consensus 4 ~~vFVTVGtT~Fd~LI~~V--l~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~--k~~gl~i 65 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCV--LSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIR--KNGGLTI 65 (170)
T ss_pred eEEEEEeccccHHHHHHHH--cCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhc--ccCCeEE
Confidence 34566669 7999999997 889999999999999987776666555666677887 7888887
No 157
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=76.95 E-value=15 Score=31.94 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=50.3
Q ss_pred hHHHHHHHhhccc-ccEEEeeCcccc-------ccChhHHHHHHHHHHhC-CceecC--ccHHHHHHHhCCchHHHHHHH
Q 028948 41 NVLEDIFESMGQF-VDGLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVED 109 (201)
Q Consensus 41 ~~l~DlLe~ag~y-ID~lKfg~GTs~-------l~p~~~L~eKI~l~~~~-gV~v~~--GtlfE~al~qg~~~~~eyl~~ 109 (201)
..+.+..+.+-++ +|++=+-+++-. +...+.+++.++-.++. ++++.- ++.. ..+.+.+..+.
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------~~~~~~~~a~~ 184 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF------DLEDIVELAKA 184 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC------CHHHHHHHHHH
Confidence 4445555555555 777777666432 33456677888877776 444432 1211 11256778888
Q ss_pred HHHcCCCEEEecCCcc
Q 028948 110 CKQVGFDTIELNVGSL 125 (201)
Q Consensus 110 ~k~lGFd~IEISdGti 125 (201)
+.+.|.|.|.+++++.
T Consensus 185 l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 185 AERAGADGLTAINTIS 200 (289)
T ss_pred HHHcCCCEEEEEcccC
Confidence 9999999999998764
No 158
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=76.58 E-value=25 Score=30.44 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=64.0
Q ss_pred hhHHHHHHHhhcccccEE------------EeeCccccccChhHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHH
Q 028948 40 HNVLEDIFESMGQFVDGL------------KFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFK 104 (201)
Q Consensus 40 ~~~l~DlLe~ag~yID~l------------Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~ 104 (201)
+..+....+...++.|++ |-|.|+..+.+.+.+.+.++-.++.+++|+. . +|- . ...
T Consensus 84 ~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~------~--~~~ 155 (233)
T cd02911 84 LEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD------V--DDE 155 (233)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC------c--CHH
Confidence 455555555555555555 4467888889899999999999998887774 2 332 1 456
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH
Q 028948 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK 140 (201)
Q Consensus 105 eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~ 140 (201)
++.+.+.+.|.|.|-++.+.-. +..++ ++|++++
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g-~~ad~-~~I~~i~ 189 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPG-NHADL-KKIRDIS 189 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCC-CCCcH-HHHHHhc
Confidence 7778889999999999876543 22333 7788776
No 159
>PRK15447 putative protease; Provisional
Probab=76.40 E-value=14 Score=33.19 Aligned_cols=90 Identities=21% Similarity=0.134 Sum_probs=54.3
Q ss_pred HHHHHHHhhcc-cccEEEeeCccccc---cChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCC
Q 028948 42 VLEDIFESMGQ-FVDGLKFSGGSHSL---MPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (201)
Q Consensus 42 ~l~DlLe~ag~-yID~lKfg~GTs~l---~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~eyl~~~k~lGF 115 (201)
.++|+.....+ -+|-|=+|...... +..+.+++-++.+|++|.++|.- ..+.. .. .++.+.+.+ +.|.
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~---~~--e~~~l~~~l-~~~~ 89 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEA---PS--ELKELRRLV-ENGE 89 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccC---HH--HHHHHHHHH-hcCC
Confidence 55666665533 58888888654332 56677999999999999988763 22110 11 233333322 2377
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHCCCeEc
Q 028948 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 116 d~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
+.|.++| ...+..+++.|+.+.
T Consensus 90 ~~v~v~d----------~g~l~~~~e~~~~l~ 111 (301)
T PRK15447 90 FLVEAND----------LGAVRLLAERGLPFV 111 (301)
T ss_pred CEEEEeC----------HHHHHHHHhcCCCEE
Confidence 7888876 344555555566553
No 160
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=76.40 E-value=53 Score=30.20 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=70.7
Q ss_pred CCCceeEecCCCC---CCcchhHHHHHHHhhc--ccccEEEee------------------------Ccc-----ccccC
Q 028948 23 RFGVTEMRSPHYT---LSSSHNVLEDIFESMG--QFVDGLKFS------------------------GGS-----HSLMP 68 (201)
Q Consensus 23 ~~GlTmV~DkG~s---~~~g~~~l~DlLe~ag--~yID~lKfg------------------------~GT-----s~l~p 68 (201)
..|+|.|+|-+.. .......+++.++.+. .++|+--.+ .+. ....+
T Consensus 81 ~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ei~~l~~~G~~giKv~~~~~~~~~~~~~~ 160 (447)
T cd01315 81 AGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPGNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVD 160 (447)
T ss_pred hCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCCCHHHHHHHHHcCCcEEEEEecccCCCCcccCC
Confidence 3599999987532 2225567777777653 356653322 111 01235
Q ss_pred hhHHHHHHHHHHhCCceecC--c--cHHHHHHH--------------h------CCchHHHHHHHHHHcCCCEEEecCCc
Q 028948 69 KPFIEEVVKRAHQHDVYVST--G--DWAEHLIR--------------N------GPSAFKEYVEDCKQVGFDTIELNVGS 124 (201)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~--G--tlfE~al~--------------q------g~~~~~eyl~~~k~lGFd~IEISdGt 124 (201)
.+.+++-++.++++|..++. . .++..... + -...+.++++.+++.|... =|+-
T Consensus 161 ~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~i-hi~h-- 237 (447)
T cd01315 161 DEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRL-HIVH-- 237 (447)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCE-EEEe--
Confidence 56688888888888876654 3 13221110 0 0125778888888888443 2222
Q ss_pred ccCChhHHHHHHHHHHHCCCeEccccc
Q 028948 125 LEIPEETLLRYVRLVKSAGLKAKPKFA 151 (201)
Q Consensus 125 i~i~~~~r~~lI~~~~~~Gf~v~pE~g 151 (201)
++...=.++|+.++..|+.+..|.-
T Consensus 238 --~s~~~~~~~i~~~~~~g~~i~~e~~ 262 (447)
T cd01315 238 --LSSAEAVPLIREARAEGVDVTVETC 262 (447)
T ss_pred --CCCHHHHHHHHHHHHCCCceEEEec
Confidence 2234556888888888887765544
No 161
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=76.35 E-value=28 Score=29.64 Aligned_cols=83 Identities=12% Similarity=0.262 Sum_probs=54.0
Q ss_pred HHHHHHhhccc-ccEEEeeCccccc-----cChhHHHHHHHHHHhCCceecC-ccHH-------HHHHHhCCchHHHHHH
Q 028948 43 LEDIFESMGQF-VDGLKFSGGSHSL-----MPKPFIEEVVKRAHQHDVYVST-GDWA-------EHLIRNGPSAFKEYVE 108 (201)
Q Consensus 43 l~DlLe~ag~y-ID~lKfg~GTs~l-----~p~~~L~eKI~l~~~~gV~v~~-Gtlf-------E~al~qg~~~~~eyl~ 108 (201)
+++.++.+.++ +|.+-|-.+.... ++.+.+++.-++++++||.++. +.+. +....+.-+.+.+.++
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~ 91 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIK 91 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHH
Confidence 34556666666 7777666555533 3445688888889999997765 4321 1111111125778889
Q ss_pred HHHHcCCCEEEecCCcc
Q 028948 109 DCKQVGFDTIELNVGSL 125 (201)
Q Consensus 109 ~~k~lGFd~IEISdGti 125 (201)
.|+++|.+.|=+-.|+.
T Consensus 92 ~A~~lGa~~vv~h~g~~ 108 (273)
T smart00518 92 RCEELGIKALVFHPGSY 108 (273)
T ss_pred HHHHcCCCEEEEccccc
Confidence 99999999988877765
No 162
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=75.83 E-value=6.5 Score=35.36 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHH
Q 028948 71 FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVK 140 (201)
Q Consensus 71 ~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti---------~i~~~~r~~lI~~~~ 140 (201)
.+.+-|+.++++|+.+..- |++. ..+.+.+.+++++++++|++.|-||-++- -++.++..++++.+.
T Consensus 150 ~~l~~I~~l~~~G~~v~v~~tv~~---~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~~~~~~~ 226 (318)
T TIGR03470 150 RAVEAIREAKARGFRVTTNTTLFN---DTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFREVL 226 (318)
T ss_pred HHHHHHHHHHHCCCcEEEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCcccccccccccccCHHHHHHHHHHHH
Confidence 3667788888888876654 3332 13445788888888888888888876532 244555455555544
Q ss_pred H
Q 028948 141 S 141 (201)
Q Consensus 141 ~ 141 (201)
+
T Consensus 227 ~ 227 (318)
T TIGR03470 227 S 227 (318)
T ss_pred h
Confidence 3
No 163
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=75.77 E-value=9.4 Score=35.65 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh----hHHHHHHHHHHHCCCe
Q 028948 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE----ETLLRYVRLVKSAGLK 145 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~----~~r~~lI~~~~~~Gf~ 145 (201)
+.+.+.|+-.++++|.+..+. ++....++.+.+.+.|.|.|.|+-.+.+-.+ .++..+++..++.+..
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~--------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSL--------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC
Confidence 344455555555566554332 3346889999999999999999766554221 2566777777777766
Q ss_pred Ecc-cc-ccccCCCCcccccccccccEEEecccCcCe
Q 028948 146 AKP-KF-AVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (201)
Q Consensus 146 v~p-E~-g~k~~~~dl~ag~~~a~g~~Vi~E~Res~~ 180 (201)
|.. .+ ..+....-+++|+| .|.+ +|..|.
T Consensus 190 VIaG~V~t~e~A~~l~~aGAD-----~V~V-G~G~Gs 220 (368)
T PRK08649 190 VIVGGCVTYTTALHLMRTGAA-----GVLV-GIGPGA 220 (368)
T ss_pred EEEeCCCCHHHHHHHHHcCCC-----EEEE-CCCCCc
Confidence 644 10 00111123457777 6655 888774
No 164
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=75.74 E-value=17 Score=35.00 Aligned_cols=119 Identities=17% Similarity=0.153 Sum_probs=76.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccc-cEEEeeCcccc-ccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFV-DGLKFSGGSHS-LMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G- 99 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yI-D~lKfg~GTs~-l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g- 99 (201)
|..++=|=+..-.+..++++++..-..+ +.-...-=|.- .-|..+-.++++.++++|| .++-| ++=+..+.. |
T Consensus 221 tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR 300 (488)
T PRK08207 221 TIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGR 300 (488)
T ss_pred EEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCC
Confidence 4555555333226788999999886654 32111011111 2455667899999999999 66667 555444432 2
Q ss_pred ---CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 100 ---PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 100 ---~~~~~eyl~~~k~lGFd~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
.+.+.+-++.+++.||+.| -+--|.-.-+.+++.+-++.+.+.+..
T Consensus 301 ~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd 351 (488)
T PRK08207 301 HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPE 351 (488)
T ss_pred CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcC
Confidence 2346667788899999754 555666667788888888888887764
No 165
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=75.16 E-value=31 Score=30.31 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHhhcccccEEEeeCcc--------ccccChhHHHHHHHHHHhC-CceecC--ccHHHHHHHhCCchHHHHHHHH
Q 028948 42 VLEDIFESMGQFVDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDC 110 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GT--------s~l~p~~~L~eKI~l~~~~-gV~v~~--GtlfE~al~qg~~~~~eyl~~~ 110 (201)
...+.++.++.+.|++=+-.|+ +.....+.+.+.++-.++. ++++.. .. +.+...++.+.+
T Consensus 107 ~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~--------~~~~~~~~a~~l 178 (300)
T TIGR01037 107 EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP--------NVTDITEIAKAA 178 (300)
T ss_pred HHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC--------ChhhHHHHHHHH
Confidence 3344455555678888876664 4556777889999988875 665553 21 112466788889
Q ss_pred HHcCCCEEEecCCcc
Q 028948 111 KQVGFDTIELNVGSL 125 (201)
Q Consensus 111 k~lGFd~IEISdGti 125 (201)
.+.|.|.|.|++++.
T Consensus 179 ~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 179 EEAGADGLTLINTLR 193 (300)
T ss_pred HHcCCCEEEEEccCC
Confidence 999999999997653
No 166
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=75.12 E-value=7.3 Score=36.90 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cC-----------------ChhHHHHHHHHHHHCCCeEcccccc
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSL-------------EI-----------------PEETLLRYVRLVKSAGLKAKPKFAV 152 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti-------------~i-----------------~~~~r~~lI~~~~~~Gf~v~pE~g~ 152 (201)
+.+=++++++|||++|.||==+- +. +.++..+||+.++++|++|.-.+=.
T Consensus 24 I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 24 LAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVL 103 (479)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 44457788889999998864221 21 3678999999999999999554444
Q ss_pred cc
Q 028948 153 MF 154 (201)
Q Consensus 153 k~ 154 (201)
.+
T Consensus 104 NH 105 (479)
T PRK09441 104 NH 105 (479)
T ss_pred cc
Confidence 43
No 167
>PRK07360 FO synthase subunit 2; Reviewed
Probab=74.92 E-value=38 Score=31.16 Aligned_cols=109 Identities=15% Similarity=0.214 Sum_probs=69.5
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccccccC-hhHHHHHHHHHHhC--CceecCccHHHHHHH---hCCchHHHHHHHHH
Q 028948 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMP-KPFIEEVVKRAHQH--DVYVSTGDWAEHLIR---NGPSAFKEYVEDCK 111 (201)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p-~~~L~eKI~l~~~~--gV~v~~GtlfE~al~---qg~~~~~eyl~~~k 111 (201)
.+.++.+..+.+-+ -+.-+=+-.|...-.+ -+.+.+.++..++. +|.++.=+..|+.+. .| ...++.++.+|
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G-~~~~e~l~~Lk 170 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDG-LSYEEVLKALK 170 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcC-CCHHHHHHHHH
Confidence 33344444333333 3666666667555444 45677888888874 344443255565442 23 35688999999
Q ss_pred HcCCCEE-EecCC----------cc-cCChhHHHHHHHHHHHCCCeEcc
Q 028948 112 QVGFDTI-ELNVG----------SL-EIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 112 ~lGFd~I-EISdG----------ti-~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
+.|.+.+ |-|.- +- ..+.++|++.++.+++.|+++..
T Consensus 171 eAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s 219 (371)
T PRK07360 171 DAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS 219 (371)
T ss_pred HcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 9999998 33321 11 35778999999999999999844
No 168
>PRK10785 maltodextrin glucosidase; Provisional
Probab=74.79 E-value=8.8 Score=37.69 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cC-----ChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSL-------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti-------------~i-----~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
+.+=|+++++||+++|.++==+- .| +.++..+||+.|+++|++|.-.+=...
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH 250 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNH 250 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 55567899999999999975332 22 237899999999999999955444443
No 169
>PRK00915 2-isopropylmalate synthase; Validated
Probab=74.75 E-value=5.9 Score=38.30 Aligned_cols=87 Identities=16% Similarity=0.068 Sum_probs=67.4
Q ss_pred ccEEEeeCccccccChh-----------HHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 028948 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (201)
Q Consensus 54 ID~lKfg~GTs~l~p~~-----------~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISd 122 (201)
++.+-+-..+|-++-+. .+++-+++++++|..|..+ +|.+...+++.+-++++.+.+.|.+.|-+.|
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~--~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFS--AEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 45666666666554322 2478899999999988765 2233344556788889999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHC
Q 028948 123 GSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~ 142 (201)
-.--+.+++-.++|+.+++.
T Consensus 171 TvG~~~P~~~~~~i~~l~~~ 190 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRER 190 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 170
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=74.60 E-value=7.4 Score=39.85 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--------------------CChhHHHHHHHHHHHCCCeEccccccccC
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLE--------------------IPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~--------------------i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~ 155 (201)
++-|.++|+|||++|+++-=+-. =++++..++|+.+.++|++|.-.+=....
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~ 325 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHA 325 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 44688999999999999742110 12478889999999999999665544433
No 171
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=74.38 E-value=9.2 Score=32.61 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHCCCeE
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti------~i~~~~r~~lI~~~~~~Gf~v 146 (201)
.+.+.++++.++||+.||+.-+.. .++.++..++.+.+++.|+++
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 355666677777777777764443 355666666677777777765
No 172
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.28 E-value=4.3 Score=34.97 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=33.6
Q ss_pred ChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 028948 68 PKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISd 122 (201)
++..-.+.++.++++||.+.|| |--|+.-.. ++|++.|-+==
T Consensus 82 SP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~-------------~~Ga~~vK~FP 125 (201)
T PRK06015 82 SPGTTQELLAAANDSDVPLLPGAATPSEVMALR-------------EEGYTVLKFFP 125 (201)
T ss_pred CCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHH-------------HCCCCEEEECC
Confidence 3346678889999999999999 888887554 58999988754
No 173
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=74.26 E-value=6.9 Score=38.39 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------------------cc-----------CC-------hhHHHHHHHHHHHCCCe
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGS------------------LE-----------IP-------EETLLRYVRLVKSAGLK 145 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGt------------------i~-----------i~-------~~~r~~lI~~~~~~Gf~ 145 (201)
.+.+-|+++++||+++||++==+ -. .+ .++..++|+.++++|++
T Consensus 165 g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 165 GVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred cchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 45677899999999999984221 11 11 37899999999999999
Q ss_pred Ecccccccc
Q 028948 146 AKPKFAVMF 154 (201)
Q Consensus 146 v~pE~g~k~ 154 (201)
|.-.+=...
T Consensus 245 VilDvV~NH 253 (605)
T TIGR02104 245 VIMDVVYNH 253 (605)
T ss_pred EEEEEEcCC
Confidence 965544433
No 174
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=73.95 E-value=9.6 Score=30.69 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=60.0
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC-ccHHHHHHHhCCchHHHHHHHHHHcCC-C
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF-D 116 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~qg~~~~~eyl~~~k~lGF-d 116 (201)
|.+.+..+|+.+|- +.+=+|- -.| .++.++.+.+++..+-. -.+.=.. -..+++.++.+++.|+ +
T Consensus 15 Gkniv~~~L~~~Gf--eVidLG~----~v~---~e~~v~aa~~~~adiVglS~L~t~~----~~~~~~~~~~l~~~gl~~ 81 (128)
T cd02072 15 GNKILDHAFTEAGF--NVVNLGV----LSP---QEEFIDAAIETDADAILVSSLYGHG----EIDCKGLREKCDEAGLKD 81 (128)
T ss_pred HHHHHHHHHHHCCC--EEEECCC----CCC---HHHHHHHHHHcCCCEEEEeccccCC----HHHHHHHHHHHHHCCCCC
Confidence 55667777776664 3344442 112 55667777777774422 1111000 0145677788888998 6
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
..=+=-|.+.+|.+++.+-++++++.||..
T Consensus 82 v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~ 111 (128)
T cd02072 82 ILLYVGGNLVVGKQDFEDVEKRFKEMGFDR 111 (128)
T ss_pred CeEEEECCCCCChhhhHHHHHHHHHcCCCE
Confidence 545556777889999999999999999864
No 175
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=73.83 E-value=11 Score=32.05 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=53.9
Q ss_pred HHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 77 KRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 77 ~l~~~~gV-~v~~-GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
++++++|| .++. |-..++|+.+- . ..+.++||+++=++|++-..+++.....++..+..|-+|..
T Consensus 139 ~~L~~~gi~~lvi~G~~t~~CV~~T--a-----~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~~ 205 (212)
T PTZ00331 139 QILKAHGVRRVFICGLAFDFCVLFT--A-----LDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILLT 205 (212)
T ss_pred HHHHHCCCCEEEEEEeccCHHHHHH--H-----HHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45678999 5554 66888998884 3 34668999999999999999999999999999999987753
No 176
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=73.79 E-value=13 Score=33.44 Aligned_cols=99 Identities=21% Similarity=0.330 Sum_probs=57.8
Q ss_pred HHHHHHHhhccc-cc-EEE-eeCccc---cccChhHHHHHHHHHHhCC-c-eecCccHHHHHHHhCCch-HHHHHHHHHH
Q 028948 42 VLEDIFESMGQF-VD-GLK-FSGGSH---SLMPKPFIEEVVKRAHQHD-V-YVSTGDWAEHLIRNGPSA-FKEYVEDCKQ 112 (201)
Q Consensus 42 ~l~DlLe~ag~y-ID-~lK-fg~GTs---~l~p~~~L~eKI~l~~~~g-V-~v~~GtlfE~al~qg~~~-~~eyl~~~k~ 112 (201)
+++.+++..+.. -+ .+| |--|++ ...|.+.+++..+.+++.+ + .+...+ .|+. -++.++.+++
T Consensus 54 ~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l~~~~~~~~i~~es--------rpd~i~~e~L~~l~~ 125 (313)
T TIGR01210 54 QFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKIAQRDNLKEVVVES--------RPEFIDEEKLEELRK 125 (313)
T ss_pred HHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHHHhcCCcceEEEEe--------CCCcCCHHHHHHHHH
Confidence 445555544432 11 235 533332 3567777888888887776 3 211111 1212 2678888899
Q ss_pred cCCC-EEEecCCcccCC-------------hhHHHHHHHHHHHCCCeEcccc
Q 028948 113 VGFD-TIELNVGSLEIP-------------EETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 113 lGFd-~IEISdGti~i~-------------~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
.|++ .|+| |.-+.+ .++-.+.++.+++.|+.|+.-+
T Consensus 126 aG~~~~v~i--G~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~ 175 (313)
T TIGR01210 126 IGVNVEVAV--GLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYL 175 (313)
T ss_pred cCCCEEEEE--ecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 9987 4665 333333 4444578999999999985543
No 177
>PHA02754 hypothetical protein; Provisional
Probab=73.75 E-value=2.4 Score=30.56 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.2
Q ss_pred hhHHHHHHHhhcccccEEEe
Q 028948 40 HNVLEDIFESMGQFVDGLKF 59 (201)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKf 59 (201)
.++++|.|+.+|-|||-+|.
T Consensus 20 MRelkD~LSe~GiYi~RIka 39 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKA 39 (67)
T ss_pred HHHHHHHHhhCceEEEEEEE
Confidence 46899999999999999985
No 178
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=73.75 E-value=9.7 Score=30.95 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCCceeEecC-CCCCCcchhHHHHHHHhhcccccEEEeeCccccccC-----hhHHHHHHHHHHhCCceecCccHHHHH
Q 028948 22 RRFGVTEMRSP-HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP-----KPFIEEVVKRAHQHDVYVSTGDWAEHL 95 (201)
Q Consensus 22 R~~GlTmV~Dk-G~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p-----~~~L~eKI~l~~~~gV~v~~GtlfE~a 95 (201)
|+.|....+|- |. +...++-+.+.. +|+||+...-..-+. ...++..+.+++.+|+.+.-.+-
T Consensus 142 ~~~G~~l~ld~~g~----~~~~~~~l~~~~---~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV---- 210 (240)
T cd01948 142 RALGVRIALDDFGT----GYSSLSYLKRLP---VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV---- 210 (240)
T ss_pred HHCCCeEEEeCCCC----cHhhHHHHHhCC---CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec----
Q ss_pred HHhCCchHHHHHHHHHHcCCCEE
Q 028948 96 IRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 96 l~qg~~~~~eyl~~~k~lGFd~I 118 (201)
.-.+-++.++++|++.+
T Consensus 211 ------e~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 211 ------ETEEQLELLRELGCDYV 227 (240)
T ss_pred ------CCHHHHHHHHHcCCCee
No 179
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=73.67 E-value=8.1 Score=33.33 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 028948 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISd 122 (201)
..-.+.++.++++||.+.|| |--|+.-.. ++|++.|-+==
T Consensus 88 ~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~-------------~~Ga~~vKlFP 129 (204)
T TIGR01182 88 GLTPELAKHAQDHGIPIIPGVATPSEIMLAL-------------ELGITALKLFP 129 (204)
T ss_pred CCCHHHHHHHHHcCCcEECCCCCHHHHHHHH-------------HCCCCEEEECC
Confidence 35678889999999999999 788887554 58898888754
No 180
>PRK12677 xylose isomerase; Provisional
Probab=73.47 E-value=6.8 Score=36.56 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChh----HHHHHHHHHHHCCCeEc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEE----TLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti---~i~~~----~r~~lI~~~~~~Gf~v~ 147 (201)
.+.+.++.++++||+.||+.+..+ +.+.. ...++-+.+++.|++|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVP 84 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeE
Confidence 588889999999999999986543 22332 24577777889999963
No 181
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=73.27 E-value=11 Score=32.59 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=72.9
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCce----ec-----CccHHHHH
Q 028948 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VS-----TGDWAEHL 95 (201)
Q Consensus 25 GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~----v~-----~GtlfE~a 95 (201)
++....|=|+ + .+..++.+|+.-.+ |.+.||+++.+++.+++.++.+.+. |. +. .-||-+
T Consensus 75 ~~pv~vgGGi--r-s~edv~~~l~~Ga~-----kvviGs~~l~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~-- 143 (241)
T PRK14024 75 DVKVELSGGI--R-DDESLEAALATGCA-----RVNIGTAALENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTR-- 143 (241)
T ss_pred CCCEEEcCCC--C-CHHHHHHHHHCCCC-----EEEECchHhCCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeee--
Confidence 4555566665 4 55666777775444 7899999999999999999888654 32 21 124544
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEecCC----cccCChhHHHHHHHHHHHC-CCeEccccccc
Q 028948 96 IRNGPSAFKEYVEDCKQVGFDTIELNVG----SLEIPEETLLRYVRLVKSA-GLKAKPKFAVM 153 (201)
Q Consensus 96 l~qg~~~~~eyl~~~k~lGFd~IEISdG----ti~i~~~~r~~lI~~~~~~-Gf~v~pE~g~k 153 (201)
... ...++++.+.++|++.+=+-+= +..=+ + .++|+++++. .+.|...=|+.
T Consensus 144 -~~~--~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d-~~~i~~i~~~~~ipviasGGi~ 200 (241)
T PRK14024 144 -DGG--DLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--N-LELLREVCARTDAPVVASGGVS 200 (241)
T ss_pred -cCc--cHHHHHHHHHhcCCCEEEEEeecCCCCccCC--C-HHHHHHHHhhCCCCEEEeCCCC
Confidence 222 6788999999999998877543 33322 3 3666666664 45555544444
No 182
>PLN02389 biotin synthase
Probab=73.17 E-value=27 Score=32.61 Aligned_cols=69 Identities=22% Similarity=0.195 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHH
Q 028948 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVK 140 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti---------~i~~~~r~~lI~~~~ 140 (201)
+.+.+.++.+++.++.++ ...| -.-++-++..|+.|+|.+-++--+. .-+-++|++.|+.++
T Consensus 153 e~i~eiir~ik~~~l~i~--------~s~G-~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~ 223 (379)
T PLN02389 153 NQILEYVKEIRGMGMEVC--------CTLG-MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVR 223 (379)
T ss_pred HHHHHHHHHHhcCCcEEE--------ECCC-CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHH
Confidence 467788888888787765 2222 2345677788899999887654432 246788999999999
Q ss_pred HCCCeEc
Q 028948 141 SAGLKAK 147 (201)
Q Consensus 141 ~~Gf~v~ 147 (201)
+.|++|.
T Consensus 224 ~~Gi~v~ 230 (379)
T PLN02389 224 EAGISVC 230 (379)
T ss_pred HcCCeEe
Confidence 9999883
No 183
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=73.03 E-value=27 Score=30.75 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=51.0
Q ss_pred hHHHHHHHhhccc--ccEEEee-------C-ccccccChhHHHHHHHHHHhC-CceecCc-cHHHHHHHhCCchHHHHHH
Q 028948 41 NVLEDIFESMGQF--VDGLKFS-------G-GSHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVE 108 (201)
Q Consensus 41 ~~l~DlLe~ag~y--ID~lKfg-------~-GTs~l~p~~~L~eKI~l~~~~-gV~v~~G-tlfE~al~qg~~~~~eyl~ 108 (201)
..+.+..+.+-++ .|++=+- . |.......+.+.+-++-.++. ++++..= +. +.+.+.++.+
T Consensus 104 ~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-------~~~~~~~~a~ 176 (301)
T PRK07259 104 EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-------NVTDIVEIAK 176 (301)
T ss_pred HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-------CchhHHHHHH
Confidence 3444444444455 7777551 1 556667778899999988887 6655541 11 1124667788
Q ss_pred HHHHcCCCEEEecCCcc
Q 028948 109 DCKQVGFDTIELNVGSL 125 (201)
Q Consensus 109 ~~k~lGFd~IEISdGti 125 (201)
.+.+.|.|.|.+++.+.
T Consensus 177 ~l~~~G~d~i~~~nt~~ 193 (301)
T PRK07259 177 AAEEAGADGLSLINTLK 193 (301)
T ss_pred HHHHcCCCEEEEEcccc
Confidence 89999999999977554
No 184
>PRK05985 cytosine deaminase; Provisional
Probab=72.96 E-value=18 Score=32.77 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc--ccCChhHHHHHHHHHHHCC
Q 028948 69 KPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS--LEIPEETLLRYVRLVKSAG 143 (201)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~eyl~~~k~lGFd-~IEISdGt--i~i~~~~r~~lI~~~~~~G 143 (201)
++.|++.+++|++||+.+.. ...-+.. . ..++++++.++++|+. .+-++=.+ -.++++++.++|+++++.|
T Consensus 190 ~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~--~--~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g 265 (391)
T PRK05985 190 EGQLDIVFGLAERHGVGIDIHLHEPGELG--A--FQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAG 265 (391)
T ss_pred HHHHHHHHHHHHHhCCCcEEeeCCCCCcc--H--HHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcC
Confidence 36789999999999987633 2111111 1 1455677777888885 23333332 2567778889999999999
Q ss_pred CeEccc
Q 028948 144 LKAKPK 149 (201)
Q Consensus 144 f~v~pE 149 (201)
..|...
T Consensus 266 ~~v~~~ 271 (391)
T PRK05985 266 VAIMTN 271 (391)
T ss_pred CeEEEe
Confidence 988543
No 185
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=72.59 E-value=9.6 Score=36.94 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc--------------cC-----ChhHHHHHHHHHHHCCCeEccccccccCC
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSL--------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti--------------~i-----~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~ 156 (201)
+.+-++++++|||++|.++-=+- .+ +.++..++|+.|+++|++|.-.+=....+
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~ 101 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTS 101 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 44456677888888887753211 11 23789999999999999997665555443
No 186
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=72.58 E-value=35 Score=29.04 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCceec----C-ccHHH------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH-
Q 028948 72 IEEVVKRAHQHDVYVS----T-GDWAE------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET- 131 (201)
Q Consensus 72 L~eKI~l~~~~gV~v~----~-GtlfE------------~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~--i~~~~- 131 (201)
+++.-+++.++|+.++ | ++|.. .... . .+++.++.|++||.+.|-+-.|... .+.++
T Consensus 42 ~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~ 118 (258)
T PRK09997 42 IEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFR-D--GVAAAIRYARALGNKKINCLVGKTPAGFSSEQI 118 (258)
T ss_pred HHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHH-H--HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHH
Confidence 7777788889999875 2 44432 1111 2 5889999999999999988666542 22222
Q ss_pred H-------HHHHHHHHHCCCeEccc
Q 028948 132 L-------LRYVRLVKSAGLKAKPK 149 (201)
Q Consensus 132 r-------~~lI~~~~~~Gf~v~pE 149 (201)
+ .++.+.+++.|+++--|
T Consensus 119 ~~~~~~~l~~l~~~a~~~Gv~l~lE 143 (258)
T PRK09997 119 HATLVENLRYAANMLMKEDILLLIE 143 (258)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 2 34456777889887666
No 187
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=72.00 E-value=6.8 Score=30.25 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEc
Q 028948 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 100 ~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
++...+.+++|.++|...|=+-.| ..-.++++.++++|+++.
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT------S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc------hHHHHHHHHHHHcCCEEE
Confidence 348999999999999999999888 555689999999999986
No 188
>PRK08508 biotin synthase; Provisional
Probab=71.91 E-value=29 Score=30.67 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhC--Ccee--cCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHH
Q 028948 70 PFIEEVVKRAHQH--DVYV--STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYV 136 (201)
Q Consensus 70 ~~L~eKI~l~~~~--gV~v--~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti---------~i~~~~r~~lI 136 (201)
+.+.+.++..|+. ++.+ +.|-+ -++-+++.|+.|++.+-++.-+- .-+-+++.+.|
T Consensus 75 e~~~ei~~~ik~~~p~l~i~~s~G~~-----------~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i 143 (279)
T PRK08508 75 EYVAEAAKAVKKEVPGLHLIACNGTA-----------SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTC 143 (279)
T ss_pred HHHHHHHHHHHhhCCCcEEEecCCCC-----------CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHH
Confidence 4567777777776 4444 32322 26677778888888876653332 23447788888
Q ss_pred HHHHHCCCeEcc
Q 028948 137 RLVKSAGLKAKP 148 (201)
Q Consensus 137 ~~~~~~Gf~v~p 148 (201)
+.+++.|+++..
T Consensus 144 ~~a~~~Gi~v~s 155 (279)
T PRK08508 144 ENAKEAGLGLCS 155 (279)
T ss_pred HHHHHcCCeecc
Confidence 889999988833
No 189
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=71.89 E-value=27 Score=31.13 Aligned_cols=94 Identities=12% Similarity=0.129 Sum_probs=61.9
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccChhH---HHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHH-HcCC
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPF---IEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK-QVGF 115 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~---L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~eyl~~~k-~lGF 115 (201)
++...+++..++|+..+|+|+.-..-+..+. |++.++.+|++|.+|..- =+..+- +-+..|.+..- .+|+
T Consensus 41 ~f~~~ii~~l~~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIp-----nTv~~~a~a~~~~~g~ 115 (261)
T TIGR02127 41 AFCLRIIDATAEYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIG-----STASAYAKAWLGHLHA 115 (261)
T ss_pred HHHHHHHHhcCCcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChH-----HHHHHHHHHHHhhcCC
Confidence 3467899999999999999997666554433 677779999999877653 233322 13344554444 6788
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHC
Q 028948 116 DTIELNVGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 116 d~IEISdGti~i~~~~r~~lI~~~~~~ 142 (201)
|+|-++- -+..+....+++.+.+.
T Consensus 116 D~vTvh~---~~G~d~l~~~~~~~~~~ 139 (261)
T TIGR02127 116 DALTVSP---YLGLDSLRPFLEYARAN 139 (261)
T ss_pred CEEEECC---cCCHHHHHHHHHHHhhc
Confidence 8888874 44455555555555543
No 190
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=71.58 E-value=9.6 Score=37.16 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc---------c-----C-----ChhHHHHHHHHHHHCCCeEccccccccC
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSL---------E-----I-----PEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti---------~-----i-----~~~~r~~lI~~~~~~Gf~v~pE~g~k~~ 155 (201)
+.+-++++++|||++|.++-=+. . + +.++..++|+.++++|++|.-.+=....
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~ 106 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHT 106 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 44557888999999998854221 1 1 2368999999999999999655544443
No 191
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=71.35 E-value=14 Score=32.31 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=10.0
Q ss_pred CCCceeEecCCC
Q 028948 23 RFGVTEMRSPHY 34 (201)
Q Consensus 23 ~~GlTmV~DkG~ 34 (201)
..|+|.|+|.|-
T Consensus 53 ~~GvTtv~d~g~ 64 (342)
T cd01299 53 RAGFTTVRDAGG 64 (342)
T ss_pred hCCCcEEEeCCC
Confidence 349999999984
No 192
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=71.32 E-value=13 Score=37.46 Aligned_cols=71 Identities=17% Similarity=0.079 Sum_probs=50.7
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
+++-.++.|+.+|++||.+. +|+--+.|..- ++++|++.+ .-.+.+++|.++|+..++.|-.
T Consensus 447 ~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~i-----------A~~lGI~~v-----~a~~~PedK~~~v~~lq~~g~~ 510 (675)
T TIGR01497 447 VKGGIKERFAQLRKMGIKTIMITGDNRLTAAAI-----------AAEAGVDDF-----IAEATPEDKIALIRQEQAEGKL 510 (675)
T ss_pred chhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH-----------HHHcCCCEE-----EcCCCHHHHHHHHHHHHHcCCe
Confidence 45558889999999998554 57655555444 488888754 3468899999999999999865
Q ss_pred E-cccccccc
Q 028948 146 A-KPKFAVMF 154 (201)
Q Consensus 146 v-~pE~g~k~ 154 (201)
| -.-.|+.+
T Consensus 511 VamvGDG~ND 520 (675)
T TIGR01497 511 VAMTGDGTND 520 (675)
T ss_pred EEEECCCcch
Confidence 4 34444443
No 193
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=71.25 E-value=26 Score=29.55 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCCceecC-----ccHHH-----------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH--
Q 028948 72 IEEVVKRAHQHDVYVST-----GDWAE-----------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET-- 131 (201)
Q Consensus 72 L~eKI~l~~~~gV~v~~-----GtlfE-----------~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~--i~~~~-- 131 (201)
+++.-+++.++|+.++. +.|.. ..-.. +.+++.++.|++||...|-+-.|... .+.++
T Consensus 41 ~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~ 118 (254)
T TIGR03234 41 AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFR--EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEAR 118 (254)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHH--HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHH
Confidence 77778899999998763 22310 00011 26788999999999999998888653 22222
Q ss_pred ------HHHHHHHHHHCCCeEcccc
Q 028948 132 ------LLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 132 ------r~~lI~~~~~~Gf~v~pE~ 150 (201)
..++.+.|++.|.++..|-
T Consensus 119 ~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 119 ATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3566778888999887763
No 194
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=71.24 E-value=17 Score=34.37 Aligned_cols=97 Identities=6% Similarity=0.016 Sum_probs=64.2
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHH-HHHHHHcCCC
Q 028948 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEY-VEDCKQVGFD 116 (201)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~ey-l~~~k~lGFd 116 (201)
.+.....+++..+++ ++++|+|+--..-+..+.+++.-+...+ ..+..- .. ..+ ...| .+.+.+.|.|
T Consensus 183 ~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~--~~I~~D----LK-~~D---i~~~vv~~~a~aGAD 252 (391)
T PRK13307 183 DLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPD--AFIVAD----LK-TLD---TGNLEARMAADATAD 252 (391)
T ss_pred CHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCC--CeEEEE----ec-ccC---hhhHHHHHHHhcCCC
Confidence 677888899999999 9999999876666665555554443211 112111 01 111 2344 6677888999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
.+-|.-- -+.+.-.+.++.+++.|.++..
T Consensus 253 ~vTVH~e---a~~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 253 AVVISGL---APISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred EEEEecc---CCHHHHHHHHHHHHHcCCEEEE
Confidence 9988853 2455677888999999988755
No 195
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.23 E-value=4.4 Score=35.81 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhC---Cc----eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC----------hhHH
Q 028948 70 PFIEEVVKRAHQH---DV----YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP----------EETL 132 (201)
Q Consensus 70 ~~L~eKI~l~~~~---gV----~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~----------~~~r 132 (201)
..+.|.|+-.++. ++ ++.+..+.+.-+.. +...++++.+.++|.|.|+||.|+..-+ ....
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~--~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~ 269 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTL--EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYF 269 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCH--HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchh
Confidence 3456666666653 33 33443322211111 2456778888899999999999986432 2334
Q ss_pred HHHHHHHHHC
Q 028948 133 LRYVRLVKSA 142 (201)
Q Consensus 133 ~~lI~~~~~~ 142 (201)
.++++.+++.
T Consensus 270 ~~~~~~ir~~ 279 (327)
T cd02803 270 LELAEKIKKA 279 (327)
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 196
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=71.17 E-value=25 Score=29.96 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHhCCceecC---ccH--H------HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cC-Ch-----
Q 028948 69 KPFIEEVVKRAHQHDVYVST---GDW--A------EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EI-PE----- 129 (201)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~---Gtl--f------E~al~qg~~~~~eyl~~~k~lGFd~IEISdGti--~i-~~----- 129 (201)
...+++--++++++||.++. ++. + +....+.-..+++.++.|+.||.+.|=+..+.. .- ++
T Consensus 51 ~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~ 130 (284)
T PRK13210 51 KEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR 130 (284)
T ss_pred HHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH
Confidence 44578888899999997752 210 1 111111112578899999999999997753221 11 11
Q ss_pred --hHHHHHHHHHHHCCCeEcccc
Q 028948 130 --ETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 130 --~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
+...++.+.+++.|++...|-
T Consensus 131 ~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 131 FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEe
Confidence 224567788888898875554
No 197
>PRK09505 malS alpha-amylase; Reviewed
Probab=71.10 E-value=9.7 Score=38.43 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc----------------------------cC-----ChhHHHHHHHHHHHCCCeEccc
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSL----------------------------EI-----PEETLLRYVRLVKSAGLKAKPK 149 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti----------------------------~i-----~~~~r~~lI~~~~~~Gf~v~pE 149 (201)
+.+-|+++++|||++|-||--+- .| +.++..++|+.++++|++|.-.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55567899999999999874211 11 3478999999999999999665
Q ss_pred cccccCC
Q 028948 150 FAVMFNK 156 (201)
Q Consensus 150 ~g~k~~~ 156 (201)
+=.....
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 5544433
No 198
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=71.01 E-value=57 Score=29.70 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=60.5
Q ss_pred CccccccChhHHHHHHHHHHhCC--ceecCccHHHHHHHhC--CchHHHHHHHHHHcCCCE-----EEecC----Ccc--
Q 028948 61 GGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDT-----IELNV----GSL-- 125 (201)
Q Consensus 61 ~GTs~l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg--~~~~~eyl~~~k~lGFd~-----IEISd----Gti-- 125 (201)
.|...-.+-+.+.+.++..+++. +.+..=+..|+..... ....++-++.+|+.|++. +|+-+ ..+
T Consensus 103 ~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~ 182 (351)
T TIGR03700 103 GGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICP 182 (351)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCC
Confidence 45544455577889999998874 5544436777764332 124678899999999864 55532 111
Q ss_pred -cCChhHHHHHHHHHHHCCCeEcc
Q 028948 126 -EIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 126 -~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
..+.++|++.|+.+++.|+++..
T Consensus 183 ~~~~~~~~l~~i~~a~~~Gi~~~s 206 (351)
T TIGR03700 183 EKISAERWLEIHRTAHELGLKTNA 206 (351)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcce
Confidence 46778889999999999999855
No 199
>PRK12568 glycogen branching enzyme; Provisional
Probab=70.89 E-value=9.8 Score=38.82 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCc----------c-----c-----CChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 103 FKEYVEDCKQVGFDTIELNVGS----------L-----E-----IPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGt----------i-----~-----i~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
.++.+.++|+|||++||++-=+ - . =+.++..++|+.+.++|++|+-++=...
T Consensus 272 a~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH 343 (730)
T PRK12568 272 AEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAH 343 (730)
T ss_pred HHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 4566889999999999986321 1 1 1356889999999999999966554433
No 200
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=70.84 E-value=9.9 Score=38.21 Aligned_cols=91 Identities=16% Similarity=0.080 Sum_probs=56.0
Q ss_pred HhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceec---CccHHH---HHHHhCCchHHHHHHHHHHcCCCEEEec
Q 028948 48 ESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---TGDWAE---HLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (201)
Q Consensus 48 e~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~---~GtlfE---~al~qg~~~~~eyl~~~k~lGFd~IEIS 121 (201)
.+++.-+|.-.+-|..+.- . ...+-...+ .|-+| .|+|-- .=+.+ ..++-+.+|++|||++||+.
T Consensus 115 ~~aS~v~~~~~y~W~d~~~-~---~~~~~~~~e--~~vIYElHvGs~~~~~~~~~~e---~a~~llpYl~elG~T~IELM 185 (628)
T COG0296 115 HTASQVVDLPDYEWQDERW-D---RAWRGRFWE--PIVIYELHVGSFTPDRFLGYFE---LAIELLPYLKELGITHIELM 185 (628)
T ss_pred CCcceecCCCCcccccccc-c---ccccCCCCC--CceEEEEEeeeccCCCCcCHHH---HHHHHhHHHHHhCCCEEEEc
Confidence 3455556665666664433 1 122222222 44444 487644 11222 45678899999999999985
Q ss_pred C-------------Ccc-------cCChhHHHHHHHHHHHCCCeEc
Q 028948 122 V-------------GSL-------EIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 122 d-------------Gti-------~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
- |+. ==++++..++|+.+.++|+-|+
T Consensus 186 Pv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgVi 231 (628)
T COG0296 186 PVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVI 231 (628)
T ss_pred ccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 111 1157889999999999999993
No 201
>PRK05402 glycogen branching enzyme; Provisional
Probab=70.61 E-value=9.8 Score=38.26 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------------cC-----ChhHHHHHHHHHHHCCCeEcccccc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSL---------------EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti---------------~i-----~~~~r~~lI~~~~~~Gf~v~pE~g~ 152 (201)
-.++.+.++|+||+++||++-=+- .+ +.++..++|+.++++|++|+-.+=.
T Consensus 267 i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 267 LADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 345556889999999999864321 11 2568899999999999999655443
No 202
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=70.36 E-value=15 Score=35.37 Aligned_cols=87 Identities=13% Similarity=-0.022 Sum_probs=69.1
Q ss_pred ccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 028948 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (201)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISd 122 (201)
.+.+-+-..||-++-+ +.+++-+++++++|..|..+ .|.+..-+++.+.+.++.+.+.|-+.|-+.|
T Consensus 90 ~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~--~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 167 (494)
T TIGR00973 90 KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS--CEDAGRTEIPFLARIVEAAINAGATTINIPD 167 (494)
T ss_pred CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE--cCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5667676777666532 33558899999999887766 3444455566888899999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHC
Q 028948 123 GSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~ 142 (201)
-.--+.+++-.++|+.++++
T Consensus 168 TvG~~~P~~~~~~i~~l~~~ 187 (494)
T TIGR00973 168 TVGYALPAEYGNLIKGLREN 187 (494)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 203
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=70.32 E-value=8.6 Score=37.50 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=66.5
Q ss_pred HHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc
Q 028948 73 EEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 73 ~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
++-+++++++|..|..+ .||+ ++...++.+.++++.+.+.|-+.|=|.|-.--+.+.+-.++|+.++++ +. .+.+
T Consensus 125 ~~~v~~ak~~g~~V~~~~e~f~D-~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~-~~-~~~i 201 (526)
T TIGR00977 125 YDTVAYLKRQGDEVIYDAEHFFD-GYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS-LK-QPQL 201 (526)
T ss_pred HHHHHHHHHcCCeEEEEeeeeee-cccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh-CC-CCEE
Confidence 45688999999988643 3543 334566789999999999999999999988888889999999999876 32 2335
Q ss_pred ccccCC----------CCcccccc
Q 028948 151 AVMFNK----------SDIPSDRD 164 (201)
Q Consensus 151 g~k~~~----------~dl~ag~~ 164 (201)
++...+ ..+.+|++
T Consensus 202 ~vH~HND~GlAvANslaAv~AGA~ 225 (526)
T TIGR00977 202 GIHAHNDSGTAVANSLLAVEAGAT 225 (526)
T ss_pred EEEECCCCChHHHHHHHHHHhCCC
Confidence 554332 34667777
No 204
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=70.19 E-value=6.9 Score=34.04 Aligned_cols=75 Identities=17% Similarity=0.288 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------ChhHHHHHHHHHHHC-CCeEcccccccc--------CCCCcccccc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------PEETLLRYVRLVKSA-GLKAKPKFAVMF--------NKSDIPSDRD 164 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i--------~~~~r~~lI~~~~~~-Gf~v~pE~g~k~--------~~~dl~ag~~ 164 (201)
.+.+..+.+.+.|+|+|||+-++-.. ..+.-.++++.+++. ++.+..-++.-. ...-.++|+|
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad 191 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGAD 191 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 55666777788899999998775432 234556788888876 333322111111 1112345666
Q ss_pred cccccEEEecccCcCee
Q 028948 165 RAFGAYVARAPRSTDKL 181 (201)
Q Consensus 165 ~a~g~~Vi~E~Res~~v 181 (201)
.|.+-.+..+..
T Consensus 192 -----~i~~~~~~~~~~ 203 (289)
T cd02810 192 -----GLTAINTISGRV 203 (289)
T ss_pred -----EEEEEcccCccc
Confidence 888877766544
No 205
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=70.11 E-value=27 Score=31.78 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=72.7
Q ss_pred chhHHHHHHHhhcccccE---EEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C----CchHHHHH
Q 028948 39 SHNVLEDIFESMGQFVDG---LKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G----PSAFKEYV 107 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~---lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g----~~~~~eyl 107 (201)
.+..++++++..-.++.. ..+.. -.-|..+-.+++++++++|+ .++.| ++=+..+.. + .+.+.+.+
T Consensus 66 ~~~~l~~ll~~i~~~~~~~~~~eit~---e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i 142 (377)
T PRK08599 66 SAEQLERLLTAIHRNLPLSGLEEFTF---EANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAI 142 (377)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCEEEE---EeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHH
Confidence 678999999998887543 23432 34555666899999999999 66667 554444422 1 13466778
Q ss_pred HHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 108 EDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 108 ~~~k~lGFd~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
+.+++.||+.| -+--|.=.-+.+++.+.++.+.+.+..
T Consensus 143 ~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~ 182 (377)
T PRK08599 143 ANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALALDIP 182 (377)
T ss_pred HHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHccCCC
Confidence 88889999854 444566566777888889998887754
No 206
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=69.94 E-value=18 Score=35.26 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=68.5
Q ss_pred chhHHHHHHHhhcc-cccEEEee------CccccccChhHHHHHHHHHHhCCceecC-cc-HHHHHH--------HhCCc
Q 028948 39 SHNVLEDIFESMGQ-FVDGLKFS------GGSHSLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLI--------RNGPS 101 (201)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg------~GTs~l~p~~~L~eKI~l~~~~gV~v~~-Gt-lfE~al--------~qg~~ 101 (201)
.+..+++.+...|+ -|-++-.. +|+ .+|-+.+++.-++||+|||++.. |. +||.|+ .++ -
T Consensus 168 dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGq--pvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~-~ 244 (467)
T TIGR02617 168 DLEGLERGIEEVGPNNVPYIVATITCNSAGGQ--PVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKN-W 244 (467)
T ss_pred CHHHHHHHHhhcCCCCceeeeeeEEEecCCCE--EeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcC-C
Confidence 67788899887552 23333322 233 56777899999999999999998 65 999664 222 3
Q ss_pred hHHHHHHHHHHcCCCEEEecC---------CcccCChhHHHHHHHHHHHC
Q 028948 102 AFKEYVEDCKQVGFDTIELNV---------GSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISd---------Gti~i~~~~r~~lI~~~~~~ 142 (201)
.+.++.++.-+ .||.|-+|- |.+-.+++.+.++-++++..
T Consensus 245 si~eI~rE~~~-~aDsvt~slsKglgApvGg~Lag~d~~~~~l~~~~~~~ 293 (467)
T TIGR02617 245 SIEQITRETYK-YADMLAMSAKKDAMVPMGGLLCFKDDSFFDVYTECRTL 293 (467)
T ss_pred CHHHHHHHhhc-cCCEEEEEcCCCCCCcccceEEecchhHHHHHHHHHhh
Confidence 57777765544 378888773 45567777677777776663
No 207
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=69.93 E-value=8 Score=34.60 Aligned_cols=136 Identities=12% Similarity=-0.036 Sum_probs=79.0
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCc-----hHH
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-----AFK 104 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~-----~~~ 104 (201)
+.++..+++ -+|.+-+-..+|-.+.+ +.+++-+++++++|+.|..+- |-+..-+++ -++
T Consensus 78 ~die~A~~~---g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~~ 152 (279)
T cd07947 78 EDLKLVKEM---GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFVN 152 (279)
T ss_pred HHHHHHHHc---CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHHH
Confidence 345555554 44566666666544443 236778899999998766432 333333221 466
Q ss_pred HHHHHHHHcCCC-EEEecCCcccCCh-------hHHHHHHHHHHHCCCeEcc--ccccccCC----------CCcccccc
Q 028948 105 EYVEDCKQVGFD-TIELNVGSLEIPE-------ETLLRYVRLVKSAGLKAKP--KFAVMFNK----------SDIPSDRD 164 (201)
Q Consensus 105 eyl~~~k~lGFd-~IEISdGti~i~~-------~~r~~lI~~~~~~Gf~v~p--E~g~k~~~----------~dl~ag~~ 164 (201)
++++.+.+.|.+ .|=+.|-.--..+ ++-.++++.+++. +. .| +++..+.+ ..+.+|++
T Consensus 153 ~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~-~~-~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~ 230 (279)
T cd07947 153 KLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKD-CG-VPSENLEWHGHNDFYKAVANAVAAWLYGAS 230 (279)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHh-cC-CCCceEEEEecCCCChHHHHHHHHHHhCCC
Confidence 667777779999 6888887764444 4455888888765 21 23 23443322 34677777
Q ss_pred cccccEEEecccCcCeeccccCCcee
Q 028948 165 RAFGAYVARAPRSTDKLFLASNPEIE 190 (201)
Q Consensus 165 ~a~g~~Vi~E~Res~~v~~~~~~~~~ 190 (201)
+| +.-=.|.=.-+.|+++|
T Consensus 231 -----~v--d~sv~GlGe~aGN~~tE 249 (279)
T cd07947 231 -----WV--NCTLLGIGERTGNCPLE 249 (279)
T ss_pred -----EE--EEecccccccccchhHH
Confidence 33 33333333457777766
No 208
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=69.80 E-value=13 Score=30.11 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=58.0
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~qg~~~~~eyl~~~k~lGFd~ 117 (201)
|.+-+.-+|+.+|-= .+=+|- -.| ..+.++.++++++.+-. -.+. .+.-..+++..+.+++.|...
T Consensus 17 Gk~iv~~~l~~~Gfe--Vi~LG~----~v~---~e~~v~aa~~~~adiVglS~l~----~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 17 GNKILDHAFTNAGFN--VVNLGV----LSP---QEEFIKAAIETKADAILVSSLY----GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred hHHHHHHHHHHCCCE--EEECCC----CCC---HHHHHHHHHHcCCCEEEEeccc----ccCHHHHHHHHHHHHHCCCCC
Confidence 556667777776643 333332 111 55667777777774432 2222 111113667778888888744
Q ss_pred EEe-cCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 118 IEL-NVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 118 IEI-SdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+=| =-|.+.+|++++....+++++.||..
T Consensus 84 ~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~ 113 (134)
T TIGR01501 84 ILLYVGGNLVVGKQDFPDVEKRFKEMGFDR 113 (134)
T ss_pred CEEEecCCcCcChhhhHHHHHHHHHcCCCE
Confidence 434 67777888888877888888888764
No 209
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=69.62 E-value=11 Score=35.26 Aligned_cols=87 Identities=17% Similarity=0.225 Sum_probs=55.5
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcc----------cccEEEeeCccccccChhHHHHHHHHHHhCCceecC-cc-HH
Q 028948 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQ----------FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GD-WA 92 (201)
Q Consensus 25 GlTmV~DkG~s~~~g~~~l~DlLe~ag~----------yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-Gt-lf 92 (201)
|...++++|-.-...+..+++-+.. .+ ++--.. -.|| |||.+.|++..+++|+||+++.- |. ++
T Consensus 99 ~~~~~~~~g~~Gklt~e~v~~~i~~-~d~~~~~~~~~~~e~~~t-e~Gt--Vy~l~el~~i~~~~k~~~l~LHmDGAR~~ 174 (342)
T COG2008 99 GQKLPIVPGADGKLTPEDVEAAIRP-DDIHHAPTPLAVLENTAT-EGGT--VYPLDELEAISAVCKEHGLPLHMDGARLA 174 (342)
T ss_pred CceeccCCCCCCCcCHHHHHHhhcC-CCcccCCCceEEEeeccC-CCce--ecCHHHHHHHHHHHHHhCCceeechHHHH
Confidence 4666677754222244455554443 22 111122 2355 99999999999999999999999 63 99
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 028948 93 EHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (201)
Q Consensus 93 E~al~qg~~~~~eyl~~~k~lGFd~IEIS 121 (201)
..+..-|+ ...+|- .|||.+-|.
T Consensus 175 nA~valg~-~~~~~~-----~~~D~v~~~ 197 (342)
T COG2008 175 NALVALGV-ALKTIK-----SYVDSVSFC 197 (342)
T ss_pred HHHHHcCC-CHHHHH-----hhCCEEEEe
Confidence 99998873 344443 356666654
No 210
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=69.57 E-value=19 Score=27.46 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=58.5
Q ss_pred eeCccccccChhHHHHHHHHHHhCC-ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--------cCCh
Q 028948 59 FSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--------EIPE 129 (201)
Q Consensus 59 fg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti--------~i~~ 129 (201)
+|=||..-. .+..++..+.+++.+ ..+++| ++| + +. .+++-+++|.+-|.+.|-+-=-++ |||.
T Consensus 6 vgHGSr~~~-~~~~~~l~~~l~~~~~~~v~~~-~lE-~--~P--~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dipg 78 (103)
T cd03413 6 MGHGTDHPS-NAVYAALEYVLREEDPANVFVG-TVE-G--YP--GLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMAG 78 (103)
T ss_pred EECCCCchh-hhHHHHHHHHHHhcCCCcEEEE-EEc-C--CC--CHHHHHHHHHHcCCCEEEEEehhheecccchhcCCC
Confidence 444555443 355666666666654 445444 445 2 44 789999999999999988765554 7888
Q ss_pred hHHHHHHHHHHHCCCeEccc
Q 028948 130 ETLLRYVRLVKSAGLKAKPK 149 (201)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v~pE 149 (201)
++--++-.++.+.|++|.+.
T Consensus 79 e~~~SW~~~l~~~g~~v~~~ 98 (103)
T cd03413 79 DEPDSWKSILEAAGIKVETV 98 (103)
T ss_pred CCchhHHHHHHHCCCeeEEE
Confidence 87678888888889999775
No 211
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=69.22 E-value=6 Score=41.36 Aligned_cols=68 Identities=18% Similarity=0.363 Sum_probs=49.7
Q ss_pred HHHHHHHHHhCCc-eecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 72 IEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 72 L~eKI~l~~~~gV-~v~~G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
+.|.|++|+++|+ -++|| ||+ +.+ .+|-+.|.+-|+..|==+--.+++ .-+|.+....|.+.|+.|.|
T Consensus 69 IdeII~iAk~~gaDaIhPGYGfL----SEn----~efA~~c~eaGI~FIGP~~e~ld~-~GdKv~Ar~~A~~agvPvip 138 (1149)
T COG1038 69 IDEIIRIAKRSGADAIHPGYGFL----SEN----PEFARACAEAGITFIGPKPEVLDM-LGDKVKARNAAIKAGVPVIP 138 (1149)
T ss_pred HHHHHHHHHHcCCCeecCCcccc----cCC----HHHHHHHHHcCCEEeCCCHHHHHH-hccHHHHHHHHHHcCCCccC
Confidence 8899999999999 78899 864 445 678888888888877555544443 23455666777777777755
No 212
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=69.03 E-value=6.8 Score=34.93 Aligned_cols=76 Identities=25% Similarity=0.338 Sum_probs=47.6
Q ss_pred cChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh-----------hHHHHH
Q 028948 67 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE-----------ETLLRY 135 (201)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~-----------~~r~~l 135 (201)
-..+.|++.|+.+|++||.||. | =+| -.+-++.++++|.|+||+-.|...-.. +.....
T Consensus 108 ~~~~~l~~~i~~L~~~gIrvSL--F------iDP--~~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~a 177 (239)
T PF03740_consen 108 GNRDRLKPVIKRLKDAGIRVSL--F------IDP--DPEQIEAAKELGADRVELHTGPYANAFDDAEEAEEELLERLRDA 177 (239)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEE--E------E-S---HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCEEEE--E------eCC--CHHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHH
Confidence 3457799999999999999985 1 111 134467889999999999998762211 112233
Q ss_pred HHHHHHCCCeEcccccc
Q 028948 136 VRLVKSAGLKAKPKFAV 152 (201)
Q Consensus 136 I~~~~~~Gf~v~pE~g~ 152 (201)
-+.+++.||.|..-=|.
T Consensus 178 a~~a~~lGL~VnAGHgL 194 (239)
T PF03740_consen 178 ARYAHELGLGVNAGHGL 194 (239)
T ss_dssp HHHHHHTT-EEEEETT-
T ss_pred HHHHHHcCCEEecCCCC
Confidence 45677889988553333
No 213
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=69.02 E-value=12 Score=33.86 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=49.4
Q ss_pred ccChhHHHHHHHHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCC
Q 028948 66 LMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (201)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV-~v~~-GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~G 143 (201)
-++.+.+++.|+.+++.|+ .+.. || |-.+ +. .+.+.++++++.|+...=++||++ |+++ .++.+++.|
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~GG--EPll-~~--~~~~il~~~~~~g~~~~i~TNG~l-l~~~----~~~~L~~~g 114 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFSGG--EPLL-RK--DLEELVAHARELGLYTNLITSGVG-LTEA----RLAALKDAG 114 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEECC--ccCC-ch--hHHHHHHHHHHcCCcEEEECCCcc-CCHH----HHHHHHHcC
Confidence 4666778999999999997 3433 53 3333 22 588999999999998888889975 5543 345566666
Q ss_pred Ce
Q 028948 144 LK 145 (201)
Q Consensus 144 f~ 145 (201)
+.
T Consensus 115 ~~ 116 (378)
T PRK05301 115 LD 116 (378)
T ss_pred CC
Confidence 54
No 214
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=68.86 E-value=25 Score=32.65 Aligned_cols=97 Identities=20% Similarity=0.379 Sum_probs=55.2
Q ss_pred chhHHHHHHHhhcc--cccEEEe--eCccccccChhHHHHHHHHHHh----CCce--ecC-ccHHHHHHHhCCchHHHHH
Q 028948 39 SHNVLEDIFESMGQ--FVDGLKF--SGGSHSLMPKPFIEEVVKRAHQ----HDVY--VST-GDWAEHLIRNGPSAFKEYV 107 (201)
Q Consensus 39 g~~~l~DlLe~ag~--yID~lKf--g~GTs~l~p~~~L~eKI~l~~~----~gV~--v~~-GtlfE~al~qg~~~~~eyl 107 (201)
....++.+++.+.+ =+..+-| .+|=-.|.+...+++.+++.++ .+|. +-| |+++- ++..
T Consensus 49 s~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~----------~e~~ 118 (412)
T PRK13745 49 SDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLT----------DEWC 118 (412)
T ss_pred CHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCC----------HHHH
Confidence 44466666554322 1244444 4477777777677777777653 2343 334 66553 3445
Q ss_pred HHHHHcCCCEEEec-CCcccCChhH------------HHHHHHHHHHCCCeE
Q 028948 108 EDCKQVGFDTIELN-VGSLEIPEET------------LLRYVRLVKSAGLKA 146 (201)
Q Consensus 108 ~~~k~lGFd~IEIS-dGti~i~~~~------------r~~lI~~~~~~Gf~v 146 (201)
+.+++.+| .|-|| ||.-++-+.- -.+-|+.+++.|..+
T Consensus 119 ~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~ 169 (412)
T PRK13745 119 EFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEW 169 (412)
T ss_pred HHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCE
Confidence 55666787 88888 6653322211 234567788888654
No 215
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=68.37 E-value=10 Score=29.45 Aligned_cols=52 Identities=27% Similarity=0.410 Sum_probs=40.2
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 98 qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
.|...+++|++.+++.|++.|=|+|= -+-..-....+.+++.|+++.+ |+..
T Consensus 13 dg~~~~~e~v~~A~~~Gl~~i~iTDH---~~~~~~~~~~~~~~~~~i~vi~--G~E~ 64 (175)
T PF02811_consen 13 DGKDSPEEYVEQAKEKGLDAIAITDH---NNFAGYPDFYKEAKKKGIKVIP--GVEI 64 (175)
T ss_dssp TSSSSHHHHHHHHHHTTESEEEEEEE---TTTTTHHHHHHHHHHTTSEEEE--EEEE
T ss_pred hhcCCHHHHHHHHHHcCCCEEEEcCC---cccccchHHHHHHHhcCCceEE--eEee
Confidence 34558999999999999999999987 2233355777888889999987 5554
No 216
>PRK09389 (R)-citramalate synthase; Provisional
Probab=68.28 E-value=10 Score=36.51 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=71.5
Q ss_pred HHHHHHHhhcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHH
Q 028948 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~ 110 (201)
.++..++ +| +|.+-+...+|-++-+ +.+.+-++.++++|..|..+- |.+...+++.+.++++.+
T Consensus 78 di~~a~~-~g--~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~--ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 78 DIDAALE-CD--VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG--EDASRADLDFLKELYKAG 152 (488)
T ss_pred HHHHHHh-CC--cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE--eeCCCCCHHHHHHHHHHH
Confidence 3444444 23 6778888888776432 346677889999998766531 344444556777888888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 028948 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 111 k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~ 142 (201)
.+.|-+.|-+.|-.--+.+.+-.++|+.+++.
T Consensus 153 ~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~ 184 (488)
T PRK09389 153 IEAGADRICFCDTVGILTPEKTYELFKRLSEL 184 (488)
T ss_pred HhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999875
No 217
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=68.21 E-value=19 Score=31.04 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=44.4
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCcc-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gt-lfE~al~qg~~~~~eyl~~~k~lGFd~ 117 (201)
.+...-++++..+.+++++|+|++.+.-+..+.+ +..+++|..+..-. +... ++....|++.+.+.|++.
T Consensus 13 ~~~~~l~~~~~~~~~~~~ikvg~~~f~~~G~~~i----~~l~~~~~~i~~D~Kl~Di-----~~t~~~~i~~~~~~gad~ 83 (230)
T PRK00230 13 SKEEALAFLDQLDPAVLFVKVGMELFTAGGPQFV----RELKQRGFKVFLDLKLHDI-----PNTVAKAVRALAKLGVDM 83 (230)
T ss_pred CHHHHHHHHHhcCCcccEEEEcHHHHHhcCHHHH----HHHHhcCCCEEEEeehhhc-----cccHHHHHHHHHHcCCCE
Confidence 5557777899999999999999998876655544 44444443333221 2111 123444555555566665
Q ss_pred EEec
Q 028948 118 IELN 121 (201)
Q Consensus 118 IEIS 121 (201)
|-|.
T Consensus 84 itvH 87 (230)
T PRK00230 84 VNVH 87 (230)
T ss_pred EEEc
Confidence 5554
No 218
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=68.09 E-value=28 Score=31.26 Aligned_cols=56 Identities=21% Similarity=0.452 Sum_probs=36.5
Q ss_pred EEEeeCccccccChhHHHHHHHHHHhCC---c----eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 028948 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHD---V----YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (201)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~g---V----~v~~-GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISd 122 (201)
-+-|.+|=-.|.|.+.+++.+++++++| + .+.| |+++. ++.++..++.++ .|-||-
T Consensus 60 ~i~~~GGEPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~----------~~~~~~l~~~~~-~v~iSl 123 (370)
T PRK13758 60 SFAFQGGEPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLID----------ESWAKFLSENKF-LVGLSM 123 (370)
T ss_pred EEEEECCccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecC----------HHHHHHHHHcCc-eEEEee
Confidence 4568888888887777899999999986 3 2345 66553 123333445565 677763
No 219
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=67.86 E-value=25 Score=28.45 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=67.0
Q ss_pred CccccccccCCCCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHh
Q 028948 2 SGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ 81 (201)
Q Consensus 2 ~~~~~~~~~f~~~~~R~~KPR~~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~ 81 (201)
.|+|..|..= ..+. +.+-...++|+|.=-.+.+. . -|.- .. +.+ .+.+...+.+..+++
T Consensus 2 v~y~~~w~~~-~~~~-~~~~~~~~~thvi~~f~~v~----~-------~~~~---~~--~~~---~~~~~~~~~i~~l~~ 60 (210)
T cd00598 2 ICYYDGWSSG-RGPD-PTDIPLSLCTHIIYAFAEIS----S-------DGSL---NL--FGD---KSEEPLKGALEELAS 60 (210)
T ss_pred EEEEcccccc-CCCC-hhhCCcccCCEEEEeeEEEC----C-------CCCE---ec--ccC---cccHHHHHHHHHHHH
Confidence 4667777552 2222 45666668888775544222 0 0000 00 111 123346667777777
Q ss_pred C--CceecC--ccHHHHH---HHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHHHHHC
Q 028948 82 H--DVYVST--GDWAEHL---IRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRLVKSA 142 (201)
Q Consensus 82 ~--gV~v~~--GtlfE~a---l~qg~~----~~~eyl~~~k~lGFd~IEISdGti~i~----~~~r~~lI~~~~~~ 142 (201)
. |+++.+ |||-... +..+++ -++...+.+++.|||.|.|.=-..... .+....+++..++.
T Consensus 61 ~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 61 KKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSA 136 (210)
T ss_pred hCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHH
Confidence 6 887776 6543221 122211 467788888999999999976555444 35666777777664
No 220
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=67.66 E-value=47 Score=30.21 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=66.9
Q ss_pred hHHHHHHHhhcc--cccEEEeeCccccccChhHHHHHHHHHHhC----CceecC---ccHHHHHHHhCCchHHHHHHHHH
Q 028948 41 NVLEDIFESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST---GDWAEHLIRNGPSAFKEYVEDCK 111 (201)
Q Consensus 41 ~~l~DlLe~ag~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~----gV~v~~---GtlfE~al~qg~~~~~eyl~~~k 111 (201)
..++.+++.... -|.-+-|.+|--.+.+.+.|.+.++.+++. +|.+.+ +++-.. --++.++..+
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~r-------it~el~~~L~ 217 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQR-------ITDELCELLA 217 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchh-------cCHHHHHHHH
Confidence 455555554432 366788999998888877788888887774 455543 333211 1246777778
Q ss_pred HcCCCEEEec--CCcccCChhHHHHHHHHHHHCCCeE
Q 028948 112 QVGFDTIELN--VGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 112 ~lGFd~IEIS--dGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+.|+..+=+| ++.-++.++. .+.|+++++.|+.+
T Consensus 218 ~~~~~~~~vsh~nh~~Ei~~~~-~~ai~~L~~aGi~v 253 (331)
T TIGR00238 218 SFELQLMLVTHINHCNEITEEF-AEAMKKLRTVNVTL 253 (331)
T ss_pred hcCCcEEEEccCCChHhCCHHH-HHHHHHHHHcCCEE
Confidence 8899988888 5555665554 58899999999988
No 221
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=67.60 E-value=55 Score=30.01 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=17.3
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 107 l~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
++.+.+.|.+.|-|....-+.+ .-.+.|+.+++.|++|
T Consensus 93 l~~a~~~gvd~iri~~~~~e~d--~~~~~i~~ak~~G~~v 130 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEAD--VSEQHIGMARELGMDT 130 (333)
T ss_pred HHHHHHCCCCEEEEEeccchHH--HHHHHHHHHHHcCCeE
Confidence 4445555555555544322221 2234555555555544
No 222
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=67.59 E-value=22 Score=29.62 Aligned_cols=118 Identities=22% Similarity=0.285 Sum_probs=67.1
Q ss_pred HHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC----ccH--HHHHHHhCCchHHHHHHHHHHcCCC
Q 028948 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDW--AEHLIRNGPSAFKEYVEDCKQVGFD 116 (201)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~----Gtl--fE~al~qg~~~~~eyl~~~k~lGFd 116 (201)
.+.+.+ +| .|++-+-. ....+.+++-++.++++|+.+.. .++ .|... +.++..+..+.+.||+
T Consensus 73 ~~~~~~-~g--ad~vtvh~----e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~----~~~~~v~~m~~e~G~~ 141 (215)
T PRK13813 73 CEAVFE-AG--AWGIIVHG----FTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQ----PHADKLAKLAQEAGAF 141 (215)
T ss_pred HHHHHh-CC--CCEEEEcC----cCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHH----HHHHHHHHHHHHhCCC
Confidence 355554 33 45554433 33345689999999999987632 221 12111 2678888999999999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHCCCe-EccccccccC----CCCcccccccccccEEEecccCcCeeccccCC
Q 028948 117 TIELNVGSLEIPEETLLRYVRLVKSAGLK-AKPKFAVMFN----KSDIPSDRDRAFGAYVARAPRSTDKLFLASNP 187 (201)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~Gf~-v~pE~g~k~~----~~dl~ag~~~a~g~~Vi~E~Res~~v~~~~~~ 187 (201)
...++... -++.+-+++.....+. |-| |+... ..-+++|++ ++ +-+|. ++-+.||
T Consensus 142 g~~~~~~~-----~~~i~~l~~~~~~~~~ivdg--GI~~~g~~~~~~~~aGad-----~i-V~Gr~---I~~~~d~ 201 (215)
T PRK13813 142 GVVAPATR-----PERVRYIRSRLGDELKIISP--GIGAQGGKAADAIKAGAD-----YV-IVGRS---IYNAADP 201 (215)
T ss_pred eEEECCCc-----chhHHHHHHhcCCCcEEEeC--CcCCCCCCHHHHHHcCCC-----EE-EECcc---cCCCCCH
Confidence 88766532 1344445444444433 445 44432 345666777 54 44653 5555565
No 223
>PLN02960 alpha-amylase
Probab=67.50 E-value=13 Score=38.76 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--------------------CChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLE--------------------IPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~--------------------i~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
++.+.++++||+++||++-=+-. =+.++..++|+.++++|++|+-.+=-..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH 490 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSY 490 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 45688999999999999743210 0357788999999999999966654333
No 224
>PRK14706 glycogen branching enzyme; Provisional
Probab=67.46 E-value=12 Score=37.48 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc---------------cC-----ChhHHHHHHHHHHHCCCeEccccccc
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSL---------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti---------------~i-----~~~~r~~lI~~~~~~Gf~v~pE~g~k 153 (201)
.++.++++|+||+++||++-=.- .+ +.++..++|+.+.++|++|+-++=..
T Consensus 170 ~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~n 240 (639)
T PRK14706 170 AHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPG 240 (639)
T ss_pred HHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 34446788999999999864211 11 24788999999999999996654443
No 225
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=66.53 E-value=18 Score=31.18 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC-CCeEcccccc
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAV 152 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~-Gf~v~pE~g~ 152 (201)
+++..+.+.+.|.|+|+|+ ||..+..+.-.++++.+|+. .+-+.-|-|-
T Consensus 13 ~~~ia~~v~~~gtDaI~VG-GS~gvt~~~~~~~v~~ik~~~~lPvilfp~~ 62 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVG-GSLGIVESNLDQTVKKIKKITNLPVILFPGN 62 (205)
T ss_pred HHHHHHHHHhcCCCEEEEc-CcCCCCHHHHHHHHHHHHhhcCCCEEEECCC
Confidence 4555668999999999997 66778999999999999984 4666555443
No 226
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=66.46 E-value=81 Score=27.74 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=61.3
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC-CceecCcc----HHHHHHHh--CC------------ch
Q 028948 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHLIRN--GP------------SA 102 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~Gt----lfE~al~q--g~------------~~ 102 (201)
..+.+++.-+++|| +|.+...+-+++.+++.+...++. +++++-.| -+|.|+.. |. ++
T Consensus 31 ~A~~~~~~GAdiID---IG~~~~~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e~ 107 (252)
T cd00740 31 VARQQVEGGAQILD---LNVDYGGLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEER 107 (252)
T ss_pred HHHHHHHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCccc
Confidence 34445555666666 588776555666677777778776 99998764 67888874 21 23
Q ss_pred HHHHHHHHHHcCCCEEEecCCc--ccCChhHHHHHHH
Q 028948 103 FKEYVEDCKQVGFDTIELNVGS--LEIPEETLLRYVR 137 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGt--i~i~~~~r~~lI~ 137 (201)
+++.++.+++.|...|=+...- +..+.+.|.++.+
T Consensus 108 ~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~ 144 (252)
T cd00740 108 FLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAE 144 (252)
T ss_pred cHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHH
Confidence 6778889999999998877521 3334444444433
No 227
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=66.19 E-value=9.2 Score=34.36 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc--cCChhHHH-HHHHHHHHCCCeE
Q 028948 101 SAFKEYVEDCKQVGFDTIELNVGSL--EIPEETLL-RYVRLVKSAGLKA 146 (201)
Q Consensus 101 ~~~~eyl~~~k~lGFd~IEISdGti--~i~~~~r~-~lI~~~~~~Gf~v 146 (201)
-.+++|+..||++||..|||-|.-- +|....-. ++-..+.+.|+..
T Consensus 17 l~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~I 65 (272)
T COG4130 17 LSVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTI 65 (272)
T ss_pred CCHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEE
Confidence 3699999999999999999977533 33333222 2234556778876
No 228
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=66.13 E-value=16 Score=32.86 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=25.2
Q ss_pred ccCChhHHHHHHHHHHHCCCeEccccccc
Q 028948 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 125 i~i~~~~r~~lI~~~~~~Gf~v~pE~g~k 153 (201)
--.+.++..++++.|+++|..|.||+-.-
T Consensus 77 ~~YT~~di~eiv~yA~~rgI~vIPEID~P 105 (326)
T cd06564 77 GYYTKEEFKELIAYAKDRGVNIIPEIDSP 105 (326)
T ss_pred CcccHHHHHHHHHHHHHcCCeEeccCCCc
Confidence 35789999999999999999999998643
No 229
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=66.10 E-value=57 Score=26.43 Aligned_cols=97 Identities=20% Similarity=0.320 Sum_probs=59.2
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccC-----hhHHHHHHHHH-HhCCceecCccHHHHHHHhCCchHHHHHHHHH
Q 028948 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMP-----KPFIEEVVKRA-HQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCK 111 (201)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p-----~~~L~eKI~l~-~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k 111 (201)
.+..+.+.++.+-+. +|.+-|+..--.+.+ .+.+++..+.+ +..+|.+. .. ...+|++.|.
T Consensus 10 d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~---------~~---d~~~~~~~~~ 77 (211)
T cd00429 10 DFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLM---------VE---NPERYIEAFA 77 (211)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEee---------eC---CHHHHHHHHH
Confidence 444677777777777 899988543322222 12333333333 11111111 12 2356899999
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccc
Q 028948 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (201)
Q Consensus 112 ~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g 151 (201)
+.|.|.|=|-++.. ++..+.++.+++.|+.+-..+.
T Consensus 78 ~~g~dgv~vh~~~~----~~~~~~~~~~~~~~~~~g~~~~ 113 (211)
T cd00429 78 KAGADIITFHAEAT----DHLHRTIQLIKELGMKAGVALN 113 (211)
T ss_pred HcCCCEEEECccch----hhHHHHHHHHHHCCCeEEEEec
Confidence 99999998888754 4556779999999988755443
No 230
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.09 E-value=10 Score=34.36 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=41.2
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHh-hcccc--cEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHH
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFES-MGQFV--DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHL 95 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~-ag~yI--D~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~a 95 (201)
.++-+..|=.+ . ++..++.+++. +-++| |.-|.|+ +++ .++..++|+.||+.+.++.+.+..
T Consensus 236 ~~ipia~~E~~--~-~~~~~~~~i~~~~~d~i~~~~~~~GG----it~---~~~ia~~A~~~gi~~~~h~~~~~~ 300 (355)
T cd03321 236 LRTPVQMGENW--L-GPEEMFKALSAGACDLVMPDLMKIGG----VTG---WLRASALAEQAGIPMSSHLFQEIS 300 (355)
T ss_pred cCCCEEEcCCC--c-CHHHHHHHHHhCCCCeEecCHhhhCC----HHH---HHHHHHHHHHcCCeecccchHHHH
Confidence 34555555543 4 77788888875 33332 4456665 332 677899999999999998666654
No 231
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=66.09 E-value=5.3 Score=34.26 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 028948 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~eyl~~~k~lGFd~IEIS 121 (201)
..-.+.++.++++||.+.|| |--|+.-.. ++|++.|-+=
T Consensus 88 ~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~-------------~~G~~~vK~F 128 (196)
T PF01081_consen 88 GFDPEVIEYAREYGIPYIPGVMTPTEIMQAL-------------EAGADIVKLF 128 (196)
T ss_dssp S--HHHHHHHHHHTSEEEEEESSHHHHHHHH-------------HTT-SEEEET
T ss_pred CCCHHHHHHHHHcCCcccCCcCCHHHHHHHH-------------HCCCCEEEEe
Confidence 45678889999999999998 788886443 5788888763
No 232
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=65.82 E-value=61 Score=30.96 Aligned_cols=90 Identities=11% Similarity=0.173 Sum_probs=54.2
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCC-ceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----
Q 028948 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL----- 125 (201)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~G--tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti----- 125 (201)
+..+-|.-.+..+ +++.+++..+...+.| +.+.-+ +=.... .. -++.++.+++.|+..|.+.--|.
T Consensus 240 v~~~~~~Dd~f~~-~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~----d~ell~~l~~aG~~~v~iGiES~~~~~L 313 (497)
T TIGR02026 240 VGFFILADEEPTI-NRKKFQEFCEEIIARNPISVTWGINTRVTDI-VR----DADILHLYRRAGLVHISLGTEAAAQATL 313 (497)
T ss_pred CCEEEEEeccccc-CHHHHHHHHHHHHhcCCCCeEEEEecccccc-cC----CHHHHHHHHHhCCcEEEEccccCCHHHH
Confidence 4556666555443 4445666666666655 332211 111111 11 15788888999999988844433
Q ss_pred -----cCChhHHHHHHHHHHHCCCeEccc
Q 028948 126 -----EIPEETLLRYVRLVKSAGLKAKPK 149 (201)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~v~pE 149 (201)
..+.++-.+.|+.+++.|+.+...
T Consensus 314 ~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 314 DHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred HHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 245567778899999999987443
No 233
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=65.81 E-value=12 Score=31.28 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC---------C---hhHHHHHHHHHHHCCCeEcccc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEI---------P---EETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i---------~---~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
..+++++..+++||++|-|--+--.+ + -+...++|+.++++|++|...+
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~ 82 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDL 82 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 67899999999999999876553111 1 1445678999999999996544
No 234
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.78 E-value=8.4 Score=33.64 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC--CC
Q 028948 69 KPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GL 144 (201)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~--Gf 144 (201)
+..-.+.++.++++||.+.|| |--|+.-. .++|++.|-+==.. .+. ..+|+-++.- +.
T Consensus 98 P~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A-------------~~~Ga~~vKlFPA~-~~G----~~~ikal~~p~p~i 159 (222)
T PRK07114 98 PLFNPDIAKVCNRRKVPYSPGCGSLSEIGYA-------------EELGCEIVKLFPGS-VYG----PGFVKAIKGPMPWT 159 (222)
T ss_pred CCCCHHHHHHHHHcCCCEeCCCCCHHHHHHH-------------HHCCCCEEEECccc-ccC----HHHHHHHhccCCCC
Confidence 345677888999999999998 78887644 46899999887533 333 2344443322 23
Q ss_pred eEccccccc
Q 028948 145 KAKPKFAVM 153 (201)
Q Consensus 145 ~v~pE~g~k 153 (201)
+..|-=|+.
T Consensus 160 ~~~ptGGV~ 168 (222)
T PRK07114 160 KIMPTGGVE 168 (222)
T ss_pred eEEeCCCCC
Confidence 444444554
No 235
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=65.77 E-value=64 Score=29.76 Aligned_cols=97 Identities=13% Similarity=0.174 Sum_probs=62.9
Q ss_pred chhHHHHHHHhhc-ccccEEEeeCccccc-cChhHHHHHHHHHHhC--CceecCccHHHHHHHhCCchHHHHHHHHHHcC
Q 028948 39 SHNVLEDIFESMG-QFVDGLKFSGGSHSL-MPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (201)
Q Consensus 39 g~~~l~DlLe~ag-~yID~lKfg~GTs~l-~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lG 114 (201)
.+.++.+....+. .=+.-+-|-.|-... .+-+.+.+.++..++. +|.+.+|.+ . .+-++.+|+.|
T Consensus 105 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~l----------t-~e~l~~Lk~aG 173 (371)
T PRK09240 105 DEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQPL----------S-EEEYAELVELG 173 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCCC----------C-HHHHHHHHHcC
Confidence 4444444443332 226666665565444 4556777878777765 233333321 2 33347899999
Q ss_pred CCEEEecCCccc------C-------ChhHHHHHHHHHHHCCCe-E
Q 028948 115 FDTIELNVGSLE------I-------PEETLLRYVRLVKSAGLK-A 146 (201)
Q Consensus 115 Fd~IEISdGti~------i-------~~~~r~~lI~~~~~~Gf~-v 146 (201)
++.+-++--|.+ | +.++|++.|+++++.||+ |
T Consensus 174 v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 219 (371)
T PRK09240 174 LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKI 219 (371)
T ss_pred CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 999998877752 4 568999999999999996 5
No 236
>PRK06846 putative deaminase; Validated
Probab=65.64 E-value=30 Score=31.75 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCCE-EEecCCcc--cCChhHHHHHHHHHHHCC
Q 028948 70 PFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDT-IELNVGSL--EIPEETLLRYVRLVKSAG 143 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~eyl~~~k~lGFd~-IEISdGti--~i~~~~r~~lI~~~~~~G 143 (201)
+.+++-.+++++||+++.. . +.-|. + ..+++.++.++++|+.. +-++=... .++.++..++++++++.|
T Consensus 206 ~~l~~~~~lA~~~g~~v~~Hv~e~~~~~---~--~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g 280 (410)
T PRK06846 206 KSLDTMFQIAVDFNKGVDIHLHDTGPLG---V--ATIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQG 280 (410)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCChh---H--HHHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcC
Confidence 4588889999999987764 2 22121 1 14566777888888732 44444432 468899989999999999
Q ss_pred CeEcc
Q 028948 144 LKAKP 148 (201)
Q Consensus 144 f~v~p 148 (201)
..|.+
T Consensus 281 ~~v~~ 285 (410)
T PRK06846 281 ISITS 285 (410)
T ss_pred CeEEE
Confidence 88854
No 237
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=65.64 E-value=14 Score=38.25 Aligned_cols=53 Identities=17% Similarity=0.121 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------------------ChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------------------PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i--------------------~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
.+.+-+.++++|||++|.+|-=+-.. +.++..++++.++++|++|.-.+=...
T Consensus 17 ~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH 89 (825)
T TIGR02401 17 DAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNH 89 (825)
T ss_pred HHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 35566778889999999887643321 378899999999999999965544433
No 238
>PRK09234 fbiC FO synthase; Reviewed
Probab=65.60 E-value=35 Score=35.40 Aligned_cols=90 Identities=21% Similarity=0.350 Sum_probs=54.6
Q ss_pred EeeCccccccChhHHHHHHHHHHhC--CceecCccHHHHH---HHhCCchHHHHHHHHHHcCCCEE-----EecCCc---
Q 028948 58 KFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHL---IRNGPSAFKEYVEDCKQVGFDTI-----ELNVGS--- 124 (201)
Q Consensus 58 Kfg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~a---l~qg~~~~~eyl~~~k~lGFd~I-----EISdGt--- 124 (201)
-+-.|...-++.+.+.+.++..|+. +|.+..=+=.|+. ..-| -..+++++.+|+.|.+.+ ||-+--
T Consensus 578 ~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~G-l~~~e~l~~LkeAGLds~pgt~aeil~d~vr~ 656 (843)
T PRK09234 578 CMQGGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLG-LSIREWLTALREAGLDTIPGTAAEILDDEVRW 656 (843)
T ss_pred EEecCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcC-CCHHHHHHHHHHhCcCccCCCchhhCCHHHHh
Confidence 3334555445555566667767665 4555432334444 2222 257888888888888877 222210
Q ss_pred ----ccCChhHHHHHHHHHHHCCCeEcc
Q 028948 125 ----LEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 125 ----i~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
-.++.++|++.|+.|++.|+++..
T Consensus 657 ~i~p~k~~~~~wle~i~~Ah~lGi~~~s 684 (843)
T PRK09234 657 VLTKGKLPTAEWIEVVTTAHEVGLRSSS 684 (843)
T ss_pred hcCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 135778888888888888888844
No 239
>PLN00196 alpha-amylase; Provisional
Probab=65.50 E-value=15 Score=34.86 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCEEEecC--------Cc-----ccCC------hhHHHHHHHHHHHCCCeEccccccccCC
Q 028948 103 FKEYVEDCKQVGFDTIELNV--------GS-----LEIP------EETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISd--------Gt-----i~i~------~~~r~~lI~~~~~~Gf~v~pE~g~k~~~ 156 (201)
+.+=+.++++|||++|-|+- |. .++. .++..++|+.++++|++|.-.+=.....
T Consensus 46 i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 46 LMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 44557788899999998873 21 3353 2689999999999999996655544443
No 240
>PRK03705 glycogen debranching enzyme; Provisional
Probab=65.40 E-value=11 Score=37.68 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCEEEecCCccc----------------------------C------ChhHHHHHHHHHHHCCCeEccccc
Q 028948 106 YVEDCKQVGFDTIELNVGSLE----------------------------I------PEETLLRYVRLVKSAGLKAKPKFA 151 (201)
Q Consensus 106 yl~~~k~lGFd~IEISdGti~----------------------------i------~~~~r~~lI~~~~~~Gf~v~pE~g 151 (201)
.|+++|+||+++||++==+-. . +.++..++|+.++++|++|.-.+=
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 478999999999998422110 0 125888999999999999965544
Q ss_pred ccc
Q 028948 152 VMF 154 (201)
Q Consensus 152 ~k~ 154 (201)
...
T Consensus 264 ~NH 266 (658)
T PRK03705 264 FNH 266 (658)
T ss_pred ccC
Confidence 433
No 241
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=64.96 E-value=33 Score=30.14 Aligned_cols=97 Identities=19% Similarity=0.128 Sum_probs=59.4
Q ss_pred ChhHHHHHHHHHHhCCc-eecCccHHHHHHHhCCchHHHHHH---HHHHcCCCEEEecCCc-------------ccCChh
Q 028948 68 PKPFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVE---DCKQVGFDTIELNVGS-------------LEIPEE 130 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV-~v~~GtlfE~al~qg~~~~~eyl~---~~k~lGFd~IEISdGt-------------i~i~~~ 130 (201)
|.+++.+-+..+++... -+.-|+ +..++|++ .+.+ +++.|||+-|+ +--.++
T Consensus 53 ~~~~i~~e~~~~~~~~~vivnv~~----------~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~ 121 (231)
T TIGR00736 53 FNSYIIEQIKKAESRALVSVNVRF----------VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKE 121 (231)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEec----------CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHH
Confidence 45778887877765443 222232 12222222 2323 79999999887 334777
Q ss_pred HHHHHHHHHHHCCCeEccccccccCCCC--------cccccccccccEEEecccCcCe
Q 028948 131 TLLRYVRLVKSAGLKAKPKFAVMFNKSD--------IPSDRDRAFGAYVARAPRSTDK 180 (201)
Q Consensus 131 ~r~~lI~~~~~~Gf~v~pE~g~k~~~~d--------l~ag~~~a~g~~Vi~E~Res~~ 180 (201)
...++++.+++.+..|..-++......+ .++|++ .+.+.++-+|.
T Consensus 122 ~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad-----~i~Vd~~~~g~ 174 (231)
T TIGR00736 122 LLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFD-----GIHVDAMYPGK 174 (231)
T ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCC-----EEEEeeCCCCC
Confidence 7889999999776666544444333223 345555 88888877764
No 242
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=64.92 E-value=27 Score=34.03 Aligned_cols=111 Identities=19% Similarity=0.285 Sum_probs=76.6
Q ss_pred CCCCCcchhHHHHHHHhhcccccEEEeeCccc---cccChhHHHHHHHHHHhCCceec----------Cc--cHHHHHHH
Q 028948 33 HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH---SLMPKPFIEEVVKRAHQHDVYVS----------TG--DWAEHLIR 97 (201)
Q Consensus 33 G~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs---~l~p~~~L~eKI~l~~~~gV~v~----------~G--tlfE~al~ 97 (201)
|.+-+ |-+.++.+-=-.=+|||-+=+=.|++ ++.++ --+.|+-+|++||+|+ .| .|+-.+|.
T Consensus 90 g~pS~-Gg~eF~aytFdyWQY~D~mVyWgGSsGEGii~tP--SaDVIDaaHrNGVPvlGt~Ffppk~ygg~~ewv~~mLk 166 (553)
T COG4724 90 GHPSV-GGEEFKAYTFDYWQYLDSMVYWGGSSGEGIIPTP--SADVIDAAHRNGVPVLGTLFFPPKNYGGDQEWVAEMLK 166 (553)
T ss_pred CCCCc-CcceeeeccccHHHhhhheeeecCcCCCccccCC--chhhhhhhhcCCCceeeeeecChhhcCchHHHHHHHHh
Confidence 44444 55666655555568999887766665 23333 4578999999999874 24 39999999
Q ss_pred hCCc----hHHHHHHHHHHcCCCEEEecCCcccCC---hhHHHHHHHHHHHCCCeE
Q 028948 98 NGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP---EETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 98 qg~~----~~~eyl~~~k~lGFd~IEISdGti~i~---~~~r~~lI~~~~~~Gf~v 146 (201)
|+.+ ..++.++.+|-.|||.-=|+.-|.-.. .+....++-..++.--++
T Consensus 167 ~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M~~f~ly~ke~~~~~ 222 (553)
T COG4724 167 QDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKMRQFMLYSKEYAAKV 222 (553)
T ss_pred cCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHHHHHHHHHHhccccc
Confidence 9642 268899999999999988876555332 234447788888664444
No 243
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=64.86 E-value=87 Score=26.58 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhCCceecCc-c----H----H---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH----
Q 028948 70 PFIEEVVKRAHQHDVYVSTG-D----W----A---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET---- 131 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G-t----l----f---E~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~--i~~~~---- 131 (201)
..+++.-++++++|+.+... . + + +......-+.+++.++.|+.+|.+.|=+.-+... -+.++
T Consensus 47 ~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~ 126 (275)
T PRK09856 47 GGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGR 126 (275)
T ss_pred hHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHH
Confidence 35788888999999987541 1 1 1 1111111126888999999999999988654321 12222
Q ss_pred ----HHHHHHHHHHCCCeEcccc
Q 028948 132 ----LLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 132 ----r~~lI~~~~~~Gf~v~pE~ 150 (201)
..++.+.|++.|+++-.|-
T Consensus 127 ~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 127 LAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHcCCEEEEec
Confidence 4577888899999886663
No 244
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=64.75 E-value=13 Score=37.53 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCEEEecCCcc-------------------cC-------------ChhHHHHHHHHHHHCCCeEccccccc
Q 028948 106 YVEDCKQVGFDTIELNVGSL-------------------EI-------------PEETLLRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 106 yl~~~k~lGFd~IEISdGti-------------------~i-------------~~~~r~~lI~~~~~~Gf~v~pE~g~k 153 (201)
-|+++|+||+++|+++==+- .+ +.++..++|+.++++|++|.-.+=..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~N 268 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYN 268 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 37788999999999864221 11 35789999999999999996555444
Q ss_pred c
Q 028948 154 F 154 (201)
Q Consensus 154 ~ 154 (201)
.
T Consensus 269 H 269 (688)
T TIGR02100 269 H 269 (688)
T ss_pred C
Confidence 3
No 245
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=64.35 E-value=8.4 Score=30.43 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=59.3
Q ss_pred EEEeeCccccccChhHHHHHHHHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH
Q 028948 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL 133 (201)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~-GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~ 133 (201)
+.|-.++.+ +..+ | .++++++|| .+.- |-+.+.|+.+- . ..+.++||+++=++|.+-+.+.+...
T Consensus 90 i~K~~~saf--~~t~-L---~~~L~~~gi~~vil~G~~t~~CV~~T--a-----~~a~~~g~~v~v~~Da~~~~~~~~h~ 156 (174)
T PF00857_consen 90 IEKNRYSAF--FGTD-L---DEILRKRGIDTVILCGVATDVCVLAT--A-----RDAFDRGYRVIVVEDACASYSPEAHE 156 (174)
T ss_dssp EEESSSSTT--TTSS-H---HHHHHHTTESEEEEEEESTTTHHHHH--H-----HHHHHTT-EEEEEEEEEEBSSHHHHH
T ss_pred EEeeccccc--cccc-c---cccccccccceEEEcccccCcEEehh--H-----HHHHHCCCEEEEEChhhcCCCHHHHH
Confidence 458766554 4433 3 345778999 4444 77999998774 3 44578899999999999999999999
Q ss_pred HHHHHHHHCCCeEc
Q 028948 134 RYVRLVKSAGLKAK 147 (201)
Q Consensus 134 ~lI~~~~~~Gf~v~ 147 (201)
..++.++..|-.|.
T Consensus 157 ~~l~~l~~~~~~v~ 170 (174)
T PF00857_consen 157 AALEELRKRGAEVI 170 (174)
T ss_dssp HHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCEEE
Confidence 99999998887764
No 246
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=64.26 E-value=24 Score=29.93 Aligned_cols=104 Identities=20% Similarity=0.104 Sum_probs=64.3
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceec--------------CccHHHHHHHhCCchHH
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--------------TGDWAEHLIRNGPSAFK 104 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~--------------~GtlfE~al~qg~~~~~ 104 (201)
....++++++. -+|.+ ..|+..+.+.+.+++..+.+++..|.++ +=+|.+. ......
T Consensus 82 s~~d~~~~l~~---G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~----~~~~~~ 152 (243)
T cd04731 82 SLEDARRLLRA---GADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKP----TGLDAV 152 (243)
T ss_pred CHHHHHHHHHc---CCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCcee----cCCCHH
Confidence 44455555553 36654 5567888888888888887765445433 2134433 123567
Q ss_pred HHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHC-CCeEcccccccc
Q 028948 105 EYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSA-GLKAKPKFAVMF 154 (201)
Q Consensus 105 eyl~~~k~lGFd~IEISdGt----i~i~~~~r~~lI~~~~~~-Gf~v~pE~g~k~ 154 (201)
++.+.+.+.|++.|.+++=+ ..-+ ..++++++++. ...|...=|+..
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~~~~~pvia~GGi~~ 204 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTKKGY---DLELIRAVSSAVNIPVIASGGAGK 204 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCCCCC---CHHHHHHHHhhCCCCEEEeCCCCC
Confidence 88899999999999996522 2222 24666666654 566666555553
No 247
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.20 E-value=7.9 Score=33.87 Aligned_cols=75 Identities=23% Similarity=0.203 Sum_probs=43.5
Q ss_pred EEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc---C-ChhHH
Q 028948 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE---I-PEETL 132 (201)
Q Consensus 57 lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~---i-~~~~r 132 (201)
+|=|--++-+|+++.|++.++++|+||..+-. .-. -=.+-+.-++++|.|.|-|-.-.-. = .-.-|
T Consensus 154 iKDGkslFdfm~~e~l~eFvd~Ah~hGL~~Al--------AGs--~~~ehlp~l~eig~DivGvRgaaC~~GDRn~g~I~ 223 (235)
T COG1891 154 IKDGKSLFDFMDEEELEEFVDLAHEHGLEVAL--------AGS--LKFEHLPILKEIGPDIVGVRGAACEGGDRNTGAIR 223 (235)
T ss_pred cccchhHHhhhcHHHHHHHHHHHHHcchHHHh--------ccc--cccccchHHHHhCCCeeeecchhccCCCcccchHH
Confidence 45555566677888888888888888865543 221 1123345567888888766421111 1 11334
Q ss_pred HHHHHHHHH
Q 028948 133 LRYVRLVKS 141 (201)
Q Consensus 133 ~~lI~~~~~ 141 (201)
.+++++.++
T Consensus 224 relV~kL~e 232 (235)
T COG1891 224 RELVRKLKE 232 (235)
T ss_pred HHHHHHHHH
Confidence 566666654
No 248
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=63.96 E-value=29 Score=30.98 Aligned_cols=71 Identities=28% Similarity=0.335 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC--hhH----HH---HHHHH
Q 028948 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP--EET----LL---RYVRL 138 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~--~~~----r~---~lI~~ 138 (201)
..+.|++.|+.+|+.||.|+. | =+|+ .+-++.++++|-|+||+-.|...-. .++ .. ..-+.
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSL---F-----iDP~--~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~ 177 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGIEVSL---F-----IDAD--KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVH 177 (237)
T ss_pred CHHHHHHHHHHHHHCCCEEEE---E-----eCCC--HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHH
Confidence 456799999999999999984 1 2222 4567788999999999999887432 212 22 23345
Q ss_pred HHHCCCeEcc
Q 028948 139 VKSAGLKAKP 148 (201)
Q Consensus 139 ~~~~Gf~v~p 148 (201)
+++.|+.|-.
T Consensus 178 A~~lGL~VnA 187 (237)
T TIGR00559 178 AHSLGLKVNA 187 (237)
T ss_pred HHHcCCEEec
Confidence 6777888844
No 249
>PLN02361 alpha-amylase
Probab=63.75 E-value=18 Score=34.26 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-------------C-----ChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLE-------------I-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~-------------i-----~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
.+.+=++++++|||++|.|+--+-. + +.++..++|+.++++|++|...+=+..
T Consensus 30 ~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 30 NLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 3555577788888888887653321 1 346899999999999999966655544
No 250
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=63.71 E-value=12 Score=31.42 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHH-CCCeEcccccc-ccCCCCcccccccccccEEEec
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKS-AGLKAKPKFAV-MFNKSDIPSDRDRAFGAYVARA 174 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~-~~r~~lI~~~~~-~Gf~v~pE~g~-k~~~~dl~ag~~~a~g~~Vi~E 174 (201)
.+++++|++.|-|.|-+......-|. ++..++++.+++ .|+.+.+++.- .....-.++|.+ |+.+.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d-----~i~~~ 146 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFD-----FIGTT 146 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCC-----EEEcC
Confidence 46789999999999988654443332 666789999999 88888766531 222233455666 77654
No 251
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=63.65 E-value=24 Score=29.41 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC---
Q 028948 68 PKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--- 142 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~--- 142 (201)
+.+.+++-++.++.+|+.+.. -||-| ++.+.++|++.|=++.-.......+ .++++++++.
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~v~v~~~~e-------------~~~~~~~g~~~i~~t~~~~~~~~~~-~~~~~~l~~~~~~ 171 (217)
T cd00331 106 DDEQLKELYELARELGMEVLVEVHDEEE-------------LERALALGAKIIGINNRDLKTFEVD-LNTTERLAPLIPK 171 (217)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEECCHHH-------------HHHHHHcCCCEEEEeCCCccccCcC-HHHHHHHHHhCCC
Confidence 335678888888888886543 25665 4455667888886663222222222 2555555543
Q ss_pred CCeEccccccccCC---CCcccccc
Q 028948 143 GLKAKPKFAVMFNK---SDIPSDRD 164 (201)
Q Consensus 143 Gf~v~pE~g~k~~~---~dl~ag~~ 164 (201)
+..+..+.|+...+ .-+.+|++
T Consensus 172 ~~pvia~gGI~s~edi~~~~~~Ga~ 196 (217)
T cd00331 172 DVILVSESGISTPEDVKRLAEAGAD 196 (217)
T ss_pred CCEEEEEcCCCCHHHHHHHHHcCCC
Confidence 67888899986432 33555666
No 252
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=63.64 E-value=71 Score=26.30 Aligned_cols=104 Identities=23% Similarity=0.308 Sum_probs=61.5
Q ss_pred ecCCCCCCcchhHHHHHHHhhccc-ccEEEeeCcccccc-----ChhHHHHHHHHHH-hCCceecCccHHHHHHHhCCch
Q 028948 30 RSPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLM-----PKPFIEEVVKRAH-QHDVYVSTGDWAEHLIRNGPSA 102 (201)
Q Consensus 30 ~DkG~s~~~g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~-----p~~~L~eKI~l~~-~~gV~v~~GtlfE~al~qg~~~ 102 (201)
+.|++.-. .+..+.+.++.+-+. +|.+-|+----.+. ..+.+++.-+.+. ..+|.+.. + .
T Consensus 6 ~~~s~~~~-~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v----------~--d 72 (220)
T PRK05581 6 IAPSILSA-DFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMV----------E--N 72 (220)
T ss_pred EEcchhcC-CHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeee----------C--C
Confidence 55555444 445566666665554 88888843111111 1223443333332 22222221 1 3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
..+|++.|.+.|.|.|=|-++. .++..+.++.+++.|+++-.-+
T Consensus 73 ~~~~i~~~~~~g~d~v~vh~~~----~~~~~~~~~~~~~~~~~~g~~~ 116 (220)
T PRK05581 73 PDRYVPDFAKAGADIITFHVEA----SEHIHRLLQLIKSAGIKAGLVL 116 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeecc----chhHHHHHHHHHHcCCEEEEEE
Confidence 5678889999999999888874 3566778999999999864433
No 253
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=63.51 E-value=11 Score=30.46 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=46.5
Q ss_pred CCCCceeEec-CCCCCCcchhHHHHHHHhhcccccEEEeeCccc----cccChhHHHHHHHHHHhCCceecC-c--cHHH
Q 028948 22 RRFGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST-G--DWAE 93 (201)
Q Consensus 22 R~~GlTmV~D-kG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs----~l~p~~~L~eKI~l~~~~gV~v~~-G--tlfE 93 (201)
|..|....+| -|. +...++.+... -+|+||+...-. .-.....++..++++|++|+.+.- | +
T Consensus 144 ~~~G~~i~ld~~g~----~~~~~~~l~~l---~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~--- 213 (236)
T PF00563_consen 144 RSLGFRIALDDFGS----GSSSLEYLASL---PPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAEGVES--- 213 (236)
T ss_dssp HHCT-EEEEEEETS----TCGCHHHHHHH---CGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEECE-S---
T ss_pred HhcCceeEeeeccC----Ccchhhhhhhc---ccccceeecccccccchhhHHHHHHHHHHHhhccccccceeecCC---
Confidence 3456666665 443 22344433222 378999997654 223467788899999999998775 5 2
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEE
Q 028948 94 HLIRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 94 ~al~qg~~~~~eyl~~~k~lGFd~I 118 (201)
++-++.++++|++.+
T Consensus 214 ----------~~~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 214 ----------EEQLELLKELGVDYI 228 (236)
T ss_dssp ----------HHHHHHHHHTTESEE
T ss_pred ----------HHHHHHHHHcCCCEE
Confidence 233445567777765
No 254
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=63.42 E-value=64 Score=28.41 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=54.8
Q ss_pred hHHHHHHHhhcccccEEEeeCcccc---------ccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHH
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHS---------LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCK 111 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~---------l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k 111 (201)
..+-..|+.+| ||.+=+||.+.. ..+.+.+++...+.+ .+.++.. | ......-.+.++.+.
T Consensus 23 ~~ia~~L~~~G--Vd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~--~-----~~~~~~~~~~l~~a~ 92 (266)
T cd07944 23 KAIYRALAAAG--IDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAV--M-----VDYGNDDIDLLEPAS 92 (266)
T ss_pred HHHHHHHHHCC--CCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEE--E-----ECCCCCCHHHHHHHh
Confidence 34556677787 899999986553 234566666666553 1222211 0 111001245677777
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 112 ~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+.|++.|-|+...-. -+.-.+.|+.+++.|++|
T Consensus 93 ~~gv~~iri~~~~~~--~~~~~~~i~~ak~~G~~v 125 (266)
T cd07944 93 GSVVDMIRVAFHKHE--FDEALPLIKAIKEKGYEV 125 (266)
T ss_pred cCCcCEEEEeccccc--HHHHHHHHHHHHHCCCeE
Confidence 778888777754443 344456788888888766
No 255
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=63.22 E-value=79 Score=29.26 Aligned_cols=118 Identities=14% Similarity=0.228 Sum_probs=67.4
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc---eecCccH----HHHHH
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDW----AEHLI 96 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~Gtl----fE~al 96 (201)
.|++.|+=-|=-++ -...+.++++.+.+.-.+-.+..-| +--.|.++++-++++|+ .++.-++ +...-
T Consensus 105 ~Gv~~I~~tGGEPl-lr~dl~eli~~l~~~~gi~~i~itT----NG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~it 179 (373)
T PLN02951 105 AGVDKIRLTGGEPT-LRKDIEDICLQLSSLKGLKTLAMTT----NGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLT 179 (373)
T ss_pred CCCCEEEEECCCCc-chhhHHHHHHHHHhcCCCceEEEee----CcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHh
Confidence 36655543332112 2234667777665431211122222 22224556667777775 4565443 22221
Q ss_pred HhC-CchHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHCCCeE
Q 028948 97 RNG-PSAFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 97 ~qg-~~~~~eyl~~~k~lGFd~IEISdGti~-i~~~~r~~lI~~~~~~Gf~v 146 (201)
..+ -+++-+-++.+++.||..|.|+--.+. +..++..++++.+++.|..+
T Consensus 180 r~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~v 231 (373)
T PLN02951 180 RRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPINV 231 (373)
T ss_pred cCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCCeE
Confidence 111 134556667888899988888765543 78899999999999999766
No 256
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=62.95 E-value=48 Score=27.78 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHCC-CeEcccccc-ccCCCCcccccccccccEEEecc
Q 028948 105 EYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAG-LKAKPKFAV-MFNKSDIPSDRDRAFGAYVARAP 175 (201)
Q Consensus 105 eyl~~~k~lGFd~IEISdGti~i~~-~~r~~lI~~~~~~G-f~v~pE~g~-k~~~~dl~ag~~~a~g~~Vi~E~ 175 (201)
+.++.|.+.|-+.|.+.......|. ++-.++++.+++.| +.+.+++.- .....-.++|.+ |+.++.
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d-----~i~~~~ 151 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFD-----IIGTTL 151 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCC-----EEEccC
Confidence 4779999999999988755555565 36668999999998 766554321 111223445666 776653
No 257
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=62.60 E-value=69 Score=29.08 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=60.8
Q ss_pred HHHHHH--hhcccccEEEeeCccccccChhHHHHHHHHHHhCCceec----CccHHHHHHHhCCchHHHHHHHHHHcCCC
Q 028948 43 LEDIFE--SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (201)
Q Consensus 43 l~DlLe--~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~----~GtlfE~al~qg~~~~~eyl~~~k~lGFd 116 (201)
++++++ ..-+|+..+.++.-...+.|.-+-.+.++.++++|+.++ .-+.-|. + +.+.+=++.+++.|+.
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei---~--d~~~~ai~~L~~~Gi~ 235 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEI---D--AEVADALAKLRNAGIT 235 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhC---c--HHHHHHHHHHHHcCCE
Confidence 566662 234677776664433567777667788888888885333 2123333 1 2566777788888865
Q ss_pred EEEecCCcccC-----ChhHHHHHHHHHHHCCCeEc
Q 028948 117 TIELNVGSLEI-----PEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 117 ~IEISdGti~i-----~~~~r~~lI~~~~~~Gf~v~ 147 (201)
. .+-|+-+ +.++..++.+.+.+.|.++.
T Consensus 236 v---~~qtvllkgiNDn~~~l~~L~~~l~~~gv~py 268 (321)
T TIGR03821 236 L---LNQSVLLRGVNDNADTLAALSERLFDAGVLPY 268 (321)
T ss_pred E---EecceeeCCCCCCHHHHHHHHHHHHHcCCeeC
Confidence 3 3333333 56778888888888887763
No 258
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=62.50 E-value=14 Score=37.26 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=51.9
Q ss_pred cChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEE--------------Eec---------
Q 028948 67 MPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI--------------ELN--------- 121 (201)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~eyl~~~k~lGFd~I--------------EIS--------- 121 (201)
-+++-.++-|+.+|+.||.+. +|+=-+.|.. -|+++|+..- ..+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~-----------IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 510 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKE-----------TARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVE 510 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHH
Confidence 356668999999999999764 6864444432 2366666421 011
Q ss_pred --CCcccCChhHHHHHHHHHHHCCCeE-cccccccc
Q 028948 122 --VGSLEIPEETLLRYVRLVKSAGLKA-KPKFAVMF 154 (201)
Q Consensus 122 --dGti~i~~~~r~~lI~~~~~~Gf~v-~pE~g~k~ 154 (201)
+-+-.+.+++|.++|+..++.|-.| -.-.|+.+
T Consensus 511 ~~~vfAr~~Pe~K~~iV~~lq~~G~~VamvGDGvND 546 (755)
T TIGR01647 511 DADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVND 546 (755)
T ss_pred hCCEEEecCHHHHHHHHHHHHhcCCEEEEEcCCccc
Confidence 1466789999999999999999876 33334443
No 259
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=62.44 E-value=16 Score=37.89 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE------EEe--------------cCCcc
Q 028948 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT------IEL--------------NVGSL 125 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~eyl~~~k~lGFd~------IEI--------------SdGti 125 (201)
+++..++-|+.+|+.||.|. +|+=-..|.. -|+++|++. -|+ -+-+-
T Consensus 551 ~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~a-----------IA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfA 619 (903)
T PRK15122 551 PKESAAPAIAALRENGVAVKVLTGDNPIVTAK-----------ICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFA 619 (903)
T ss_pred cHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEE
Confidence 45668999999999999665 6864444332 246777741 111 13566
Q ss_pred cCChhHHHHHHHHHHHCCCeE-cccccccc
Q 028948 126 EIPEETLLRYVRLVKSAGLKA-KPKFAVMF 154 (201)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v-~pE~g~k~ 154 (201)
.+++++|.++|+..++.|-.| -.-.|+.+
T Consensus 620 r~sPe~K~~iV~~Lq~~G~vVamtGDGvND 649 (903)
T PRK15122 620 KLTPLQKSRVLKALQANGHTVGFLGDGIND 649 (903)
T ss_pred EeCHHHHHHHHHHHHhCCCEEEEECCCchh
Confidence 789999999999999999876 34444443
No 260
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=62.28 E-value=9.8 Score=34.28 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHHC
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKSA 142 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~------i~~~~r~~lI~~~~~~ 142 (201)
..-++++.+.+.|.|.||||.|..+ ++......+.+++++.
T Consensus 242 e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~ 288 (336)
T cd02932 242 DSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE 288 (336)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh
Confidence 3456666777889999999988542 2233344565665554
No 261
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=62.18 E-value=20 Score=32.13 Aligned_cols=67 Identities=9% Similarity=0.032 Sum_probs=44.2
Q ss_pred ccChhHHHHHHHHHHhCCceec---CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 028948 66 LMPKPFIEEVVKRAHQHDVYVS---TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~---~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~ 142 (201)
+++-+.|++.|+....++..+. .=.=|++ .+ + -|+.-+.-..+.++..++++.|+++
T Consensus 13 ~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~---~~------~-----------p~~~~~~~~yT~~ei~ei~~yA~~~ 72 (301)
T cd06565 13 VPKVSYLKKLLRLLALLGANGLLLYYEDTFPY---EG------E-----------PEVGRMRGAYTKEEIREIDDYAAEL 72 (301)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEecceec---CC------C-----------cccccCCCCcCHHHHHHHHHHHHHc
Confidence 5666778888888888877332 2111111 11 0 1222223358999999999999999
Q ss_pred CCeEcccccc
Q 028948 143 GLKAKPKFAV 152 (201)
Q Consensus 143 Gf~v~pE~g~ 152 (201)
|+.|.||+-.
T Consensus 73 gI~vIPeid~ 82 (301)
T cd06565 73 GIEVIPLIQT 82 (301)
T ss_pred CCEEEecCCC
Confidence 9999998763
No 262
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=62.14 E-value=21 Score=34.47 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCEEEecCCc--------------ccCC-----hhHHHHHHHHHHHCCCeEcccccccc
Q 028948 104 KEYVEDCKQVGFDTIELNVGS--------------LEIP-----EETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGt--------------i~i~-----~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
.+-|+++++|||++|.++-=+ ..+. .++..+||+.|+++|++|.-.+=...
T Consensus 31 ~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 31 TSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred HHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 344566667777777664211 1222 36899999999999999965444333
No 263
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=62.10 E-value=27 Score=32.98 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=75.6
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEE---EeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGL---KFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G 99 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~l---Kfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g 99 (201)
|.-++=|-+..-.+..++.+++..-.+.+.- .+. .-.-|..+=.++++.++++|| .++.| ++=+..+.. |
T Consensus 117 ~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eit---iE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg 193 (449)
T PRK09058 117 AVYFGGGTPTALSAEDLARLITALREYLPLAPDCEIT---LEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAG 193 (449)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEE---EEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC
Confidence 3445555433226789999999988876532 222 222345556799999999999 88889 677776644 2
Q ss_pred ----CchHHHHHHHHHHcCCCEEEecC--CcccCChhHHHHHHHHHHHCCCe
Q 028948 100 ----PSAFKEYVEDCKQVGFDTIELNV--GSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 100 ----~~~~~eyl~~~k~lGFd~IEISd--Gti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
...+.+.++.+++.||..|-++= |.=.=+.+++.+-++.+.+.+..
T Consensus 194 R~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~ 245 (449)
T PRK09058 194 RKDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLD 245 (449)
T ss_pred CCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCC
Confidence 23466778888899988765432 22233456666777777776643
No 264
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=61.96 E-value=87 Score=27.52 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=11.4
Q ss_pred HHHHHHHhhcccccEEEeeCcc
Q 028948 42 VLEDIFESMGQFVDGLKFSGGS 63 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GT 63 (201)
.+-+.|..+| ||.+=+||+.
T Consensus 24 ~i~~~L~~~G--v~~IE~G~~~ 43 (273)
T cd07941 24 RIARKLDELG--VDYIEGGWPG 43 (273)
T ss_pred HHHHHHHHcC--CCEEEecCCc
Confidence 3344455556 6666666644
No 265
>PRK14705 glycogen branching enzyme; Provisional
Probab=61.84 E-value=18 Score=38.99 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCEEEecCCc----------ccC----------ChhHHHHHHHHHHHCCCeEcccc
Q 028948 103 FKEYVEDCKQVGFDTIELNVGS----------LEI----------PEETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGt----------i~i----------~~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
.++-++++|+|||++||++==+ -.. +.++..++|+.++++|+.|+-.+
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3455789999999999986321 111 46789999999999999996543
No 266
>PRK08444 hypothetical protein; Provisional
Probab=61.84 E-value=1.2e+02 Score=28.15 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=64.9
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhC--CceecCccHHHHHHHhC--CchHHHHHHHHHHcCCCEEEec-----C--
Q 028948 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTIELN-----V-- 122 (201)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg--~~~~~eyl~~~k~lGFd~IEIS-----d-- 122 (201)
+.=+=+-+|-..-.+-+.+.+.++..|+. +|.+..=+..|+.+... .-..++.++..|+.|.+.+--. +
T Consensus 97 ~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~ 176 (353)
T PRK08444 97 IKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEE 176 (353)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHH
Confidence 33333434444444667788889888875 45555436677655441 1368899999999999876431 1
Q ss_pred -----CcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 123 -----GSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 123 -----Gti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
-.-..+.++|.++++.|++.|+++..
T Consensus 177 vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~s 207 (353)
T PRK08444 177 VRKKICKGKVSSERWLEIHKYWHKKGKMSNA 207 (353)
T ss_pred HHhhhCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 13367889999999999999999944
No 267
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=61.83 E-value=19 Score=35.09 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCEEEecCCcc----------cC----------ChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 106 YVEDCKQVGFDTIELNVGSL----------EI----------PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 106 yl~~~k~lGFd~IEISdGti----------~i----------~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
=|+++++||+++|+++==+- .. +.++..++|+.++++|++|.-.+=...
T Consensus 116 ~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH 184 (542)
T TIGR02402 116 KLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNH 184 (542)
T ss_pred hhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 37788999999999864311 00 246889999999999999966554443
No 268
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=61.52 E-value=73 Score=28.79 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=16.2
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCC
Q 028948 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD 83 (201)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~g 83 (201)
|.-+-|++|--.+.+.+.|.+-++.+++.+
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~ 166 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAID 166 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCC
Confidence 444555556555555445555555555544
No 269
>PRK09248 putative hydrolase; Validated
Probab=61.36 E-value=21 Score=30.47 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 028948 72 IEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 72 L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~I 118 (201)
.++.++++.++|++++.|+=+...-.=| .+++-++.+++.||+.+
T Consensus 174 ~~~~~~~~~~~g~~~~~gSDAH~~~~vg--~~~~~~~~~~~~g~~~~ 218 (246)
T PRK09248 174 CRAIAALCKKAGVWVALGSDAHIAFDIG--NFEEALKILDEVGFPEE 218 (246)
T ss_pred HHHHHHHHHHcCCeEEEeCCCCChhhhc--cHHHHHHHHHHcCCCHH
Confidence 3444455555555544442111111112 34455555555555554
No 270
>PRK07572 cytosine deaminase; Validated
Probab=61.31 E-value=60 Score=30.01 Aligned_cols=74 Identities=9% Similarity=0.090 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCCEE-EecCCc--ccCChhHHHHHHHHHHHCC
Q 028948 70 PFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI-ELNVGS--LEIPEETLLRYVRLVKSAG 143 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~eyl~~~k~lGFd~I-EISdGt--i~i~~~~r~~lI~~~~~~G 143 (201)
+.|+.-.+++++||+++.. . +.-+.. . .++.+.+++.+.|+... =++=++ -+.+.....+.++++++.|
T Consensus 191 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~---~--~~~~~~~~~~~~G~~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g 265 (426)
T PRK07572 191 ESVRLLCEIAAERGLRVDMHCDESDDPLS---R--HIETLAAETQRLGLQGRVAGSHLTSMHSMDNYYVSKLIPLMAEAG 265 (426)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCCChhH---H--HHHHHHHHHHHhCCCCCEEEEccchhhcCCHHHHHHHHHHHHHcC
Confidence 5688888888888876643 2 222221 1 34456677778888652 111111 1333455667788888988
Q ss_pred CeEcc
Q 028948 144 LKAKP 148 (201)
Q Consensus 144 f~v~p 148 (201)
..|.+
T Consensus 266 ~~vv~ 270 (426)
T PRK07572 266 VNAIA 270 (426)
T ss_pred CeEEE
Confidence 88743
No 271
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=60.96 E-value=28 Score=28.26 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=48.1
Q ss_pred CCCCceeEecC-CCCCCcchhHHHHHHHhhcccccEEEeeCcccccc-----ChhHHHHHHHHHHhCCceecC-c--cHH
Q 028948 22 RRFGVTEMRSP-HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM-----PKPFIEEVVKRAHQHDVYVST-G--DWA 92 (201)
Q Consensus 22 R~~GlTmV~Dk-G~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~-----p~~~L~eKI~l~~~~gV~v~~-G--tlf 92 (201)
|..|....+|- |. +...++ +|... -+|+||+...-..-. ....++..++++|+.|+.+.- | +.
T Consensus 143 ~~~G~~ialddfg~----~~~~~~-~l~~l--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~- 214 (241)
T smart00052 143 RELGVRIALDDFGT----GYSSLS-YLKRL--PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETP- 214 (241)
T ss_pred HHCCCEEEEeCCCC----cHHHHH-HHHhC--CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCCCH-
Confidence 45577777764 32 333333 33332 399999986532222 335789999999999997664 5 32
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEE
Q 028948 93 EHLIRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 93 E~al~qg~~~~~eyl~~~k~lGFd~I 118 (201)
+-++.|+++|++.+
T Consensus 215 ------------~~~~~l~~~Gi~~~ 228 (241)
T smart00052 215 ------------EQLDLLRSLGCDYG 228 (241)
T ss_pred ------------HHHHHHHHcCCCEE
Confidence 34456677888765
No 272
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=60.78 E-value=38 Score=29.35 Aligned_cols=17 Identities=6% Similarity=-0.089 Sum_probs=8.3
Q ss_pred ChhHHHHHHHHHHHCCC
Q 028948 128 PEETLLRYVRLVKSAGL 144 (201)
Q Consensus 128 ~~~~r~~lI~~~~~~Gf 144 (201)
+.++..+.++.+++.+.
T Consensus 185 t~~d~~~~~~~l~~l~~ 201 (296)
T TIGR00433 185 TVEDRIGLALALANLPP 201 (296)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 34445555555555443
No 273
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=60.61 E-value=19 Score=28.87 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHcCCCEEE-ecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 102 AFKEYVEDCKQVGFDTIE-LNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IE-ISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
.+.+.++.+++.|+..+- +=-|.+..+..++...++++++.||.
T Consensus 70 ~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~ 114 (137)
T PRK02261 70 DCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFD 114 (137)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCC
Confidence 345555666666553332 33445555666666666666666654
No 274
>PRK15108 biotin synthase; Provisional
Probab=60.55 E-value=79 Score=28.95 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHH
Q 028948 70 PFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRL 138 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti---------~i~~~~r~~lI~~ 138 (201)
+.+.+.++.+|+.++.++. |. .-++.+++.|+.|.|.+=+|=-|. .=+-++|++.|+.
T Consensus 111 e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~ 179 (345)
T PRK15108 111 PYLEQMVQGVKAMGLETCMTLGT-----------LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEK 179 (345)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHH
Confidence 5688888888888876542 31 226777888899999776643321 2356789999999
Q ss_pred HHHCCCeEcc
Q 028948 139 VKSAGLKAKP 148 (201)
Q Consensus 139 ~~~~Gf~v~p 148 (201)
+++.|+++..
T Consensus 180 a~~~G~~v~s 189 (345)
T PRK15108 180 VRDAGIKVCS 189 (345)
T ss_pred HHHcCCceee
Confidence 9999998843
No 275
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=60.45 E-value=16 Score=36.64 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCcee--cCcc--HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 72 IEEVVKRAHQHDVYV--STGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 72 L~eKI~l~~~~gV~v--~~Gt--lfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
++|+.+-.|+-||++ ++|. +--.++++. --+|+|+.+|+ +|+|.++|++-++.|=-|
T Consensus 452 i~ERf~elR~MgIkTvM~TGDN~~TAa~IA~E-AGVDdfiAeat-----------------PEdK~~~I~~eQ~~grlV 512 (681)
T COG2216 452 IKERFAELRKMGIKTVMITGDNPLTAAAIAAE-AGVDDFIAEAT-----------------PEDKLALIRQEQAEGRLV 512 (681)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHH-hCchhhhhcCC-----------------hHHHHHHHHHHHhcCcEE
Confidence 899999999999943 4684 444444442 26999999885 899999999999998665
No 276
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=60.40 E-value=24 Score=31.55 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=37.7
Q ss_pred ChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCc
Q 028948 68 PKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGS 124 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~----~~~eyl~~~k~lGFd~IEISdGt 124 (201)
....+.+.|..+|+.|++|.. |||-.......+. -++...+.+++.|||.|.|.=-.
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 345689999999999997765 7653322111111 35566667788999999986433
No 277
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=60.25 E-value=18 Score=31.42 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 68 PKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
+.+.+++-|+.+-++|| -++ .|+--|..... .+.-.+.++.+.+.-=+.+.|-.|....+.++=.++.+.+++.|..
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt-~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGESPTLS-DEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcchhhCC-HHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCC
Confidence 44567777777777777 222 35444443222 1233444443333321345666666667777777777777777766
Q ss_pred E
Q 028948 146 A 146 (201)
Q Consensus 146 v 146 (201)
.
T Consensus 98 ~ 98 (284)
T cd00950 98 A 98 (284)
T ss_pred E
Confidence 3
No 278
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=60.01 E-value=25 Score=30.99 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCC---EEEecCCcccCChhHHHHHHHHHHH
Q 028948 68 PKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFD---TIELNVGSLEIPEETLLRYVRLVKS 141 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~eyl~~~k~lGFd---~IEISdGti~i~~~~r~~lI~~~~~ 141 (201)
+.+.+++.++.++++|+++.. . +--|. + ..+++.++.+++.|+. .++=....-+.+.++..+.++++++
T Consensus 187 s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~---~--~~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~ 261 (398)
T cd01293 187 GEESLDTLFELAQEHGLDIDLHLDETDDPG---S--RTLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAE 261 (398)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeCCCCCcc---h--hHHHHHHHHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHHH
Confidence 456788888888888876653 2 11110 1 1344556667777773 2222222224556676788999999
Q ss_pred CCCeEcc
Q 028948 142 AGLKAKP 148 (201)
Q Consensus 142 ~Gf~v~p 148 (201)
.|..+.+
T Consensus 262 ~g~~v~~ 268 (398)
T cd01293 262 AGISVVS 268 (398)
T ss_pred cCCeEEe
Confidence 9988754
No 279
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=59.92 E-value=21 Score=37.28 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------------------ChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------------------PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i--------------------~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
.+.+-+.+.++|||++|.+|-=+-.. +.++..++|+.++++|++|.-.+=...
T Consensus 21 ~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH 93 (879)
T PRK14511 21 DAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNH 93 (879)
T ss_pred HHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 35566778888888888887532211 458899999999999999955544443
No 280
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=59.85 E-value=30 Score=32.57 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=70.1
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc---cHHHHHHHh--C-
Q 028948 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRN--G- 99 (201)
Q Consensus 26 lTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~q--g- 99 (201)
+-.|-|=.+ ..+--|..+...+|-+-+-=|. +=.++.+++.++.|+++||++--| |=+|.-+.+ |
T Consensus 73 iPlVADIHF-------d~~lAl~a~~~g~dkiRINPGN--ig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~ 143 (346)
T TIGR00612 73 VPLVADIHF-------DYRLAALAMAKGVAKVRINPGN--IGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGD 143 (346)
T ss_pred CCEEEeeCC-------CcHHHHHHHHhccCeEEECCCC--CCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCC
Confidence 445555554 2455577888899999987776 344778999999999999988765 433433333 2
Q ss_pred C------chHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 028948 100 P------SAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 132 (201)
Q Consensus 100 ~------~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r 132 (201)
+ .+.-++++.|.++||+-|=||--+-+.+.--.
T Consensus 144 ~t~eamveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ 182 (346)
T TIGR00612 144 ATAEAMVQSALEEAAILEKLGFRNVVLSMKASDVAETVA 182 (346)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHH
Confidence 1 24567899999999999999987777665443
No 281
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=59.82 E-value=1.1e+02 Score=28.09 Aligned_cols=93 Identities=12% Similarity=0.020 Sum_probs=58.6
Q ss_pred ccEEEeeCcccc--ccChhHHHHHHHHHHhCCceecC---c-cHHHHHHHhCCchHHHHHHHHHHcCCCEE--EecCCcc
Q 028948 54 VDGLKFSGGSHS--LMPKPFIEEVVKRAHQHDVYVST---G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI--ELNVGSL 125 (201)
Q Consensus 54 ID~lKfg~GTs~--l~p~~~L~eKI~l~~~~gV~v~~---G-tlfE~al~qg~~~~~eyl~~~k~lGFd~I--EISdGti 125 (201)
+..+|.+.--.. ..+.+.|.+..++++++|..+.. + ...|.. .+++.++.++..|.... -+|...-
T Consensus 181 a~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~------av~~~~~~a~~~g~r~~i~H~ss~~~ 254 (415)
T cd01297 181 ALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDSILE------ALDELLRLGRETGRPVHISHLKSAGA 254 (415)
T ss_pred CeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccccHHH------HHHHHHHHHHHhCCCEEEEEEecCCC
Confidence 456776531121 46778899999999999998864 2 333322 67778888888876432 2222111
Q ss_pred --cCChhHHHHHHHHHHHCCCeEcccccc
Q 028948 126 --EIPEETLLRYVRLVKSAGLKAKPKFAV 152 (201)
Q Consensus 126 --~i~~~~r~~lI~~~~~~Gf~v~pE~g~ 152 (201)
.=...+.+++|+++++.|+.|..|.--
T Consensus 255 ~~~~~~~~~l~~i~~a~~~G~~v~~e~~p 283 (415)
T cd01297 255 PNWGKIDRLLALIEAARAEGLQVTADVYP 283 (415)
T ss_pred cccchHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 011233478899999999988766443
No 282
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=59.06 E-value=11 Score=33.42 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=58.0
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHH-------hCCceecCccHHHHHHHh
Q 028948 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAH-------QHDVYVSTGDWAEHLIRN 98 (201)
Q Consensus 26 lTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~-------~~gV~v~~GtlfE~al~q 98 (201)
|=.=+|+- ......++++..++++|++|.|+=..+.+..++|+|-.+..| -|+|+-..---.+.+...
T Consensus 14 livaLD~~-----~~~~~~~~~~~~~~~~~~~Kvg~~l~~~~g~~~~~el~~~~~~VflDlK~~DIpnT~~~~~~~~~~~ 88 (240)
T COG0284 14 LIVALDVP-----TEEEALAFVDKLGPTVDFVKVGKPLVAFFGADILEELKARGKKVFLDLKLADIPNTVALAAKAAADL 88 (240)
T ss_pred eEEEECCC-----CHHHHHHHHHHhhccccEEEEchHHHHhccHHHHHHHHHhCCceEEeeecccchHHHHHHHHHhhhc
Confidence 44445655 455668899999999999999999999999999999888875 445532222222222111
Q ss_pred -----------CCchHHHHHHHHHHcC
Q 028948 99 -----------GPSAFKEYVEDCKQVG 114 (201)
Q Consensus 99 -----------g~~~~~eyl~~~k~lG 114 (201)
|.+.++.+.+.....|
T Consensus 89 g~d~vtvH~~~G~~~~~~~~e~~~~~~ 115 (240)
T COG0284 89 GADAVTVHAFGGFDMLRAAKEALEAGG 115 (240)
T ss_pred CCcEEEEeCcCCHHHHHHHHHHHhhcC
Confidence 3346788888888877
No 283
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=58.54 E-value=13 Score=34.75 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=55.0
Q ss_pred hhHHHHHHHhhcccccEEEeeCccccccCh-------hHHHHHHHHHHhCCceecC---ccHHHHHHHhCCchHHHHHHH
Q 028948 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK-------PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVED 109 (201)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~p~-------~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~~~~eyl~~ 109 (201)
....+.+|+.|..| +.|.=| ||...|+ +.+++.+++||++|..+.. ...|+.+=..- +. ++.
T Consensus 13 ~~~~~~yi~~a~~~--Gf~~iF-TSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~-~d----l~~ 84 (357)
T PF05913_consen 13 FEENKAYIEKAAKY--GFKRIF-TSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISY-DD----LSF 84 (357)
T ss_dssp HHHHHHHHHHHHCT--TEEEEE-EEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BT-TB----THH
T ss_pred HHHHHHHHHHHHHC--CCCEEE-CCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCH-HH----HHH
Confidence 45778888888876 334334 5566665 3577888999999998876 24566554332 13 345
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 110 ~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
.+++|++.+-+.+|+-. ..+.++.++ |+++
T Consensus 85 ~~~lGi~~lRlD~Gf~~------~~ia~ls~n-g~~I 114 (357)
T PF05913_consen 85 FKELGIDGLRLDYGFSG------EEIAKLSKN-GIKI 114 (357)
T ss_dssp HHHHT-SEEEESSS-SC------HHHHHHTTT--SEE
T ss_pred HHHcCCCEEEECCCCCH------HHHHHHHhC-CCEE
Confidence 68899999999999874 233334444 7776
No 284
>PLN03059 beta-galactosidase; Provisional
Probab=58.44 E-value=19 Score=37.48 Aligned_cols=49 Identities=22% Similarity=0.508 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHHcCCCEEE---------ecCCcccC-ChhHHHHHHHHHHHCCCeEcc
Q 028948 100 PSAFKEYVEDCKQVGFDTIE---------LNVGSLEI-PEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 100 ~~~~~eyl~~~k~lGFd~IE---------ISdGti~i-~~~~r~~lI~~~~~~Gf~v~p 148 (201)
|+.-++-|+.+|.+||++|| -..|..+. ...|..++|+.|++.||.|+-
T Consensus 58 p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvil 116 (840)
T PLN03059 58 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHL 116 (840)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEe
Confidence 45788889999999999998 24444444 367888999999999999954
No 285
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=58.33 E-value=43 Score=26.59 Aligned_cols=93 Identities=13% Similarity=-0.010 Sum_probs=65.6
Q ss_pred HHHHHHH-hhcccccEEEeeCccccccChhHHHHHHHHHHhCCce--ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 028948 42 VLEDIFE-SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 42 ~l~DlLe-~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~--v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~I 118 (201)
...++-. ..+++| +-|-.+ +++++.+ |.+ .+++.||. +-.|-..+.|+.+- . ..+.++||+.+
T Consensus 52 ~~~~l~~~~~~~~v-i~K~~~--saf~~t~-L~~---~L~~~gi~~lii~G~~T~~CV~~T--a-----~~a~~~g~~v~ 117 (157)
T cd01012 52 TVPELREVFPDAPV-IEKTSF--SCWEDEA-FRK---ALKATGRKQVVLAGLETHVCVLQT--A-----LDLLEEGYEVF 117 (157)
T ss_pred chHHHHhhCCCCCc-eecccc--cCcCCHH-HHH---HHHhcCCCEEEEEEeeccHHHHHH--H-----HHHHHCCCEEE
Confidence 3444433 345444 558774 4455543 444 45688983 44477889998885 3 34566899999
Q ss_pred EecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 119 ELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
=++|++-+.+++.....++..+..|-++.+
T Consensus 118 v~~Da~as~~~~~h~~al~~~~~~~~~v~~ 147 (157)
T cd01012 118 VVADACGSRSKEDHELALARMRQAGAVLTT 147 (157)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHCCCEEee
Confidence 999999999999999999999998877643
No 286
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=58.30 E-value=1e+02 Score=27.01 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=51.3
Q ss_pred hHHHHHHHhhccc-ccEEEeeCc--------cccccChhHHHHHHHHHHhC-CceecCc-cHHHHHHHhCCchHHHHHHH
Q 028948 41 NVLEDIFESMGQF-VDGLKFSGG--------SHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (201)
Q Consensus 41 ~~l~DlLe~ag~y-ID~lKfg~G--------Ts~l~p~~~L~eKI~l~~~~-gV~v~~G-tlfE~al~qg~~~~~eyl~~ 109 (201)
..+.+..+.+-++ .|++=+-++ .....+.+.+.+.++-.++. ++++..- +. +.+.+.+..+.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-------~~~~~~~~a~~ 174 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-------NVTDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-------CchhHHHHHHH
Confidence 3444444444455 777766444 33445667888999999888 7776642 21 11246778888
Q ss_pred HHHcCCCEEEecCCcc
Q 028948 110 CKQVGFDTIELNVGSL 125 (201)
Q Consensus 110 ~k~lGFd~IEISdGti 125 (201)
+.+.|.|.|-++|.+.
T Consensus 175 ~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 175 AEEAGADGLTLINTLK 190 (296)
T ss_pred HHHcCCCEEEEECCCc
Confidence 9999999999976543
No 287
>PRK11059 regulatory protein CsrD; Provisional
Probab=58.17 E-value=29 Score=33.78 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCCceeEe-cCCCCCCcchhHHHHHHHhhcccccEEEeeCc-----cccccChhHHHHHHHHHHhCCceecC-ccHHHH
Q 028948 22 RRFGVTEMR-SPHYTLSSSHNVLEDIFESMGQFVDGLKFSGG-----SHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEH 94 (201)
Q Consensus 22 R~~GlTmV~-DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~G-----Ts~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~ 94 (201)
|..|....+ |-|.+.. ...++.++ -+|+||+--. ...-.+...++..+++||+.|+.|.- |
T Consensus 543 ~~~G~~iaiddfG~g~~-s~~~L~~l------~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAeg----- 610 (640)
T PRK11059 543 RGLGCRLAVDQAGLTVV-STSYIKEL------NVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATG----- 610 (640)
T ss_pred HHCCCEEEEECCCCCcc-cHHHHHhC------CCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEE-----
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEE
Q 028948 95 LIRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 95 al~qg~~~~~eyl~~~k~lGFd~I 118 (201)
... ++-++.++++|+|.+
T Consensus 611 --VEt----~~~~~~l~~lGvd~~ 628 (640)
T PRK11059 611 --VES----REEWQTLQELGVSGG 628 (640)
T ss_pred --eCC----HHHHHHHHHhCCCee
No 288
>PLN02321 2-isopropylmalate synthase
Probab=57.94 E-value=22 Score=35.77 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=64.7
Q ss_pred EEEeeCccccccCh-----------hHHHHHHHHHHhCCc-eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 028948 56 GLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (201)
Q Consensus 56 ~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV-~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdG 123 (201)
.+-+-..||-++.+ +.+++-+++++++|. .|..+ .|.+..-+++.+-++++.+.+.|.+.|=|.|-
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs--~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DT 262 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS--PEDAGRSDPEFLYRILGEVIKAGATTLNIPDT 262 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe--cccCCCCCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 35555566655432 236778899999987 35554 34444555668889999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHC
Q 028948 124 SLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~ 142 (201)
.--+.+++-.++|+.++++
T Consensus 263 vG~~~P~~v~~li~~l~~~ 281 (632)
T PLN02321 263 VGYTLPSEFGQLIADIKAN 281 (632)
T ss_pred ccCCCHHHHHHHHHHHHHh
Confidence 9999999999999999876
No 289
>PRK08417 dihydroorotase; Provisional
Probab=57.91 E-value=1.5e+02 Score=27.11 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=22.9
Q ss_pred cCChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
-++..+=.++|+.+|+.|..|..|+-...
T Consensus 202 hvS~~~~~~~i~~ak~~g~~vt~ev~ph~ 230 (386)
T PRK08417 202 TLALPRSLELLDKFKSEGEKLLKEVSIHH 230 (386)
T ss_pred eCCCHHHHHHHHHHHHCCCCEEEEechHH
Confidence 46667778899999999999977777554
No 290
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=57.62 E-value=29 Score=24.04 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=28.3
Q ss_pred HHHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHc
Q 028948 74 EVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQV 113 (201)
Q Consensus 74 eKI~l~~~~gV~v~~G---tlfE~al~qg~~~~~eyl~~~k~l 113 (201)
+..++.++|||..|-| +|-|++-.+| =..+++++++.++
T Consensus 14 ~~a~vf~~~gIDfCCgG~~~L~eA~~~~~-ld~~~vl~~L~~l 55 (56)
T PF04405_consen 14 RAARVFRKYGIDFCCGGNRSLEEACEEKG-LDPEEVLEELNAL 55 (56)
T ss_pred HHHHHHHHcCCcccCCCCchHHHHHHHcC-CCHHHHHHHHHHc
Confidence 3578899999999885 4777776665 3477777776653
No 291
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=57.45 E-value=1.1e+02 Score=27.21 Aligned_cols=95 Identities=20% Similarity=0.271 Sum_probs=68.9
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEI 120 (201)
..+..+|+... +|.+=.| +++.+.+..++=.+|.+.|+.++.= .+.+ .=.+++++.-+.||+++=|
T Consensus 76 e~L~~~l~~l~--~d~iv~G----aI~s~yqk~rve~lc~~lGl~~~~P-----LWg~---d~~ell~e~~~~Gf~~~Iv 141 (223)
T COG2102 76 EELKEALRRLK--VDGIVAG----AIASEYQKERVERLCEELGLKVYAP-----LWGR---DPEELLEEMVEAGFEAIIV 141 (223)
T ss_pred HHHHHHHHhCc--ccEEEEc----hhhhHHHHHHHHHHHHHhCCEEeec-----ccCC---CHHHHHHHHHHcCCeEEEE
Confidence 34445566666 7888777 4888888899999999999987742 2333 3467888889999999999
Q ss_pred cCCcccCCh---------hHHHHHHHHHHHCCCeEccc
Q 028948 121 NVGSLEIPE---------ETLLRYVRLVKSAGLKAKPK 149 (201)
Q Consensus 121 SdGti~i~~---------~~r~~lI~~~~~~Gf~v~pE 149 (201)
+.-...++. +...++....++.|+.+.-|
T Consensus 142 ~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~GE 179 (223)
T COG2102 142 AVSAEGLDESWLGRRIDREFLEELKSLNRRYGIHPAGE 179 (223)
T ss_pred EEeccCCChHHhCCccCHHHHHHHHHHHHhcCCCccCC
Confidence 988887775 44455556666778777433
No 292
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=57.42 E-value=78 Score=28.71 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=75.2
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccc--cEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFV--DGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G- 99 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yI--D~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g- 99 (201)
|..++=|-+....+..++.+++..-.+- +.+.+ |.-.-|..+-.++++.++++|+ .++-| ++-+..+.. |
T Consensus 54 ~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~~~ei---tie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R 130 (374)
T PRK05799 54 SIFIGGGTPTYLSLEALEILKETIKKLNKKEDLEF---TVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGR 130 (374)
T ss_pred EEEECCCcccCCCHHHHHHHHHHHHhCCCCCCCEE---EEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCC
Confidence 3345555333225667777776654321 11222 2224466667899999999999 77778 666655542 2
Q ss_pred ---CchHHHHHHHHHHcCCCE--EEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 100 ---PSAFKEYVEDCKQVGFDT--IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 100 ---~~~~~eyl~~~k~lGFd~--IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
.+.+.+-++.+++.||+. +-+--|.-.-+.+++.+.++.+.+.+..
T Consensus 131 ~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~ 181 (374)
T PRK05799 131 IHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVELNPE 181 (374)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 123555677788999984 5666676677888999999999988855
No 293
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=57.38 E-value=23 Score=31.27 Aligned_cols=65 Identities=14% Similarity=0.007 Sum_probs=44.3
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhc-c--cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHh
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFESMG-Q--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN 98 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~ag-~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~q 98 (201)
.++....|=. +. ++..++.+++..+ + -+|.-|+|+ +. ..++-.++|++|||++++|+++|.-+..
T Consensus 227 ~~ipIa~~E~--~~-~~~~~~~~~~~~~~d~v~~~~~~~GG----i~---~~~~~~~~a~~~gi~~~~~~~~~~~i~~ 294 (316)
T cd03319 227 SPLPIMADES--CF-SAADAARLAGGGAYDGINIKLMKTGG----LT---EALRIADLARAAGLKVMVGCMVESSLSI 294 (316)
T ss_pred CCCCEEEeCC--CC-CHHHHHHHHhcCCCCEEEEeccccCC----HH---HHHHHHHHHHHcCCCEEEECchhhHHHH
Confidence 3455555543 34 7778888888543 2 335555554 32 2788899999999999999887887765
No 294
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=57.25 E-value=18 Score=32.97 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=41.4
Q ss_pred CCCCCceeEecCCCCCC------------cchhHHHHHHHhhcccccEEEeeCccccccChhHH--HHHHHHHHhCCcee
Q 028948 21 PRRFGVTEMRSPHYTLS------------SSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYV 86 (201)
Q Consensus 21 PR~~GlTmV~DkG~s~~------------~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L--~eKI~l~~~~gV~v 86 (201)
||-.|+ ++-+|.++.. +.+..++.+++.+. |++|+= .+-|+ .. ++.|+.++++|+.|
T Consensus 118 ~~~~g~-hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~---~~ik~~----tlaPE-~~~~~~~i~~~~~~gi~v 188 (374)
T cd00854 118 AEILGI-HLEGPFISPEKKGAHPPEYLRAPDPEELKKWLEAAG---GLIKLV----TLAPE-LDGALELIRYLVERGIIV 188 (374)
T ss_pred CeeEEE-eeecCccCcccCCCCCHHHcCCcCHHHHHHHHHhcC---CCEEEE----EECCC-CCChHHHHHHHHHCCeEE
Confidence 555555 5555655332 13356666666544 889985 45554 46 89999999999999
Q ss_pred cCc-cH
Q 028948 87 STG-DW 91 (201)
Q Consensus 87 ~~G-tl 91 (201)
+.| +.
T Consensus 189 ~~GH~~ 194 (374)
T cd00854 189 SIGHSD 194 (374)
T ss_pred EeeCCc
Confidence 977 53
No 295
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=57.17 E-value=81 Score=28.58 Aligned_cols=70 Identities=23% Similarity=0.185 Sum_probs=51.3
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccChh--HHHHHHHHHHhCCc-eecCc--c-HHHHHHHhCCchHHHHHHHHHHcC
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKP--FIEEVVKRAHQHDV-YVSTG--D-WAEHLIRNGPSAFKEYVEDCKQVG 114 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~--~L~eKI~l~~~~gV-~v~~G--t-lfE~al~qg~~~~~eyl~~~k~lG 114 (201)
+.++...+.+| |=+|-=-|-+-|++.. .+++.++..++++| .+||+ | +-+.++.+ +.++
T Consensus 181 niv~~~~~~~g---~rv~~ViGGFHL~~~~~~~l~~~~~~l~el~v~~i~pcHCTg~~a~~~l~------------~~~~ 245 (259)
T COG1237 181 NIVEWAKERSG---DRVKAVIGGFHLIGASEERLEEVADYLKELGVEKIYPCHCTGEKAKRYLR------------RVFG 245 (259)
T ss_pred HHHHHHHHhcc---ceeEEEeeeeccCCCcHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHH------------HHcC
Confidence 66788888888 5566555666666654 68899999999999 89997 4 65555544 4677
Q ss_pred CCEEEecCCcc
Q 028948 115 FDTIELNVGSL 125 (201)
Q Consensus 115 Fd~IEISdGti 125 (201)
...+++..|++
T Consensus 246 ~~~~~v~~G~~ 256 (259)
T COG1237 246 EKYEEVGVGTE 256 (259)
T ss_pred cceeeccCceE
Confidence 77888877764
No 296
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.16 E-value=23 Score=24.33 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=33.7
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCc-----------ccCC-hhHHHHHHHHHHHCCCeE
Q 028948 100 PSAFKEYVEDCKQVGFDTIELNVGS-----------LEIP-EETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 100 ~~~~~eyl~~~k~lGFd~IEISdGt-----------i~i~-~~~r~~lI~~~~~~Gf~v 146 (201)
|..+.++++...+ |.+.+|++-.. ++.+ .+...++++..++.|+.+
T Consensus 9 PG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 9 PGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 4577888888877 88887765432 3333 378889999999999875
No 297
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=56.91 E-value=58 Score=29.31 Aligned_cols=69 Identities=12% Similarity=0.245 Sum_probs=41.7
Q ss_pred cccccChhHHHHHHHHHHhCCceecC--ccH--HHHHHHhCCchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHH
Q 028948 63 SHSLMPKPFIEEVVKRAHQHDVYVST--GDW--AEHLIRNGPSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYV 136 (201)
Q Consensus 63 Ts~l~p~~~L~eKI~l~~~~gV~v~~--Gtl--fE~al~qg~~~~~eyl~~~k~lGFd--~IEISdGti~i~~~~r~~lI 136 (201)
..-.|.++.+++.++.|+++||.|.| -+. .+.++.. . .++++. ....+.+.+++..++=..++
T Consensus 75 ~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~----~-------pel~~~~~~~~~~~~~l~~~~~~t~~f~ 143 (326)
T cd06564 75 NDGYYTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKA----M-------PELGLKNPFSKYDKDTLDISNPEAVKFV 143 (326)
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHh----h-------HHhcCCCcccCCCcccccCCCHHHHHHH
Confidence 34467788899999999999999988 222 2222211 1 222222 23456677777766655666
Q ss_pred HHHHHC
Q 028948 137 RLVKSA 142 (201)
Q Consensus 137 ~~~~~~ 142 (201)
+.+-++
T Consensus 144 ~~l~~E 149 (326)
T cd06564 144 KALFDE 149 (326)
T ss_pred HHHHHH
Confidence 554443
No 298
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=56.73 E-value=30 Score=29.67 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCEEEec-CCcccCChhHHHHHHHHHHHCCCeE
Q 028948 103 FKEYVEDCKQVGFDTIELN-VGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEIS-dGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
=+++++.++++|||++-+. |-+++...+-..+-++.+++.|+..
T Consensus 64 ~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~ 108 (250)
T PF09587_consen 64 PPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPY 108 (250)
T ss_pred CHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcE
Confidence 4678999999999999997 7789999999999999999999765
No 299
>PRK07329 hypothetical protein; Provisional
Probab=56.73 E-value=32 Score=29.68 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHhCCc--eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh--hHHHHHHHHHHHCCC
Q 028948 69 KPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE--ETLLRYVRLVKSAGL 144 (201)
Q Consensus 69 ~~~L~eKI~l~~~~gV--~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~--~~r~~lI~~~~~~Gf 144 (201)
++.+++.++.++++|+ .+.++++.-.. ........++.|+++|...|=+++..-...+ ....++++.+++.||
T Consensus 164 ~~~~~~i~~~~~~~~~~lEiNt~~~~~~~---~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a~~~l~~~g~ 240 (246)
T PRK07329 164 EPQLTRIFAKMIDNDLAFELNTKSMYLYG---NEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDAQKLLKEHGI 240 (246)
T ss_pred HHHHHHHHHHHHHcCCeEEEECcccccCC---CCcchHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3456677777777777 44555542111 1112355677778887765666665554443 245566777777777
Q ss_pred eEc
Q 028948 145 KAK 147 (201)
Q Consensus 145 ~v~ 147 (201)
+..
T Consensus 241 ~~~ 243 (246)
T PRK07329 241 KEI 243 (246)
T ss_pred ceE
Confidence 643
No 300
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=56.71 E-value=62 Score=28.81 Aligned_cols=100 Identities=10% Similarity=0.225 Sum_probs=62.6
Q ss_pred HHHHHHHhhcccccEE-EeeCccccccChhHHHHHHHHHHhCCc---eecCccHHHHHH---HhCC---chHHHHHHHHH
Q 028948 42 VLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLI---RNGP---SAFKEYVEDCK 111 (201)
Q Consensus 42 ~l~DlLe~ag~yID~l-Kfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~GtlfE~al---~qg~---~~~~eyl~~~k 111 (201)
.+.++++...++ ..+ ++..-|.. -.+.+.++.++++|+ .++.-|+=+..+ .++. +++-+-++.++
T Consensus 75 ~l~~li~~i~~~-~gi~~v~itTNG----~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~ 149 (334)
T TIGR02666 75 DLVELVARLAAL-PGIEDIALTTNG----LLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAAL 149 (334)
T ss_pred CHHHHHHHHHhc-CCCCeEEEEeCc----hhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHH
Confidence 466777765543 223 44443333 235667888888876 444544433222 2122 34566677888
Q ss_pred HcCCCEEEecCCcc-cCChhHHHHHHHHHHHCCCeE
Q 028948 112 QVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 112 ~lGFd~IEISdGti-~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+.|+..|.|+-=.+ .++.++..++++.+++.|+.+
T Consensus 150 ~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~ 185 (334)
T TIGR02666 150 AAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTL 185 (334)
T ss_pred HcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeE
Confidence 99998777764323 367888999999999999875
No 301
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=56.68 E-value=1.4e+02 Score=28.12 Aligned_cols=88 Identities=22% Similarity=0.234 Sum_probs=59.7
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--------
Q 028948 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------- 125 (201)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti-------- 125 (201)
+..+=|.-.++.. +.+.+++..+..++.++....-+ .-+ .-++.++.+++.|++.|.+.--|.
T Consensus 246 ~~~i~f~Dd~f~~-~~~~~~~l~~~l~~~~i~~~~~~------~~~--~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~ 316 (472)
T TIGR03471 246 VREFFFDDDTFTD-DKPRAEEIARKLGPLGVTWSCNA------RAN--VDYETLKVMKENGLRLLLVGYESGDQQILKNI 316 (472)
T ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHHhhcCceEEEEe------cCC--CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh
Confidence 4455566565544 34457777787888777432211 011 236788999999999988876555
Q ss_pred --cCChhHHHHHHHHHHHCCCeEcccc
Q 028948 126 --EIPEETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 126 --~i~~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
..+.++-.+.|+.+++.|+.+...+
T Consensus 317 ~K~~~~~~~~~~i~~~~~~Gi~v~~~~ 343 (472)
T TIGR03471 317 KKGLTVEIARRFTRDCHKLGIKVHGTF 343 (472)
T ss_pred cCCCCHHHHHHHHHHHHHCCCeEEEEE
Confidence 3566777889999999999986554
No 302
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=56.61 E-value=21 Score=36.99 Aligned_cols=76 Identities=24% Similarity=0.191 Sum_probs=52.2
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE--------------------EEecCCcc
Q 028948 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT--------------------IELNVGSL 125 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~eyl~~~k~lGFd~--------------------IEISdGti 125 (201)
+++..++-|+.+|++||.|. +|+=-+.|.. -|+++|++. ++=-+-+-
T Consensus 551 ~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~-----------IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfA 619 (902)
T PRK10517 551 PKETTAPALKALKASGVTVKILTGDSELVAAK-----------VCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFA 619 (902)
T ss_pred chhhHHHHHHHHHHCCCEEEEEcCCCHHHHHH-----------HHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEE
Confidence 45668899999999999664 6864444432 346777741 00013355
Q ss_pred cCChhHHHHHHHHHHHCCCeE-cccccccc
Q 028948 126 EIPEETLLRYVRLVKSAGLKA-KPKFAVMF 154 (201)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v-~pE~g~k~ 154 (201)
.+++++|.++|+..++.|-.| -.-.|+.+
T Consensus 620 r~sPe~K~~IV~~Lq~~G~vVam~GDGvND 649 (902)
T PRK10517 620 RLTPMHKERIVTLLKREGHVVGFMGDGIND 649 (902)
T ss_pred EcCHHHHHHHHHHHHHCCCEEEEECCCcch
Confidence 799999999999999999877 44445544
No 303
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=56.46 E-value=11 Score=31.47 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=35.1
Q ss_pred chhHHHHHHHhhcccc----cEEEeeCccccccChhHHHHHHHHHHhCCceec
Q 028948 39 SHNVLEDIFESMGQFV----DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS 87 (201)
Q Consensus 39 g~~~l~DlLe~ag~yI----D~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (201)
.+..+.+.++...++. +.+-|.+|-..+.+ +.+.+.++.++++|+.+.
T Consensus 47 s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~-~~~~~li~~~~~~g~~~~ 98 (235)
T TIGR02493 47 TPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQP-EFLSELFKACKELGIHTC 98 (235)
T ss_pred CHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCH-HHHHHHHHHHHHCCCCEE
Confidence 4456666666665554 57999988887765 568899999999998543
No 304
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=56.39 E-value=78 Score=28.99 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhCCceec
Q 028948 71 FIEEVVKRAHQHDVYVS 87 (201)
Q Consensus 71 ~L~eKI~l~~~~gV~v~ 87 (201)
.+++.++..|+||-.+.
T Consensus 82 ~~r~l~d~vh~~G~~i~ 98 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAA 98 (337)
T ss_pred HHHHHHHHHHhcCCEEE
Confidence 47888999999997653
No 305
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=56.28 E-value=34 Score=27.35 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCc---------------ccCChhHHHHHHHHHHHCCCeEcccccc
Q 028948 103 FKEYVEDCKQVGFDTIELNVGS---------------LEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGt---------------i~i~~~~r~~lI~~~~~~Gf~v~pE~g~ 152 (201)
-++|++.+|+.+.++|=|..++ --|..+-..++|+.++++|++|..=+..
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 3688999999999999997662 2456788889999999999999544333
No 306
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=56.14 E-value=70 Score=28.92 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=70.5
Q ss_pred CCceeEecCCCCCC-cchhHHHHHHHhhcc--cccEEEeeCccccccChhHHHHHHHHHHhCCceecCc--c--HHHHHH
Q 028948 24 FGVTEMRSPHYTLS-SSHNVLEDIFESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG--D--WAEHLI 96 (201)
Q Consensus 24 ~GlTmV~DkG~s~~-~g~~~l~DlLe~ag~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G--t--lfE~al 96 (201)
.|++.|+=-|=..+ .....+.++++.... +|..+.++.-+....|..+-.+.++.++++|..++-+ + .-|.
T Consensus 135 ~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el-- 212 (321)
T TIGR03822 135 PEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHAREL-- 212 (321)
T ss_pred CCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhc--
Confidence 46766643332222 134567788877665 2334455543334555555678888888888655444 1 2222
Q ss_pred HhCCchHHHHHHHHHHcCCCEEE---ecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 97 RNGPSAFKEYVEDCKQVGFDTIE---LNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 97 ~qg~~~~~eyl~~~k~lGFd~IE---ISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
.+.+.+-++.+++.|+...= +-.| +.-+.++..++++.+.+.|...
T Consensus 213 ---~~~~~~ai~~L~~~Gi~v~~q~vLl~g-vNd~~~~l~~l~~~l~~~gv~p 261 (321)
T TIGR03822 213 ---TAEARAACARLIDAGIPMVSQSVLLRG-VNDDPETLAALMRAFVECRIKP 261 (321)
T ss_pred ---CHHHHHHHHHHHHcCCEEEEEeeEeCC-CCCCHHHHHHHHHHHHhcCCee
Confidence 23677888889999974321 1112 2355678899999999999775
No 307
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=56.07 E-value=76 Score=26.28 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=57.2
Q ss_pred HhhcccccEEEeeCccccccChhHHHHHHHHHHhCCcee----cC-ccHHHHHHHhCCchHHHHHHHHHHcCCC-----E
Q 028948 48 ESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD-----T 117 (201)
Q Consensus 48 e~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v----~~-GtlfE~al~qg~~~~~eyl~~~k~lGFd-----~ 117 (201)
..+|-=-=++|.+-|+..+-|. .++-++-|+++|+++ |. .+=-+-+.. ..+-|++.++..|+. +
T Consensus 22 k~~Gi~faiikateG~~~~D~~--~~~n~~~A~~aGl~vG~Yhf~~~~~~~~a~~----eA~~f~~~~~~~~~~~~~~~~ 95 (192)
T cd06522 22 KNYGVKAVIVKLTEGTTYRNPY--AASQIANAKAAGLKVSAYHYAHYTSAADAQA----EARYFANTAKSLGLSKNTVMV 95 (192)
T ss_pred HHcCCCEEEEEEcCCCCccChH--HHHHHHHHHHCCCeeEEEEEEecCChHHHHH----HHHHHHHHHHHcCCCCCCceE
Confidence 3344333489999999887766 899999999999954 22 111122222 467788888877654 3
Q ss_pred --EEecCCcccCChhHHHHHHHHHHHCCC-eE
Q 028948 118 --IELNVGSLEIPEETLLRYVRLVKSAGL-KA 146 (201)
Q Consensus 118 --IEISdGti~i~~~~r~~lI~~~~~~Gf-~v 146 (201)
+|-+...-.+. +.-..+++++++.|. ++
T Consensus 96 lD~E~~~~~~~~~-~~~~~F~~~v~~~g~~~~ 126 (192)
T cd06522 96 ADMEDSSSSGNAT-ANVNAFWQTMKAAGYKNT 126 (192)
T ss_pred EEeecCCCcchHH-HHHHHHHHHHHHcCCCCc
Confidence 34433211121 223588888898987 44
No 308
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=55.97 E-value=34 Score=32.08 Aligned_cols=139 Identities=17% Similarity=0.266 Sum_probs=88.7
Q ss_pred hHHHHHHHhh-cccccEEEeeCccccccChhHHHHHHHHHHhCCceecCcc-HHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 028948 41 NVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 41 ~~l~DlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gt-lfE~al~qg~~~~~eyl~~~k~lGFd~I 118 (201)
+.+++.++-- -..|=.++.-.|- +.+. +++-|.-|-++|..|+.|. .| ++|+ .++.+.+++-|....
T Consensus 58 ~s~~~~~e~~~e~liIgia~~gG~--~~~~--~~~~i~eAl~~G~nVvsglh~~---ls~d----p~~~k~A~~~G~rl~ 126 (339)
T COG3367 58 SSVEEALEGLAEALIIGIAPPGGV--LPES--WREYIVEALEAGMNVVSGLHSF---LSDD----PEFVKLAERTGVRLD 126 (339)
T ss_pred ccHHHHHhcCcceEEEEeecCCCc--CcHH--HHHHHHHHHHhCchhhhhhHHH---hhcC----hHHHHHHHHcCCeeE
Confidence 3556666543 3344445544443 3333 8999999999999999984 44 6665 788999999999777
Q ss_pred EecCCcccCChh--------------------------HHHHHHHHHHHCCCeE----ccccccccCC---------CCc
Q 028948 119 ELNVGSLEIPEE--------------------------TLLRYVRLVKSAGLKA----KPKFAVMFNK---------SDI 159 (201)
Q Consensus 119 EISdGti~i~~~--------------------------~r~~lI~~~~~~Gf~v----~pE~g~k~~~---------~dl 159 (201)
-|+.=..+++.- +-+.|-+.+++.|.++ .-+.|+-... .|+
T Consensus 127 dvR~p~~~l~~~~tG~~~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgil~~~~gvvvdav~~Df 206 (339)
T COG3367 127 DVRKPPLDLEYLCTGMARKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGILIADDGVVVDAVVMDF 206 (339)
T ss_pred eeccCccchhhhccCcccccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceeeEEecCceEecchhHHH
Confidence 776544433321 1245666777777766 3444443321 456
Q ss_pred cccccccc-------c-cEEEecccCcCeeccccCCceeeeecc
Q 028948 160 PSDRDRAF-------G-AYVARAPRSTDKLFLASNPEIEVGVGI 195 (201)
Q Consensus 160 ~ag~~~a~-------g-~~Vi~E~Res~~v~~~~~~~~~~~~~~ 195 (201)
.||+-+.+ . -++.+|++.|=+ .|+-.|+.||
T Consensus 207 aAGave~~v~~~~e~~~Dii~VEGQgsl~-----HP~y~vtl~i 245 (339)
T COG3367 207 AAGAVESAVYEAEEKNPDIIFVEGQGSLT-----HPAYGVTLGI 245 (339)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEecccccc-----CCCcccchhh
Confidence 66665522 3 299999998855 7887666665
No 309
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=55.17 E-value=51 Score=29.38 Aligned_cols=72 Identities=25% Similarity=0.376 Sum_probs=49.2
Q ss_pred cChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC--hh----HHHH---HHH
Q 028948 67 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP--EE----TLLR---YVR 137 (201)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~--~~----~r~~---lI~ 137 (201)
-..+.|++.|+.+|++||.|+. -=+|+ .+-++.++++|-++||+-.|...-. .+ +..+ .-+
T Consensus 107 ~~~~~l~~~i~~l~~~gI~VSL--------FiDPd--~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~ 176 (234)
T cd00003 107 GQAEKLKPIIERLKDAGIRVSL--------FIDPD--PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAAK 176 (234)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE--------EeCCC--HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHH
Confidence 3456799999999999999985 11211 3456788999999999998876332 11 2222 334
Q ss_pred HHHHCCCeEcc
Q 028948 138 LVKSAGLKAKP 148 (201)
Q Consensus 138 ~~~~~Gf~v~p 148 (201)
.+++.|+.|-.
T Consensus 177 ~a~~~GL~VnA 187 (234)
T cd00003 177 LARELGLGVNA 187 (234)
T ss_pred HHHHcCCEEec
Confidence 56677888844
No 310
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=55.15 E-value=25 Score=36.17 Aligned_cols=76 Identities=22% Similarity=0.252 Sum_probs=52.2
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE---E---Ee--------------cCCcc
Q 028948 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT---I---EL--------------NVGSL 125 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~eyl~~~k~lGFd~---I---EI--------------SdGti 125 (201)
+++-.++-|+.+|+.||.+. +|+=-+.|.. -|+++|++. + |+ -+-+-
T Consensus 516 ~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~a-----------IA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfA 584 (867)
T TIGR01524 516 PKESTKEAIAALFKNGINVKVLTGDNEIVTAR-----------ICQEVGIDANDFLLGADIEELSDEELARELRKYHIFA 584 (867)
T ss_pred CchhHHHHHHHHHHCCCEEEEEcCCCHHHHHH-----------HHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEE
Confidence 45668999999999999654 6865554433 347777751 1 00 12345
Q ss_pred cCChhHHHHHHHHHHHCCCeE-cccccccc
Q 028948 126 EIPEETLLRYVRLVKSAGLKA-KPKFAVMF 154 (201)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v-~pE~g~k~ 154 (201)
.+++++|.++|+..++.|-.| -.-.|+.+
T Consensus 585 r~~Pe~K~~iV~~lq~~G~vVam~GDGvND 614 (867)
T TIGR01524 585 RLTPMQKSRIIGLLKKAGHTVGFLGDGIND 614 (867)
T ss_pred ECCHHHHHHHHHHHHhCCCEEEEECCCccc
Confidence 689999999999999999876 44444443
No 311
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=55.10 E-value=62 Score=29.76 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=59.3
Q ss_pred chhHHHHHHHhhccc-ccEEE-eeCccccccChhHHHHHHHHHHhCC--ceecCccHHHHHHHhCCchHHHHHHHHHHcC
Q 028948 39 SHNVLEDIFESMGQF-VDGLK-FSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (201)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lK-fg~GTs~l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg~~~~~eyl~~~k~lG 114 (201)
.+.++...++.+.++ +.-+- +|+.+-...+-+.|.+.++..+++. +.+ |.. + .-.+-++.+|+.|
T Consensus 104 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~I------ei~----~-lt~e~~~~Lk~aG 172 (366)
T TIGR02351 104 NEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAI------EVQ----P-LNEEEYKKLVEAG 172 (366)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccc------ccc----c-CCHHHHHHHHHcC
Confidence 344444444433332 44333 3444445455667888888887752 222 221 1 2234448899999
Q ss_pred CCEEEecCCcc-------------cCChhHHHHHHHHHHHCCCe-E
Q 028948 115 FDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLK-A 146 (201)
Q Consensus 115 Fd~IEISdGti-------------~i~~~~r~~lI~~~~~~Gf~-v 146 (201)
++.+-++--|. .=+.++|++.|+++++.||. |
T Consensus 173 v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 218 (366)
T TIGR02351 173 LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKI 218 (366)
T ss_pred CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 99998866554 11578899999999999997 5
No 312
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=55.06 E-value=21 Score=29.32 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=56.8
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCCceecCcc--HHHHHHHhCCchHHHHHHHHHHcCCC---EE--EecCCc-c
Q 028948 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFD---TI--ELNVGS-L 125 (201)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gt--lfE~al~qg~~~~~eyl~~~k~lGFd---~I--EISdGt-i 125 (201)
.=+||.+-||..+-|. ...-++-|+++|+++ |. |+.. -.+.....+.|++.++..+.+ ++ |-.++. -
T Consensus 24 fviiKateG~~y~D~~--~~~~~~~a~~aGl~~--G~Yhy~~~-~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~~~~~ 98 (184)
T cd06525 24 VVYIKATEGTTFVDSY--FNENYNGAKAAGLKV--GFYHFLVG-TSNPEEQAENFYNTIKGKKMDLKPALDVEVNFGLSK 98 (184)
T ss_pred EEEEEecCCCcccCHh--HHHHHHHHHHCCCce--EEEEEeeC-CCCHHHHHHHHHHhccccCCCCCeEEEEecCCCCCH
Confidence 3468999999877665 999999999999854 42 3321 011112678899999988765 33 434331 0
Q ss_pred cCChhHHHHHHHHHHHC-CCeE
Q 028948 126 EIPEETLLRYVRLVKSA-GLKA 146 (201)
Q Consensus 126 ~i~~~~r~~lI~~~~~~-Gf~v 146 (201)
.--.+.-..+++++++. |.++
T Consensus 99 ~~~~~~~~~f~~~v~~~~G~~~ 120 (184)
T cd06525 99 DELNDYVLRFIEEFEKLSGLKV 120 (184)
T ss_pred HHHHHHHHHHHHHHHHHHCCCe
Confidence 11123346788888888 8887
No 313
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=55.01 E-value=1.1e+02 Score=26.36 Aligned_cols=93 Identities=24% Similarity=0.413 Sum_probs=67.1
Q ss_pred HHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 028948 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (201)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEIS 121 (201)
+.+.++..|. +-.+=|++|--.+-+. +.+.++.+++. +++++..|.- .. .-+++++..+++|++.|-||
T Consensus 56 ~~~~~~~~g~-~~~v~~~gGEPll~~d--~~ei~~~~~~~~~~~~~~~TnG-~~------~~~~~~~~l~~~g~~~v~iS 125 (347)
T COG0535 56 VIDELAELGE-IPVVIFTGGEPLLRPD--LLEIVEYARKKGGIRVSLSTNG-TL------LTEEVLEKLKEAGLDYVSIS 125 (347)
T ss_pred HHHHHHHcCC-eeEEEEeCCCcccccc--HHHHHHHHhhcCCeEEEEeCCC-cc------CCHHHHHHHHhcCCcEEEEE
Confidence 3566677777 8888888888777744 99999999955 7776654322 11 12467777899999999999
Q ss_pred CCcccCCh-----------hHHHHHHHHHHHCCCe
Q 028948 122 VGSLEIPE-----------ETLLRYVRLVKSAGLK 145 (201)
Q Consensus 122 dGti~i~~-----------~~r~~lI~~~~~~Gf~ 145 (201)
-.+.+-.. +...+.|+.+++.|+.
T Consensus 126 id~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~ 160 (347)
T COG0535 126 LDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGIL 160 (347)
T ss_pred ecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCe
Confidence 77754332 4556788899999984
No 314
>PLN02428 lipoic acid synthase
Probab=54.95 E-value=35 Score=31.83 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhC--CceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEec------CCccc----CChhHHHH
Q 028948 70 PFIEEVVKRAHQH--DVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN------VGSLE----IPEETLLR 134 (201)
Q Consensus 70 ~~L~eKI~l~~~~--gV~v~~G---tlfE~al~qg~~~~~eyl~~~k~lGFd~IEIS------dGti~----i~~~~r~~ 134 (201)
+...+.++.+|++ |+.+.+| |+-|. .+.+.+-++.++++|+|.+=|. .-.++ +++++..+
T Consensus 231 e~~Le~L~~ak~~~pGi~tkSg~MvGLGET-----~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~ 305 (349)
T PLN02428 231 KQSLDVLKHAKESKPGLLTKTSIMLGLGET-----DEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEF 305 (349)
T ss_pred HHHHHHHHHHHHhCCCCeEEEeEEEecCCC-----HHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHH
Confidence 3455677777888 8887665 55442 2367788888888888888773 33332 46788888
Q ss_pred HHHHHHHCCCeE
Q 028948 135 YVRLVKSAGLKA 146 (201)
Q Consensus 135 lI~~~~~~Gf~v 146 (201)
+=+.+.+.||+.
T Consensus 306 ~~~~~~~~gf~~ 317 (349)
T PLN02428 306 WREYGEEMGFRY 317 (349)
T ss_pred HHHHHHHcCCce
Confidence 888888888864
No 315
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=54.84 E-value=39 Score=29.25 Aligned_cols=115 Identities=14% Similarity=0.095 Sum_probs=64.7
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC----c------------
Q 028948 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----G------------ 89 (201)
Q Consensus 26 lTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~----G------------ 89 (201)
+..+.+=|. . ....++++++. | .|. +-.||+++.+.+.+++..+.+-+--|.++. |
T Consensus 75 ~pv~~~GGi--~-s~~d~~~~~~~-G--a~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i 146 (254)
T TIGR00735 75 IPLTVGGGI--K-SIEDVDKLLRA-G--ADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYI 146 (254)
T ss_pred CCEEEECCC--C-CHHHHHHHHHc-C--CCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEE
Confidence 444444444 3 45556667664 4 444 356899999998888866655211233322 2
Q ss_pred -cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHHC-CCeEccccccc
Q 028948 90 -DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKSA-GLKAKPKFAVM 153 (201)
Q Consensus 90 -tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i--~~~~r~~lI~~~~~~-Gf~v~pE~g~k 153 (201)
+|.|. .+....++.+.+.++|++.|.+++-.-+- +--+ ..+++++++. .+.|..-=|+.
T Consensus 147 ~gw~~~----~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~~~ipvia~GGi~ 209 (254)
T TIGR00735 147 YGGRES----TGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEAVKIPVIASGGAG 209 (254)
T ss_pred eCCccc----CCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHhCCCCEEEeCCCC
Confidence 23332 22367899999999999999996522211 1111 2455555544 44554444444
No 316
>PRK05481 lipoyl synthase; Provisional
Probab=54.81 E-value=41 Score=30.03 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=23.9
Q ss_pred HHHHHHHHHhC--CceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 028948 72 IEEVVKRAHQH--DVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (201)
Q Consensus 72 L~eKI~l~~~~--gV~v~~G---tlfE~al~qg~~~~~eyl~~~k~lGFd~IEI 120 (201)
..+.++.+|+. |+.+.++ |+-|. ...+.+-++.++++||+.+=|
T Consensus 182 ~le~i~~ar~~~pgi~~~t~~IvGfGET-----~ed~~~tl~~lrel~~d~v~i 230 (289)
T PRK05481 182 SLELLKRAKELHPGIPTKSGLMVGLGET-----DEEVLEVMDDLRAAGVDILTI 230 (289)
T ss_pred HHHHHHHHHHhCCCCeEeeeeEEECCCC-----HHHHHHHHHHHHhcCCCEEEE
Confidence 44455556666 6655554 33331 124555666666666666665
No 317
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=54.75 E-value=35 Score=29.89 Aligned_cols=46 Identities=30% Similarity=0.413 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---------ccCChhHHHHHHHHHHHC-CCeEc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGS---------LEIPEETLLRYVRLVKSA-GLKAK 147 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGt---------i~i~~~~r~~lI~~~~~~-Gf~v~ 147 (201)
.+.+..+.+++.|||.|||+-++ +--+.+.-.++++.+++. ++.|.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~ 158 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVI 158 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEE
Confidence 45566677778899999997554 223445556888888887 55543
No 318
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=54.70 E-value=34 Score=30.66 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=48.8
Q ss_pred ccChhHHHHHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCC
Q 028948 66 LMPKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (201)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~G 143 (201)
-++.+.+++.++-+.+.|+ .+. +|| |-.+.. .+.+.++++++.|+...=.+||++ +++ +.++.+++.|
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~~GG--EPll~~---~~~~ii~~~~~~g~~~~l~TNG~l-l~~----e~~~~L~~~g 105 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHFSGG--EPLARP---DLVELVAHARRLGLYTNLITSGVG-LTE----ARLDALADAG 105 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEeCc--cccccc---cHHHHHHHHHHcCCeEEEEeCCcc-CCH----HHHHHHHhCC
Confidence 4566778899999999987 333 354 544433 588999999999997666788864 443 3456666777
Q ss_pred Ce
Q 028948 144 LK 145 (201)
Q Consensus 144 f~ 145 (201)
+.
T Consensus 106 ~~ 107 (358)
T TIGR02109 106 LD 107 (358)
T ss_pred CC
Confidence 64
No 319
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=54.64 E-value=16 Score=34.26 Aligned_cols=123 Identities=20% Similarity=0.149 Sum_probs=77.6
Q ss_pred CCCCCCCCCceeEecCCCCCCcchhHHHHHHHh----hcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecC-cc
Q 028948 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFES----MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GD 90 (201)
Q Consensus 17 R~~KPR~~GlTmV~DkG~s~~~g~~~l~DlLe~----ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~-Gt 90 (201)
|..|....++|.+.+-.+. +..+... |+=|.+- +-....+++.+.++++++-+.+.|+ .+.. ||
T Consensus 46 r~~~~~~~~vtyv~n~~in-------~TN~C~~~C~fCaF~~~~---~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG 115 (370)
T COG1060 46 RRRKRVGDGVTYVVNRNIN-------YTNICVNDCTFCAFYRKP---GDPKAYTLSPEEILEEVREAVKRGITEVLIVGG 115 (370)
T ss_pred HHhhccCCcEEEEEeecCC-------cchhhcCCCCccccccCC---CCccccccCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 3466777899999988873 3333332 3444444 3334567778889999999999998 4432 33
Q ss_pred --------HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccccc
Q 028948 91 --------WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 91 --------lfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
|+|-++.. --++|. ...-.+|+..||.--+.......+ +.+++.++.|+-..|+.|-..
T Consensus 116 ~~p~~~~~y~~~~~~~---ik~~~p-~~~i~a~s~~ei~~~~~~~~~s~~-E~l~~Lk~aGldsmpg~~aei 182 (370)
T COG1060 116 EHPELSLEYYEELFRT---IKEEFP-DLHIHALSAGEILFLAREGGLSYE-EVLKRLKEAGLDSMPGGGAEI 182 (370)
T ss_pred cCCCcchHHHHHHHHH---HHHhCc-chhhcccCHHHhHHHHhccCCCHH-HHHHHHHHcCCCcCcCcceee
Confidence 33333322 112233 334488888888776665555444 667788899999877766443
No 320
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=54.41 E-value=27 Score=29.24 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC--CCeEcc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKP 148 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~--Gf~v~p 148 (201)
.+++|++.++++|+|.|-|+| .-+++.+++. ++++..
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~~----------~g~~~~~k~~~~~~~i~~ 41 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVSN----------PGLLELLKELGPDLKIIA 41 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEcC----------HHHHHHHHHhCCCCcEEE
Confidence 689999999999999999998 6788888888 555533
No 321
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=54.38 E-value=46 Score=31.45 Aligned_cols=93 Identities=23% Similarity=0.321 Sum_probs=60.7
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc---cHHHHHHHhC---
Q 028948 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNG--- 99 (201)
Q Consensus 26 lTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~qg--- 99 (201)
+-.|-|-.+ -++.+-+..+.. +|-+.+-=|. +-.++.+++.++.|+++|+++--| |-+|.-+.+.
T Consensus 75 vPLVaDiHf----~~rla~~~~~~g---~~k~RINPGN--ig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~ 145 (361)
T COG0821 75 VPLVADIHF----DYRLALEAAECG---VDKVRINPGN--IGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGG 145 (361)
T ss_pred CCEEEEeec----cHHHHHHhhhcC---cceEEECCcc--cCcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcC
Confidence 345556555 223333333322 8888887776 445567999999999999998876 4455444431
Q ss_pred C------chHHHHHHHHHHcCCCEEEecCCcccC
Q 028948 100 P------SAFKEYVEDCKQVGFDTIELNVGSLEI 127 (201)
Q Consensus 100 ~------~~~~eyl~~~k~lGFd~IEISdGti~i 127 (201)
| .+.=.+.+.|.+|||+-|-||--.-+.
T Consensus 146 pt~ealveSAl~~a~~~e~l~f~~i~iS~K~Sdv 179 (361)
T COG0821 146 PTPEALVESALEHAELLEELGFDDIKVSVKASDV 179 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCH
Confidence 1 123356788999999999988655443
No 322
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=54.10 E-value=24 Score=37.97 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCEEEecCCc-------------------ccC------------ChhHHHHHHHHHHHCCCeEccccccc
Q 028948 105 EYVEDCKQVGFDTIELNVGS-------------------LEI------------PEETLLRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 105 eyl~~~k~lGFd~IEISdGt-------------------i~i------------~~~~r~~lI~~~~~~Gf~v~pE~g~k 153 (201)
+-++++|+||+++||++==+ -.+ +.++..++|+.++++|++|+-.+=..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~N 270 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFN 270 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 45678999999999985221 111 56789999999999999996655544
Q ss_pred cCC
Q 028948 154 FNK 156 (201)
Q Consensus 154 ~~~ 156 (201)
...
T Consensus 271 Ht~ 273 (1221)
T PRK14510 271 HTG 273 (1221)
T ss_pred ccc
Confidence 433
No 323
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.00 E-value=18 Score=31.15 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 028948 69 KPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (201)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~eyl~~~k~lGFd~IEI 120 (201)
+..-.+.++.++++||.+.|| |.-|..-. .+.|.|+|=+
T Consensus 95 P~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A-------------~~~Gad~vkl 135 (213)
T PRK06552 95 PSFNRETAKICNLYQIPYLPGCMTVTEIVTA-------------LEAGSEIVKL 135 (213)
T ss_pred CCCCHHHHHHHHHcCCCEECCcCCHHHHHHH-------------HHcCCCEEEE
Confidence 345667888899999999998 56555422 4689999998
No 324
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=53.72 E-value=44 Score=30.39 Aligned_cols=104 Identities=9% Similarity=0.086 Sum_probs=62.3
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc------cHHHHHHHhCCchHHH---HHHH
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG------DWAEHLIRNGPSAFKE---YVED 109 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G------tlfE~al~qg~~~~~e---yl~~ 109 (201)
|...+.++++..-+....+.+..-+... .. ..+-++...++|..++.. -++..+-.+. ..++ .++.
T Consensus 125 g~~~l~~li~~I~~~~p~i~Ievl~~d~--~g-~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~--t~e~~Le~l~~ 199 (302)
T TIGR00510 125 GASHLAECIEAIREKLPNIKIETLVPDF--RG-NIAALDILLDAPPDVYNHNLETVERLTPFVRPGA--TYRWSLKLLER 199 (302)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEeCCcc--cC-CHHHHHHHHHcCchhhcccccchHHHHHHhCCCC--CHHHHHHHHHH
Confidence 5567888888877665444443322211 11 356777888877776653 3666664433 5554 5556
Q ss_pred HHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHCCCeEcc
Q 028948 110 CKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 110 ~k~lGFd~IEISdGti---~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
+++++= .+.++.|.| -=+++++.+.++.+++.|+...+
T Consensus 200 ak~~~p-gi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~ 240 (302)
T TIGR00510 200 AKEYLP-NLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVT 240 (302)
T ss_pred HHHhCC-CCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEE
Confidence 666621 133433332 66778888899999999888733
No 325
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=53.35 E-value=75 Score=29.27 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHCCCeE
Q 028948 103 FKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEISdGti---~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+.+.++++.+.|...+-.+--.. ..+.++..++.+.+++.|..+
T Consensus 169 ~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v 215 (415)
T cd01297 169 MRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVY 215 (415)
T ss_pred HHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 34445555556655544332112 366777777777777777665
No 326
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=53.24 E-value=39 Score=28.59 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=32.9
Q ss_pred chhHHHHHHHhhccc----ccEEEeeCccccccChhHHHHHHHHHHhCCcee
Q 028948 39 SHNVLEDIFESMGQF----VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (201)
Q Consensus 39 g~~~l~DlLe~ag~y----ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v 86 (201)
.+.++-+.+.....+ .+.+.|++|=..+ ..+.+.+-++.+++.|+.+
T Consensus 52 t~eei~~~i~~~~~~~~~~~~~V~~sGGEPll-~~~~~~~l~~~~k~~g~~i 102 (246)
T PRK11145 52 TVEELMKEVVTYRHFMNASGGGVTASGGEAIL-QAEFVRDWFRACKKEGIHT 102 (246)
T ss_pred CHHHHHHHHHHhHHHHhcCCCeEEEeCccHhc-CHHHHHHHHHHHHHcCCCE
Confidence 344555656655554 3589999887655 4566889999999999854
No 327
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=53.21 E-value=68 Score=29.11 Aligned_cols=108 Identities=13% Similarity=0.194 Sum_probs=70.0
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCcee----cCccH----HHHHHH----------------
Q 028948 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----STGDW----AEHLIR---------------- 97 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v----~~Gtl----fE~al~---------------- 97 (201)
.++++|..|-+- +++-|.+-+++-+.++..|+-|.+.+-++ ++|+. ++.+..
T Consensus 5 ~~k~ll~~A~~~----~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lH 80 (283)
T PRK07998 5 NGRILLDRIQEK----HVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLH 80 (283)
T ss_pred cHHHHHHHHHHC----CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 566666655432 35667777788888888888888877432 22210 111111
Q ss_pred --hCCchHHHHHHHHHHcCCCEEEecCCcccCChhH----HHHHHHHHHHCCCeEccccccccCCC
Q 028948 98 --NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKS 157 (201)
Q Consensus 98 --qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~----r~~lI~~~~~~Gf~v~pE~g~k~~~~ 157 (201)
++ .--+.+.+|-++||+.|=+ |||- +|.++ =.++++.|+..|.-|..|+|.=-+.+
T Consensus 81 LDH~--~~~e~i~~Ai~~GftSVM~-DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~e 142 (283)
T PRK07998 81 LDHG--KTFEDVKQAVRAGFTSVMI-DGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKE 142 (283)
T ss_pred CcCC--CCHHHHHHHHHcCCCEEEE-eCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcc
Confidence 22 2336777888999999999 6664 56543 34788889999999999998654444
No 328
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=53.19 E-value=42 Score=28.43 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=33.1
Q ss_pred CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHH
Q 028948 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVR 137 (201)
Q Consensus 83 gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~ 137 (201)
+|.+ +|| |-.+..+ .+.+.++.+++.|+...=.++|++.-..+...++++
T Consensus 73 ~V~~-sGG--EPll~~~--~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~ 122 (246)
T PRK11145 73 GVTA-SGG--EAILQAE--FVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLD 122 (246)
T ss_pred eEEE-eCc--cHhcCHH--HHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHH
Confidence 5554 443 4444443 678999999999998878899987532344444444
No 329
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=53.16 E-value=14 Score=27.66 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccc
Q 028948 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (201)
Q Consensus 101 ~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE 149 (201)
+.+.+|...+-+.|.+.|=.|-+-+. +...+.+|.+.++++|-++..|
T Consensus 70 ~~~~~~~~~~L~~G~~VVt~nk~ala-~~~~~~~L~~~A~~~g~~~~~e 117 (117)
T PF03447_consen 70 EAVAEYYEKALERGKHVVTANKGALA-DEALYEELREAARKNGVRIYYE 117 (117)
T ss_dssp HHHHHHHHHHHHTTCEEEES-HHHHH-SHHHHHHHHHHHHHHT-EEEEG
T ss_pred hHHHHHHHHHHHCCCeEEEECHHHhh-hHHHHHHHHHHHHHcCCEEEeC
Confidence 46788999999999999999999999 9999999999999998776543
No 330
>PRK10551 phage resistance protein; Provisional
Probab=53.13 E-value=69 Score=30.89 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=62.8
Q ss_pred HHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC---c-cHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 028948 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~---G-tlfE~al~qg~~~~~eyl~~~k~lGFd~I 118 (201)
+..+++..+..-.-+.|-.--..+.+.+...+.++.+|++|+.+.- | |+-- +...+++-+|.|
T Consensus 370 l~~~l~~~~~~~~~LvlEItE~~~~~~~~~~~~l~~Lr~~G~~ialDDFGtg~ss-------------l~~L~~l~vD~l 436 (518)
T PRK10551 370 VQRLLASLPADHFQIVLEITERDMVQEEEATKLFAWLHSQGIEIAIDDFGTGHSA-------------LIYLERFTLDYL 436 (518)
T ss_pred HHHHHHhCCCCcceEEEEEechHhcCCHHHHHHHHHHHHCCCEEEEECCCCCchh-------------HHHHHhCCCCEE
Confidence 3444444443322344443333344444567888999999998885 4 2321 334467889999
Q ss_pred EecCCccc-CChh-----HHHHHHHHHHHCCCeEccccccccC
Q 028948 119 ELNVGSLE-IPEE-----TLLRYVRLVKSAGLKAKPKFAVMFN 155 (201)
Q Consensus 119 EISdGti~-i~~~-----~r~~lI~~~~~~Gf~v~pE~g~k~~ 155 (201)
-|+-.++. +..+ .-..+|+.+++.|++|..| |+...
T Consensus 437 KID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE-GVEt~ 478 (518)
T PRK10551 437 KIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE-GVETP 478 (518)
T ss_pred EECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE-eCCcH
Confidence 99987774 3333 3356999999999999877 66543
No 331
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.09 E-value=38 Score=30.77 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=24.9
Q ss_pred cCChhHHHHHHHHHHHCCCeEccccccc
Q 028948 126 EIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~pE~g~k 153 (201)
-.+.++..++++.|+++|..|.||+-.-
T Consensus 64 ~yT~~di~elv~yA~~rgI~vIPEId~P 91 (311)
T cd06570 64 YYTQEQIREVVAYARDRGIRVVPEIDVP 91 (311)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEeecCc
Confidence 3789999999999999999999998654
No 332
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=52.98 E-value=83 Score=28.63 Aligned_cols=16 Identities=6% Similarity=-0.053 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhCCcee
Q 028948 71 FIEEVVKRAHQHDVYV 86 (201)
Q Consensus 71 ~L~eKI~l~~~~gV~v 86 (201)
.+|+.++..|+||.++
T Consensus 78 ~~~~l~~~vh~~g~~~ 93 (353)
T cd02930 78 GHRLITDAVHAEGGKI 93 (353)
T ss_pred HHHHHHHHHHHcCCEE
Confidence 4788889999998764
No 333
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.71 E-value=17 Score=31.30 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=39.0
Q ss_pred HHHHHHHhCCc-eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 028948 74 EVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 74 eKI~l~~~~gV-~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~ 142 (201)
+-.+...+++| .|.-+.=.| ..-+..+.+.+.|++.|||. +......+.|+.+++.
T Consensus 7 ~~~~~l~~~~~iaV~r~~~~~--------~a~~i~~al~~~Gi~~iEit-----l~~~~~~~~I~~l~~~ 63 (212)
T PRK05718 7 SIEEILRAGPVVPVIVINKLE--------DAVPLAKALVAGGLPVLEVT-----LRTPAALEAIRLIAKE 63 (212)
T ss_pred HHHHHHHHCCEEEEEEcCCHH--------HHHHHHHHHHHcCCCEEEEe-----cCCccHHHHHHHHHHH
Confidence 34456677777 444453233 33455678889999999998 5556788999999876
No 334
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=52.50 E-value=30 Score=32.65 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=63.3
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcccCChh-
Q 028948 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLEIPEE- 130 (201)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~eyl~~~k~lGFd~IEISdGti~i~~~- 130 (201)
.|+-|=||+||-++++++.|+..++..+++=- ....-.|+.+--+|.. =.+.++.+++.||+. ||-|--++.++
T Consensus 87 ~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~--~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNR--iSlGVQsf~~~~ 162 (416)
T COG0635 87 EVKTIYFGGGTPSLLSPEQLERLLKALRELFN--DLDPDAEITIEANPGTVEAEKFKALKEAGVNR--ISLGVQSFNDEV 162 (416)
T ss_pred eEEEEEECCCccccCCHHHHHHHHHHHHHhcc--cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCE--EEeccccCCHHH
Confidence 48889999999999999999999999987641 0111244444445543 357888899999995 55566666554
Q ss_pred -----------HHHHHHHHHHHCCCeE
Q 028948 131 -----------TLLRYVRLVKSAGLKA 146 (201)
Q Consensus 131 -----------~r~~lI~~~~~~Gf~v 146 (201)
+-...++.+++.||.-
T Consensus 163 lk~lgR~h~~~~~~~a~~~~~~~g~~~ 189 (416)
T COG0635 163 LKALGRIHDEEEAKEAVELARKAGFTS 189 (416)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 4456677788877764
No 335
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=52.36 E-value=1e+02 Score=27.61 Aligned_cols=101 Identities=15% Similarity=0.272 Sum_probs=68.0
Q ss_pred cchhHHHHHHHhhcccc----------cEEEeeCcc------ccccChhHHHHHHHHHHhCCc---eecC-ccHHHHHHH
Q 028948 38 SSHNVLEDIFESMGQFV----------DGLKFSGGS------HSLMPKPFIEEVVKRAHQHDV---YVST-GDWAEHLIR 97 (201)
Q Consensus 38 ~g~~~l~DlLe~ag~yI----------D~lKfg~GT------s~l~p~~~L~eKI~l~~~~gV---~v~~-GtlfE~al~ 97 (201)
+|..+.+.+|-..-.+| -++|++.|- .++.| ++.-|+|+++.|+ +++| ||+--.
T Consensus 90 tgag~sr~~Lg~~~T~vN~LvsPTG~~G~VkISTGp~Ss~~~~~iV~---vetAiaml~dmG~~SiKffPM~Gl~~l--- 163 (236)
T TIGR03581 90 TGVGTSRALLGQADTVINGLVSPTGTPGLVNISTGPLSSQGKEAIVP---IETAIAMLKDMGGSSVKFFPMGGLKHL--- 163 (236)
T ss_pred cchHHHHHHhCCccceEEEeecCCCccceEEeccCcccccCCCceee---HHHHHHHHHHcCCCeeeEeecCCcccH---
Confidence 35556677773333343 578999992 23344 7788999999886 8888 653110
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe-Eccccc
Q 028948 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK-AKPKFA 151 (201)
Q Consensus 98 qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~-v~pE~g 151 (201)
+.+...-+.|.+-||- +| =|--|+.+....+++.+.+.|.+ |.|.+=
T Consensus 164 ---eE~~avA~aca~~g~~-lE---PTGGIdl~Nf~~I~~i~ldaGv~kviPHIY 211 (236)
T TIGR03581 164 ---EEYAAVAKACAKHGFY-LE---PTGGIDLDNFEEIVQIALDAGVEKVIPHVY 211 (236)
T ss_pred ---HHHHHHHHHHHHcCCc-cC---CCCCccHHhHHHHHHHHHHcCCCeeccccc
Confidence 0334445789999995 44 45557888889999999999986 566553
No 336
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=52.32 E-value=24 Score=35.77 Aligned_cols=60 Identities=18% Similarity=0.348 Sum_probs=45.5
Q ss_pred eecCcc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEe----------cCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 85 YVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----------NVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 85 ~v~~Gt-lfE~al~qg~~~~~eyl~~~k~lGFd~IEI----------SdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
..+.|. -.|..-. . ..++=++..|.+||++|++ ..|..++..-|.. ++++|++.||.|+-
T Consensus 16 ~l~gG~y~p~~~p~-~--~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~~D~~-~l~~a~~~Gl~vil 86 (673)
T COG1874 16 LLYGGDYYPERWPR-E--TWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFTWLDEI-FLERAYKAGLYVIL 86 (673)
T ss_pred EEeccccChHHCCH-H--HHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcccchHH-HHHHHHhcCceEEE
Confidence 344453 4444433 2 7788889999999999999 6788888866666 79999999999953
No 337
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=52.30 E-value=61 Score=29.02 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC-----hhHHHH---HHHHH
Q 028948 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP-----EETLLR---YVRLV 139 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~-----~~~r~~---lI~~~ 139 (201)
..+.|+..|+.+|+.||.|+. |. + --.+-++.++++|-|+||+-.|...-. .++..+ .-+.+
T Consensus 111 ~~~~l~~~i~~L~~~gIrVSL--Fi------d--P~~~qi~~A~~~GAd~VELhTG~yA~a~~~~~~~el~~~~~aa~~a 180 (239)
T PRK05265 111 QFDKLKPAIARLKDAGIRVSL--FI------D--PDPEQIEAAAEVGADRIELHTGPYADAKTEAEAAELERIAKAAKLA 180 (239)
T ss_pred CHHHHHHHHHHHHHCCCEEEE--Ee------C--CCHHHHHHHHHhCcCEEEEechhhhcCCCcchHHHHHHHHHHHHHH
Confidence 456799999999999999985 11 2 123456778999999999988876433 222222 33456
Q ss_pred HHCCCeEcc
Q 028948 140 KSAGLKAKP 148 (201)
Q Consensus 140 ~~~Gf~v~p 148 (201)
++.|+.|..
T Consensus 181 ~~lGL~VnA 189 (239)
T PRK05265 181 ASLGLGVNA 189 (239)
T ss_pred HHcCCEEec
Confidence 778888844
No 338
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=52.24 E-value=28 Score=26.06 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
.++++.+++.|...+=+||++. ..+..+.+++++.||.+.+
T Consensus 20 ~e~l~~L~~~g~~~~~lTNns~----~s~~~~~~~L~~~Gi~~~~ 60 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTNNSS----RSREEYAKKLKKLGIPVDE 60 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES-SS----S-HHHHHHHHHHTTTT--G
T ss_pred HHHHHHHHHcCCCEEEEeCCCC----CCHHHHHHHHHhcCcCCCc
Confidence 4455555555555555555532 2233444444555555433
No 339
>PRK12928 lipoyl synthase; Provisional
Probab=51.96 E-value=53 Score=29.53 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=13.5
Q ss_pred CcccCChhHHHHHHHHHHHCCCeE
Q 028948 123 GSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
|+ .=+++++.+.++.+++.++.-
T Consensus 213 G~-GET~ed~~etl~~Lrel~~d~ 235 (290)
T PRK12928 213 GL-GETEDEVIETLRDLRAVGCDR 235 (290)
T ss_pred eC-CCCHHHHHHHHHHHHhcCCCE
Confidence 44 446666666666666666543
No 340
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=51.96 E-value=26 Score=30.67 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (201)
..+..++-.|+.|||.|-||.+-=.|..+.-+++|+...++-|.+.
T Consensus 79 VaeRL~ei~K~~g~d~vRiSG~EP~l~~EHvlevIeLl~~~tFvlE 124 (228)
T COG5014 79 VAERLLEISKKRGCDLVRISGAEPILGREHVLEVIELLVNNTFVLE 124 (228)
T ss_pred HHHHHHHHHHhcCCcEEEeeCCCccccHHHHHHHHHhccCceEEEE
Confidence 4566778889999999999999999999999999999988877763
No 341
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=51.68 E-value=28 Score=32.24 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
.-.++.+.+.++||+.||+ |+-.++++++ +.++.+.+.|+.+
T Consensus 27 ~k~~ia~~L~~~GV~~IE~--G~p~~~~~~~-e~i~~i~~~~~~~ 68 (378)
T PRK11858 27 EKLAIARMLDEIGVDQIEA--GFPAVSEDEK-EAIKAIAKLGLNA 68 (378)
T ss_pred HHHHHHHHHHHhCCCEEEE--eCCCcChHHH-HHHHHHHhcCCCe
Confidence 3456777788889999997 5666777775 5666776666654
No 342
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=51.64 E-value=1.7e+02 Score=25.74 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=53.0
Q ss_pred HHHHHHHHHhC-CceecCcc----HHHHHHHhCCch--------HHHHHHHHHHcCCCEEEecCCcccCC----------
Q 028948 72 IEEVVKRAHQH-DVYVSTGD----WAEHLIRNGPSA--------FKEYVEDCKQVGFDTIELNVGSLEIP---------- 128 (201)
Q Consensus 72 L~eKI~l~~~~-gV~v~~Gt----lfE~al~qg~~~--------~~eyl~~~k~lGFd~IEISdGti~i~---------- 128 (201)
|+..++.+++. +++++--| -+|.|+..|.+- .++.++.+++.|..+|=+.+..+.-+
T Consensus 63 l~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~ 142 (257)
T TIGR01496 63 VVPVIKALRDQPDVPISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDV 142 (257)
T ss_pred HHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccH
Confidence 88888999887 99998643 788888776421 45689999999999998876432211
Q ss_pred hhH----HHHHHHHHHHCCCe
Q 028948 129 EET----LLRYVRLVKSAGLK 145 (201)
Q Consensus 129 ~~~----r~~lI~~~~~~Gf~ 145 (201)
.++ ..+.|+++.+.|++
T Consensus 143 ~~~~~~~~~~~i~~~~~~Gi~ 163 (257)
T TIGR01496 143 VEEVLRFLEARAEELVAAGVA 163 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 122 34567778999984
No 343
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=51.42 E-value=40 Score=30.03 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=46.4
Q ss_pred cccChhHHHHHHHHHHhCCceecC----c--cH-HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHH
Q 028948 65 SLMPKPFIEEVVKRAHQHDVYVST----G--DW-AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVR 137 (201)
Q Consensus 65 ~l~p~~~L~eKI~l~~~~gV~v~~----G--tl-fE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~ 137 (201)
-+++.+.|++-|+....+++.+.- . +| +|.- .+.+.-+ .|-. ..-..+.-..+.++-.++++
T Consensus 11 ~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~------~~p~l~~----~g~~-~~~~~~~~~yT~~di~elv~ 79 (303)
T cd02742 11 HFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESK------KFPELAE----KGGQ-INPRSPGGFYTYAQLKDIIE 79 (303)
T ss_pred cCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeC------ccchhhh----hccc-ccCCCCCCeECHHHHHHHHH
Confidence 356778888888888888875541 1 12 2211 1111110 1100 00012233688999999999
Q ss_pred HHHHCCCeEccccccc
Q 028948 138 LVKSAGLKAKPKFAVM 153 (201)
Q Consensus 138 ~~~~~Gf~v~pE~g~k 153 (201)
.|+++|..|.||+-.-
T Consensus 80 yA~~rgI~viPEiD~P 95 (303)
T cd02742 80 YAAARGIEVIPEIDMP 95 (303)
T ss_pred HHHHcCCEEEEeccch
Confidence 9999999999998643
No 344
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=51.39 E-value=34 Score=31.14 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHcCCCEEEec----------CCcccCChhHHHHHHHHHHHCCCeE
Q 028948 102 AFKEYVEDCKQVGFDTIELN----------VGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEIS----------dGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
..++.++.+|++||++|.|- .|..+ -+..-++|++++++|++|
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~yd--F~~lD~~l~~a~~~Gi~v 63 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYD--FSWLDRVLDLAAKHGIKV 63 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB-----HHHHHHHHHHHCTT-EE
T ss_pred HHHHHHHHHHHcCCCEEEEEEechhhccCCCCeee--cHHHHHHHHHHHhccCeE
Confidence 55666666666666666542 22222 233455666666666666
No 345
>PRK05985 cytosine deaminase; Provisional
Probab=51.17 E-value=1.3e+02 Score=27.34 Aligned_cols=119 Identities=19% Similarity=0.184 Sum_probs=63.9
Q ss_pred CCceeEec-----CCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHH
Q 028948 24 FGVTEMRS-----PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIR 97 (201)
Q Consensus 24 ~GlTmV~D-----kG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~ 97 (201)
.|.|-|+| |+..+. +...+.++.+.....||.==..+...-+++..-..+.++-+.+.|..+..| +... ...
T Consensus 110 ~G~t~vr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~~~~gg~~p~~-~~~ 187 (391)
T PRK05985 110 AGTTAMRSHVDVDPDAGLR-HLEAVLAARETLRGLIDIQIVAFPQSGVLSRPGTAELLDAALRAGADVVGGLDPAG-IDG 187 (391)
T ss_pred cCcceEEeeEccCCCcccc-hHHHHHHHHHHhhCcccEEEEeccCccccCCcCHHHHHHHHHHcCCCEEeCCCCCC-cCC
Confidence 59998755 444333 455566666666665553222223333444322345566555556543333 2221 111
Q ss_pred hCCchHHHHHHHHHHcCCCE-EEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 98 NGPSAFKEYVEDCKQVGFDT-IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 98 qg~~~~~eyl~~~k~lGFd~-IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
..+..+++.++.++++|... +=+... -+.......++++.+.+.|+.
T Consensus 188 ~~~~~l~~~~~~A~~~g~~i~~Hv~e~-~d~~~~~~~~~~e~~~~~g~~ 235 (391)
T PRK05985 188 DPEGQLDIVFGLAERHGVGIDIHLHEP-GELGAFQLERIAARTRALGMQ 235 (391)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEeeCCC-CCccHHHHHHHHHHHHHhCCC
Confidence 11236888889999999753 223322 233455666788888888764
No 346
>PRK15447 putative protease; Provisional
Probab=51.13 E-value=46 Score=29.83 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHCCCeE
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti----~i~~~~r~~lI~~~~~~Gf~v 146 (201)
.++.|...+.+.|.|+|=+..... .++.++..++|+++++.|-+|
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkv 64 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEV 64 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEE
Confidence 788888888888888888875442 378888888888888888776
No 347
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=51.00 E-value=92 Score=28.64 Aligned_cols=117 Identities=8% Similarity=0.002 Sum_probs=75.3
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-C-
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P- 100 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~- 100 (201)
|.-++-|-+..-.+..++.+++..-.+.+..+-.-=|.-.-|..+-.++++.++++|| .++.| ++-+..+.. | .
T Consensus 58 tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~ 137 (380)
T PRK09057 58 SIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLH 137 (380)
T ss_pred eEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 6666666544437889999999998887665432224445677777899999999999 88889 777766644 2 1
Q ss_pred --chHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHHCCC
Q 028948 101 --SAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 101 --~~~~eyl~~~k~lGFd~IEI--SdGti~i~~~~r~~lI~~~~~~Gf 144 (201)
+.+.+-++.+++. |..|-+ --|.=.=+.+++.+-++.+.+.+.
T Consensus 138 ~~~~~~~ai~~~~~~-~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p 184 (380)
T PRK09057 138 SVAEALAAIDLAREI-FPRVSFDLIYARPGQTLAAWRAELKEALSLAA 184 (380)
T ss_pred CHHHHHHHHHHHHHh-CccEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 2345566667777 433222 223223334446666777776653
No 348
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=50.96 E-value=16 Score=33.50 Aligned_cols=68 Identities=18% Similarity=0.345 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhC-----CceecCccHHHHHHHhCCchHHH---HHHHHHHcCCCEEEecCCcccC-----ChhHHHHHH
Q 028948 70 PFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKE---YVEDCKQVGFDTIELNVGSLEI-----PEETLLRYV 136 (201)
Q Consensus 70 ~~L~eKI~l~~~~-----gV~v~~GtlfE~al~qg~~~~~e---yl~~~k~lGFd~IEISdGti~i-----~~~~r~~lI 136 (201)
.++.|.|+-.++. +|++++-.+.+- | -..++ +.+.+.+.|+|.|+||.|+... ++.-...+.
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~----G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~ 267 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPG----G-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFA 267 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCC----C-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHH
Confidence 4566666666665 345554333221 2 13444 4455555699999999998532 122234566
Q ss_pred HHHHHC
Q 028948 137 RLVKSA 142 (201)
Q Consensus 137 ~~~~~~ 142 (201)
+.+++.
T Consensus 268 ~~ik~~ 273 (337)
T PRK13523 268 EHIREH 273 (337)
T ss_pred HHHHhh
Confidence 666654
No 349
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=50.82 E-value=1e+02 Score=27.86 Aligned_cols=53 Identities=15% Similarity=0.309 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHCCCeEccccccccCCC
Q 028948 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKS 157 (201)
Q Consensus 105 eyl~~~k~lGFd~IEISdGti~i~~~~--r~~lI~~~~~~Gf~v~pE~g~k~~~~ 157 (201)
+.+..|-++||+.|=|.--.+++.+-- =.++++.++..|.-|..|+|.=-+..
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e 137 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEE 137 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCcc
Confidence 566677899999999976554433321 23788899999999999999653333
No 350
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=50.58 E-value=1.7e+02 Score=25.51 Aligned_cols=92 Identities=21% Similarity=0.328 Sum_probs=56.9
Q ss_pred chhHHHHHHH-hhcccccEEEeeC-c-----cc----cccChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHH
Q 028948 39 SHNVLEDIFE-SMGQFVDGLKFSG-G-----SH----SLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKE 105 (201)
Q Consensus 39 g~~~l~DlLe-~ag~yID~lKfg~-G-----Ts----~l~p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~e 105 (201)
++.++++.++ ....-.|++|+-. | +. ..++.+.+++.++.+|++|+++.. .+- .
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~-------------~ 184 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGA-------------E 184 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCH-------------H
Confidence 3444333333 3445789999753 1 01 246778899999999999998875 221 1
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc
Q 028948 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 106 yl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
-++.+-+.|.+.||=... +++ +.++++++.|..+.|-.
T Consensus 185 ~i~~~l~~G~~~i~H~~~---~~~----~~~~~l~~~g~~~~~t~ 222 (342)
T cd01299 185 AIRRAIRAGVDTIEHGFL---IDD----ETIELMKEKGIFLVPTL 222 (342)
T ss_pred HHHHHHHcCCCEEeecCC---CCH----HHHHHHHHCCcEEeCcH
Confidence 122344568888875432 333 45777888888875543
No 351
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=50.37 E-value=37 Score=32.02 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=42.3
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceec
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS 87 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (201)
+|+|.+.+.+-.+ -..+++.+++... +|.+|.|+ |.+.+.+..-++.++++|+++.
T Consensus 46 ~~~~~i~~~~~~~--~~~q~~a~~~d~~--~~~ik~G~----l~~~e~~~~i~~~~k~~g~~vv 101 (448)
T PRK08573 46 YEVRAIHDLPPEV--VAAQIEAVWEDMG--IDAAKTGM----LSNREIIEAVAKTVSKYGFPLV 101 (448)
T ss_pred CCceEEEECCHHH--HHHHHHHHHhcCC--CCEEEECC----cCCHHHHHHHHHHHHHcCCCEE
Confidence 5888998888522 1245666666555 68999997 6688999999999999998554
No 352
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=50.33 E-value=32 Score=28.55 Aligned_cols=43 Identities=30% Similarity=0.421 Sum_probs=27.7
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHC
Q 028948 100 PSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSA 142 (201)
Q Consensus 100 ~~~~~eyl~~~k~lGFd~IEISdGti-------------~i~~~~r~~lI~~~~~~ 142 (201)
++.+.+..+.+++.|||.|||+-|+- .=..+.-.++|+.+++.
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh
Confidence 34555666677888999999997651 12333345667776654
No 353
>PRK15108 biotin synthase; Provisional
Probab=50.28 E-value=29 Score=31.81 Aligned_cols=73 Identities=21% Similarity=0.391 Sum_probs=46.1
Q ss_pred cccChhHHHHHHHHHHhCCc-eecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 028948 65 SLMPKPFIEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 65 ~l~p~~~L~eKI~l~~~~gV-~v~~G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~ 142 (201)
.+++.+.+.++...+.+.|+ .++.| +|.+- ....-+.+.+-++.+|+.|...+ +|.|. ++.+ .+++.++.
T Consensus 74 ~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p-~~~~~e~i~~~i~~ik~~~i~v~-~s~G~--ls~e----~l~~LkeA 145 (345)
T PRK15108 74 RLMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLETC-MTLGT--LSES----QAQRLANA 145 (345)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEEecCCCC-CcchHHHHHHHHHHHHhCCCEEE-EeCCc--CCHH----HHHHHHHc
Confidence 34666778888888999999 45444 45321 11111246666777788887655 88885 4443 34566788
Q ss_pred CCe
Q 028948 143 GLK 145 (201)
Q Consensus 143 Gf~ 145 (201)
|+.
T Consensus 146 Gld 148 (345)
T PRK15108 146 GLD 148 (345)
T ss_pred CCC
Confidence 887
No 354
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=49.73 E-value=58 Score=30.43 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCEEEecCCc---------ccCChhHHHHHHHHHHHCCCeE
Q 028948 104 KEYVEDCKQVGFDTIELNVGS---------LEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGt---------i~i~~~~r~~lI~~~~~~Gf~v 146 (201)
++..+.+++.|.+.+.-+--| .+-+-++|.+-++.+++.|++|
T Consensus 144 ~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~v 195 (335)
T COG0502 144 EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEV 195 (335)
T ss_pred HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCcc
Confidence 567778899999988873333 3678899999999999999999
No 355
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=49.71 E-value=23 Score=33.79 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-CChh----HHHHHHHHHHHCC
Q 028948 72 IEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-IPEE----TLLRYVRLVKSAG 143 (201)
Q Consensus 72 L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~-i~~~----~r~~lI~~~~~~G 143 (201)
+++-++++|+||++++. | |+..- . +.=++.+-.+|+|-|=.|-.-+= =|.. -|.++|+++++++
T Consensus 176 ~~~l~~ia~~~~lpvivD~aSg~~v~----~----e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq~~~ 247 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLASGALVD----K----EPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHP 247 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccc----c----ccchhHHHhcCCCEEEEecchhcCCCccceEechHHHHHHHHhhh
Confidence 67799999999999987 5 56522 1 11134457899999999965441 1111 2457788888886
Q ss_pred CeE
Q 028948 144 LKA 146 (201)
Q Consensus 144 f~v 146 (201)
++-
T Consensus 248 l~R 250 (395)
T COG1921 248 LKR 250 (395)
T ss_pred hhh
Confidence 553
No 356
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=49.67 E-value=32 Score=29.81 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (201)
...++++.+.++|++.||+. +-.+++.++ +.++.+.+.+.
T Consensus 21 ~k~~i~~~L~~~Gv~~iE~g--~p~~~~~~~-e~~~~l~~~~~ 60 (259)
T cd07939 21 EKLAIARALDEAGVDEIEVG--IPAMGEEER-EAIRAIVALGL 60 (259)
T ss_pred HHHHHHHHHHHcCCCEEEEe--cCCCCHHHH-HHHHHHHhcCC
Confidence 45678888888899999983 444555554 45666666544
No 357
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=49.61 E-value=36 Score=38.12 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------------------ChhHHHHHHHHHHHCCCeEcccccc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------------------PEETLLRYVRLVKSAGLKAKPKFAV 152 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i--------------------~~~~r~~lI~~~~~~Gf~v~pE~g~ 152 (201)
.+.+-+.+.++|||++|.+|-=+-.- +.++..++|+.++++|++|.-.+=.
T Consensus 759 ~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 759 DAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred HHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 46778889999999999998655421 4678999999999999999554433
No 358
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=49.49 E-value=1.5e+02 Score=26.56 Aligned_cols=114 Identities=15% Similarity=0.291 Sum_probs=67.7
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHH---hCCc--eecCc--cHHHHHHHh
Q 028948 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAH---QHDV--YVSTG--DWAEHLIRN 98 (201)
Q Consensus 26 lTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~---~~gV--~v~~G--tlfE~al~q 98 (201)
-|.-+..|-+.......++++++.+-.+-+.+-++.+|. |..+-++++++++ +.|+ .++.| +.-+..+..
T Consensus 79 ~~iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~tr---pd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~ 155 (302)
T TIGR01212 79 FIAYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTR---PDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKK 155 (302)
T ss_pred EEEEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEec---CCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHH
Confidence 345565554443478899999999888767777766653 4444444555555 4576 47777 554444432
Q ss_pred ---C--CchHHHHHHHHHHcCCCEEEecCCcc-cCC---hhHHHHHHHHHHHCCCe
Q 028948 99 ---G--PSAFKEYVEDCKQVGFDTIELNVGSL-EIP---EETLLRYVRLVKSAGLK 145 (201)
Q Consensus 99 ---g--~~~~~eyl~~~k~lGFd~IEISdGti-~i~---~~~r~~lI~~~~~~Gf~ 145 (201)
+ .+.+.+-++.+++.||. ++...| -+| .++..+.++.+.+.+..
T Consensus 156 i~Rg~t~~~~~~ai~~l~~~gi~---v~~~lI~GlPget~e~~~~t~~~l~~l~~d 208 (302)
T TIGR01212 156 INRGHDFACYVDAVKRARKRGIK---VCSHVILGLPGEDREEMMETAKIVSLLDVD 208 (302)
T ss_pred HcCcChHHHHHHHHHHHHHcCCE---EEEeEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 2 12355566677788875 444433 444 45555566666666544
No 359
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=49.42 E-value=51 Score=28.29 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=46.0
Q ss_pred EEEeeCccccccChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc----ccCCh
Q 028948 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS----LEIPE 129 (201)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGt----i~i~~ 129 (201)
+|=|++|=..+++ +.+.+-.+.+|+.|+.++- -|.+.. +.+++.+..+...-||.--+++.. ...+.
T Consensus 41 GVt~SGGEPllq~-~fl~~l~~~~k~~gi~~~leTnG~~~~------~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~ 113 (213)
T PRK10076 41 GVTLSGGEVLMQA-EFATRFLQRLRLWGVSCAIETAGDAPA------SKLLPLAKLCDEVLFDLKIMDATQARDVVKMNL 113 (213)
T ss_pred EEEEeCchHHcCH-HHHHHHHHHHHHcCCCEEEECCCCCCH------HHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCH
Confidence 7778877777765 5678888888888886653 222211 123333344444444443333211 12344
Q ss_pred hHHHHHHHHHHHCCCeE
Q 028948 130 ETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v 146 (201)
+.-++-++.+.+.|..+
T Consensus 114 ~~il~nl~~l~~~g~~v 130 (213)
T PRK10076 114 PRVLENLRLLVSEGVNV 130 (213)
T ss_pred HHHHHHHHHHHhCCCcE
Confidence 55556677777777544
No 360
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.33 E-value=23 Score=30.52 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 028948 71 FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (201)
Q Consensus 71 ~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGt 124 (201)
.-.+-++.+++++|...|| |.-|+. .+.++|++.|-+-...
T Consensus 96 ~~~~vi~~a~~~~i~~iPG~~TptEi~-------------~a~~~Ga~~vKlFPa~ 138 (212)
T PRK05718 96 LTPPLLKAAQEGPIPLIPGVSTPSELM-------------LGMELGLRTFKFFPAE 138 (212)
T ss_pred CCHHHHHHHHHcCCCEeCCCCCHHHHH-------------HHHHCCCCEEEEccch
Confidence 3456777888888888887 667733 3467999999995543
No 361
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=49.27 E-value=34 Score=32.76 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=8.4
Q ss_pred HHHHHHHHHHcCCCEEEe
Q 028948 103 FKEYVEDCKQVGFDTIEL 120 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEI 120 (201)
.+++++.+++.|.+.+=|
T Consensus 55 Y~~l~~~vr~~GLk~~~v 72 (402)
T PF01373_consen 55 YRELFEMVRDAGLKLQVV 72 (402)
T ss_dssp HHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 344555555555554444
No 362
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=49.10 E-value=1e+02 Score=28.54 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=75.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-----
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN----- 98 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q----- 98 (201)
|.-++=|=|..-.+..++.+++..-.+++...-.-=|.-..|..+-.++++.++++|| .++.| ++-+..+..
T Consensus 76 siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~ 155 (394)
T PRK08898 76 TVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIH 155 (394)
T ss_pred EEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCC
Confidence 5556555544337889999999998888665322334456677788899999999999 78888 677777653
Q ss_pred CCchHHHHHHHHHHcCCCEEE--ecCCcccCChhHHHHHHHHHHHCCC
Q 028948 99 GPSAFKEYVEDCKQVGFDTIE--LNVGSLEIPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 99 g~~~~~eyl~~~k~lGFd~IE--ISdGti~i~~~~r~~lI~~~~~~Gf 144 (201)
....+.+-++.+++. |..|- +--|.=.=+.+++.+-++.+.+.+.
T Consensus 156 ~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p 202 (394)
T PRK08898 156 DGAEARAAIEIAAKH-FDNFNLDLMYALPGQTLDEALADVETALAFGP 202 (394)
T ss_pred CHHHHHHHHHHHHHh-CCceEEEEEcCCCCCCHHHHHHHHHHHHhcCC
Confidence 123344555666765 54332 2222223355566666777777665
No 363
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=49.08 E-value=1e+02 Score=27.96 Aligned_cols=48 Identities=6% Similarity=0.138 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHCCCeEccccccc
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~~~r----~~lI~~~~~~Gf~v~pE~g~k 153 (201)
-+.+..|-++||+.|=+.--. +|.++= .++++.|+..|.-|-.|+|.=
T Consensus 87 ~e~i~~Ai~~GftSVM~DgS~--l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~v 138 (284)
T PRK09195 87 FDDIAQKVRSGVRSVMIDGSH--LPFAQNISLVKEVVDFCHRFDVSVEAELGRL 138 (284)
T ss_pred HHHHHHHHHcCCCEEEeCCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 366778889999999997555 444442 367888899999999999865
No 364
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=48.63 E-value=41 Score=30.44 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=56.6
Q ss_pred EEEeeCccccccChhHHHHHHHHHHhC-Cceec--C-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-C--C
Q 028948 56 GLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-I--P 128 (201)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~--~-GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~-i--~ 128 (201)
..|-|.|++.+.+++.+++.++-.++. ++++. . .||-+ ......++.+.+.+.|.+.|.|...+.+ + .
T Consensus 105 v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-----~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G 179 (321)
T PRK10415 105 VNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-----EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG 179 (321)
T ss_pred HcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-----CcchHHHHHHHHHHhCCCEEEEecCccccccCC
Confidence 356777888898899999999988764 44444 2 35643 1125678888899999999999987642 1 2
Q ss_pred hhHHHHHHHHHHHC
Q 028948 129 EETLLRYVRLVKSA 142 (201)
Q Consensus 129 ~~~r~~lI~~~~~~ 142 (201)
..++ ++|+++++.
T Consensus 180 ~a~~-~~i~~ik~~ 192 (321)
T PRK10415 180 EAEY-DSIRAVKQK 192 (321)
T ss_pred CcCh-HHHHHHHHh
Confidence 2344 788888774
No 365
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=48.62 E-value=52 Score=29.78 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHCCCeEccccccccC
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFN 155 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~~~r----~~lI~~~~~~Gf~v~pE~g~k~~ 155 (201)
-+.+..|-++||+.|=+.--. +|.++= .++++.|+..|.-|-.|+|.=-+
T Consensus 87 ~e~i~~ai~~GftSVMiDgS~--lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg 140 (284)
T PRK12737 87 LDDIKKKVRAGIRSVMIDGSH--LSFEENIAIVKEVVEFCHRYDASVEAELGRLGG 140 (284)
T ss_pred HHHHHHHHHcCCCeEEecCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC
Confidence 467788899999999987555 454442 36788889999999999986433
No 366
>PRK09248 putative hydrolase; Validated
Probab=48.60 E-value=46 Score=28.44 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc---CC-hhHHHHHHHHHHHCCCeE
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLE---IP-EETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~---i~-~~~r~~lI~~~~~~Gf~v 146 (201)
.+++.++.+++.|. +|||+.+++. .+ ...-.++++.+++.|+.+
T Consensus 141 ~~~~~~~~~~~~g~-~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~ 188 (246)
T PRK09248 141 DIEAVVKAAKEHNV-ALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWV 188 (246)
T ss_pred cHHHHHHHHHHhCC-EEEEECCCCccCCCCCcChHHHHHHHHHHcCCeE
Confidence 46788999999999 9999999872 11 113346889999999876
No 367
>PRK13404 dihydropyrimidinase; Provisional
Probab=48.54 E-value=1.7e+02 Score=27.71 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=47.1
Q ss_pred cChhHHHHHHHHHHhCCceecC---c-cHHH----HHHHhC-----------C-----chHHHHHHHHHHcCCCEEEecC
Q 028948 67 MPKPFIEEVVKRAHQHDVYVST---G-DWAE----HLIRNG-----------P-----SAFKEYVEDCKQVGFDTIELNV 122 (201)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~---G-tlfE----~al~qg-----------~-----~~~~eyl~~~k~lGFd~IEISd 122 (201)
++.+.+++-++.+|++|++|.. . .+++ .+...| | ..+.+.++.+++.|...-
T Consensus 163 ~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~h---- 238 (477)
T PRK13404 163 LDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPIL---- 238 (477)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEE----
Confidence 4445677777777777766643 1 2332 112111 0 135555666666666541
Q ss_pred CcccCChhHHHHHHHHHHHCCCeEccccc
Q 028948 123 GSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (201)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~Gf~v~pE~g 151 (201)
..-++...-.++|+.+++.|+.+..|+-
T Consensus 239 -i~Hvs~~~~~~~i~~~k~~g~~vt~e~~ 266 (477)
T PRK13404 239 -IVHVSGREAAEQIRRARGRGLKIFAETC 266 (477)
T ss_pred -EEECCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 2345566777999999999998876643
No 368
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=48.38 E-value=1.6e+02 Score=25.32 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=69.9
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCce---------------ecCc
Q 028948 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---------------VSTG 89 (201)
Q Consensus 25 GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~---------------v~~G 89 (201)
.++.+.+=|+ . ....++.+++ +| .|.+ -.||..+-+.+.+++-.+.+.+-.|. |.+-
T Consensus 74 ~ipv~~~GGi--~-s~~~~~~~l~-~G--a~~V--iigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~ 145 (253)
T PRK02083 74 FIPLTVGGGI--R-SVEDARRLLR-AG--ADKV--SINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTH 145 (253)
T ss_pred CCCEEeeCCC--C-CHHHHHHHHH-cC--CCEE--EEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEc
Confidence 4555555554 3 4555666666 33 4444 66788888888888766655221122 2232
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHHC-CCeEcccccccc
Q 028948 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMF 154 (201)
Q Consensus 90 tlfE~al~qg~~~~~eyl~~~k~lGFd~IEI----SdGti~i~~~~r~~lI~~~~~~-Gf~v~pE~g~k~ 154 (201)
+|.+. ......++.+++.++|++.|=+ .+|+..-++ ..+|+.+++. ...+...=|+..
T Consensus 146 ~~~~~----~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~~~ipvia~GGv~s 208 (253)
T PRK02083 146 GGRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD---LELTRAVSDAVNVPVIASGGAGN 208 (253)
T ss_pred CCcee----cCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC---HHHHHHHHhhCCCCEEEECCCCC
Confidence 35432 1226778999999999999888 457777664 3556655554 566666655553
No 369
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=48.38 E-value=1.3e+02 Score=25.01 Aligned_cols=91 Identities=21% Similarity=0.336 Sum_probs=59.1
Q ss_pred HHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCcc--HHHH----HHHhCCchHHHHHHHHHHcCCC----
Q 028948 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAEH----LIRNGPSAFKEYVEDCKQVGFD---- 116 (201)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gt--lfE~----al~qg~~~~~eyl~~~k~lGFd---- 116 (201)
+..+|-=.=+||.+-||..+-|. ..+-++-|+++|+++ |. |+.. .-.+. ..+-|++.++..|+.
T Consensus 17 ~~~~g~~fviiKateG~~~~d~~--~~~n~~~A~~aGl~v--G~Yhf~~~~~~~~~a~~--eA~~f~~~~~~~~l~~~~~ 90 (196)
T cd06415 17 YGQAGAKFAIVKISEGTNYVNPK--ASAQVSSAIANGKMT--GGYHFARFGGSVSQAKY--EADYFLNSAQQAGLPKGSY 90 (196)
T ss_pred HHhCCCcEEEEEEcCCCccCCcc--HHHHHHHHHHCCCee--EEEEEEecCCCHHHHHH--HHHHHHHHhhhcCCCCCCE
Confidence 55566556689999999988775 999999999999854 32 2211 11111 345588888887764
Q ss_pred -E--EEecCCcccCChhH----HHHHHHHHHHCCCeE
Q 028948 117 -T--IELNVGSLEIPEET----LLRYVRLVKSAGLKA 146 (201)
Q Consensus 117 -~--IEISdGti~i~~~~----r~~lI~~~~~~Gf~v 146 (201)
+ ||-+++. +.+. -..+++++++.|.++
T Consensus 91 ~~lDvE~~~~~---~~~~~~~~~~~f~~~v~~~G~~~ 124 (196)
T cd06415 91 LALDYEQGSGN---SKAANTSAILAFMDTIKDAGYKP 124 (196)
T ss_pred EEEEEecCCCC---CHHHHHHHHHHHHHHHHHhCCCc
Confidence 3 4544432 3333 345667777788876
No 370
>PRK06852 aldolase; Validated
Probab=48.29 E-value=1e+02 Score=28.31 Aligned_cols=87 Identities=9% Similarity=0.054 Sum_probs=55.6
Q ss_pred EEEeeCcccccc-----ChhHHHHHHHHHHhCC-----------ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 028948 56 GLKFSGGSHSLM-----PKPFIEEVVKRAHQHD-----------VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (201)
Q Consensus 56 ~lKfg~GTs~l~-----p~~~L~eKI~l~~~~g-----------V~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IE 119 (201)
++|+..+|+... |...+---++-+-+.| +.+|+|.=.|.--.+ .+-+-.++|+++|+-.|-
T Consensus 96 Ilkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~---~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 96 LVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLS---EAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred EEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCcEEE
Confidence 578887776654 2112333344455544 688899767755454 577888999999999885
Q ss_pred --------ecCCcccCChhHHHHHHHHHHHCC---CeEcc
Q 028948 120 --------LNVGSLEIPEETLLRYVRLVKSAG---LKAKP 148 (201)
Q Consensus 120 --------ISdGti~i~~~~r~~lI~~~~~~G---f~v~p 148 (201)
|+|.. ..+.-..+.|.+.+.| .|+.+
T Consensus 173 ~~yprG~~i~~~~---~~~~ia~aaRiaaELGADIVKv~y 209 (304)
T PRK06852 173 WIYPRGKAVKDEK---DPHLIAGAAGVAACLGADFVKVNY 209 (304)
T ss_pred EeeccCcccCCCc---cHHHHHHHHHHHHHHcCCEEEecC
Confidence 33322 3345666677777777 55544
No 371
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=48.20 E-value=31 Score=30.06 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~ 142 (201)
...++++.+.++||+.||+ |+...+++++ +.++.+.+.
T Consensus 21 ~k~~i~~~L~~~Gv~~iEv--g~~~~~~~~~-~~~~~l~~~ 58 (268)
T cd07940 21 EKLEIARQLDELGVDVIEA--GFPAASPGDF-EAVKRIARE 58 (268)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCCCCHHHH-HHHHHHHHh
Confidence 5678999999999999999 5666666676 556666553
No 372
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=48.18 E-value=36 Score=35.30 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE-----E-----------------EecCC
Q 028948 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT-----I-----------------ELNVG 123 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~eyl~~~k~lGFd~-----I-----------------EISdG 123 (201)
+++-.++-|+.+|++||.+. +|+=.+.|..= |+++|+.. + +=.+-
T Consensus 580 lr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~i-----------A~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~V 648 (941)
T TIGR01517 580 LRPGVREAVQECQRAGITVRMVTGDNIDTAKAI-----------ARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRV 648 (941)
T ss_pred CchhHHHHHHHHHHCCCEEEEECCCChHHHHHH-----------HHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeE
Confidence 44568899999999999665 68655544432 35566531 1 11134
Q ss_pred cccCChhHHHHHHHHHHHCCCeE
Q 028948 124 SLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+-.+++++|.++|+..++.|-+|
T Consensus 649 far~sPe~K~~iV~~lq~~g~vV 671 (941)
T TIGR01517 649 LARSSPLDKQLLVLMLKDMGEVV 671 (941)
T ss_pred EEECCHHHHHHHHHHHHHCCCEE
Confidence 56899999999999999999876
No 373
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=48.15 E-value=50 Score=26.77 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=37.5
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCce--ecCcc
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VSTGD 90 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~--v~~Gt 90 (201)
....+.+.+....++++.|=|.+|= +.+ +.|.+-++.+|++|+. +.||+
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE--l~~-~~l~~ll~~lk~~Gl~i~l~Tg~ 97 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE--WNR-EALLSLLKIFKEKGLKTCLYTGL 97 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh--cCH-HHHHHHHHHHHHCCCCEEEECCC
Confidence 4556777777777888999999999 444 3599999999998874 45674
No 374
>PRK07328 histidinol-phosphatase; Provisional
Probab=48.09 E-value=21 Score=31.08 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCc--eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh--HHHHHHHHHHHCCCeE
Q 028948 71 FIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGLKA 146 (201)
Q Consensus 71 ~L~eKI~l~~~~gV--~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~--~r~~lI~~~~~~Gf~v 146 (201)
.+++-++.+.++|+ .+.+++|---.-..- --.++++.|+++|.. |=|+...-....= ...+..+.+++.||+-
T Consensus 178 ~~~~il~~~~~~g~~lEiNt~~~r~~~~~~y--p~~~il~~~~~~g~~-itigSDAH~~~~vg~~~~~a~~~l~~~G~~~ 254 (269)
T PRK07328 178 LYEEALDVIAAAGLALEVNTAGLRKPVGEIY--PSPALLRACRERGIP-VVLGSDAHRPEEVGFGFAEALALLKEVGYTE 254 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEchhhcCCCCCCC--CCHHHHHHHHHcCCC-EEEeCCCCCHHHHhccHHHHHHHHHHcCCcE
Confidence 45666777777776 344444321100001 134677777777765 4444443322221 2344666666777754
No 375
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=47.91 E-value=13 Score=33.91 Aligned_cols=85 Identities=15% Similarity=0.303 Sum_probs=61.3
Q ss_pred CCCCCCceeEe-------cCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHH
Q 028948 20 KPRRFGVTEMR-------SPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWA 92 (201)
Q Consensus 20 KPR~~GlTmV~-------DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gtlf 92 (201)
+|--+|+|.+- |+..++ ...++.++..|-.-|-++ .=.+++-+++++.++.+.+.+|+||-
T Consensus 112 ~~~~~g~Tr~~vy~qPp~~~~p~I---KE~vR~~I~~A~kVIAIV-----MD~FTD~dIf~DLleAa~kR~VpVYi---- 179 (284)
T PF07894_consen 112 TPSYKGVTRATVYFQPPKDGQPHI---KEVVRRMIQQAQKVIAIV-----MDVFTDVDIFCDLLEAANKRGVPVYI---- 179 (284)
T ss_pred CCcccCCceEEEEeCCCCCCCCCH---HHHHHHHHHHhcceeEEE-----eeccccHHHHHHHHHHHHhcCCcEEE----
Confidence 55556666553 333311 134577788888877665 33578899999999999999999994
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 028948 93 EHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (201)
Q Consensus 93 E~al~qg~~~~~eyl~~~k~lGFd~IEI 120 (201)
.|-|. .+..|++.|.+++++.--+
T Consensus 180 --LLD~~--~~~~Fl~Mc~~~~v~~~~~ 203 (284)
T PF07894_consen 180 --LLDEQ--NLPHFLEMCEKLGVNLQHL 203 (284)
T ss_pred --Eechh--cChHHHHHHHHCCCChhhc
Confidence 44555 8999999999999875433
No 376
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=47.91 E-value=68 Score=28.27 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=32.3
Q ss_pred HHHHHHHHHhC-CceecC--ccH-----HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecC
Q 028948 72 IEEVVKRAHQH-DVYVST--GDW-----AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNV 122 (201)
Q Consensus 72 L~eKI~l~~~~-gV~v~~--Gtl-----fE~al~qg~~----~~~eyl~~~k~lGFd~IEISd 122 (201)
+++..++.+++ ++++.+ ||| |..++. ++. -++..++.+++.|||.|.|.=
T Consensus 54 ~~~~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~-~~~~r~~fi~~i~~~~~~~~~DGidiDw 115 (334)
T smart00636 54 FGQLKALKKKNPGLKVLLSIGGWTESDNFSSMLS-DPASRKKFIDSIVSFLKKYGFDGIDIDW 115 (334)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCCcchhHHHC-CHHHHHHHHHHHHHHHHHcCCCeEEECC
Confidence 45555566664 887776 664 333332 211 356777888999999999963
No 377
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=47.79 E-value=27 Score=31.59 Aligned_cols=41 Identities=32% Similarity=0.512 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCCh--------hHHHHHHHHHHHC
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPE--------ETLLRYVRLVKSA 142 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~--------~~r~~lI~~~~~~ 142 (201)
.+.+|.+.+.+.|+|+|||+-++...+. +...++++.+++.
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc
Confidence 4567888888999999999888643322 2335778887765
No 378
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.42 E-value=43 Score=30.59 Aligned_cols=27 Identities=15% Similarity=0.269 Sum_probs=24.0
Q ss_pred cCChhHHHHHHHHHHHCCCeEcccccc
Q 028948 126 EIPEETLLRYVRLVKSAGLKAKPKFAV 152 (201)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~pE~g~ 152 (201)
-.+.++..++|+.|+++|..|+||+-.
T Consensus 82 ~YT~~di~eiv~yA~~rgI~VIPEID~ 108 (357)
T cd06563 82 FYTQEEIREIVAYAAERGITVIPEIDM 108 (357)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEecCC
Confidence 468999999999999999999999753
No 379
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=47.33 E-value=18 Score=30.89 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=33.0
Q ss_pred CCceecC-c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh
Q 028948 82 HDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE 129 (201)
Q Consensus 82 ~gV~v~~-G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~ 129 (201)
|+|.++- | |++..+|.++ |++|+++|++-|.|+-..-.++.
T Consensus 103 Y~VrPseR~KGYA~emLkl~-------L~~ar~lgi~~Vlvtcd~dN~AS 145 (174)
T COG3981 103 YSVRPSERRKGYAKEMLKLA-------LEKARELGIKKVLVTCDKDNIAS 145 (174)
T ss_pred ceeChhhhccCHHHHHHHHH-------HHHHHHcCCCeEEEEeCCCCchh
Confidence 5666666 7 8999988886 88999999999999876655543
No 380
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=47.25 E-value=88 Score=27.56 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCE-EEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 70 PFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT-IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~eyl~~~k~lGFd~-IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
+..++.++.+++++..+..| .... .....++.+.+.++.++++|+.. +-++...-+ ......+.++.+.+.|+.
T Consensus 158 ~~~~~~v~~~~~~g~~~~~~~~~~~-~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~-~~~~~~~~~~~~~~~g~~ 233 (398)
T cd01293 158 PGGEELMREALKMGADVVGGIPPAE-IDEDGEESLDTLFELAQEHGLDIDLHLDETDDP-GSRTLEELAEEAERRGMQ 233 (398)
T ss_pred CCHHHHHHHHHHhCCCEEeCCCCCc-CCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCc-chhHHHHHHHHHHHhCCC
Confidence 34667777777776433222 1111 00111236777788888888643 233322211 122223567777777763
No 381
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=47.15 E-value=56 Score=29.53 Aligned_cols=52 Identities=4% Similarity=0.103 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHCCCeEccccccccC
Q 028948 104 KEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFN 155 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISdGti~i~~~~--r~~lI~~~~~~Gf~v~pE~g~k~~ 155 (201)
.+.+..|-+.||+.|=+..-.+++.+-- =.++++.|+..|.-|-.|+|.=-+
T Consensus 85 ~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 138 (282)
T TIGR01858 85 LDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGG 138 (282)
T ss_pred HHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCC
Confidence 3667888999999999975554443322 236788889999999999986533
No 382
>PLN02784 alpha-amylase
Probab=47.13 E-value=46 Score=34.95 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----------c---C-----ChhHHHHHHHHHHHCCCeEccccccccCC
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSL----------E---I-----PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti----------~---i-----~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~ 156 (201)
.+.+-+++++++||++|.|+--+- + + +.++..++|+.++++|++|...+=+....
T Consensus 522 ~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~a 594 (894)
T PLN02784 522 ELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRC 594 (894)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 567778999999999999976322 1 1 45789999999999999997776655544
No 383
>PRK07572 cytosine deaminase; Validated
Probab=47.10 E-value=1.3e+02 Score=27.80 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCceeEecC---CC-CCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCcc-HHHHHHHh
Q 028948 24 FGVTEMRSP---HY-TLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRN 98 (201)
Q Consensus 24 ~GlTmV~Dk---G~-s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gt-lfE~al~q 98 (201)
.|+|.|+|- +- .+. ..+.+.++-+..++++|.-...+-....++...-.+.++-+-+.|+.+..|. ..+.-...
T Consensus 110 ~G~Ttvrd~~d~~~~~~~-~~~a~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~~~~l~~g~d~iGg~p~~~~~~~~ 188 (426)
T PRK07572 110 RGLLAIRSHVDVCDPRLL-AVEALLEVRERVAPYLDLQLVAFPQDGVLRSPGAVDNLERALDMGVDVVGGIPHFERTMAD 188 (426)
T ss_pred cCcccEeeccccCCCccc-HHHHHHHHHHHhhccceEEEEeccChhhccCccHHHHHHHHHHcCCCEEeCCCCCccccch
Confidence 499999983 21 123 4556667778888999855444433223222112223333334677665432 22211111
Q ss_pred CCchHHHHHHHHHHcCCCE-EEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 99 GPSAFKEYVEDCKQVGFDT-IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 99 g~~~~~eyl~~~k~lGFd~-IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
..+.++..++.++++|... +=++.+.-++. ....++++...+.|+.
T Consensus 189 ~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~-~~~~~~~~~~~~~G~~ 235 (426)
T PRK07572 189 GAESVRLLCEIAAERGLRVDMHCDESDDPLS-RHIETLAAETQRLGLQ 235 (426)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEECCCCChhH-HHHHHHHHHHHHhCCC
Confidence 0137888999999999764 34444443332 2233567777777874
No 384
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=47.03 E-value=34 Score=31.50 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
.-.++.+.+.++|++.||+ |+-..+++++ +.|+.+.+.+...
T Consensus 23 ~k~~ia~~L~~~Gv~~IEv--G~p~~~~~~~-e~i~~i~~~~~~~ 64 (363)
T TIGR02090 23 QKVEIARKLDELGVDVIEA--GFPIASEGEF-EAIKKISQEGLNA 64 (363)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCCCChHHH-HHHHHHHhcCCCc
Confidence 4456777788889999997 5666677776 6677777666643
No 385
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=46.99 E-value=89 Score=28.04 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccc
Q 028948 72 IEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (201)
Q Consensus 72 L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE 149 (201)
+-+.+..++..||.+.- =|+.--.+..| .+.|++.+|+.|-+..=| .++|+|+-..+-..++++|+...|-
T Consensus 82 i~emvk~ar~~gvt~PIiLmgYYNPIl~yG---~e~~iq~ak~aGanGfii----vDlPpEEa~~~Rne~~k~gislvpL 154 (268)
T KOG4175|consen 82 IIEMVKEARPQGVTCPIILMGYYNPILRYG---VENYIQVAKNAGANGFII----VDLPPEEAETLRNEARKHGISLVPL 154 (268)
T ss_pred HHHHHHHhcccCcccceeeeecccHHHhhh---HHHHHHHHHhcCCCceEe----ccCChHHHHHHHHHHHhcCceEEEe
Confidence 55667777778874433 37777777885 889999999999754333 3899999999999999999988765
Q ss_pred cccccC
Q 028948 150 FAVMFN 155 (201)
Q Consensus 150 ~g~k~~ 155 (201)
+--.-.
T Consensus 155 vaPsTt 160 (268)
T KOG4175|consen 155 VAPSTT 160 (268)
T ss_pred eCCCCh
Confidence 544333
No 386
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=46.94 E-value=45 Score=31.70 Aligned_cols=71 Identities=21% Similarity=0.203 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 028948 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~ 142 (201)
+.+++-++.+++||+.+.. ..|.+..-.++.+-+.++.+.+.|.+.|=+-|-.--..+.+..++|+.+++.
T Consensus 117 ~~~~~~v~ya~~~g~~~~~--~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~ 187 (409)
T COG0119 117 ERAVDAVEYARDHGLEVRF--SAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKAN 187 (409)
T ss_pred HHHHHHHHHHHHcCCeEEE--EeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHh
Confidence 4466788999999987764 3455556666778888888889999999999999999999999999999987
No 387
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=46.71 E-value=23 Score=31.12 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=45.9
Q ss_pred eEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHH
Q 028948 28 EMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKE 105 (201)
Q Consensus 28 mV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~e 105 (201)
.+++-| +++ .+.++++..+.-++ +.+.| .+=.+.++.|++||+++.|| |--|+...-
T Consensus 65 ~lIGAG-TVL-~~~q~~~a~~aGa~-----------fiVsP-~~~~ev~~~a~~~~ip~~PG~~TptEi~~Al------- 123 (211)
T COG0800 65 ALIGAG-TVL-NPEQARQAIAAGAQ-----------FIVSP-GLNPEVAKAANRYGIPYIPGVATPTEIMAAL------- 123 (211)
T ss_pred cEEccc-ccc-CHHHHHHHHHcCCC-----------EEECC-CCCHHHHHHHHhCCCcccCCCCCHHHHHHHH-------
Confidence 344444 334 45555555554333 33555 46788999999999999999 788876543
Q ss_pred HHHHHHHcCCCEEEecCCcc
Q 028948 106 YVEDCKQVGFDTIELNVGSL 125 (201)
Q Consensus 106 yl~~~k~lGFd~IEISdGti 125 (201)
++|++.+.+=-+..
T Consensus 124 ------e~G~~~lK~FPa~~ 137 (211)
T COG0800 124 ------ELGASALKFFPAEV 137 (211)
T ss_pred ------HcChhheeecCccc
Confidence 57788777644433
No 388
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=46.33 E-value=22 Score=28.83 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=59.4
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEI 120 (201)
..+.+++ ..+..-.-+-|-.-...+.+...+.+.|+.++++|+.++...+ ..+ ..-++.+..+.++.|.+
T Consensus 106 ~~l~~~l-~~~~~~~~l~lei~e~~~~~~~~~~~~l~~l~~~G~~i~ld~~-----g~~----~~~~~~l~~l~~~~ikl 175 (236)
T PF00563_consen 106 DWLSNLL-QYGLPPSRLVLEISENDLPNDAELLENLRRLRSLGFRIALDDF-----GSG----SSSLEYLASLPPDYIKL 175 (236)
T ss_dssp HHHHHHH-HTTGGGGGEEEEEEGHHHHHHHHHHHHHHHHHHCT-EEEEEEE-----TST----CGCHHHHHHHCGSEEEE
T ss_pred ccccccc-cccccccceEEEEechHhhhhHHHHHHHHHHHhcCceeEeeec-----cCC----cchhhhhhhccccccee
Confidence 3455555 5555555566665554343333355899999999999987433 011 11233467788999999
Q ss_pred cCCccc-C----ChhHHHHHHHHHHHCCCeEccc
Q 028948 121 NVGSLE-I----PEETLLRYVRLVKSAGLKAKPK 149 (201)
Q Consensus 121 SdGti~-i----~~~~r~~lI~~~~~~Gf~v~pE 149 (201)
|-..+. + .......+++.+++.|.++..+
T Consensus 176 d~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (236)
T PF00563_consen 176 DGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAE 209 (236)
T ss_dssp EHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred ecccccccchhhHHHHHHHHHHHhhcccccccee
Confidence 988772 2 2333345777889999888553
No 389
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=46.24 E-value=44 Score=31.61 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHcCCCEE
Q 028948 102 AFKEYVEDCKQVGFDTI 118 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~I 118 (201)
.+++.+++++++|+++|
T Consensus 50 ~~~ell~~Anklg~~vi 66 (360)
T COG3589 50 RFKELLKEANKLGLRVI 66 (360)
T ss_pred HHHHHHHHHHhcCcEEE
Confidence 45555555555555543
No 390
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=46.01 E-value=37 Score=31.23 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
.-.++++.+.++||+.||+ |+-.++++++ +.++.+.+.+..
T Consensus 24 ~k~~ia~~L~~~Gv~~IEv--G~p~~~~~~~-e~i~~i~~~~~~ 64 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEV--GIPAMGEEER-AVIRAIVALGLP 64 (365)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCCCCHHHH-HHHHHHHHcCCC
Confidence 4467788888999999999 4555666665 566777766543
No 391
>PRK09389 (R)-citramalate synthase; Provisional
Probab=45.95 E-value=35 Score=32.98 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
.--++.+.+.++||+.||+ |+-..+++++ +.++.+.+.++.
T Consensus 25 ~K~~ia~~L~~~Gv~~IE~--G~p~~~~~d~-e~v~~i~~~~~~ 65 (488)
T PRK09389 25 EKLEIARKLDELGVDVIEA--GSAITSEGER-EAIKAVTDEGLN 65 (488)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCcCCHHHH-HHHHHHHhcCCC
Confidence 4457788888999999999 5665677776 667777776664
No 392
>PRK07369 dihydroorotase; Provisional
Probab=45.77 E-value=2.6e+02 Score=26.16 Aligned_cols=63 Identities=13% Similarity=-0.080 Sum_probs=36.4
Q ss_pred CCceeEecCCCC--CCcchhHHHHHHHhhc--ccccEEEeeCccccccChhHHHHHHHHHHhCCceecC
Q 028948 24 FGVTEMRSPHYT--LSSSHNVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST 88 (201)
Q Consensus 24 ~GlTmV~DkG~s--~~~g~~~l~DlLe~ag--~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~ 88 (201)
-|+|.|.|-.-+ .......+++.++.+. .|||+.=.+.-|..... +.+.+.-++ .+.||..+.
T Consensus 87 GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~-~~~~ei~~l-~~~Gv~~f~ 153 (418)
T PRK07369 87 GGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQG-KQLTELAEL-AAAGVVGFT 153 (418)
T ss_pred CCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCC-ccHhhHHHH-HHCCCEEEE
Confidence 399999995532 1225667777777764 48998866554332211 235554444 456765443
No 393
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=45.69 E-value=52 Score=23.94 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=25.2
Q ss_pred ChhHHHHHHHHHHhCCc-eecCc-c-HHHHHHHhC
Q 028948 68 PKPFIEEVVKRAHQHDV-YVSTG-D-WAEHLIRNG 99 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV-~v~~G-t-lfE~al~qg 99 (201)
+++.|++.|+=+-+.|= ..-|| | +||.+|.+-
T Consensus 15 s~~el~~~I~daI~sgEE~~LPGLGVlFE~~W~~~ 49 (65)
T PF14098_consen 15 SKEELKDTIEDAIQSGEEKALPGLGVLFEVIWKNS 49 (65)
T ss_pred CHHHHHHHHHHHHhccchhcCCchHHHHHHHHHhC
Confidence 35668888888888666 66788 7 999999874
No 394
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=45.61 E-value=24 Score=31.36 Aligned_cols=74 Identities=8% Similarity=0.070 Sum_probs=44.4
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC-CCeE--ccccccccCCCCcccccccccccEEEecc
Q 028948 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (201)
Q Consensus 99 g~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~-Gf~v--~pE~g~k~~~~dl~ag~~~a~g~~Vi~E~ 175 (201)
+++...+.++.+++.|+++|+++-++.........+.|+.+++. +..| |--....+...-.++|++ .|++..
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d-----~I~v~~ 201 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGAD-----GIVVSN 201 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCC-----EEEEcC
Confidence 34466777888899999999998877532111112456666654 4333 211222333345667777 888877
Q ss_pred cC
Q 028948 176 RS 177 (201)
Q Consensus 176 Re 177 (201)
+-
T Consensus 202 ~g 203 (299)
T cd02809 202 HG 203 (299)
T ss_pred CC
Confidence 53
No 395
>PRK07213 chlorohydrolase; Provisional
Probab=45.51 E-value=1.5e+02 Score=26.82 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=49.6
Q ss_pred ccChhHHHHHHHHHHhCCceecC--c-cHHHHHHHh---CCchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHH
Q 028948 66 LMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRN---GPSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVR 137 (201)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~--G-tlfE~al~q---g~~~~~eyl~~~k~lGFd--~IEISdGti~i~~~~r~~lI~ 137 (201)
-++.+.+++-.++++++|+++.. + +--|..+.. |... ++++.++|+. .+ .= ...+++++ ++
T Consensus 175 ~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~----v~~~~~~G~~~~~i--~H-~~~~~~~~----i~ 243 (375)
T PRK07213 175 EYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTE----IERLINLGFKPDFI--VH-ATHPSNDD----LE 243 (375)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCCh----HHHHHhcCCCCCEE--EE-CCCCCHHH----HH
Confidence 45678899999999999998886 4 554543322 2111 6777888997 43 22 23566666 66
Q ss_pred HHHHCCCe--Ecccccccc
Q 028948 138 LVKSAGLK--AKPKFAVMF 154 (201)
Q Consensus 138 ~~~~~Gf~--v~pE~g~k~ 154 (201)
++++.|-. ..|.-..++
T Consensus 244 ~la~~g~~v~~~P~sn~~l 262 (375)
T PRK07213 244 LLKENNIPVVVCPRANASF 262 (375)
T ss_pred HHHHcCCcEEECCcchhhh
Confidence 77788844 455544443
No 396
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=45.48 E-value=1.5e+02 Score=23.29 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC---hhHHHHHHHHHHHC--
Q 028948 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP---EETLLRYVRLVKSA-- 142 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~---~~~r~~lI~~~~~~-- 142 (201)
+.++...+.+..+.+++..| ..-.. ...+..-+..+.++++|.|+|.+-.-.--.+ .+.-.+.++.+.+.
T Consensus 35 ~~i~~~~~~~~~~~~~v~~~v~~~~~~---~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~ 111 (201)
T cd00945 35 GYVRLAADALAGSDVPVIVVVGFPTGL---TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAAD 111 (201)
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCCCC---CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 45555555554434665543 11111 1122456677889999999999864443222 46666777777665
Q ss_pred -CCeEc
Q 028948 143 -GLKAK 147 (201)
Q Consensus 143 -Gf~v~ 147 (201)
++.+.
T Consensus 112 ~~~pv~ 117 (201)
T cd00945 112 GGLPLK 117 (201)
T ss_pred CCceEE
Confidence 77764
No 397
>PLN02803 beta-amylase
Probab=45.40 E-value=47 Score=33.06 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=46.1
Q ss_pred hCCceecCccHHHHHH----HhCCchHHHHHHHHHHcCCCEEEecC--------CcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 81 QHDVYVSTGDWAEHLI----RNGPSAFKEYVEDCKQVGFDTIELNV--------GSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 81 ~~gV~v~~GtlfE~al----~qg~~~~~eyl~~~k~lGFd~IEISd--------Gti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
..+|+||-+--++.+- .++++.+...|+.+|.+|+|.|+|.- |--.-.=.--+++.+++++.|||+.+
T Consensus 83 ~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~ 162 (548)
T PLN02803 83 DSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQV 162 (548)
T ss_pred CCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE
Confidence 4457766553333321 23345789999999999999998853 23333445567899999999999843
No 398
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=45.28 E-value=35 Score=30.09 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCcc---------cCChhHHHHHHHHHHHC
Q 028948 102 AFKEYVEDCKQVG-FDTIELNVGSL---------EIPEETLLRYVRLVKSA 142 (201)
Q Consensus 102 ~~~eyl~~~k~lG-Fd~IEISdGti---------~i~~~~r~~lI~~~~~~ 142 (201)
.+.+..+.+++.| ||.|||+-++- .-..+...++|+.+++.
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~ 155 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV 155 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh
Confidence 5566667777889 99999965332 22345667888888876
No 399
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=45.21 E-value=1.6e+02 Score=26.64 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=50.4
Q ss_pred hHHHHHHHhhcccccEEEeeCcccc------ccChhHHHHHHHHHHhC------Cc----eecCccHHHHHHHhCCchHH
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH------DV----YVSTGDWAEHLIRNGPSAFK 104 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~------l~p~~~L~eKI~l~~~~------gV----~v~~GtlfE~al~qg~~~~~ 104 (201)
..+.+.++.++++.|++=+-+++-. ....+.+.+.++..++. ++ ++.|+ |- .. .+.
T Consensus 148 ~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-~~-----~~--~~~ 219 (327)
T cd04738 148 EDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-LS-----DE--ELE 219 (327)
T ss_pred HHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC-CC-----HH--HHH
Confidence 4556666777778888888664432 33445666666665542 13 33333 11 11 466
Q ss_pred HHHHHHHHcCCCEEEecCCcccC
Q 028948 105 EYVEDCKQVGFDTIELNVGSLEI 127 (201)
Q Consensus 105 eyl~~~k~lGFd~IEISdGti~i 127 (201)
+..+.|.+.|.|.|.+++.+..+
T Consensus 220 ~ia~~l~~aGad~I~~~n~~~~~ 242 (327)
T cd04738 220 DIADVALEHGVDGIIATNTTISR 242 (327)
T ss_pred HHHHHHHHcCCcEEEEECCcccc
Confidence 77788899999999999987644
No 400
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=45.16 E-value=47 Score=32.06 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=58.8
Q ss_pred cCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHH---HHHHhCCceecCcc--HHHHHHHhCCchHHH
Q 028948 31 SPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV---KRAHQHDVYVSTGD--WAEHLIRNGPSAFKE 105 (201)
Q Consensus 31 DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI---~l~~~~gV~v~~Gt--lfE~al~qg~~~~~e 105 (201)
=|||..++....|.++.+.+| +.|=+=+...+.. ...|+ ++++++||++.||. |. ...++
T Consensus 79 ~pGygflsen~~fae~~~~~g-----l~fiGP~~~~i~~--mgdK~~ar~~~~~aGVP~vpgs~~~~--------~~~ee 143 (449)
T COG0439 79 HPGYGFLSENAAFAEACAEAG-----LTFIGPSAEAIRR--MGDKITARRLMAKAGVPVVPGSDGAV--------ADNEE 143 (449)
T ss_pred cccchhhhCCHHHHHHHHHcC-----CeeeCcCHHHHHH--hhhHHHHHHHHHHcCCCcCCCCCCCc--------CCHHH
Confidence 367765556667788888887 4443333333322 44444 56788888888885 21 13478
Q ss_pred HHHHHHHcCCCEE-EecCCcc------cCChhHHHHHHHHHHHC
Q 028948 106 YVEDCKQVGFDTI-ELNVGSL------EIPEETLLRYVRLVKSA 142 (201)
Q Consensus 106 yl~~~k~lGFd~I-EISdGti------~i~~~~r~~lI~~~~~~ 142 (201)
..+.+++.||..| .=+.|-- -=+.++....+..+++.
T Consensus 144 ~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~e 187 (449)
T COG0439 144 ALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGE 187 (449)
T ss_pred HHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHH
Confidence 8888888888764 4444432 22566666666666654
No 401
>PLN00197 beta-amylase; Provisional
Probab=45.15 E-value=47 Score=33.19 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=47.3
Q ss_pred hCCceecCccHHHHHH----HhCCchHHHHHHHHHHcCCCEEEecC--------CcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 81 QHDVYVSTGDWAEHLI----RNGPSAFKEYVEDCKQVGFDTIELNV--------GSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 81 ~~gV~v~~GtlfE~al----~qg~~~~~eyl~~~k~lGFd~IEISd--------Gti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
..+|+||-+--++.+- .+++..+...|+.+|.+|+|.|+|.- |--.-.=.--++|.+++++.|||+.+
T Consensus 103 ~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~ 182 (573)
T PLN00197 103 GKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQA 182 (573)
T ss_pred CCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE
Confidence 3467777543333321 22345799999999999999999853 33333445667999999999999843
No 402
>PLN02801 beta-amylase
Probab=44.94 E-value=47 Score=32.81 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=35.5
Q ss_pred CchHHHHHHHHHHcCCCEEEecC--Ccc------cCChhHHHHHHHHHHHCCCeE
Q 028948 100 PSAFKEYVEDCKQVGFDTIELNV--GSL------EIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 100 ~~~~~eyl~~~k~lGFd~IEISd--Gti------~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+..+...|+.+|.+|++.|+|.. |-+ .-.=.--+++.+++++.|||+
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl 90 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKI 90 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeE
Confidence 44788899999999999988753 333 334445678899999999998
No 403
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=44.91 E-value=36 Score=28.71 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHhC-CceecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 69 KPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 69 ~~~L~eKI~l~~~~-gV~v~~-GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
++.+++-++.|++- +-.+.- -.+.|.-..-.-.+++|-++.||.+|+.-|=|- =.+.|..|.| .+-+..+++||.|
T Consensus 7 ~~~~e~~~~~Y~~~~~~~~~~~aa~vE~~~Y~~~tRveEiieFak~mgykkiGiA-fCiGL~~EA~-~~~~iL~~~gFev 84 (157)
T PF08901_consen 7 QEIIEEALELYKEDENRKIARAAAEVEGEGYGKLTRVEEIIEFAKRMGYKKIGIA-FCIGLRKEAR-ILAKILEANGFEV 84 (157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHcCCCeeeeh-hhHhHHHHHH-HHHHHHHHCCCEE
Confidence 45677777777763 223333 256665443223589999999999999999774 3567777776 6777778999999
No 404
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=44.90 E-value=52 Score=28.42 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=14.4
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 118 IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
+.|-.|.-..+.++-.++.+.+++.|..
T Consensus 67 ~~vi~gv~~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 67 VPVIAGVGANSTREAIELARHAEEAGAD 94 (281)
T ss_pred CeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 4444444455555555555555555544
No 405
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=44.76 E-value=2.2e+02 Score=31.08 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=71.9
Q ss_pred HHHhhcccccEEEeeCccccccChhHHHHHHHHHHh----CCceecCcc----HHHHHHHh--------------CCchH
Q 028948 46 IFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ----HDVYVSTGD----WAEHLIRN--------------GPSAF 103 (201)
Q Consensus 46 lLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~----~gV~v~~Gt----lfE~al~q--------------g~~~~ 103 (201)
.++.-+++||+ +.|...+..++.+++.+.+... .+++++.-| -+|.+|.. +..+|
T Consensus 393 qve~GA~iIDV---n~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~ 469 (1229)
T PRK09490 393 QVENGAQIIDI---NMDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKF 469 (1229)
T ss_pred HHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccH
Confidence 33445677776 7888888888889999998885 589999863 68999975 22368
Q ss_pred HHHHHHHHHcCCCEEEecC--CcccCChhHHHHHHH----HHHH-CCCeE
Q 028948 104 KEYVEDCKQVGFDTIELNV--GSLEIPEETLLRYVR----LVKS-AGLKA 146 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEISd--Gti~i~~~~r~~lI~----~~~~-~Gf~v 146 (201)
++.+..|++.|...|=.-- .=+.-+.++|.++.+ ++.+ .||..
T Consensus 470 ~~~~~l~~kyga~vV~m~~de~G~~~t~e~r~~ia~r~~~~~~~~~Gi~~ 519 (1229)
T PRK09490 470 IEHARLVRRYGAAVVVMAFDEQGQADTRERKIEICKRAYDILTEEVGFPP 519 (1229)
T ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 8899999999999887642 236777888887644 4443 67654
No 406
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=44.66 E-value=57 Score=30.88 Aligned_cols=85 Identities=19% Similarity=0.323 Sum_probs=60.2
Q ss_pred HHHhhcccccEEEeeCccccccC-hhHHHHHHHHHHhCCceecCc---c-HHHHHHHh-C-C------chHHHHHHHHHH
Q 028948 46 IFESMGQFVDGLKFSGGSHSLMP-KPFIEEVVKRAHQHDVYVSTG---D-WAEHLIRN-G-P------SAFKEYVEDCKQ 112 (201)
Q Consensus 46 lLe~ag~yID~lKfg~GTs~l~p-~~~L~eKI~l~~~~gV~v~~G---t-lfE~al~q-g-~------~~~~eyl~~~k~ 112 (201)
.|+.+-.=+|-+-+-=|.- =. ++.+++.++.|+++||++--| | |=...+.+ | | .+.-++++.|.+
T Consensus 94 Al~a~~~G~~~iRINPGNi--g~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~ 171 (360)
T PRK00366 94 ALAAAEAGADALRINPGNI--GKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEE 171 (360)
T ss_pred HHHHHHhCCCEEEECCCCC--CchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3444444488888887774 33 567999999999999988765 3 43333333 2 1 135678999999
Q ss_pred cCCCEEEecCCcccCChhHH
Q 028948 113 VGFDTIELNVGSLEIPEETL 132 (201)
Q Consensus 113 lGFd~IEISdGti~i~~~~r 132 (201)
+||+-|=||--+-+.+.--.
T Consensus 172 ~~f~~iviS~KsS~v~~~i~ 191 (360)
T PRK00366 172 LGFDDIKISVKASDVQDLIA 191 (360)
T ss_pred CCCCcEEEEEEcCCHHHHHH
Confidence 99999999988877765433
No 407
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=44.53 E-value=67 Score=29.23 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=57.8
Q ss_pred EEeeCccccccChhHHHHHHHHHHhC-CceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------
Q 028948 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL------- 125 (201)
Q Consensus 57 lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~--G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti------- 125 (201)
.|=|+|++.+...+.+.+.++-.+++ +++|+- - +|-... .. ...-++.+.+.+.|.++|.|.-.|.
T Consensus 96 ~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~-~~--~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg 172 (318)
T TIGR00742 96 QNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLD-SY--EFLCDFVEIVSGKGCQNFIVHARKAWLSGLSP 172 (318)
T ss_pred CCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcc-hH--HHHHHHHHHHHHcCCCEEEEeCCchhhcCCCc
Confidence 56688999999999999999999875 665553 2 332111 11 1456788899999999999999884
Q ss_pred ----cCChhHHHHHHHHHHHC
Q 028948 126 ----EIPEETLLRYVRLVKSA 142 (201)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~ 142 (201)
.+++-+| +.|+++++.
T Consensus 173 ~~~~~~~~~~~-~~i~~vk~~ 192 (318)
T TIGR00742 173 KENREIPPLRY-ERVYQLKKD 192 (318)
T ss_pred cccccCCchhH-HHHHHHHHh
Confidence 1333344 678877774
No 408
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=44.45 E-value=50 Score=29.02 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=50.2
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccccc-CCCCcccccccccccEEEecccCcCe
Q 028948 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF-NKSDIPSDRDRAFGAYVARAPRSTDK 180 (201)
Q Consensus 107 l~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~-~~~dl~ag~~~a~g~~Vi~E~Res~~ 180 (201)
++++++.|-|+|=+.... ++.++..++++.+++.|+.+..|+--.. .....++|++ +|-+-.|.-.+
T Consensus 126 i~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gad-----iIgin~rdl~~ 193 (260)
T PRK00278 126 IYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAP-----LIGINNRNLKT 193 (260)
T ss_pred HHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCC-----EEEECCCCccc
Confidence 788999999999998877 4678899999999999999877765332 1223455666 77776665443
No 409
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=44.45 E-value=64 Score=28.01 Aligned_cols=89 Identities=10% Similarity=0.123 Sum_probs=60.2
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC----------CceecCccHHHHHHHhCCchHHHHHH
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----------DVYVSTGDWAEHLIRNGPSAFKEYVE 108 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~----------gV~v~~GtlfE~al~qg~~~~~eyl~ 108 (201)
.....+.+|+.-.+. +-.||.++.+.+.+++-.+.+-.- +=++++-+|-| ..- ...++++
T Consensus 84 s~e~~~~~l~~Ga~k-----vvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~---~~~--~~~e~~~ 153 (232)
T PRK13586 84 DIEKAKRLLSLDVNA-----LVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKE---KSM--EVIDGIK 153 (232)
T ss_pred CHHHHHHHHHCCCCE-----EEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCee---CCC--CHHHHHH
Confidence 444555577765554 467999999999999888777211 11455546755 333 6889999
Q ss_pred HHHHcCCCEEEe----cCCcccCChhHHHHHHH
Q 028948 109 DCKQVGFDTIEL----NVGSLEIPEETLLRYVR 137 (201)
Q Consensus 109 ~~k~lGFd~IEI----SdGti~i~~~~r~~lI~ 137 (201)
.+.++|+..|=+ .||+..=++-+..+.+.
T Consensus 154 ~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~ 186 (232)
T PRK13586 154 KVNELELLGIIFTYISNEGTTKGIDYNVKDYAR 186 (232)
T ss_pred HHHhcCCCEEEEecccccccCcCcCHHHHHHHH
Confidence 999999987766 46877666655544443
No 410
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.41 E-value=95 Score=29.96 Aligned_cols=101 Identities=19% Similarity=0.346 Sum_probs=77.7
Q ss_pred hHHHHHHHhhcccccEEE-eeCccccccChhHHHHHHHHHHhC-------CceecCc-c-HHHHHHHhCCchHHHHHHHH
Q 028948 41 NVLEDIFESMGQFVDGLK-FSGGSHSLMPKPFIEEVVKRAHQH-------DVYVSTG-D-WAEHLIRNGPSAFKEYVEDC 110 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lK-fg~GTs~l~p~~~L~eKI~l~~~~-------gV~v~~G-t-lfE~al~qg~~~~~eyl~~~ 110 (201)
..|.+||+..+. |++++ +=++ +++|.+...+.|+++.+. .+++-.| . -+..+=+.- ..++|++.+
T Consensus 212 ~~l~~Ll~~l~~-I~G~~riR~~--~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~y--t~e~~~~~i 286 (437)
T COG0621 212 PNLADLLRELSK-IPGIERIRFG--SSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGY--TVEEYLEII 286 (437)
T ss_pred cCHHHHHHHHhc-CCCceEEEEe--cCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCc--CHHHHHHHH
Confidence 468999999999 87532 2233 389999999999999996 4455557 2 666665555 789999999
Q ss_pred HHc--CCCEEEecCCcc----cCChhHHHHHHHHHHHCCCeE
Q 028948 111 KQV--GFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 111 k~l--GFd~IEISdGti----~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+++ -+.-+-||..+| .=++++..+..+.+++.+|.-
T Consensus 287 ~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~ 328 (437)
T COG0621 287 EKLRAARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDR 328 (437)
T ss_pred HHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCE
Confidence 988 688888887665 678889999999999988864
No 411
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=44.19 E-value=54 Score=28.78 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g 151 (201)
..++.++.+.+.|.|+|-|. ||..+..+.-.++++++|+..+-+.-|.|
T Consensus 15 ~~~~~~~~~~~~gtdai~vG-GS~~vt~~~~~~~v~~ik~~~lPvilfp~ 63 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIG-GSQGVTYEKTDTLIEALRRYGLPIILFPS 63 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEc-CCCcccHHHHHHHHHHHhccCCCEEEeCC
Confidence 35788999999999999885 89999999999999999998876654444
No 412
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=44.16 E-value=53 Score=28.81 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=14.8
Q ss_pred ecCCcccCChhHHHHHHHHHHHCCCe
Q 028948 120 LNVGSLEIPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (201)
|-.|....+.++=.++++.+++.|..
T Consensus 73 vi~gv~~~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 73 VIAGTGSNSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred EEeecCCchHHHHHHHHHHHHHcCCC
Confidence 33455555555666666666666654
No 413
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=43.89 E-value=71 Score=27.63 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=42.9
Q ss_pred HHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHH
Q 028948 75 VVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136 (201)
Q Consensus 75 KI~l~~~~gV~v~~G---tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI 136 (201)
-.++.++|||.+|.| ++.|+|-.+| =..+++++++.++--..- +...-+.|.+....+|
T Consensus 18 ~~~vf~~~~idfCcgG~~~l~ea~~~~~-i~~~~~~~~l~~~~~~~~--~~~~~~~~~~~LidyI 79 (220)
T PRK10992 18 ATALFREYDLDFCCGGKQTLARAAARKN-LDIDVIEARLAALQEQPI--EKDWRSAPLAELIDHI 79 (220)
T ss_pred HHHHHHHcCCcccCCCCchHHHHHHHcC-CCHHHHHHHHHHHHhccc--cCChhhCCHHHHHHHH
Confidence 356889999999985 4888887776 348888888888743332 3445567777777777
No 414
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=43.71 E-value=41 Score=36.23 Aligned_cols=49 Identities=27% Similarity=0.465 Sum_probs=38.2
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 96 IRNGPSAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 96 l~qg~~~~~eyl~~~k~lGFd~IEISd-Gti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
+..|..+++++++.|+++|+++|=|+| |++ .--.++.+.+++.|+++++
T Consensus 14 lLdg~~~i~elv~~A~~~G~~alAiTDh~~l----~G~~~f~~~~~~~gIkpIi 63 (1170)
T PRK07374 14 LLDGASQLPKMVERAKELGMPAIALTDHGVM----YGAIELLKLCKGKGIKPII 63 (1170)
T ss_pred hhhccCCHHHHHHHHHHCCCCEEEEecCCch----HHHHHHHHHHHHcCCeEEE
Confidence 446667899999999999999999998 433 3334677888899988865
No 415
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=43.70 E-value=1.3e+02 Score=28.05 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=73.2
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccE---EEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-
Q 028948 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDG---LKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN- 98 (201)
Q Consensus 26 lTmV~DkG~s~~~g~~~l~DlLe~ag~yID~---lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q- 98 (201)
-|.-++-|-|..-.+..++.+++..-.+.++ .-+. .-.-|..+-+++++.++++|| .++.| ++-+..+..
T Consensus 64 ~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~eit---iE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l 140 (390)
T PRK06582 64 KSIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEIT---LETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKL 140 (390)
T ss_pred eEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEE---EEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHc
Confidence 3777777766333888999999888765422 2233 333565656899999999999 88889 777777654
Q ss_pred C----CchHHHHHHHHHHcCCCEEE--ecCCcccCChhHHHHHHHHHHHCC
Q 028948 99 G----PSAFKEYVEDCKQVGFDTIE--LNVGSLEIPEETLLRYVRLVKSAG 143 (201)
Q Consensus 99 g----~~~~~eyl~~~k~lGFd~IE--ISdGti~i~~~~r~~lI~~~~~~G 143 (201)
| .+.+.+-++.+++. |..|- +--|.=.-+.+++.+=++.+.+.+
T Consensus 141 gR~h~~~~~~~ai~~~~~~-~~~v~~DlI~GlPgqt~e~~~~~l~~~~~l~ 190 (390)
T PRK06582 141 GRTHDCMQAIKTIEAANTI-FPRVSFDLIYARSGQTLKDWQEELKQAMQLA 190 (390)
T ss_pred CCCCCHHHHHHHHHHHHHh-CCcEEEEeecCCCCCCHHHHHHHHHHHHhcC
Confidence 2 12344456666666 65443 334443444456666677777655
No 416
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=43.56 E-value=1.2e+02 Score=26.70 Aligned_cols=92 Identities=14% Similarity=0.224 Sum_probs=52.2
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEI 120 (201)
..+-+.|..+| ||.+=+|+..+. |. ..+-++...+.+.....-+|. . .-.+.++.+.+.|.+.|.+
T Consensus 25 ~~i~~~L~~~G--v~~IEvG~P~~~--~~--~~~~~~~l~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 25 IEIAKALDAFG--VDYIELTSPAAS--PQ--SRADCEAIAKLGLKAKILTHI-----R---CHMDDARIAVETGVDGVDL 90 (262)
T ss_pred HHHHHHHHHcC--CCEEEEECCCCC--HH--HHHHHHHHHhCCCCCcEEEEe-----c---CCHHHHHHHHHcCcCEEEE
Confidence 45666777788 888888874432 22 444555554444321112332 2 1234577777888888887
Q ss_pred cCCc--------ccCChhH----HHHHHHHHHHCCCeE
Q 028948 121 NVGS--------LEIPEET----LLRYVRLVKSAGLKA 146 (201)
Q Consensus 121 SdGt--------i~i~~~~----r~~lI~~~~~~Gf~v 146 (201)
.... ...+.++ -.++|+.+++.|++|
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v 128 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEV 128 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 5321 2233333 455668888888876
No 417
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=43.35 E-value=1.5e+02 Score=26.77 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHCCCeEccccccc
Q 028948 105 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 105 eyl~~~k~lGFd~IEISdGti~i~~~~r----~~lI~~~~~~Gf~v~pE~g~k 153 (201)
+.+..|-+.||+.|=+.--.+ |.++= .++++.|+..|.-|-.|+|.=
T Consensus 88 e~i~~ai~~GftSVM~DgS~l--p~eeNi~~T~~vv~~Ah~~gvsVEaElG~v 138 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKL--PLEENIALTKKVVEIAHAVGVSVEAELGKI 138 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEEeeec
Confidence 567788889999999975554 44442 367888999999999999864
No 418
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=43.31 E-value=35 Score=30.26 Aligned_cols=89 Identities=25% Similarity=0.296 Sum_probs=58.7
Q ss_pred cccChhHHHHHHHHHHhCCceecC--cc---HHHHHHHhCCchHHH---HH------HHHHHcCCCEEEe-cCCcccCCh
Q 028948 65 SLMPKPFIEEVVKRAHQHDVYVST--GD---WAEHLIRNGPSAFKE---YV------EDCKQVGFDTIEL-NVGSLEIPE 129 (201)
Q Consensus 65 ~l~p~~~L~eKI~l~~~~gV~v~~--Gt---lfE~al~qg~~~~~e---yl------~~~k~lGFd~IEI-SdGti~i~~ 129 (201)
.|+|. ++|.+..+|+.|+.||. || ++|..-.|= .++. |- ..-|-+|||.-|- ||+
T Consensus 88 ~lT~G--i~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L--gi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsds------ 157 (227)
T KOG1615|consen 88 TLTPG--IRELVSRLHARGTQVYLISGGFRQLIEPVAEQL--GIPKSNIYANELLFDKDGKYLGFDTNEPTSDS------ 157 (227)
T ss_pred ccCCC--HHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh--CCcHhhhhhheeeeccCCcccccccCCccccC------
Confidence 47777 99999999999997775 76 566655552 1221 11 1223445554442 222
Q ss_pred hHHHHHHHHHHHCCCeEccccccccCCCCcccccc
Q 028948 130 ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRD 164 (201)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v~pE~g~k~~~~dl~ag~~ 164 (201)
.-|.+.|+..++ ++-.+.-.=+-+++.|++|-..
T Consensus 158 ggKa~~i~~lrk-~~~~~~~~mvGDGatDlea~~p 191 (227)
T KOG1615|consen 158 GGKAEVIALLRK-NYNYKTIVMVGDGATDLEAMPP 191 (227)
T ss_pred CccHHHHHHHHh-CCChheeEEecCCccccccCCc
Confidence 256788888887 7888888888889999887655
No 419
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=43.20 E-value=42 Score=35.96 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=38.6
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 95 LIRNGPSAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 95 al~qg~~~~~eyl~~~k~lGFd~IEISd-Gti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
.+..|..+++++++.|+++|+++|=|+| +++ .--.++.+.+++.|++++.
T Consensus 12 SlLdg~~~i~elv~~A~e~G~~avAiTDH~~l----~g~~~f~~~a~~~gIkpIi 62 (1135)
T PRK05673 12 SLLDGAAKIKPLVKKAAELGMPAVALTDHGNL----FGAVEFYKAAKGAGIKPII 62 (1135)
T ss_pred chhhhcCCHHHHHHHHHHcCCCEEEEEcCCcc----HHHHHHHHHHHHcCCeEEE
Confidence 3446667899999999999999999998 444 2334677888899988864
No 420
>PRK09234 fbiC FO synthase; Reviewed
Probab=43.17 E-value=80 Score=32.85 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=69.6
Q ss_pred CCCceeEec-CCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChh----------HHHHHHHHHHhCCceecCccH
Q 028948 23 RFGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP----------FIEEVVKRAHQHDVYVSTGDW 91 (201)
Q Consensus 23 ~~GlTmV~D-kG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~----------~L~eKI~l~~~~gV~v~~Gtl 91 (201)
..|.|+|.= -|....-...++.++++..-...--+++ ++..|-+ .++|.+..++++|+.-+|||.
T Consensus 571 ~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i----~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~ 646 (843)
T PRK09234 571 VAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHV----HAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTA 646 (843)
T ss_pred HCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeE----EecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCc
Confidence 346665532 2322211455677777766554333333 1111111 257899999999999999998
Q ss_pred HHHHHH---------hC-CchHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHCC
Q 028948 92 AEHLIR---------NG-PSAFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAG 143 (201)
Q Consensus 92 fE~al~---------qg-~~~~~eyl~~~k~lGFd~IEISdGti---~i~~~~r~~lI~~~~~~G 143 (201)
.|++-. +- .+..-+-++.++++|+. ++.|.+ .-+.++|.+.+..+++..
T Consensus 647 aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~---~~stmm~G~~Et~edrv~hl~~LreLq 708 (843)
T PRK09234 647 AEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLR---SSSTMMYGHVDTPRHWVAHLRVLRDIQ 708 (843)
T ss_pred hhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCC---cccceEEcCCCCHHHHHHHHHHHHhcC
Confidence 888763 11 11233556778888876 555543 457788888888888876
No 421
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=43.16 E-value=1.7e+02 Score=26.22 Aligned_cols=102 Identities=15% Similarity=0.221 Sum_probs=61.6
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc---eecCccHHHHHH--HhCCch---HHHHHHHHHH
Q 028948 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLI--RNGPSA---FKEYVEDCKQ 112 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~GtlfE~al--~qg~~~---~~eyl~~~k~ 112 (201)
..+.++++.+.++-.+-+++.-|. -..+.+.++.++++|+ .++.-++=+..+ ..+.+. +-+-++.+++
T Consensus 76 ~dl~~li~~i~~~~~l~~i~itTN----G~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~ 151 (329)
T PRK13361 76 RGCDQLVARLGKLPGLEELSLTTN----GSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKA 151 (329)
T ss_pred ccHHHHHHHHHhCCCCceEEEEeC----hhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence 356677776655432213443333 3335567777888876 355534422111 112223 4556677788
Q ss_pred cCCCEEEecCCcc-cCChhHHHHHHHHHHHCCCeE
Q 028948 113 VGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 113 lGFd~IEISdGti-~i~~~~r~~lI~~~~~~Gf~v 146 (201)
.|+..|.|+-=.+ ....++..++++.+++.|..+
T Consensus 152 ~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~ 186 (329)
T PRK13361 152 AGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDI 186 (329)
T ss_pred cCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeE
Confidence 9997777764333 367788999999999999876
No 422
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=43.05 E-value=53 Score=30.02 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCCEEEec---------CCc----------ccCChhHHHHHHHHHHHCCCeEccccccccCC
Q 028948 105 EYVEDCKQVGFDTIELN---------VGS----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (201)
Q Consensus 105 eyl~~~k~lGFd~IEIS---------dGt----------i~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~ 156 (201)
+=|++.++|||++|=|| .|. ..=+.++..++|+.++++|++|...+-....+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s 103 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTS 103 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCC
Confidence 45667777888887332 222 12346899999999999999997766655544
No 423
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=42.98 E-value=58 Score=29.99 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=34.1
Q ss_pred cChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 028948 67 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+..+.+++-++++|++|+++.. +. +.-.+-++.|+++|++.+|- .+. .+.++.+++.|..+
T Consensus 211 ~~~e~i~~~v~~A~~~g~~v~s---------H~-~~~~~~i~~a~~~Gv~~~e~-----~~~----~e~~~~~~~~g~~v 271 (383)
T PRK15446 211 YAPPNRRAIAALARARGIPLAS---------HD-DDTPEHVAEAHALGVAIAEF-----PTT----LEAARAARALGMSV 271 (383)
T ss_pred cCHHHHHHHHHHHHHCCCceee---------cC-CCCHHHHHHHHHcCCceeeC-----CCc----HHHHHHHHHCCCEE
Confidence 4455677778888888877721 11 01123356677777777762 122 23345555566655
Q ss_pred c
Q 028948 147 K 147 (201)
Q Consensus 147 ~ 147 (201)
.
T Consensus 272 ~ 272 (383)
T PRK15446 272 L 272 (383)
T ss_pred E
Confidence 3
No 424
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=42.82 E-value=47 Score=30.15 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=35.1
Q ss_pred hHHHHHHHhhcccccEEEeeC--ccccccChhHHHHHHHHHHhCCceec
Q 028948 41 NVLEDIFESMGQFVDGLKFSG--GSHSLMPKPFIEEVVKRAHQHDVYVS 87 (201)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~--GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (201)
...+++++...+.++++|+-+ +.+..++.+.+++.+++++++|+++.
T Consensus 142 ~~~~~~~~~~~~~~~g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~ 190 (379)
T PRK12394 142 NKIHALFRQYRNVLQGLKLRVQTEDIAEYGLKPLTETLRIANDLRCPVA 190 (379)
T ss_pred HHHHHHHHHCcCcEEEEEEEEecccccccchHHHHHHHHHHHHcCCCEE
Confidence 466667766666688777664 44446778899999999999997664
No 425
>PRK13561 putative diguanylate cyclase; Provisional
Probab=42.76 E-value=69 Score=30.91 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=57.7
Q ss_pred CCCCceeEec-CCCCCCcchhHHHHHHHhhcccccEEEeeCc--cccccChhHHHHHHHHHHhCCceecC-ccHHHHHHH
Q 028948 22 RRFGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSGG--SHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIR 97 (201)
Q Consensus 22 R~~GlTmV~D-kG~s~~~g~~~l~DlLe~ag~yID~lKfg~G--Ts~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~ 97 (201)
|..|....+| -|- |...+..+-....=-+|++|+--. ...-.++..++..++++|+.|+.|.- | .
T Consensus 544 ~~~G~~i~lddfG~----g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAeg-------V 612 (651)
T PRK13561 544 RNAGVRVALDDFGM----GYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAEG-------V 612 (651)
T ss_pred HHCCCEEEEECCCC----CcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEec-------C
Confidence 5568887776 453 444444443322224899999521 11223567899999999999998765 5 0
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcc---cCChhHHH
Q 028948 98 NGPSAFKEYVEDCKQVGFDTIELNVGSL---EIPEETLL 133 (201)
Q Consensus 98 qg~~~~~eyl~~~k~lGFd~IEISdGti---~i~~~~r~ 133 (201)
.-++-++.++++|+|.+- |+. .+|.++..
T Consensus 613 ----E~~~~~~~l~~~g~d~~Q---G~~~~~P~~~~~~~ 644 (651)
T PRK13561 613 ----ETEAQRDWLLKAGVGIAQ---GFLFARALPIEIFE 644 (651)
T ss_pred ----CCHHHHHHHHhcCCCEEe---CCcccCCCCHHHHH
Confidence 113345567789998875 444 56665553
No 426
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=42.60 E-value=53 Score=31.96 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=62.9
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhccc----ccEEEeeCcc-cc-------ccChhHHHHHHHHHHhCCceecC-c-cHH
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQF----VDGLKFSGGS-HS-------LMPKPFIEEVVKRAHQHDVYVST-G-DWA 92 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~y----ID~lKfg~GT-s~-------l~p~~~L~eKI~l~~~~gV~v~~-G-tlf 92 (201)
|-+||=..|+....=.++|++..+..+ ++.+=+++|+ +- -.|.+.|+.--+..++--+..-. | -++
T Consensus 18 tTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~v 97 (468)
T PRK12581 18 TVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLL 97 (468)
T ss_pred CCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeecccccc
Confidence 345888877651222345555544322 2334444453 33 24444444444444332222111 3 011
Q ss_pred HHHHHhC-CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 93 EHLIRNG-PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 93 E~al~qg-~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
.+..- .+-++.|++.+.+.|+|.+-|-|..-++ +.-...|+.+++.|..+..
T Consensus 98 --gy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~--~n~~~ai~~ak~~G~~~~~ 150 (468)
T PRK12581 98 --GYRHYADDIVDKFISLSAQNGIDVFRIFDALNDP--RNIQQALRAVKKTGKEAQL 150 (468)
T ss_pred --CccCCcchHHHHHHHHHHHCCCCEEEEcccCCCH--HHHHHHHHHHHHcCCEEEE
Confidence 11110 1467888888888888888888866543 3445678888888888743
No 427
>PRK11440 putative hydrolase; Provisional
Probab=42.52 E-value=80 Score=25.75 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=55.7
Q ss_pred EEEeeCccccccChhHHHHHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH
Q 028948 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL 133 (201)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~ 133 (201)
+-|-.++. ++..+ |.+. ++++|| .+. .|-..+.|+.+- . ..+.++||+.+=++|++-+.+.+...
T Consensus 99 i~K~~~sa--F~~T~-L~~~---L~~~gi~~lii~Gv~T~~CV~~T--a-----~~A~~~gy~v~vv~Da~as~~~~~h~ 165 (188)
T PRK11440 99 VTKRQWGA--FYGTD-LELQ---LRRRGIDTIVLCGISTNIGVEST--A-----RNAWELGFNLVIAEDACSAASAEQHQ 165 (188)
T ss_pred EecCCcCC--CCCCC-HHHH---HHHCCCCEEEEeeechhHHHHHH--H-----HHHHHCCCEEEEechhhcCCCHHHHH
Confidence 66876544 44433 4444 578999 333 488999999885 3 56788999999999999999999998
Q ss_pred HHHHHHHHC
Q 028948 134 RYVRLVKSA 142 (201)
Q Consensus 134 ~lI~~~~~~ 142 (201)
..++.+...
T Consensus 166 ~al~~~~~~ 174 (188)
T PRK11440 166 NSMNHIFPR 174 (188)
T ss_pred HHHHHHHhh
Confidence 888887654
No 428
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.49 E-value=92 Score=20.07 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHcCCCEEEec---------CCc------ccCCh-hHHHHHHHHHHHCCCeEc
Q 028948 102 AFKEYVEDCKQVGFDTIELN---------VGS------LEIPE-ETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEIS---------dGt------i~i~~-~~r~~lI~~~~~~Gf~v~ 147 (201)
.+.+.++.+.+.|.+..++. ++. ++.+. ++...+++.+++.|+++.
T Consensus 11 ~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 11 QLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred hHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 56666666666676666443 122 23333 667799999999999874
No 429
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=42.43 E-value=1e+02 Score=26.77 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=53.5
Q ss_pred EEEeeCccccc-cChhHHHHHHHHHHhCCceecC---c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-CCh
Q 028948 56 GLKFSGGSHSL-MPKPFIEEVVKRAHQHDVYVST---G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-IPE 129 (201)
Q Consensus 56 ~lKfg~GTs~l-~p~~~L~eKI~l~~~~gV~v~~---G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~-i~~ 129 (201)
-|-|=.-=+.+ -..+.+++.++.+|+.|+.+.- | |+.= +++.+++-||.|-|+-.++. +..
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ss-------------l~~L~~l~~d~iKID~~fi~~i~~ 187 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSS-------------LSYLKRLPPDILKIDRSFVRDLET 187 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHH-------------HHHHhhCCCCeEEECHHHHhhccc
Confidence 44444443343 2333577788888888887775 5 3322 23345678899999887773 222
Q ss_pred -----hHHHHHHHHHHHCCCeEccccccc
Q 028948 130 -----ETLLRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 130 -----~~r~~lI~~~~~~Gf~v~pE~g~k 153 (201)
.--..+|..+++.|++|..| |+.
T Consensus 188 ~~~~~~iv~~iv~la~~l~~~vvaE-GVE 215 (256)
T COG2200 188 DARDQAIVRAIVALAHKLGLTVVAE-GVE 215 (256)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEe-ecC
Confidence 23457889999999999776 443
No 430
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=41.82 E-value=37 Score=30.74 Aligned_cols=63 Identities=17% Similarity=0.042 Sum_probs=40.5
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhc---ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHH
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFESMG---QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLI 96 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~ag---~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al 96 (201)
.++....|=- +. ++..++++++.-+ =-+|..|.|+ +. ..++.+++|++|||.+++|..+|..+
T Consensus 238 ~~~pia~dE~--~~-~~~~~~~~i~~~~~d~~~~d~~~~GG----it---~~~~~~~~a~~~gi~~~~~~~~~s~i 303 (365)
T cd03318 238 NRVPIMADES--VS-GPADAFELARRGAADVFSLKIAKSGG----LR---RAQKVAAIAEAAGIALYGGTMLESSI 303 (365)
T ss_pred cCCCEEcCcc--cC-CHHHHHHHHHhCCCCeEEEeecccCC----HH---HHHHHHHHHHHcCCceeecCcchhHH
Confidence 4555566543 34 6778888887532 1234444554 32 27889999999999999886446543
No 431
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=41.76 E-value=53 Score=28.84 Aligned_cols=60 Identities=13% Similarity=-0.054 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccc---cCCCCcccccc
Q 028948 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM---FNKSDIPSDRD 164 (201)
Q Consensus 105 eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k---~~~~dl~ag~~ 164 (201)
...+.+...|||.|-|.-=--.++.++...+|+.++..|..+..-+-.. ..+.-|++|++
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~ 86 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFY 86 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCC
Confidence 4556667889999999999999999999999999999998764322211 12244666666
No 432
>PRK09059 dihydroorotase; Validated
Probab=41.75 E-value=3e+02 Score=25.77 Aligned_cols=126 Identities=14% Similarity=0.096 Sum_probs=69.6
Q ss_pred CCCCceeEecCCCC--CCcchhHHHHHHHhhc--ccccEEEeeCccccccChhHHHHHHHHHHhCCceecC-ccHHHHHH
Q 028948 22 RRFGVTEMRSPHYT--LSSSHNVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLI 96 (201)
Q Consensus 22 R~~GlTmV~DkG~s--~~~g~~~l~DlLe~ag--~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al 96 (201)
...|+|-+++-.-+ ...+...++.+++.+. .++|+.=.+.-|.-..+ +.+.+. ..+.+.||..+. +++ .
T Consensus 88 ~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~-~~l~e~-~~l~~~Gv~~f~~~~~---~- 161 (429)
T PRK09059 88 AAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAG-EEMTEF-GLLRAAGAVAFTDGRR---S- 161 (429)
T ss_pred HhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCC-cchHHH-HHHHhcCcEEEecCCc---c-
Confidence 45599999885421 2235667888888765 37887654432222222 235543 334577887665 220 0
Q ss_pred HhCCchHHHHHHHHHHcCCCEE------E------ecCC-----------------------------------cccCCh
Q 028948 97 RNGPSAFKEYVEDCKQVGFDTI------E------LNVG-----------------------------------SLEIPE 129 (201)
Q Consensus 97 ~qg~~~~~eyl~~~k~lGFd~I------E------ISdG-----------------------------------ti~i~~ 129 (201)
..+...+.+-+++++++|.-.+ + ..+| ..-++.
T Consensus 162 ~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~ 241 (429)
T PRK09059 162 VANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISC 241 (429)
T ss_pred cCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCC
Confidence 0111124455666666664332 1 1111 123556
Q ss_pred hHHHHHHHHHHHCCCeEccccccc
Q 028948 130 ETLLRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v~pE~g~k 153 (201)
.+-.++|+++++.|..|..|+-..
T Consensus 242 ~~~~~~i~~ak~~g~~vt~ev~ph 265 (429)
T PRK09059 242 AESAEALRRAKDRGLKVTAGVSIN 265 (429)
T ss_pred HHHHHHHHHHHHCCCCEEEeecHH
Confidence 666788999999998887776544
No 433
>PRK06267 hypothetical protein; Provisional
Probab=41.74 E-value=84 Score=28.76 Aligned_cols=82 Identities=17% Similarity=0.070 Sum_probs=47.4
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCC---ceecCcc-HHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc-c-
Q 028948 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS-L- 125 (201)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g---V~v~~Gt-lfE~al~qg~~~~~eyl~~~k~lGFd-~IEISdGt-i- 125 (201)
.++.+=+..|.. ++.+.|.+.++..++.. +.++.|- -.+.+-.. +.-|++ .+|.++-. .
T Consensus 79 Gv~~~~lsgG~~--~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~------------~l~Gv~g~~ET~~~~~~~ 144 (350)
T PRK06267 79 GWKLEFISGGYG--YTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLN------------EIEGVVGAVETVNPKLHR 144 (350)
T ss_pred CCCEEEEecCCC--CCHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhc------------cccCceeeeecCCHHHHH
Confidence 356443555554 34455888888876653 3555562 22222111 111222 36666431 1
Q ss_pred ----cCChhHHHHHHHHHHHCCCeEcc
Q 028948 126 ----EIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
..+.+++.+.++.+++.|+++.+
T Consensus 145 ~i~~~~s~ed~~~~l~~ak~aGi~v~~ 171 (350)
T PRK06267 145 EICPGKPLDKIKEMLLKAKDLGLKTGI 171 (350)
T ss_pred hhCCCCCHHHHHHHHHHHHHcCCeeee
Confidence 46889999999999999999743
No 434
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=41.65 E-value=2.9e+02 Score=27.45 Aligned_cols=129 Identities=21% Similarity=0.224 Sum_probs=87.0
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEE--eeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCC-
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLK--FSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGP- 100 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lK--fg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~- 100 (201)
+++..-.||+.-+. .=-..|++-|+=+|=+- |=+||+.-.|.+.=++-|..++++=... |..+|-|...|-
T Consensus 106 R~~~~~ydpY~q~~----~Rl~qL~~igh~~~KvEliimGGTFta~~~~yqe~Fi~~~~~amn~f--~~~le~a~~~ne~ 179 (515)
T COG1243 106 RAIKNRYDPYEQVR----ARLKQLETIGHTSDKVELIIMGGTFTALSLEYQEWFLKVALKAMNDF--GYDLEEAQRKNET 179 (515)
T ss_pred hHhhccCCcHHHHH----HHHHHHHHcCCCcceEEEEEecccccCCCHHHHHHHHHHHHHhhhcc--chhHHHHHHhhcc
Confidence 34455556654221 11223677888777543 3469999999999999999999886644 544776665532
Q ss_pred --------------c-hHHHHHHHHHHcCCCEEEecCCccc----------CChhHHHHHHHHHHHCCCeEccccccccC
Q 028948 101 --------------S-AFKEYVEDCKQVGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (201)
Q Consensus 101 --------------~-~~~eyl~~~k~lGFd~IEISdGti~----------i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~ 155 (201)
+ ..++=++..+.+|.+.||+-.-|+. =.-++=.+.-+.+|+.||+|-..+=.-++
T Consensus 180 ~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLP 259 (515)
T COG1243 180 AELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLP 259 (515)
T ss_pred cccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCccHHHHHHHHHHHHhcCcEEEEEecCCCC
Confidence 1 1467788999999999999777662 12345567788899999999665555555
Q ss_pred CCC
Q 028948 156 KSD 158 (201)
Q Consensus 156 ~~d 158 (201)
++|
T Consensus 260 gs~ 262 (515)
T COG1243 260 GSD 262 (515)
T ss_pred CCC
Confidence 444
No 435
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=41.64 E-value=47 Score=29.33 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc-
Q 028948 72 IEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF- 150 (201)
Q Consensus 72 L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~- 150 (201)
||+|+.- | .+..|+|... .. ..-.+.+...|||.|-|.-=--.++.++...+|+.++..|..+..-+
T Consensus 10 lk~~l~~----g-~~~~g~~~~~---~s----p~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp 77 (256)
T PRK10558 10 FKAALAA----K-QVQIGCWSAL---AN----PITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVP 77 (256)
T ss_pred HHHHHHc----C-CceEEEEEcC---CC----cHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECC
Confidence 6666554 3 2334666531 11 24455667889999999999999999999999999999998764322
Q ss_pred --ccccCCCCcccccc
Q 028948 151 --AVMFNKSDIPSDRD 164 (201)
Q Consensus 151 --g~k~~~~dl~ag~~ 164 (201)
.-...+.-+++|++
T Consensus 78 ~~~~~~i~r~LD~Ga~ 93 (256)
T PRK10558 78 TNEPVIIKRLLDIGFY 93 (256)
T ss_pred CCCHHHHHHHhCCCCC
Confidence 22222344666665
No 436
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=41.58 E-value=65 Score=26.97 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHh-CCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC-cccC---ChhHHHHHHHHHHHC-C
Q 028948 70 PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG-SLEI---PEETLLRYVRLVKSA-G 143 (201)
Q Consensus 70 ~~L~eKI~l~~~-~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdG-ti~i---~~~~r~~lI~~~~~~-G 143 (201)
+.+++.++.+|+ .++.+.++.- ..++ ...+.+.|+|+|-++.+ .... .......+++++++. +
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~----------t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~ 173 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS----------TLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG 173 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC----------CHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC
Confidence 458899999999 8998877521 1122 24567899999977532 2111 112224566666655 7
Q ss_pred CeEccccccccCC---CCcccccc
Q 028948 144 LKAKPKFAVMFNK---SDIPSDRD 164 (201)
Q Consensus 144 f~v~pE~g~k~~~---~dl~ag~~ 164 (201)
..|...-|++... .-+++|++
T Consensus 174 iPvia~GGI~t~~~~~~~l~~Gad 197 (221)
T PRK01130 174 CPVIAEGRINTPEQAKKALELGAH 197 (221)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCC
Confidence 8888899997543 34566766
No 437
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=41.56 E-value=1.1e+02 Score=30.18 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=64.9
Q ss_pred chhHHHHHHHhhcccc-------------------------cEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--c
Q 028948 39 SHNVLEDIFESMGQFV-------------------------DGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--D 90 (201)
Q Consensus 39 g~~~l~DlLe~ag~yI-------------------------D~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--t 90 (201)
...+.+.+|..+-+++ +.+.+.+.| -|..+-.+++++++++|+ .++.| +
T Consensus 150 ~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEt---RPD~i~~e~L~~L~~~G~~rVslGVQS 226 (522)
T TIGR01211 150 DLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIET---RPDYCREEHIDRMLKLGATRVELGVQT 226 (522)
T ss_pred CHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEE---cCCcCCHHHHHHHHHcCCCEEEEECcc
Confidence 5667777777665554 356666655 566667899999999999 78888 6
Q ss_pred HHHHHHHh---C--CchHHHHHHHHHHcCCCEEEecCC-cccCChhHHHHHHHHHHH
Q 028948 91 WAEHLIRN---G--PSAFKEYVEDCKQVGFDTIELNVG-SLEIPEETLLRYVRLVKS 141 (201)
Q Consensus 91 lfE~al~q---g--~~~~~eyl~~~k~lGFd~IEISdG-ti~i~~~~r~~lI~~~~~ 141 (201)
+-+..+.. + .+.+.+-++.+++.||. |+-- -..+|-++..+.++.++.
T Consensus 227 ~~d~VL~~inRght~~~v~~Ai~~lr~~G~~---v~~~LM~GLPgqt~e~~~~t~~~ 280 (522)
T TIGR01211 227 IYNDILERTKRGHTVRDVVEATRLLRDAGLK---VVYHIMPGLPGSSFERDLEMFRE 280 (522)
T ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHcCCe---EEEEeecCCCCCCHHHHHHHHHH
Confidence 77766643 2 13455667788999994 4422 346676666666655554
No 438
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.53 E-value=41 Score=31.70 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=51.7
Q ss_pred chhHHHHHHHhh-ccc--ccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-c---HHHHHH---------HhC--C
Q 028948 39 SHNVLEDIFESM-GQF--VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-D---WAEHLI---------RNG--P 100 (201)
Q Consensus 39 g~~~l~DlLe~a-g~y--ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-t---lfE~al---------~qg--~ 100 (201)
+++.++++++.- -++ +|.-|.|+ +++ .++..++|+.|||.++|. + ....+. ..+ +
T Consensus 305 ~~~~~~~ll~~~a~dil~~d~~~~GG----it~---~~kia~lA~a~gi~~~pH~s~~~~~a~~~~~~~~~~~~~~~~~~ 377 (415)
T cd03324 305 NRVVFKQLLQAGAIDVVQIDSCRLGG----VNE---NLAVLLMAAKFGVPVCPHAGGVGLCELVQHLSMIDYICVSGSKE 377 (415)
T ss_pred CHHHHHHHHHcCCCCEEEeCccccCC----HHH---HHHHHHHHHHcCCeEEEcCCHHHHHHHHHHhhcccccccCCccc
Confidence 777888888742 232 34455565 332 678899999999999985 2 233221 111 1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChh
Q 028948 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEE 130 (201)
Q Consensus 101 ~~~~eyl~~~k~lGFd~IEISdGti~i~~~ 130 (201)
+.+-+|++...++=.+-+++.||.+.+|+.
T Consensus 378 ~~~~e~~~~~~~~~~~~~~~~dG~l~lp~~ 407 (415)
T cd03324 378 GRVIEYVDHLHEHFVYPVVIQNGAYMPPTD 407 (415)
T ss_pred cchhhhHHHHHhhccCCCeeeCCEEECCCC
Confidence 123555544444444567888999888753
No 439
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=41.50 E-value=65 Score=25.74 Aligned_cols=42 Identities=17% Similarity=0.072 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (201)
..+++++.+.+.+.+.|=+|.-...- ...-.++++++++.|+
T Consensus 42 p~e~i~~~a~~~~~d~V~lS~~~~~~-~~~~~~~~~~L~~~~~ 83 (137)
T PRK02261 42 SQEEFIDAAIETDADAILVSSLYGHG-EIDCRGLREKCIEAGL 83 (137)
T ss_pred CHHHHHHHHHHcCCCEEEEcCccccC-HHHHHHHHHHHHhcCC
Confidence 45666666666677777776544432 2233466666666655
No 440
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=41.46 E-value=68 Score=23.39 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHhCCc-eecCc-c-HHHHHHHhC
Q 028948 68 PKPFIEEVVKRAHQHDV-YVSTG-D-WAEHLIRNG 99 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV-~v~~G-t-lfE~al~qg 99 (201)
+++.|++.|.=+-+.|= ..-|| | +||..|.+-
T Consensus 14 s~~elk~~I~daI~sgEEk~LPGLGVlFE~~W~~~ 48 (65)
T TIGR03092 14 TKEQLEATIVDAIQSGEEKMLPGLGVLFEAIWKHA 48 (65)
T ss_pred CHHHHHHHHHHHHhccchhcCCccHHHHHHHHHhc
Confidence 35678999988888776 56678 7 999999874
No 441
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=41.34 E-value=71 Score=23.94 Aligned_cols=68 Identities=12% Similarity=0.021 Sum_probs=43.7
Q ss_pred hHHHHHHH-HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCCCCcccccccccccEEEecccC-cC
Q 028948 102 AFKEYVED-CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS-TD 179 (201)
Q Consensus 102 ~~~eyl~~-~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~~~~dl~ag~~~a~g~~Vi~E~Re-s~ 179 (201)
...+..+. ++.+|+.+..++.... ++...+.|.-|...++.+ . .....|++|++.+.. .+
T Consensus 45 ~~~~l~~~~a~~~G~~~~~~~~~~~----------~~~~l~~~~Pvi~~~~~~-----~---~~~~~gH~vVv~g~~~~~ 106 (141)
T cd02549 45 YPKPIVSAAARKYGLVVRPLTGLLA----------LLRQLAAGHPVIVSVNLG-----V---SITPSGHAMVVIGYDRKG 106 (141)
T ss_pred CHHHHHHHHHhhCCCcEEECCCHHH----------HHHHHHCCCeEEEEEecC-----c---ccCCCCeEEEEEEEcCCC
Confidence 45566667 8999999876655221 555566788887765541 1 111235799999887 77
Q ss_pred eeccccCCc
Q 028948 180 KLFLASNPE 188 (201)
Q Consensus 180 ~v~~~~~~~ 188 (201)
.+ ...+|.
T Consensus 107 ~~-~i~DP~ 114 (141)
T cd02549 107 NV-YVNDPG 114 (141)
T ss_pred CE-EEECCC
Confidence 87 455665
No 442
>PRK06769 hypothetical protein; Validated
Probab=41.27 E-value=69 Score=25.92 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=33.2
Q ss_pred cccChhHHHHHHHHHHhCCceecCcc-HHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 028948 65 SLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (201)
Q Consensus 65 ~l~p~~~L~eKI~l~~~~gV~v~~Gt-lfE~al~qg~~~~~eyl~~~k~lGFd~IE 119 (201)
.++|. +++.++.+|+.|++++--| --+.. ++......+.+..+.+||+.+=
T Consensus 28 ~~~pg--v~e~L~~Lk~~G~~l~I~Tn~~~~~--~~~~~~~~~~~~l~~~g~~~~~ 79 (173)
T PRK06769 28 TLFPF--TKASLQKLKANHIKIFSFTNQPGIA--DGIATIADFVQELKGFGFDDIY 79 (173)
T ss_pred EECCC--HHHHHHHHHHCCCEEEEEECCchhc--CCcCCHHHHHHHHHhCCcCEEE
Confidence 46776 8999999999998666421 11222 2222456777778889997653
No 443
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=41.12 E-value=87 Score=26.70 Aligned_cols=84 Identities=18% Similarity=0.299 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCceecCc-----cHHHHHHHhCCc-------------hHHHHHHHHHHcCCCEEEecCCcccCChhHHH
Q 028948 72 IEEVVKRAHQHDVYVSTG-----DWAEHLIRNGPS-------------AFKEYVEDCKQVGFDTIELNVGSLEIPEETLL 133 (201)
Q Consensus 72 L~eKI~l~~~~gV~v~~G-----tlfE~al~qg~~-------------~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~ 133 (201)
+.+-.++++..||++.-+ .|++.+-..... ++++=.+.++++|||.. .-|+.+|+-...
T Consensus 44 ~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~F---tTTL~~Sp~k~~ 120 (176)
T PF02677_consen 44 LEELKRFAEKLGIPLIEGDYDPEEWLRAVKGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYF---TTTLLISPYKNH 120 (176)
T ss_pred HHHHHHHHHHcCCCEEecCCCHHHHHHHHhhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEE---EccccCcCccCH
Confidence 456677888899977654 388776543211 57888899999999998 467888888887
Q ss_pred HHHHHHHHCCCeEccccccccCCCCccc
Q 028948 134 RYVRLVKSAGLKAKPKFAVMFNKSDIPS 161 (201)
Q Consensus 134 ~lI~~~~~~Gf~v~pE~g~k~~~~dl~a 161 (201)
++|..+ |-.+--+.|++|--.|+..
T Consensus 121 ~~I~~i---G~~~~~~~gv~f~~~DfRk 145 (176)
T PF02677_consen 121 ELINEI---GERLAKEYGVEFLYRDFRK 145 (176)
T ss_pred HHHHHH---HHHHHHhhCCeEEeecccc
Confidence 777654 3345555677777777766
No 444
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=40.96 E-value=64 Score=28.29 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=64.0
Q ss_pred HHHHHHHhCCceec--C---c--------cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH
Q 028948 74 EVVKRAHQHDVYVS--T---G--------DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK 140 (201)
Q Consensus 74 eKI~l~~~~gV~v~--~---G--------tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~ 140 (201)
+.--|.+++||... | | +|-.-.+..+..++++-++.+++.|....+ .++++ .++++...
T Consensus 50 DLayLL~~f~v~~~f~T~TlGvnp~y~~~~FY~~~~~~D~~RV~~lF~~A~~~gi~V~~---rsvs~-----~ei~~hl~ 121 (212)
T PF09778_consen 50 DLAYLLRRFGVRHSFYTVTLGVNPNYSVESFYKKNFDEDENRVNRLFQKAKAAGINVEK---RSVSI-----QEIIEHLS 121 (212)
T ss_pred HHHHHHHHcCCCeeEecCccccCcCccccchHHHhhhhHHHHHHHHHHHHHHcCCceEE---eeccH-----HHHHHHHh
Confidence 34456778888432 2 3 233334444446899999999999965444 44443 35666666
Q ss_pred HCCCeEccccccccCCCCc-------------ccccccccccEEEecccC--cCeeccccCCcee
Q 028948 141 SAGLKAKPKFAVMFNKSDI-------------PSDRDRAFGAYVARAPRS--TDKLFLASNPEIE 190 (201)
Q Consensus 141 ~~Gf~v~pE~g~k~~~~dl-------------~ag~~~a~g~~Vi~E~Re--s~~v~~~~~~~~~ 190 (201)
+.| .++.-+....-.-|+ .....+=.|+||++-+=. ++.+ .|-||+--
T Consensus 122 ~g~-~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~~~-~yrdPa~~ 184 (212)
T PF09778_consen 122 SGG-PAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATKEF-EYRDPASS 184 (212)
T ss_pred CCC-cEEEEEccccccChhhcccccccccccccCCCCCccEEEEEEEeecCCCCeE-EEeCCccc
Confidence 777 665544443333221 122233559999998744 4555 99999853
No 445
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=40.88 E-value=1.1e+02 Score=28.94 Aligned_cols=85 Identities=20% Similarity=0.343 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc------------------cCChhHHHHHHHHHHHCCCeE----ccccccccCCCC
Q 028948 101 SAFKEYVEDCKQVGFDTIELNVGSL------------------EIPEETLLRYVRLVKSAGLKA----KPKFAVMFNKSD 158 (201)
Q Consensus 101 ~~~~eyl~~~k~lGFd~IEISdGti------------------~i~~~~r~~lI~~~~~~Gf~v----~pE~g~k~~~~d 158 (201)
+.+.+-++.++++|++.+=|.||-- ..|.. ...+++.+++.||++ -||.-- ..++
T Consensus 58 ~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~G-l~~l~~~i~~~Gmk~GlW~ePe~v~--~~S~ 134 (394)
T PF02065_consen 58 EKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNG-LKPLADYIHSLGMKFGLWFEPEMVS--PDSD 134 (394)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTH-HHHHHHHHHHTT-EEEEEEETTEEE--SSSC
T ss_pred HHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCc-HHHHHHHHHHCCCeEEEEecccccc--chhH
Confidence 4788999999999999999999963 23333 558999999999998 454431 2233
Q ss_pred ccccccc-cc--ccEEEecccCcCeeccccCCce
Q 028948 159 IPSDRDR-AF--GAYVARAPRSTDKLFLASNPEI 189 (201)
Q Consensus 159 l~ag~~~-a~--g~~Vi~E~Res~~v~~~~~~~~ 189 (201)
+-....+ .+ +......+|..-.| +.+||+.
T Consensus 135 l~~~hPdw~l~~~~~~~~~~r~~~vL-D~~~pev 167 (394)
T PF02065_consen 135 LYREHPDWVLRDPGRPPTLGRNQYVL-DLSNPEV 167 (394)
T ss_dssp HCCSSBGGBTCCTTSE-ECBTTBEEB--TTSHHH
T ss_pred HHHhCccceeecCCCCCcCcccceEE-cCCCHHH
Confidence 3222111 11 11445667776555 8889873
No 446
>PLN02161 beta-amylase
Probab=40.86 E-value=58 Score=32.30 Aligned_cols=68 Identities=22% Similarity=0.163 Sum_probs=45.8
Q ss_pred hCCceecCccHHHHHH--------HhCCchHHHHHHHHHHcCCCEEEecC--------CcccCChhHHHHHHHHHHHCCC
Q 028948 81 QHDVYVSTGDWAEHLI--------RNGPSAFKEYVEDCKQVGFDTIELNV--------GSLEIPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 81 ~~gV~v~~GtlfE~al--------~qg~~~~~eyl~~~k~lGFd~IEISd--------Gti~i~~~~r~~lI~~~~~~Gf 144 (201)
..+|+||-+--++.+- .++++.+...|+.+|.+|+|.|+|.. |--.-.=.--+++.+++++.||
T Consensus 89 ~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GL 168 (531)
T PLN02161 89 HKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGL 168 (531)
T ss_pred CCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCC
Confidence 3456666543333321 23345799999999999999998853 3333344556789999999999
Q ss_pred eEcc
Q 028948 145 KAKP 148 (201)
Q Consensus 145 ~v~p 148 (201)
|+.+
T Consensus 169 Klq~ 172 (531)
T PLN02161 169 KLHV 172 (531)
T ss_pred eEEE
Confidence 9843
No 447
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=40.72 E-value=53 Score=26.42 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=43.6
Q ss_pred HHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCc---eecCcc-HHHHHHHhCCchHHHHHHHHHHcCCC
Q 028948 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFD 116 (201)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~Gt-lfE~al~qg~~~~~eyl~~~k~lGFd 116 (201)
..+.+++.|-++ .|++=++. ..-.....+++-+++++++|+ ++.-|| .. -.++.+++..++++++||+
T Consensus 38 ~~e~~v~aa~~~~adiVglS~--L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~-----i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSS--LYGHGEIDCKGLREKCDEAGLKDILLYVGGNLV-----VGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEec--cccCCHHHHHHHHHHHHHCCCCCCeEEEECCCC-----CChhhhHHHHHHHHHcCCC
Confidence 446666665543 45554433 111222347888888888865 444565 21 1223566777888999998
Q ss_pred EEEecCCc
Q 028948 117 TIELNVGS 124 (201)
Q Consensus 117 ~IEISdGt 124 (201)
.| +..|+
T Consensus 111 ~v-f~pgt 117 (128)
T cd02072 111 RV-FAPGT 117 (128)
T ss_pred EE-ECcCC
Confidence 87 44444
No 448
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.51 E-value=56 Score=26.42 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=49.2
Q ss_pred HHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCc---eecCccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 028948 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (201)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~ 117 (201)
..+++++.+=++ .|.+=++. ..-.....+++-++.+++.|+ .+.-||-.-+ .++.+++-.++++++||+.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~--l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi----~~~d~~~~~~~l~~~Gv~~ 113 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSS--LYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVV----GKQDFPDVEKRFKEMGFDR 113 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEec--ccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCc----ChhhhHHHHHHHHHcCCCE
Confidence 345555555443 45554332 112222347888888888864 4545542111 1124455566788899988
Q ss_pred EEecCCcccCChhHHHHHHHHH
Q 028948 118 IELNVGSLEIPEETLLRYVRLV 139 (201)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~ 139 (201)
| ++.|+ |.++-.++|++.
T Consensus 114 v-F~pgt---~~~~iv~~l~~~ 131 (134)
T TIGR01501 114 V-FAPGT---PPEVVIADLKKD 131 (134)
T ss_pred E-ECcCC---CHHHHHHHHHHH
Confidence 7 56666 556666666654
No 449
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=40.47 E-value=1.4e+02 Score=24.03 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=68.9
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC---cc--------H
Q 028948 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GD--------W 91 (201)
Q Consensus 23 ~~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~---Gt--------l 91 (201)
..|++.+.+++.++. ..++.-++.+-+--|.+=+-.+...+.+.+.|++.++.++.++.-+.| || +
T Consensus 63 ~~~v~~i~~~~~G~~---~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~~~~vi~p~~~GG~p~l~~~~~ 139 (195)
T TIGR03552 63 NLGAPVLRDPGPGLN---NALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATEGDVVIAPDRGGGTNALFLRPP 139 (195)
T ss_pred hcCCEEEecCCCCHH---HHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhcccCCEEEEecCCCCeeEEEECCC
Confidence 347888888774222 233333332211124566777888888999999999988766554443 43 1
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHH
Q 028948 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 138 (201)
Q Consensus 92 fE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~ 138 (201)
++.....+.+.+.+-+..+.+.+...+++.+-.+.++-|+...|-+.
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DiDtp~Dl~~~ 186 (195)
T TIGR03552 140 SALRPAFGGDSFLRHRRSAAKRGLRVRIYDSFGLALDVDTPEDLAEA 186 (195)
T ss_pred CccCCCcCchHHHHHHHHHHHcCCceEeecCCceeecCCCHHHHHHH
Confidence 11222334456777788888899999999887654554554455443
No 450
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=40.40 E-value=1.3e+02 Score=26.98 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=43.9
Q ss_pred cChhHHHHHHHHHHhCCceecCccHHHHHHHhC---------C---chHHHHHHHHHHcCCCEEEecCCcccCChhHHHH
Q 028948 67 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG---------P---SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134 (201)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg---------~---~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~ 134 (201)
.+.+.|++.++.+++++|++-. =|++.-+..+ + ...+++++++++.||..|=+-+=.+.... .
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~-i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~----~ 95 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDV-IVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPET----E 95 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccE-EEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCC----h
Confidence 4667799999999999986632 1222221111 0 02456777777777766655544444322 2
Q ss_pred HHHHHHHCCCeEccc
Q 028948 135 YVRLVKSAGLKAKPK 149 (201)
Q Consensus 135 lI~~~~~~Gf~v~pE 149 (201)
.-+.+++.|+-|+..
T Consensus 96 ~y~e~~~~g~~v~~~ 110 (319)
T cd06591 96 NYKEMDEKGYLIKTD 110 (319)
T ss_pred hHHHHHHCCEEEEcC
Confidence 345555666666543
No 451
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=40.28 E-value=22 Score=31.41 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.4
Q ss_pred cCChhHHHHHHHHHHHCCCeEccccccc
Q 028948 126 EIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~pE~g~k 153 (201)
..+.++-.++|+.|+++|..|+||+-.-
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~P 96 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTP 96 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCc
Confidence 7888999999999999999999998653
No 452
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=40.00 E-value=77 Score=26.92 Aligned_cols=43 Identities=33% Similarity=0.444 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCEEEec-CCcccCChhHHHHHHHHHHHCCCeE
Q 028948 104 KEYVEDCKQVGFDTIELN-VGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 104 ~eyl~~~k~lGFd~IEIS-dGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
++.++.++++|||++-+. |=..+-..+-..+.++.+++.|+..
T Consensus 63 ~~~~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~ 106 (239)
T smart00854 63 PENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAH 106 (239)
T ss_pred HHHHHHHHHhCCCEEEeccCcccccchHHHHHHHHHHHHCCCCE
Confidence 678999999999999998 7799999999999999999888776
No 453
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=39.91 E-value=1.1e+02 Score=29.04 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=60.8
Q ss_pred chhHHHHHHHhhcc---cccEEEeeC-ccccccChhHHHHHHHHHHhC--Cceec--C-ccHHHHHHHhCCchHHHHHHH
Q 028948 39 SHNVLEDIFESMGQ---FVDGLKFSG-GSHSLMPKPFIEEVVKRAHQH--DVYVS--T-GDWAEHLIRNGPSAFKEYVED 109 (201)
Q Consensus 39 g~~~l~DlLe~ag~---yID~lKfg~-GTs~l~p~~~L~eKI~l~~~~--gV~v~--~-GtlfE~al~qg~~~~~eyl~~ 109 (201)
.+.++-+.+..... -++.+-|++ |=..+.++. +.+-+..+++. |+.++ | |.+ +.+++++
T Consensus 61 tpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~-~~~~l~~~~~~~~~i~i~lsTNG~~-----------l~e~i~~ 128 (442)
T TIGR01290 61 TPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGK-TFQTLELVARQLPDVKLCLSTNGLM-----------LPEHVDR 128 (442)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccc-cHHHHHHHHHhcCCCeEEEECCCCC-----------CHHHHHH
Confidence 34455444444433 368888988 777776654 66666777765 66554 4 422 2456777
Q ss_pred HHHcCCCEEEecCCcccCCh-------------------------hHHHHHHHHHHHCCCeEc
Q 028948 110 CKQVGFDTIELNVGSLEIPE-------------------------ETLLRYVRLVKSAGLKAK 147 (201)
Q Consensus 110 ~k~lGFd~IEISdGti~i~~-------------------------~~r~~lI~~~~~~Gf~v~ 147 (201)
+.++|+|.|-||=-.++=.. +.-++-|+.+++.|..|+
T Consensus 129 L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~ 191 (442)
T TIGR01290 129 LVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVK 191 (442)
T ss_pred HHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEE
Confidence 88899999999876653111 111356778888998763
No 454
>PRK05588 histidinol-phosphatase; Provisional
Probab=39.87 E-value=99 Score=26.53 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhCCc--eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh--HHHHHHHHHHHCCCe
Q 028948 70 PFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGLK 145 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV--~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~--~r~~lI~~~~~~Gf~ 145 (201)
+.+++.++.+.++|+ .+.++++.- ..... -....++.|+++|...|-|+...-....= ...+.++.+++.||+
T Consensus 166 ~~~~~il~~~~~~g~~lEINt~~l~~-~~~~~--~~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~~~~~~~~~l~~~G~~ 242 (255)
T PRK05588 166 EIIDEILKVLIEKEKVLEINTRRLDD-KRSVE--NLVKIYKRFYELGGKYITLGSDAHNIEDIGNNFKFALEIAEYCNLK 242 (255)
T ss_pred HHHHHHHHHHHHcCCEEEEECcccCC-CCCCC--CHHHHHHHHHHcCCcEEEEECCCCCHHHHHhhHHHHHHHHHHcCCE
Confidence 457888888888888 455665431 11122 34667888899988877777766544332 356788888888888
Q ss_pred E
Q 028948 146 A 146 (201)
Q Consensus 146 v 146 (201)
+
T Consensus 243 ~ 243 (255)
T PRK05588 243 P 243 (255)
T ss_pred E
Confidence 4
No 455
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=39.78 E-value=75 Score=26.81 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCEEEec-CCcccCChhHHHHHHHHHHHCCCeE
Q 028948 103 FKEYVEDCKQVGFDTIELN-VGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 103 ~~eyl~~~k~lGFd~IEIS-dGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
=++.++..+++|||++-+. |=..+...+...+.++.+++.|+..
T Consensus 66 ~~~~~~~L~~~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~ 110 (239)
T cd07381 66 PPEVADALKAAGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAH 110 (239)
T ss_pred CHHHHHHHHHhCCCEEEcccccccccchHHHHHHHHHHHHcCCce
Confidence 3678899999999999997 7889999999989999888888875
No 456
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=39.67 E-value=1e+02 Score=27.88 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=55.3
Q ss_pred EeeCccccccChhHHHHHHHHHHhC---CceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----
Q 028948 58 KFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI---- 127 (201)
Q Consensus 58 Kfg~GTs~l~p~~~L~eKI~l~~~~---gV~v~~--G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i---- 127 (201)
|-|.|++.+-..+.+.+.++-.++. +++|+- - ||-+ .+...++.+.+.+.|.+.|-|+.++..=
T Consensus 105 ~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~------~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g 178 (312)
T PRK10550 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDS------GERKFEIADAVQQAGATELVVHGRTKEDGYRA 178 (312)
T ss_pred cCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCC------chHHHHHHHHHHhcCCCEEEECCCCCccCCCC
Confidence 7788888888989999998888774 354442 2 4421 1245688888999999999999887522
Q ss_pred ChhHHHHHHHHHHHC
Q 028948 128 PEETLLRYVRLVKSA 142 (201)
Q Consensus 128 ~~~~r~~lI~~~~~~ 142 (201)
+.-+| ++|+++++.
T Consensus 179 ~~~~~-~~i~~ik~~ 192 (312)
T PRK10550 179 EHINW-QAIGEIRQR 192 (312)
T ss_pred CcccH-HHHHHHHhh
Confidence 22244 778888876
No 457
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=39.64 E-value=55 Score=29.36 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=11.0
Q ss_pred ccChhHHHHHHHHHHhCCc
Q 028948 66 LMPKPFIEEVVKRAHQHDV 84 (201)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV 84 (201)
+++.+.+.+.++.++++|+
T Consensus 71 ~ls~eei~~~~~~~~~~G~ 89 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGG 89 (340)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 3445556666666666665
No 458
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=39.57 E-value=69 Score=30.30 Aligned_cols=82 Identities=24% Similarity=0.421 Sum_probs=55.1
Q ss_pred cccccEEEeeCcccc------ccC-hhHHHHHHHHHHhCCceecCc---c-HHHHHHHh-CC------chHHHHHHHHHH
Q 028948 51 GQFVDGLKFSGGSHS------LMP-KPFIEEVVKRAHQHDVYVSTG---D-WAEHLIRN-GP------SAFKEYVEDCKQ 112 (201)
Q Consensus 51 g~yID~lKfg~GTs~------l~p-~~~L~eKI~l~~~~gV~v~~G---t-lfE~al~q-g~------~~~~eyl~~~k~ 112 (201)
.+++|-+-+==|.-. +-+ ++.+++.++.|+++||++--| | |=+..+.+ ++ .+.-+|++.|.+
T Consensus 92 ~~~v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~ 171 (359)
T PF04551_consen 92 IEAVDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEE 171 (359)
T ss_dssp HHC-SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 344999999888752 244 788999999999999988765 3 43333322 11 256789999999
Q ss_pred cCCCEEEecCCcccCChhHH
Q 028948 113 VGFDTIELNVGSLEIPEETL 132 (201)
Q Consensus 113 lGFd~IEISdGti~i~~~~r 132 (201)
+||+-|=||-=+-+++.--+
T Consensus 172 ~~f~~iviSlKsSdv~~~i~ 191 (359)
T PF04551_consen 172 LGFDDIVISLKSSDVPETIE 191 (359)
T ss_dssp CT-GGEEEEEEBSSHHHHHH
T ss_pred CCCCcEEEEEEeCChHHHHH
Confidence 99999999987777665433
No 459
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=39.47 E-value=85 Score=26.13 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=53.3
Q ss_pred CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccc-cccCCCCccc
Q 028948 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA-VMFNKSDIPS 161 (201)
Q Consensus 83 gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~g-~k~~~~dl~a 161 (201)
+|++-.+++ . .-++.++.|.+.|.|.|=+..- .++.++-.++++.++..|+.+.+++. .+....-.+.
T Consensus 72 ~iPi~~~~~-------i--~~~~~v~~~~~~Gad~v~l~~~--~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~ 140 (217)
T cd00331 72 SLPVLRKDF-------I--IDPYQIYEARAAGADAVLLIVA--ALDDEQLKELYELARELGMEVLVEVHDEEELERALAL 140 (217)
T ss_pred CCCEEECCe-------e--cCHHHHHHHHHcCCCEEEEeec--cCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHc
Confidence 777776551 1 1224789999999999998444 45567778999999999999866653 2112233445
Q ss_pred ccccccccEEEecccC
Q 028948 162 DRDRAFGAYVARAPRS 177 (201)
Q Consensus 162 g~~~a~g~~Vi~E~Re 177 (201)
|.+ ++.+.+|.
T Consensus 141 g~~-----~i~~t~~~ 151 (217)
T cd00331 141 GAK-----IIGINNRD 151 (217)
T ss_pred CCC-----EEEEeCCC
Confidence 666 88777665
No 460
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=39.46 E-value=30 Score=30.98 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=38.8
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEE-----EeeCccccccChhHHHHHHHHHHhCCceecCccHHH
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-----KFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAE 93 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~l-----Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE 93 (201)
.++..+.|=.+ . ++..++.+++.- -+|++ |.|+ +.+ .++.+++|+++|+.+++|++.|
T Consensus 239 ~~ipi~~dE~~--~-~~~~~~~~i~~~--~~d~v~~k~~~~GG----i~~---~~~i~~~a~~~g~~~~~~~~~~ 301 (357)
T cd03316 239 TSVPIAAGENL--Y-TRWEFRDLLEAG--AVDIIQPDVTKVGG----ITE---AKKIAALAEAHGVRVAPHGAGG 301 (357)
T ss_pred CCCCEEecccc--c-cHHHHHHHHHhC--CCCEEecCccccCC----HHH---HHHHHHHHHHcCCeEeccCCCC
Confidence 34555555543 4 667777777643 25555 5565 332 6788899999999999987644
No 461
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=39.44 E-value=84 Score=25.44 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=28.7
Q ss_pred cChhHHHHHHHHHHhC--CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 028948 67 MPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (201)
Q Consensus 67 ~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGt 124 (201)
++.+.+.+.|+-++.. +|.+ +|| | +++. .+.++++.+|+.|+...=.++++
T Consensus 46 lt~eel~~~I~~~~~~~~gVt~-SGG--E--l~~~--~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 46 LTPEYLTKTLDKYRSLISCVLF-LGG--E--WNRE--ALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred CCHHHHHHHHHHhCCCCCEEEE-ech--h--cCHH--HHHHHHHHHHHCCCCEEEECCCC
Confidence 3444455666555421 3333 343 3 3433 78888888999888763335444
No 462
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=39.35 E-value=1.1e+02 Score=26.66 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=29.4
Q ss_pred HHhCCceecC--ccH------HHHHHHhC---CchHHHHHHHHHHcCCCEEEecCCcccC
Q 028948 79 AHQHDVYVST--GDW------AEHLIRNG---PSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (201)
Q Consensus 79 ~~~~gV~v~~--Gtl------fE~al~qg---~~~~~eyl~~~k~lGFd~IEISdGti~i 127 (201)
.+..|+++.+ |+| |..++... ..-++.-++.+++.|||.|+|+=-....
T Consensus 69 ~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~ 128 (343)
T PF00704_consen 69 AKNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSS 128 (343)
T ss_dssp HHHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTS
T ss_pred hhccCceEEEEeccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccc
Confidence 4556898765 655 44444211 0136777788899999999996554444
No 463
>PLN02621 nicotinamidase
Probab=39.33 E-value=91 Score=25.81 Aligned_cols=78 Identities=14% Similarity=0.017 Sum_probs=57.2
Q ss_pred EEEeeCccccccChhHHHHHHHHHHhCCce--ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH
Q 028948 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL 133 (201)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~--v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~ 133 (201)
+-|- ..+++.+.+ |.+ .++++||. +..|--.++|+.+- ...+.++||+++=++|++-+.+++...
T Consensus 105 i~K~--~~saf~~t~-L~~---~L~~~gi~~lvi~Gv~T~~CV~~T-------a~~a~~~gy~v~v~~Da~as~~~~~h~ 171 (197)
T PLN02621 105 VEKS--TYSAFYNTR-LEE---RLRKIGVKEVIVTGVMTNLCCETT-------AREAFVRGFRVFFSTDATATANEELHE 171 (197)
T ss_pred EECC--CcCCCCCCc-HHH---HHHHCCCCEEEEEecccchhHHHH-------HHHHHHCCCEEEEeccccCCCCHHHHH
Confidence 3464 345555542 443 45789983 44477889998884 355678999999999999999999988
Q ss_pred HHHHHHHHCCCeE
Q 028948 134 RYVRLVKSAGLKA 146 (201)
Q Consensus 134 ~lI~~~~~~Gf~v 146 (201)
..++..+..+-.+
T Consensus 172 ~al~~~~~~~~~v 184 (197)
T PLN02621 172 ATLKNLAYGFAYL 184 (197)
T ss_pred HHHHHHHhhceEe
Confidence 8899888775444
No 464
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=39.30 E-value=1.9e+02 Score=23.34 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=56.9
Q ss_pred HHHHHHHhhcccccEEEeeCcccccc-ChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 028948 42 VLEDIFESMGQFVDGLKFSGGSHSLM-PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~-p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEI 120 (201)
.+.++|+..+-.-+-+-|-.--.... ..+.+.+.++.++++|+.+....+ ..+ ..-++.+..+.+|.|-|
T Consensus 104 ~l~~~l~~~~~~~~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~~ialddf-----g~~----~~~~~~l~~l~~d~iKl 174 (241)
T smart00052 104 RVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALDDF-----GTG----YSSLSYLKRLPVDLLKI 174 (241)
T ss_pred HHHHHHHHcCCCHHHEEEEEeChhhhcChHHHHHHHHHHHHCCCEEEEeCC-----CCc----HHHHHHHHhCCCCeEEE
Confidence 34455555444444455554333332 233345778888888887775321 000 01133445677888888
Q ss_pred cCCcccCC------hhHHHHHHHHHHHCCCeEcccccccc
Q 028948 121 NVGSLEIP------EETLLRYVRLVKSAGLKAKPKFAVMF 154 (201)
Q Consensus 121 SdGti~i~------~~~r~~lI~~~~~~Gf~v~pE~g~k~ 154 (201)
+-..+.-- ......+++.+++.|.+|..| |+..
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~-gVe~ 213 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE-GVET 213 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe-cCCC
Confidence 87665321 123455677788888888665 4443
No 465
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=39.22 E-value=54 Score=29.63 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHCCCeEcccc
Q 028948 129 EETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 129 ~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
-|-...+|+.|+++|++|++=+
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEE
Confidence 3556789999999999998766
No 466
>PRK04302 triosephosphate isomerase; Provisional
Probab=39.18 E-value=2.4e+02 Score=23.85 Aligned_cols=82 Identities=18% Similarity=0.162 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhCCcee--cCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC----Ccc-c---CChhHHHHHHHHH
Q 028948 70 PFIEEVVKRAHQHDVYV--STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV----GSL-E---IPEETLLRYVRLV 139 (201)
Q Consensus 70 ~~L~eKI~l~~~~gV~v--~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISd----Gti-~---i~~~~r~~lI~~~ 139 (201)
+.+++|++.++++|+.+ +.|+.- . ++.+.++|.+.|.+-. |+- . -+++.-.++++.+
T Consensus 101 ~e~~~~v~~a~~~Gl~~I~~v~~~~---------~----~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~i 167 (223)
T PRK04302 101 ADIEAVVERAKKLGLESVVCVNNPE---------T----SAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAV 167 (223)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHH---------H----HHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHH
Confidence 34889999999999843 346621 1 2234567888887532 332 2 3455556777777
Q ss_pred HHC--CCeEccccccccCC---CCcccccc
Q 028948 140 KSA--GLKAKPKFAVMFNK---SDIPSDRD 164 (201)
Q Consensus 140 ~~~--Gf~v~pE~g~k~~~---~dl~ag~~ 164 (201)
++. ...+..+.|++..+ .-+.+|+|
T Consensus 168 r~~~~~~pvi~GggI~~~e~~~~~~~~gad 197 (223)
T PRK04302 168 KKVNPDVKVLCGAGISTGEDVKAALELGAD 197 (223)
T ss_pred HhccCCCEEEEECCCCCHHHHHHHHcCCCC
Confidence 763 57888899987654 22346666
No 467
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=39.18 E-value=48 Score=31.29 Aligned_cols=116 Identities=18% Similarity=0.247 Sum_probs=80.7
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeC---ccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh--
Q 028948 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG---GSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-- 98 (201)
Q Consensus 27 TmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~---GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-- 98 (201)
|+-++=|-|.+..+..++.+|+..-++.+ .+.. =|.=.-|.+.=.+|++.++++|| .++.| +|=.-.+..
T Consensus 90 ti~~GGGTPslL~~~~l~~ll~~l~~~~~--~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lg 167 (416)
T COG0635 90 TIYFGGGTPSLLSPEQLERLLKALRELFN--DLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALG 167 (416)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcc--cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhc
Confidence 44555565443489999999999998885 2221 12234677778899999999999 99999 665555443
Q ss_pred ---CCchHHHHHHHHHHcCCCEEEecCCcccCC---hhHHHHHHHHHHHCCCe
Q 028948 99 ---GPSAFKEYVEDCKQVGFDTIELNVGSLEIP---EETLLRYVRLVKSAGLK 145 (201)
Q Consensus 99 ---g~~~~~eyl~~~k~lGFd~IEISdGti~i~---~~~r~~lI~~~~~~Gf~ 145 (201)
+.....+-++.+++.||+.|.+.= -..+| .+++.+-++.+.+.+..
T Consensus 168 R~h~~~~~~~a~~~~~~~g~~~in~DL-IyglP~QT~~~~~~~l~~a~~l~pd 219 (416)
T COG0635 168 RIHDEEEAKEAVELARKAGFTSINIDL-IYGLPGQTLESLKEDLEQALELGPD 219 (416)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEe-ecCCCCCCHHHHHHHHHHHHhCCCC
Confidence 334678889999999999998753 33444 44566666777776643
No 468
>PRK06256 biotin synthase; Validated
Probab=39.15 E-value=69 Score=28.55 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCceecC-c--cHHHHHHHh--CCchHHHH---HHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHH
Q 028948 72 IEEVVKRAHQHDVYVST-G--DWAEHLIRN--GPSAFKEY---VEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVK 140 (201)
Q Consensus 72 L~eKI~l~~~~gV~v~~-G--tlfE~al~q--g~~~~~ey---l~~~k~lGFd~IEISdGti---~i~~~~r~~lI~~~~ 140 (201)
-++.++.++++|+..+. | | -+..+.+ ....++++ ++.+++.|+ +++.|.+ .-+.+++.+.++.++
T Consensus 151 ~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi---~v~~~~I~GlgEt~ed~~~~~~~l~ 226 (336)
T PRK06256 151 TEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI---EPCSGGIIGMGESLEDRVEHAFFLK 226 (336)
T ss_pred CHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC---eeccCeEEeCCCCHHHHHHHHHHHH
Confidence 35667789999986554 4 5 3333332 12356655 456667786 4666654 356788899999999
Q ss_pred HCCCe
Q 028948 141 SAGLK 145 (201)
Q Consensus 141 ~~Gf~ 145 (201)
+.+..
T Consensus 227 ~l~~~ 231 (336)
T PRK06256 227 ELDAD 231 (336)
T ss_pred hCCCC
Confidence 88865
No 469
>PLN02705 beta-amylase
Probab=39.14 E-value=61 Score=32.96 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=45.8
Q ss_pred ceecCccHHHHHH----HhCCchHHHHHHHHHHcCCCEEEecC--------CcccCChhHHHHHHHHHHHCCCeEcc
Q 028948 84 VYVSTGDWAEHLI----RNGPSAFKEYVEDCKQVGFDTIELNV--------GSLEIPEETLLRYVRLVKSAGLKAKP 148 (201)
Q Consensus 84 V~v~~GtlfE~al----~qg~~~~~eyl~~~k~lGFd~IEISd--------Gti~i~~~~r~~lI~~~~~~Gf~v~p 148 (201)
|+||-+--++.+- ..+++.+...|+.+|.+|+|.|+|.. |--.-.=.--++|.+++++.|||+.+
T Consensus 247 VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv 323 (681)
T PLN02705 247 VPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQV 323 (681)
T ss_pred eeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEE
Confidence 7676543333321 23345799999999999999999853 33333445567899999999999833
No 470
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=39.11 E-value=2.2e+02 Score=24.55 Aligned_cols=116 Identities=10% Similarity=0.157 Sum_probs=72.4
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceec---------CccHHHH
Q 028948 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---------TGDWAEH 94 (201)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~---------~GtlfE~ 94 (201)
.++....|=|+ + .....+.+|+.-.+. .-.||.++.+.+.+++..+.+-+. |.++ +-+|.|.
T Consensus 75 ~~~pi~vGGGI--r-s~e~v~~~l~~Ga~k-----vvigt~a~~~~~~l~~~~~~fg~~-ivvslD~~~g~v~~~gw~~~ 145 (234)
T PRK13587 75 TTKDIEVGGGI--R-TKSQIMDYFAAGINY-----CIVGTKGIQDTDWLKEMAHTFPGR-IYLSVDAYGEDIKVNGWEED 145 (234)
T ss_pred cCCeEEEcCCc--C-CHHHHHHHHHCCCCE-----EEECchHhcCHHHHHHHHHHcCCC-EEEEEEeeCCEEEecCCccc
Confidence 35565666555 4 555666677754444 457999999999999988777322 3333 3346442
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHH-CCCeEccccccccC
Q 028948 95 LIRNGPSAFKEYVEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKS-AGLKAKPKFAVMFN 155 (201)
Q Consensus 95 al~qg~~~~~eyl~~~k~lGFd~IEIS----dGti~i~~~~r~~lI~~~~~-~Gf~v~pE~g~k~~ 155 (201)
-.....++++++.++|+..|=+. ||+..=++-+ +++.+.+ .+..+...=|+...
T Consensus 146 ----~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~---li~~l~~~~~ipvi~~GGi~s~ 204 (234)
T PRK13587 146 ----TELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFE---LTGQLVKATTIPVIASGGIRHQ 204 (234)
T ss_pred ----CCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHH---HHHHHHHhCCCCEEEeCCCCCH
Confidence 12367999999999998865443 4665555544 3333333 36777777676643
No 471
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=39.09 E-value=52 Score=30.02 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhC-CceecCc---cHHHHHHHhCC--chHHHHHHHHHHcC-CCEEEecCCccc
Q 028948 70 PFIEEVVKRAHQH-DVYVSTG---DWAEHLIRNGP--SAFKEYVEDCKQVG-FDTIELNVGSLE 126 (201)
Q Consensus 70 ~~L~eKI~l~~~~-gV~v~~G---tlfE~al~qg~--~~~~eyl~~~k~lG-Fd~IEISdGti~ 126 (201)
.++.|.++-.++. |..+..| ++.|.. ..|. +..-++.+.+.+.| +|.|+||.|+..
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~-~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~ 254 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDT-EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYY 254 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhcc-CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 6777888888775 4332223 233321 1111 12335556666778 999999998764
No 472
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=39.08 E-value=2.2e+02 Score=26.42 Aligned_cols=81 Identities=10% Similarity=0.055 Sum_probs=49.3
Q ss_pred cccccChhHHHHHHHHHHhCC---ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 028948 63 SHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 139 (201)
Q Consensus 63 Ts~l~p~~~L~eKI~l~~~~g---V~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~ 139 (201)
|..++-+..+++--+.++++| +-+.+|..+. ..| .+++..+.+++.|++++..++-.-+-+.++-.+.++.+
T Consensus 28 ~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~~~~---~~g--~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~ 102 (395)
T PRK15454 28 PVTLCGPGAVSSCGQQAQTRGLKHLFVMADSFLH---QAG--MTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL 102 (395)
T ss_pred CeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchh---hCc--cHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHH
Confidence 333444444666666666665 3444553332 235 67777777778888777665444455566667788888
Q ss_pred HHCCCeEcc
Q 028948 140 KSAGLKAKP 148 (201)
Q Consensus 140 ~~~Gf~v~p 148 (201)
++.+..+..
T Consensus 103 r~~~~D~Ii 111 (395)
T PRK15454 103 RESGCDGVI 111 (395)
T ss_pred HhcCcCEEE
Confidence 887776633
No 473
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=39.08 E-value=1.9e+02 Score=27.75 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=54.1
Q ss_pred hhHHHHHHHhhc--ccccEEEeeCccccccChhHHHHHHHHHHhC-Cce-ecCccHHHHHHHhCCchHHHHHHHHHHcCC
Q 028948 40 HNVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (201)
Q Consensus 40 ~~~l~DlLe~ag--~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~-v~~GtlfE~al~qg~~~~~eyl~~~k~lGF 115 (201)
...++.+++-.. .-|.-+-|++|=-.+++.+.|+..++.+++. +|. +..||=.=+.+-+- .-++.++.+++.+.
T Consensus 140 ~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~R--IT~ell~~Lk~~~~ 217 (417)
T TIGR03820 140 KEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQR--ITDELVAILKKHHP 217 (417)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccc--cCHHHHHHHHhcCC
Confidence 334444444322 2355666777777777766666656666554 443 33343222222111 22466666666665
Q ss_pred CEEEec-CCcccCChhHHHHHHHHHHHCCCeE
Q 028948 116 DTIELN-VGSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 116 d~IEIS-dGti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
.+|=++ |+--++.++.+ +.++++++.|..+
T Consensus 218 ~~v~~h~nhp~Eit~~a~-~Al~~L~~aGI~l 248 (417)
T TIGR03820 218 VWLNTHFNHPREITASSK-KALAKLADAGIPL 248 (417)
T ss_pred eEEEEeCCChHhChHHHH-HHHHHHHHcCCEE
Confidence 555443 23334443333 6677777777666
No 474
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=38.97 E-value=1e+02 Score=26.95 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=50.7
Q ss_pred ccChhHHHHHHHHHHhCCc-eec-Ccc--H--------HHHHHHhC---------CchHHHHHHHHHHcCCCEEEecCCc
Q 028948 66 LMPKPFIEEVVKRAHQHDV-YVS-TGD--W--------AEHLIRNG---------PSAFKEYVEDCKQVGFDTIELNVGS 124 (201)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV-~v~-~Gt--l--------fE~al~qg---------~~~~~eyl~~~k~lGFd~IEISdGt 124 (201)
.++.+.+.+.++.+.+.|+ .+. +|| + ++.+-..+ ...++++++.+++.|++.|-||=-+
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~ 118 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDT 118 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecC
Confidence 5677788899999999998 333 353 1 22222222 1235667777777777777777655
Q ss_pred cc----------CChhHHHHHHHHHHHCCCe
Q 028948 125 LE----------IPEETLLRYVRLVKSAGLK 145 (201)
Q Consensus 125 i~----------i~~~~r~~lI~~~~~~Gf~ 145 (201)
.+ -+.+..++-|+.+++.|+.
T Consensus 119 ~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~ 149 (302)
T TIGR02668 119 LDPEKYKKITGRGALDRVIEGIESAVDAGLT 149 (302)
T ss_pred CCHHHhhhccCCCcHHHHHHHHHHHHHcCCC
Confidence 42 2345667778888888886
No 475
>PLN02428 lipoic acid synthase
Probab=38.86 E-value=29 Score=32.38 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=41.9
Q ss_pred EeeCccccccChhHHHHHHHHHHhCCceecC-ccHH-------HHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 028948 58 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWA-------EHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (201)
Q Consensus 58 Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-Gtlf-------E~al~qg~~~~~eyl~~~k~lGFd~IEIS 121 (201)
=+|.| - .++.+.+-++.++++|+.+.| |-++ .+.-.-.|+.|++|-+.+.++||.+|+-.
T Consensus 254 MvGLG---E-T~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sg 321 (349)
T PLN02428 254 MLGLG---E-TDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASG 321 (349)
T ss_pred EEecC---C-CHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEec
Confidence 35554 2 345599999999999986655 5432 11111135689999999999999999854
No 476
>PRK14017 galactonate dehydratase; Provisional
Probab=38.68 E-value=29 Score=31.82 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=39.2
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEE-----EeeCccccccChhHHHHHHHHHHhCCceecCccHHH
Q 028948 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-----KFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAE 93 (201)
Q Consensus 25 GlTmV~DkG~s~~~g~~~l~DlLe~ag~yID~l-----Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE 93 (201)
++-...|=- +. +++.++++++.-+ +|++ |+|+ +.+ .++..++|+.|||.+++|.++|
T Consensus 228 ~~pIa~dEs--~~-~~~~~~~li~~~a--~d~v~~d~~~~GG----it~---~~~ia~~A~~~gi~~~~h~~~~ 289 (382)
T PRK14017 228 SIPIATGER--LF-SRWDFKRVLEAGG--VDIIQPDLSHAGG----ITE---CRKIAAMAEAYDVALAPHCPLG 289 (382)
T ss_pred CCCEEeCCc--cC-CHHHHHHHHHcCC--CCeEecCccccCC----HHH---HHHHHHHHHHcCCeEeecCCCC
Confidence 344444443 34 7778888888632 5555 6665 333 6788999999999999987655
No 477
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=38.67 E-value=77 Score=29.29 Aligned_cols=71 Identities=11% Similarity=0.273 Sum_probs=49.6
Q ss_pred cChhHHHHHHHHHHhCCceec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec-CCcccCChhHHHHHHHHHHHCCC
Q 028948 67 MPKPFIEEVVKRAHQHDVYVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN-VGSLEIPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~-~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEIS-dGti~i~~~~r~~lI~~~~~~Gf 144 (201)
.+++.+.--+++|++|+|.+. ||-..|. +.+ +.+.-.++|...+=.+ .-++++ .++|.++-+.+++.|+
T Consensus 50 ~~~~yv~~~l~~C~~~~Idv~~P~~~~~~-l~~-------~r~~F~a~Gv~l~~~~~~~~l~~-~~dK~~~y~~~~~~~i 120 (329)
T PF15632_consen 50 DGEEYVDWCLDFCKEHGIDVFVPGRNREL-LAA-------HRDEFEALGVKLLTASSAETLEL-ADDKAAFYEFMEANGI 120 (329)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEcCccHHH-HHH-------HHHHHHHhCCEEEecCCHHHHHH-HhhHHHHHHHHHhCCC
Confidence 345778889999999999776 6855555 333 3344567888777634 333444 5667799999999999
Q ss_pred eE
Q 028948 145 KA 146 (201)
Q Consensus 145 ~v 146 (201)
-|
T Consensus 121 pv 122 (329)
T PF15632_consen 121 PV 122 (329)
T ss_pred CC
Confidence 54
No 478
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.57 E-value=64 Score=21.59 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHCCCeE
Q 028948 130 ETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v 146 (201)
++..++++..++.|++|
T Consensus 53 ~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 53 EDRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHHcCCcC
Confidence 46678999999999865
No 479
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=38.52 E-value=89 Score=32.21 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE----E------------------EecCC
Q 028948 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT----I------------------ELNVG 123 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~eyl~~~k~lGFd~----I------------------EISdG 123 (201)
+++-.++-|+.+|+.||.+. +|.=.+.|.. -++++|++. + +=.+-
T Consensus 529 ~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~-----------ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~V 597 (884)
T TIGR01522 529 PRPGVKEAVTTLITGGVRIIMITGDSQETAVS-----------IARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAV 597 (884)
T ss_pred chhHHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeE
Confidence 45568999999999999665 5754444433 236666641 0 00123
Q ss_pred cccCChhHHHHHHHHHHHCCCeE
Q 028948 124 SLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
+-.+.+++|.++|+..++.|-.|
T Consensus 598 far~~P~~K~~iv~~lq~~g~~v 620 (884)
T TIGR01522 598 FARASPEHKMKIVKALQKRGDVV 620 (884)
T ss_pred EEECCHHHHHHHHHHHHHCCCEE
Confidence 44588999999999999999665
No 480
>PRK06256 biotin synthase; Validated
Probab=38.43 E-value=75 Score=28.34 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhC-CceecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc---------ccCChhHHHHHHHHH
Q 028948 71 FIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS---------LEIPEETLLRYVRLV 139 (201)
Q Consensus 71 ~L~eKI~l~~~~-gV~v~~-GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGt---------i~i~~~~r~~lI~~~ 139 (201)
.+.+.++..+++ ++.++. .+. .-++.++.+++.|++.+-++--| -.-+.+++.+.|+.+
T Consensus 127 ~~~e~i~~i~~~~~i~~~~~~g~----------l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a 196 (336)
T PRK06256 127 QVVEAVKAIKEETDLEICACLGL----------LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMV 196 (336)
T ss_pred HHHHHHHHHHhcCCCcEEecCCc----------CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHH
Confidence 466666666654 443322 111 23577888999999998763211 123568889999999
Q ss_pred HHCCCeEcc
Q 028948 140 KSAGLKAKP 148 (201)
Q Consensus 140 ~~~Gf~v~p 148 (201)
++.|+++.+
T Consensus 197 ~~~Gi~v~~ 205 (336)
T PRK06256 197 KAAGIEPCS 205 (336)
T ss_pred HHcCCeecc
Confidence 999999854
No 481
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=38.41 E-value=36 Score=25.22 Aligned_cols=54 Identities=17% Similarity=0.089 Sum_probs=34.8
Q ss_pred chhHHHHHHHhhcccccEEEeeCccc-cccChhHHHHHHHHHHhCCceecCccHHHHHHHh
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSH-SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN 98 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs-~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~q 98 (201)
++..++++++. .-+|++-+--.-. =+. ..++..++|+.||+.+.++++ |--+..
T Consensus 6 ~~~~~~~li~~--~a~d~~~~~~~~~GGit---~~~~i~~~A~~~gi~~~~h~~-~~~i~~ 60 (111)
T PF13378_consen 6 SLHDFRRLIEA--GAVDIVQIDPTRCGGIT---EALRIAALAEAHGIPVMPHSM-ESGIGL 60 (111)
T ss_dssp SHHHHHHHHHT--TSCSEEEEBHHHHTSHH---HHHHHHHHHHHTT-EEEEBSS-SSHHHH
T ss_pred CHHHHHHHHHc--CCCCEEEeCchhcCCHH---HHHHHHHHHHHhCCCEEecCC-CCcHHH
Confidence 67788888883 3356665431110 022 278899999999999999876 554433
No 482
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=38.26 E-value=82 Score=26.28 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=53.3
Q ss_pred EeeCccccccChhHHHHHHHHHHhCCc--eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHH
Q 028948 58 KFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY 135 (201)
Q Consensus 58 Kfg~GTs~l~p~~~L~eKI~l~~~~gV--~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~l 135 (201)
|--+ ++++..+ |.+ +++++|| -+..|...+.|+.+- . ..+-++||+.+=++|++-+.+.+.....
T Consensus 122 K~~~--saF~~T~-L~~---~Lr~~gi~~lii~Gv~T~~CV~~T--a-----~~A~~~Gy~v~vv~Da~as~~~~~h~~a 188 (203)
T cd01013 122 KWRY--SAFKRSP-LLE---RLKESGRDQLIITGVYAHIGCLST--A-----VDAFMRDIQPFVVADAIADFSLEEHRMA 188 (203)
T ss_pred CCCc--CCcCCCC-HHH---HHHHcCCCEEEEEEeccChhHHHH--H-----HHHHHCCCeEEEeccccCCCCHHHHHHH
Confidence 5443 3444432 444 4688888 333487889888885 3 5577899999999999999999888888
Q ss_pred HHHHHHCC
Q 028948 136 VRLVKSAG 143 (201)
Q Consensus 136 I~~~~~~G 143 (201)
++.++..+
T Consensus 189 l~~l~~~~ 196 (203)
T cd01013 189 LKYAATRC 196 (203)
T ss_pred HHHHHhhe
Confidence 88876653
No 483
>PRK08185 hypothetical protein; Provisional
Probab=38.12 E-value=97 Score=28.05 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=54.9
Q ss_pred EEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHH--
Q 028948 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR-- 134 (201)
Q Consensus 57 lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~-- 134 (201)
|-++-|+...++.+...-..++++++.|+|.. -|-++ .=.+.++.|-+.||+.|=+..-. +|.++-.+
T Consensus 42 l~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~l------HLDHg--~~~e~i~~ai~~Gf~SVM~D~S~--l~~eeNi~~t 111 (283)
T PRK08185 42 IAIHPNELDFLGDNFFAYVRERAKRSPVPFVI------HLDHG--ATIEDVMRAIRCGFTSVMIDGSL--LPYEENVALT 111 (283)
T ss_pred EEeCcchhhhccHHHHHHHHHHHHHCCCCEEE------ECCCC--CCHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHH
Confidence 34444444444545455555677777776653 01122 22355667778999999887554 56666554
Q ss_pred --HHHHHHHCCCeEccccccccC
Q 028948 135 --YVRLVKSAGLKAKPKFAVMFN 155 (201)
Q Consensus 135 --lI~~~~~~Gf~v~pE~g~k~~ 155 (201)
+++.++..|..|--|+|. .+
T Consensus 112 ~~vv~~a~~~gv~vE~ElG~-vg 133 (283)
T PRK08185 112 KEVVELAHKVGVSVEGELGT-IG 133 (283)
T ss_pred HHHHHHHHHcCCeEEEEEee-cc
Confidence 555667889999999987 44
No 484
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=38.10 E-value=1.2e+02 Score=26.38 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=67.3
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC----------C--ceecCccHHHHHHHhCCchHHHH
Q 028948 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----------D--VYVSTGDWAEHLIRNGPSAFKEY 106 (201)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~----------g--V~v~~GtlfE~al~qg~~~~~ey 106 (201)
....++.+|+...+ |+-.||.++..++++++-.+.+-+. | ..+.+.||-| +.- ...++
T Consensus 85 s~e~~~~~l~~Ga~-----~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~---~~~--~~~~~ 154 (243)
T TIGR01919 85 DDSSLRAALTGGRA-----RVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSD---GGG--DLEVL 154 (243)
T ss_pred CHHHHHHHHHcCCC-----EEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeec---CCC--cHHHH
Confidence 55556667886555 5577999999999898877665221 1 1333456755 333 78999
Q ss_pred HHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHHCCCeEccccccc
Q 028948 107 VEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (201)
Q Consensus 107 l~~~k~lGFd~IEIS----dGti~i~~~~r~~lI~~~~~~Gf~v~pE~g~k 153 (201)
++++.++|+..|=+. ||+..=|+-+..+-++... ...+..-=|+.
T Consensus 155 ~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~ 203 (243)
T TIGR01919 155 ERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSS 203 (243)
T ss_pred HHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcC
Confidence 999999999988764 6887777766554444332 34554444444
No 485
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=38.08 E-value=1.1e+02 Score=24.61 Aligned_cols=80 Identities=15% Similarity=0.063 Sum_probs=56.5
Q ss_pred hcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC
Q 028948 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (201)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i 127 (201)
.+++| +-|-.+ |+++..+ |.+ +++++|| .+. .|.-.++|+.+- . ..+.++||+++=++|.+-+.
T Consensus 87 ~~~~v-~~K~~~--saF~~t~-L~~---~L~~~gi~~vvi~G~~t~~CV~~T--a-----~~A~~~Gy~v~vv~Da~a~~ 152 (179)
T cd01015 87 EDEMV-LVKKYA--SAFFGTS-LAA---TLTARGVDTLIVAGCSTSGCIRAT--A-----VDAMQHGFRPIVVRECVGDR 152 (179)
T ss_pred CCCEE-EecCcc--CCccCCc-HHH---HHHHcCCCEEEEeeecccHhHHHH--H-----HHHHHCCCeEEEeeccccCC
Confidence 34443 456553 3444432 444 4578998 444 477888888774 3 45679999999999999999
Q ss_pred ChhHHHHHHHHHHHCC
Q 028948 128 PEETLLRYVRLVKSAG 143 (201)
Q Consensus 128 ~~~~r~~lI~~~~~~G 143 (201)
+++.....+..++..+
T Consensus 153 ~~~~h~~al~~l~~~~ 168 (179)
T cd01015 153 APAPHEANLFDIDNKY 168 (179)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999888888887653
No 486
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=37.90 E-value=2.1e+02 Score=25.95 Aligned_cols=72 Identities=11% Similarity=0.166 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHhCC---ceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 028948 69 KPFIEEVVKRAHQHD---VYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (201)
Q Consensus 69 ~~~L~eKI~l~~~~g---V~v~~G-tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (201)
+..+++--+.++++| +.+.+| +..+ .+ ..++..+.+++.|++.+++++..-.=+.+.-.++++.+++.+.
T Consensus 8 ~g~l~~l~~~l~~~~~~~~lvv~~~~~~~----~~--~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 81 (370)
T cd08551 8 AGAIEKLGEEIKNLGGRKALIVTDPGLVK----TG--VLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGC 81 (370)
T ss_pred cCHHHHHHHHHHHcCCCeEEEEeCcchhh----Cc--cHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCC
Confidence 344566666666655 344445 3322 23 5566666667778887777776666777777788888887776
Q ss_pred eE
Q 028948 145 KA 146 (201)
Q Consensus 145 ~v 146 (201)
.+
T Consensus 82 d~ 83 (370)
T cd08551 82 DG 83 (370)
T ss_pred CE
Confidence 65
No 487
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=37.71 E-value=96 Score=32.51 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=21.1
Q ss_pred CcccCChhHHHHHHHHHHHCCCeE
Q 028948 123 GSLEIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~Gf~v 146 (201)
-+-.+++++|.++|+..++.|-.|
T Consensus 663 VfaR~sPeqK~~IV~~lq~~g~vv 686 (997)
T TIGR01106 663 VFARTSPQQKLIIVEGCQRQGAIV 686 (997)
T ss_pred EEEECCHHHHHHHHHHHHHCCCEE
Confidence 456789999999999999999877
No 488
>PRK06801 hypothetical protein; Provisional
Probab=37.68 E-value=92 Score=28.15 Aligned_cols=105 Identities=14% Similarity=0.216 Sum_probs=61.0
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC----cc--------HHHHHH------------H
Q 028948 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GD--------WAEHLI------------R 97 (201)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~----Gt--------lfE~al------------~ 97 (201)
.++++|..|-+ =+++-|.+-+++-+.++..|+-+.+.+.++.. |+ +...+. .
T Consensus 5 ~~~~~l~~A~~----~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lH 80 (286)
T PRK06801 5 SLANGLAHARK----HGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLN 80 (286)
T ss_pred cHHHHHHHHHH----CCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 44555554432 14455666666666666666666666554321 11 111110 0
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHCCCeEcccccc
Q 028948 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAV 152 (201)
Q Consensus 98 qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~----~lI~~~~~~Gf~v~pE~g~ 152 (201)
-+....-+.+++|-+.||+.|=+ ||+- +|.++-. ++.+.++..|.-|--|+|.
T Consensus 81 lDH~~~~e~i~~Ai~~GftSVm~-D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~ 137 (286)
T PRK06801 81 LDHGLHFEAVVRALRLGFSSVMF-DGST-LEYEENVRQTREVVKMCHAVGVSVEAELGA 137 (286)
T ss_pred CCCCCCHHHHHHHHHhCCcEEEE-cCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCc
Confidence 01123457788889999999999 4443 4544443 4667788899988888886
No 489
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=37.67 E-value=1.8e+02 Score=26.35 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc
Q 028948 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~pE~ 150 (201)
++.++|+ +.|++++=.-++-..+|..+|.++....+. .+.+....
T Consensus 90 ~l~~~L~---~~G~~V~lTR~~D~~vsL~~R~~~An~~~A-DlFISIH~ 134 (287)
T PRK10319 90 NVRSILR---NHGIDARLTRSGDTFIPLYDRVEIAHKHGA-DLFMSIHA 134 (287)
T ss_pred HHHHHHH---HCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-CEEEEecC
Confidence 4455554 449999999999999999999888887543 36665443
No 490
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=37.62 E-value=1.8e+02 Score=24.87 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHHhC-CceecC-ccHH-------HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-CC-hh------
Q 028948 68 PKPFIEEVVKRAHQH-DVYVST-GDWA-------EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-IP-EE------ 130 (201)
Q Consensus 68 p~~~L~eKI~l~~~~-gV~v~~-Gtlf-------E~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~-i~-~~------ 130 (201)
+++.+++..+++.++ ++.++. +++. +....+.-+.+++.++.|+.||.+.|=+--|... .+ ++
T Consensus 43 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~ 122 (279)
T cd00019 43 KKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVI 122 (279)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHH
Confidence 446788899999998 665543 3221 1111111126888999999999999888666543 12 22
Q ss_pred -HHHHHHHHHHHCCCeEccc
Q 028948 131 -TLLRYVRLVKSAGLKAKPK 149 (201)
Q Consensus 131 -~r~~lI~~~~~~Gf~v~pE 149 (201)
...++.+.+++.|.++.-|
T Consensus 123 ~~l~~l~~~a~~~gi~l~lE 142 (279)
T cd00019 123 EALNELIDKAETKGVVIALE 142 (279)
T ss_pred HHHHHHHHhccCCCCEEEEe
Confidence 2234455555778887544
No 491
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=37.59 E-value=81 Score=27.53 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHH
Q 028948 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKS 141 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEISdG---ti~i~~~~r~~lI~~~~~ 141 (201)
.++++++++-+-|.+.+=+.-. +..|+.++|.++++.+.+
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~ 65 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVE 65 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHH
Confidence 4555555555666666555432 345666666666665544
No 492
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=37.56 E-value=2.2e+02 Score=23.36 Aligned_cols=89 Identities=13% Similarity=0.098 Sum_probs=57.4
Q ss_pred hcccccEEEeeCccc---cccChhHHHHHHHHHHhCCceecCcc--HH-----HHHHHhCCchHHHHHHHHHHcCCC---
Q 028948 50 MGQFVDGLKFSGGSH---SLMPKPFIEEVVKRAHQHDVYVSTGD--WA-----EHLIRNGPSAFKEYVEDCKQVGFD--- 116 (201)
Q Consensus 50 ag~yID~lKfg~GTs---~l~p~~~L~eKI~l~~~~gV~v~~Gt--lf-----E~al~qg~~~~~eyl~~~k~lGFd--- 116 (201)
+|-=.=++|.+-|+. .+-|. ...-++-|+++|+.+ |. |+ +-+.. ..+.|++.++..+.+
T Consensus 21 ~g~~fviiKateG~~g~~~~D~~--~~~~~~~A~~aGl~~--G~YHf~~~~~~~~a~~----qA~~f~~~~~~~~~~~~~ 92 (191)
T cd06414 21 SGVDFAIIRAGYGGYGELQEDKY--FEENIKGAKAAGIPV--GVYFYSYAVTVAEARE----EAEFVLRLIKGYKLSYPV 92 (191)
T ss_pred CCCCEEEEEEecCCCcccccCHH--HHHHHHHHHHCCCce--EEEEEEEeCCHHHHHH----HHHHHHHHhhccCCCCCe
Confidence 343445789999998 66655 999999999999854 42 11 22222 578888988887654
Q ss_pred EEEecCCcc---cCChhHH----HHHHHHHHHCCCeE
Q 028948 117 TIELNVGSL---EIPEETL----LRYVRLVKSAGLKA 146 (201)
Q Consensus 117 ~IEISdGti---~i~~~~r----~~lI~~~~~~Gf~v 146 (201)
++.+-.... .++..+. .++++++++.|.++
T Consensus 93 ~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~~G~~~ 129 (191)
T cd06414 93 YYDLEDETQLGAGLSKDQRTDIANAFCETIEAAGYYP 129 (191)
T ss_pred EEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCe
Confidence 344433221 1343333 56688888888877
No 493
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=37.54 E-value=68 Score=28.99 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=56.7
Q ss_pred ccccChhHHHHHHHHHHhCCceecC-------c--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHH
Q 028948 64 HSLMPKPFIEEVVKRAHQHDVYVST-------G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134 (201)
Q Consensus 64 s~l~p~~~L~eKI~l~~~~gV~v~~-------G--tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~ 134 (201)
.++|+++ .++-.++....+....+ . ...|.|=. +.+.+|...+-+-|+|+|=+|.|-+. +++-+.+
T Consensus 29 v~v~D~~-~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~---~Av~e~~~~~L~~g~d~iV~SVGALa-d~~l~er 103 (255)
T COG1712 29 VAVYDRD-EEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP---EAVREYVPKILKAGIDVIVMSVGALA-DEGLRER 103 (255)
T ss_pred EEEecCC-HHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH---HHHHHHhHHHHhcCCCEEEEechhcc-ChHHHHH
Confidence 3577764 34444455555553332 1 23444433 38999999999999999999999999 8899999
Q ss_pred HHHHHHHCCCeE
Q 028948 135 YVRLVKSAGLKA 146 (201)
Q Consensus 135 lI~~~~~~Gf~v 146 (201)
+-+.++..|=++
T Consensus 104 l~~lak~~~~rv 115 (255)
T COG1712 104 LRELAKCGGARV 115 (255)
T ss_pred HHHHHhcCCcEE
Confidence 999999988877
No 494
>PTZ00413 lipoate synthase; Provisional
Probab=37.48 E-value=34 Score=32.71 Aligned_cols=59 Identities=10% Similarity=0.153 Sum_probs=33.2
Q ss_pred CceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC------Ccc----cCChhHHHHHHHHHHHCCCeE
Q 028948 83 DVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV------GSL----EIPEETLLRYVRLVKSAGLKA 146 (201)
Q Consensus 83 gV~v~~G---tlfE~al~qg~~~~~eyl~~~k~lGFd~IEISd------Gti----~i~~~~r~~lI~~~~~~Gf~v 146 (201)
||.+++| |+-|.- +.+-+-++.++++|.|.+=|.+ --+ =+++++..++=+.+.+.||+.
T Consensus 294 gi~tcSGiIVGLGET~-----eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~ 365 (398)
T PTZ00413 294 AMLTKSSIMLGLGETE-----EEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLY 365 (398)
T ss_pred CceEeeeeEecCCCCH-----HHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCce
Confidence 6666654 344421 1345566666777777766633 111 245666666666677777753
No 495
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=37.29 E-value=91 Score=28.38 Aligned_cols=63 Identities=13% Similarity=0.229 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHcCCCEEEec------CCcc-------cCChhHHHHHHHHHHHCCCeEcccccccc-CCCCcccccc
Q 028948 102 AFKEYVEDCKQVGFDTIELN------VGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMF-NKSDIPSDRD 164 (201)
Q Consensus 102 ~~~eyl~~~k~lGFd~IEIS------dGti-------~i~~~~r~~lI~~~~~~Gf~v~pE~g~k~-~~~dl~ag~~ 164 (201)
.++.|++.+|++||..|-=- ||.. .|.-+.=.++|++|++.||...|=+--.. ...=.+||+|
T Consensus 96 ~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaD 172 (268)
T PF09370_consen 96 DMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGAD 172 (268)
T ss_dssp -HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-S
T ss_pred cHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCC
Confidence 58899999999999887522 2221 34555667899999999998765332111 1122456666
No 496
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=37.19 E-value=1.3e+02 Score=27.26 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=50.8
Q ss_pred ccChhHHHHHHHHHHhCCceecC-----ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHH
Q 028948 66 LMPKPFIEEVVKRAHQHDVYVST-----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYV 136 (201)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~-----GtlfE~al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r----~~lI 136 (201)
..+...|+|.++.+++-||.|.. ++|-..-+.+ ..++.+..++++|...|-| ||++=..... .+++
T Consensus 69 ~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~---~~~~~f~~~~~~Gv~GvKi--dF~~~d~Q~~v~~y~~i~ 143 (273)
T PF10566_consen 69 PIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEK---QLDEAFKLYAKWGVKGVKI--DFMDRDDQEMVNWYEDIL 143 (273)
T ss_dssp B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHC---CHHHHHHHHHHCTEEEEEE--E--SSTSHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHH---HHHHHHHHHHHcCCCEEee--CcCCCCCHHHHHHHHHHH
Confidence 45677899999999999975543 2233333444 3599999999999999987 3444443333 4678
Q ss_pred HHHHHCCCeE
Q 028948 137 RLVKSAGLKA 146 (201)
Q Consensus 137 ~~~~~~Gf~v 146 (201)
+.|+++.|-|
T Consensus 144 ~~AA~~~Lmv 153 (273)
T PF10566_consen 144 EDAAEYKLMV 153 (273)
T ss_dssp HHHHHTT-EE
T ss_pred HHHHHcCcEE
Confidence 8999999988
No 497
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=37.14 E-value=2.4e+02 Score=25.10 Aligned_cols=119 Identities=8% Similarity=-0.084 Sum_probs=58.8
Q ss_pred CCceeEecCCCCCC--cchhHHHHHHHhhc-c--cccEEEeeCccccccChhHHHHHHHHHHh---CCceecCccHHHH-
Q 028948 24 FGVTEMRSPHYTLS--SSHNVLEDIFESMG-Q--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQ---HDVYVSTGDWAEH- 94 (201)
Q Consensus 24 ~GlTmV~DkG~s~~--~g~~~l~DlLe~ag-~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~---~gV~v~~GtlfE~- 94 (201)
-| |.++|...+.- +....+.+.+..+. . ++|+.=|+ +..+.+...+++.-++... .|++++|+.+.-.
T Consensus 29 gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~el~~~~~~~G~~g~Klf~~~~~~~~ 105 (335)
T cd01294 29 GF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLM--TLYLTENTTPEELREAKKKGGIRGVKLYPAGATTNS 105 (335)
T ss_pred CC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEE--EEeccCCCCHHHHHHHHHhCCceEEEEecCCCccCC
Confidence 48 99998653211 12233444443332 2 57775333 2222333224333333333 3478886421000
Q ss_pred -HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh-------hHHHHHHHHHHHC-CCeE
Q 028948 95 -LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE-------ETLLRYVRLVKSA-GLKA 146 (201)
Q Consensus 95 -al~qg~~~~~eyl~~~k~lGFd~IEISdGti~i~~-------~~r~~lI~~~~~~-Gf~v 146 (201)
...++...+.+.++.|+++|...+ |-.+.-.++. +.-.+++..+++. |.++
T Consensus 106 ~~~~~d~~~l~~~~e~~~~~g~~V~-vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~p~~~v 165 (335)
T cd01294 106 QGGVTDLEKIYPVLEAMQKLGMPLL-VHGEVPDFKIDVLDREAKFIPVLEPLAQRFPKLKI 165 (335)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCeEE-EecCCCcccccchhhHHHHHHHHHHHHHHcCCCeE
Confidence 000111368888999999997754 4444433322 1224577777764 7776
No 498
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=37.11 E-value=99 Score=27.45 Aligned_cols=64 Identities=11% Similarity=0.207 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCC--ce--ecCccH------HHHHHHhC---CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHH
Q 028948 71 FIEEVVKRAHQHD--VY--VSTGDW------AEHLIRNG---PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY 135 (201)
Q Consensus 71 ~L~eKI~l~~~~g--V~--v~~Gtl------fE~al~qg---~~~~~eyl~~~k~lGFd~IEISdGti~i~~~~r~~l 135 (201)
.+.+.++.+|+++ ++ ++.||| |..++... ..-++.-++.+++.|||.|+|.=-... +.+++..+
T Consensus 52 ~~~~~~~~~k~~~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~-~~~d~~n~ 128 (299)
T cd02879 52 EFSTFTETVKRKNPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPS-SQVEMENF 128 (299)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCC-ChhHHHHH
Confidence 3555555665544 44 444665 33333211 014678888999999999999732211 23455443
No 499
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=37.11 E-value=35 Score=31.10 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=37.0
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhc-c--cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHH
Q 028948 25 GVTEMRSPHYTLSSSHNVLEDIFESMG-Q--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWA 92 (201)
Q Consensus 25 GlTmV~DkG~s~~~g~~~l~DlLe~ag-~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gtlf 92 (201)
.+-+..|=- +. +++.++.+++.-+ + -+|..|+|+ +++ -++..++|++|||.++++++.
T Consensus 214 ~~pia~gE~--~~-~~~~~~~~i~~~a~di~~~d~~~~GG----it~---~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 214 ATPLAVGEV--FN-SIWDWQNLIQERLIDYIRTTVSHAGG----ITP---ARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred CCCEEeccC--Cc-CHHHHHHHHHhCCCCEEecCccccCC----HHH---HHHHHHHHHHcCCeeeccCCC
Confidence 444444443 34 7788888887522 1 234445554 332 678899999999999987543
No 500
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=37.04 E-value=86 Score=23.04 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHhCCc-eecCc-c-HHHHHHHhC
Q 028948 68 PKPFIEEVVKRAHQHDV-YVSTG-D-WAEHLIRNG 99 (201)
Q Consensus 68 p~~~L~eKI~l~~~~gV-~v~~G-t-lfE~al~qg 99 (201)
+++.|++-|.=+-+-|= ..-|| | +||..|.+-
T Consensus 17 s~eel~~~I~daIqsgEEk~LPGLGVlFE~~W~~~ 51 (68)
T PRK02955 17 SKEELEGTIVDAIQSGEEKMLPGLGVLFEVIWKNA 51 (68)
T ss_pred CHHHHHHHHHHHHhccchhcCCcchhHHHHHHHhc
Confidence 35678999988888776 56678 7 999999874
Done!