Query 028952
Match_columns 201
No_of_seqs 130 out of 1399
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.9 7.3E-26 1.6E-30 195.1 19.1 197 2-199 10-211 (358)
2 PRK11272 putative DMT superfam 99.9 4.5E-20 9.7E-25 155.1 18.1 162 7-200 10-173 (292)
3 TIGR00688 rarD rarD protein. T 99.8 4E-20 8.6E-25 152.4 15.7 162 5-199 2-168 (256)
4 PRK11689 aromatic amino acid e 99.8 5.7E-20 1.2E-24 154.7 16.3 172 3-199 2-178 (295)
5 PRK11453 O-acetylserine/cystei 99.8 2.1E-19 4.6E-24 151.4 17.9 160 5-199 4-165 (299)
6 PRK15430 putative chlorampheni 99.8 9.1E-20 2E-24 153.5 14.1 164 2-199 5-171 (296)
7 TIGR00950 2A78 Carboxylate/Ami 99.8 9.6E-19 2.1E-23 143.8 15.7 150 17-200 1-151 (260)
8 PRK10532 threonine and homoser 99.8 7.1E-17 1.5E-21 135.8 18.2 161 3-199 10-170 (293)
9 TIGR00817 tpt Tpt phosphate/ph 99.7 3.3E-16 7E-21 132.1 19.3 151 20-199 17-167 (302)
10 PTZ00343 triose or hexose phos 99.7 4.4E-15 9.6E-20 128.0 19.2 152 18-199 62-216 (350)
11 TIGR03340 phn_DUF6 phosphonate 99.7 4E-15 8.8E-20 124.3 16.6 164 6-199 2-166 (281)
12 COG2510 Predicted membrane pro 99.6 1.5E-14 3.3E-19 105.4 12.6 136 5-148 3-138 (140)
13 PF00892 EamA: EamA-like trans 99.6 3.3E-15 7.1E-20 108.8 8.6 124 15-148 1-125 (126)
14 COG0697 RhaT Permeases of the 99.6 9.2E-14 2E-18 114.8 17.7 170 3-199 5-176 (292)
15 PF06027 DUF914: Eukaryotic pr 99.6 1.9E-13 4.2E-18 116.6 19.3 167 15-199 23-190 (334)
16 TIGR00950 2A78 Carboxylate/Ami 99.5 2E-12 4.4E-17 106.1 15.4 130 4-144 127-259 (260)
17 TIGR00776 RhaT RhaT L-rhamnose 99.5 2.7E-12 5.9E-17 108.0 16.2 169 6-200 2-175 (290)
18 PRK10532 threonine and homoser 99.3 6.9E-11 1.5E-15 99.4 14.9 132 5-148 148-280 (293)
19 PRK11272 putative DMT superfam 99.3 8.6E-11 1.9E-15 98.8 13.4 134 5-148 150-284 (292)
20 COG2962 RarD Predicted permeas 99.2 3.1E-10 6.7E-15 93.8 14.7 164 4-200 6-171 (293)
21 PF13536 EmrE: Multidrug resis 99.2 1.4E-11 3E-16 89.6 6.1 104 39-150 2-107 (113)
22 COG5006 rhtA Threonine/homoser 99.2 8.7E-10 1.9E-14 89.4 16.3 158 6-199 13-170 (292)
23 KOG2765 Predicted membrane pro 99.2 1.1E-10 2.5E-15 99.1 10.6 105 76-198 164-268 (416)
24 PRK11689 aromatic amino acid e 99.2 5E-10 1.1E-14 94.3 14.0 131 5-148 156-286 (295)
25 PLN00411 nodulin MtN21 family 99.2 7.6E-10 1.6E-14 95.8 15.1 135 6-149 190-328 (358)
26 KOG4510 Permease of the drug/m 99.1 2.7E-11 5.9E-16 98.9 3.4 174 7-199 40-213 (346)
27 PRK11453 O-acetylserine/cystei 99.1 3.6E-09 7.8E-14 89.2 14.7 137 5-149 143-287 (299)
28 TIGR03340 phn_DUF6 phosphonate 99.1 2.1E-09 4.5E-14 89.8 11.8 132 5-146 144-280 (281)
29 TIGR00817 tpt Tpt phosphate/ph 99.0 1.6E-09 3.6E-14 91.3 10.5 137 5-148 145-292 (302)
30 PF03151 TPT: Triose-phosphate 98.9 7.8E-08 1.7E-12 72.8 13.5 133 7-146 2-150 (153)
31 PF08449 UAA: UAA transporter 98.9 2.9E-07 6.2E-12 77.8 17.2 157 22-199 17-176 (303)
32 PRK15430 putative chlorampheni 98.8 1.1E-07 2.3E-12 80.2 12.6 132 8-148 152-284 (296)
33 PTZ00343 triose or hexose phos 98.8 2.2E-07 4.7E-12 80.3 14.6 137 5-148 194-347 (350)
34 TIGR00776 RhaT RhaT L-rhamnose 98.8 1.2E-07 2.5E-12 79.9 11.8 129 4-148 151-287 (290)
35 COG0697 RhaT Permeases of the 98.7 5.5E-07 1.2E-11 74.2 14.5 132 4-148 153-286 (292)
36 PF06027 DUF914: Eukaryotic pr 98.5 3.1E-06 6.8E-11 72.5 14.0 140 3-151 166-307 (334)
37 COG5006 rhtA Threonine/homoser 98.5 2.3E-06 5.1E-11 69.8 11.7 129 6-145 149-278 (292)
38 PF04142 Nuc_sug_transp: Nucle 98.5 2.7E-06 5.9E-11 70.0 12.4 125 66-199 12-136 (244)
39 PRK15051 4-amino-4-deoxy-L-ara 98.4 2.7E-06 5.9E-11 61.7 9.6 67 76-148 41-108 (111)
40 PRK02971 4-amino-4-deoxy-L-ara 98.3 2.4E-05 5.2E-10 58.2 11.3 116 6-148 3-121 (129)
41 KOG2234 Predicted UDP-galactos 98.2 0.00037 8E-09 59.5 18.5 178 6-199 16-205 (345)
42 KOG4314 Predicted carbohydrate 98.0 1.4E-05 3E-10 63.2 6.0 94 82-199 64-157 (290)
43 KOG1441 Glucose-6-phosphate/ph 97.9 3.2E-05 6.8E-10 65.8 7.4 152 21-200 33-186 (316)
44 KOG2766 Predicted membrane pro 97.9 3.6E-07 7.9E-12 74.6 -4.9 155 12-192 26-181 (336)
45 PF06800 Sugar_transport: Suga 97.9 0.00048 1E-08 57.3 12.9 117 68-198 42-159 (269)
46 TIGR00688 rarD rarD protein. T 97.8 0.00046 9.9E-09 56.7 12.2 102 9-118 150-255 (256)
47 PF06800 Sugar_transport: Suga 97.7 0.00055 1.2E-08 57.0 11.1 132 3-145 136-267 (269)
48 PF08449 UAA: UAA transporter 97.7 0.001 2.2E-08 56.2 12.7 136 6-148 155-296 (303)
49 PRK13499 rhamnose-proton sympo 97.5 0.0021 4.6E-08 55.4 11.7 177 3-193 5-190 (345)
50 COG2962 RarD Predicted permeas 97.3 0.011 2.4E-07 49.5 13.0 128 11-148 154-282 (293)
51 KOG1443 Predicted integral mem 97.2 0.011 2.4E-07 49.9 12.8 129 34-189 45-176 (349)
52 KOG1444 Nucleotide-sugar trans 97.2 0.052 1.1E-06 46.0 16.7 151 19-198 26-178 (314)
53 KOG2765 Predicted membrane pro 97.2 0.0062 1.3E-07 52.6 11.0 142 3-151 245-392 (416)
54 KOG1441 Glucose-6-phosphate/ph 97.0 0.0023 5E-08 54.6 7.3 137 4-148 162-306 (316)
55 PRK13499 rhamnose-proton sympo 97.0 0.027 5.8E-07 48.7 13.8 145 4-149 173-341 (345)
56 KOG3912 Predicted integral mem 97.0 0.014 3E-07 48.8 11.2 161 18-199 16-198 (372)
57 PF10639 UPF0546: Uncharacteri 97.0 0.0024 5.1E-08 46.4 5.9 108 11-146 2-111 (113)
58 KOG4510 Permease of the drug/m 96.7 0.0012 2.5E-08 54.8 2.4 133 6-148 192-324 (346)
59 PF04657 DUF606: Protein of un 96.5 0.084 1.8E-06 39.6 11.6 132 7-146 3-138 (138)
60 PRK10452 multidrug efflux syst 96.4 0.012 2.7E-07 43.1 6.2 67 77-149 35-103 (120)
61 PRK10650 multidrug efflux syst 96.4 0.097 2.1E-06 37.7 10.6 60 82-147 46-106 (109)
62 PF05653 Mg_trans_NIPA: Magnes 96.2 0.014 3.1E-07 49.4 6.4 71 73-149 51-122 (300)
63 PRK09541 emrE multidrug efflux 96.2 0.018 3.9E-07 41.6 5.9 65 78-148 36-102 (110)
64 PRK11431 multidrug efflux syst 96.0 0.03 6.6E-07 40.1 6.3 64 79-148 36-101 (105)
65 COG4975 GlcU Putative glucose 95.9 0.00098 2.1E-08 54.5 -1.7 169 6-197 3-172 (288)
66 COG2076 EmrE Membrane transpor 95.9 0.029 6.3E-07 40.2 5.8 61 82-148 41-102 (106)
67 KOG1442 GDP-fucose transporter 95.8 0.039 8.4E-07 46.1 6.8 145 33-201 60-209 (347)
68 KOG1580 UDP-galactose transpor 95.7 0.045 9.8E-07 44.8 6.8 98 82-198 96-193 (337)
69 PF00893 Multi_Drug_Res: Small 95.6 0.037 8E-07 38.6 5.3 52 82-139 40-92 (93)
70 COG3238 Uncharacterized protei 95.2 0.52 1.1E-05 35.9 10.7 143 1-147 1-144 (150)
71 KOG1444 Nucleotide-sugar trans 94.6 0.49 1.1E-05 40.2 10.2 137 5-148 157-299 (314)
72 KOG1581 UDP-galactose transpor 93.8 0.46 9.9E-06 40.3 8.4 133 5-146 172-310 (327)
73 KOG1583 UDP-N-acetylglucosamin 93.6 0.61 1.3E-05 39.1 8.7 124 64-198 60-185 (330)
74 KOG1580 UDP-galactose transpor 93.4 0.25 5.5E-06 40.5 6.1 72 69-146 239-310 (337)
75 TIGR00803 nst UDP-galactose tr 93.3 0.51 1.1E-05 37.8 7.9 59 81-145 162-220 (222)
76 COG4975 GlcU Putative glucose 93.2 0.0097 2.1E-07 48.8 -2.3 131 8-149 155-285 (288)
77 KOG2922 Uncharacterized conser 93.1 0.095 2.1E-06 44.6 3.3 70 73-148 65-135 (335)
78 KOG1581 UDP-galactose transpor 92.3 5.7 0.00012 33.8 12.7 142 33-198 50-193 (327)
79 KOG1443 Predicted integral mem 91.2 6.3 0.00014 33.7 11.9 135 6-147 165-313 (349)
80 PF07857 DUF1632: CEO family ( 90.0 2.4 5.1E-05 35.2 8.3 176 7-194 2-200 (254)
81 KOG3912 Predicted integral mem 87.7 12 0.00027 31.7 10.9 136 5-147 176-332 (372)
82 COG5070 VRG4 Nucleotide-sugar 87.4 3.6 7.7E-05 33.7 7.4 124 18-148 168-295 (309)
83 PF06379 RhaT: L-rhamnose-prot 86.8 13 0.00028 32.2 10.9 176 5-194 7-190 (344)
84 KOG4831 Unnamed protein [Funct 73.6 4.1 8.8E-05 29.2 2.9 117 8-147 6-123 (125)
85 KOG2766 Predicted membrane pro 72.3 8.8 0.00019 32.1 5.0 134 3-148 164-298 (336)
86 KOG1582 UDP-galactose transpor 71.5 27 0.00058 29.6 7.7 113 32-151 218-334 (367)
87 PF04142 Nuc_sug_transp: Nucle 68.9 63 0.0014 26.4 11.1 114 5-123 114-233 (244)
88 PF02694 UPF0060: Uncharacteri 66.4 8.1 0.00018 27.7 3.2 36 108-149 68-103 (107)
89 COG1742 Uncharacterized conser 65.9 25 0.00054 25.1 5.5 22 129-150 84-105 (109)
90 PF05653 Mg_trans_NIPA: Magnes 65.8 28 0.00061 29.5 7.0 70 82-151 224-294 (300)
91 PRK02237 hypothetical protein; 60.5 12 0.00026 26.9 3.1 34 110-149 72-105 (109)
92 TIGR00803 nst UDP-galactose tr 56.0 51 0.0011 26.1 6.6 93 101-199 8-107 (222)
93 PF04550 Phage_holin_2: Phage 53.3 44 0.00096 23.0 4.9 32 117-148 24-55 (89)
94 PF10754 DUF2569: Protein of u 48.9 1.1E+02 0.0024 22.9 7.1 30 171-200 115-144 (149)
95 COG3086 RseC Positive regulato 46.0 29 0.00063 26.3 3.3 29 90-118 67-95 (150)
96 KOG1442 GDP-fucose transporter 45.2 44 0.00096 28.4 4.6 135 5-146 185-324 (347)
97 COG5070 VRG4 Nucleotide-sugar 41.7 1.3E+02 0.0027 25.0 6.6 94 86-198 83-176 (309)
98 PF05297 Herpes_LMP1: Herpesvi 37.0 11 0.00025 31.8 0.0 14 172-185 102-115 (381)
99 COG3296 Uncharacterized protei 34.7 1.6E+02 0.0035 21.9 5.6 30 119-148 59-88 (143)
100 PRK10862 SoxR reducing system 32.4 51 0.0011 25.1 2.9 29 91-119 68-96 (154)
101 PF04246 RseC_MucC: Positive r 30.4 66 0.0014 23.5 3.2 28 92-119 62-89 (135)
102 PF11139 DUF2910: Protein of u 27.3 3.1E+02 0.0068 21.6 11.2 64 85-148 129-210 (214)
103 PF07960 CBP4: CBP4; InterPro 26.9 16 0.00034 27.1 -0.7 28 121-149 1-28 (128)
104 KOG1583 UDP-N-acetylglucosamin 26.5 92 0.002 26.5 3.6 132 6-148 165-313 (330)
105 PF07123 PsbW: Photosystem II 24.3 1.1E+02 0.0025 22.8 3.4 27 173-199 102-128 (138)
106 PF07168 Ureide_permease: Urei 23.8 2.1E+02 0.0045 24.7 5.3 92 10-103 1-104 (336)
107 PF09948 DUF2182: Predicted me 23.1 1.4E+02 0.0031 23.6 4.0 39 107-146 152-190 (191)
108 PF11118 DUF2627: Protein of u 22.4 2.5E+02 0.0055 18.8 6.2 48 1-48 1-49 (77)
109 KOG3817 Uncharacterized conser 22.3 4.1E+02 0.0088 23.5 6.8 85 16-106 200-286 (452)
110 PF11168 DUF2955: Protein of u 22.1 2.4E+02 0.0052 20.9 5.0 25 174-198 69-93 (140)
111 PF07301 DUF1453: Protein of u 21.1 3.8E+02 0.0082 20.4 6.3 50 2-55 90-139 (148)
112 PRK11103 PTS system mannose-sp 20.6 1.5E+02 0.0032 25.1 3.9 23 102-124 238-260 (282)
113 PF10951 DUF2776: Protein of u 20.5 64 0.0014 27.5 1.6 48 126-192 223-270 (347)
114 TIGR00828 EIID-AGA PTS system, 20.3 1.5E+02 0.0031 24.9 3.7 23 102-124 228-250 (271)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.94 E-value=7.3e-26 Score=195.08 Aligned_cols=197 Identities=43% Similarity=0.663 Sum_probs=156.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 028952 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (201)
Q Consensus 2 ~~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 81 (201)
++.++|+.|+..+++++...++.|.+++.|++|..+.++|+.+|+++ ++|+.+.++|++++++.+++++..+.+.|+++
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~-Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLL-LLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHH-HHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999 99988765543332445688889999999988
Q ss_pred HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCC
Q 028952 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 161 (201)
.+++.+++.|++|++|++++++.++.|+++.+++++++.|+++.+.+.+++|++|++++++|+.++...+++.....+.+
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~ 168 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP 168 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence 66778999999999999999999999999999999996555555555889999999999999998765444321000000
Q ss_pred --ccc--cC-CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 162 --SNL--HN-ELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 162 --~~~--~~-~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
.|. .. +......+...|++++++|++|||+|.++|||+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~ 211 (358)
T PLN00411 169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHI 211 (358)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 011122345679999999999999999999985
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.85 E-value=4.5e-20 Score=155.07 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 028952 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQ 85 (201)
Q Consensus 7 ~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~~ 85 (201)
.+.++...++||.+++++|...+ ++||.+++++|+.+++++ ++++... ++++ ..+++++......|.++ ..++
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~-ll~~~~~--~~~~--~~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGIL-LLAFLLL--RGHP--LPTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHH-HHHHHHH--hCCC--CCcHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999887 599999999999999998 8887654 2222 23567778888889888 7888
Q ss_pred HHHHHhh-cccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccc
Q 028952 86 TCLYVGI-GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL 164 (201)
Q Consensus 86 ~~~~~gl-~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 164 (201)
.+++.+. +++++++++++.++.|+++.+++.+ +||| +++++++|++++++|++++... +.
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~------~~~~~~~~~~la~~Gv~ll~~~-~~----------- 144 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIR------TRKLEWLGIAIGLAGIVLLNSG-GN----------- 144 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hccc------CchhHHHHHHHHHHhHHHHhcC-cc-----------
Confidence 8999999 9999999999999999999999975 6999 6788889999999999887421 11
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028952 165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDLN 200 (201)
Q Consensus 165 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~~ 200 (201)
. .....|+++.+++++|||.|.+.+||..
T Consensus 145 ------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~ 173 (292)
T PRK11272 145 ------L-SGNPWGAILILIASASWAFGSVWSSRLP 173 (292)
T ss_pred ------c-ccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 1235799999999999999999999863
No 3
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.85 E-value=4e-20 Score=152.39 Aligned_cols=162 Identities=12% Similarity=0.025 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCHH-HHHHHHHHHH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVS-IICKIFGLGL 79 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~----~~~~~~~~-~~~~~~~~gl 79 (201)
|+++++++++++||.+.+++|. .++ +||.++.++|+++++++ +.++...+++++ +.++.+++ .+......|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPF-MLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 6889999999999999999998 454 99999999999999988 777654422211 10112222 2344566666
Q ss_pred HHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccC
Q 028952 80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS 159 (201)
Q Consensus 80 ~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~ 159 (201)
+...++.++++|++++++++++++.++.|+++.+++++++||| +++++++|++++++|+.++...+
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek------~~~~~~l~~~~~~~Gv~li~~~~-------- 144 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKER------ISRFQFIAVIIATLGVISNIVLK-------- 144 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHc--------
Confidence 6688999999999999999999999999999999999999999 67778899999999998764211
Q ss_pred CCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 160 SSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
++ .. .+.+++++||+.|.+.+|+.
T Consensus 145 -----------~~-~~----~~~l~aa~~~a~~~i~~~~~ 168 (256)
T TIGR00688 145 -----------GS-LP----WEALVLAFSFTAYGLIRKAL 168 (256)
T ss_pred -----------CC-ch----HHHHHHHHHHHHHHHHHhhc
Confidence 11 11 35788999999999999986
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.84 E-value=5.7e-20 Score=154.69 Aligned_cols=172 Identities=15% Similarity=0.091 Sum_probs=129.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 028952 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS- 81 (201)
Q Consensus 3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~- 81 (201)
+.+++++++.++++||.+++..|.+.++ ++|..+.++|+.+++++ +.++. .+++. ++.++ + ....+.++
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~-l~~~~---~~~~~-~~~~~---~-~~~~~~l~~ 71 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLL-LLLTV---GFPRL-RQFPK---R-YLLAGGLLF 71 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHH-HHHHc---ccccc-ccccH---H-HHHHHhHHH
Confidence 5678899999999999999999999886 99999999999999998 77652 11111 11122 2 23344445
Q ss_pred HHHHHHHHHhhcc----cCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccc
Q 028952 82 CCVQTCLYVGIGY----SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS 157 (201)
Q Consensus 82 ~~~~~~~~~gl~~----~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~ 157 (201)
..++.+++.|++| +++++++++.++.|+++.+++++++||| +++++++|++++++|++++...+ ...+.
T Consensus 72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~------~~~~~~~g~~l~~~Gv~li~~~~-~~~~~ 144 (295)
T PRK11689 72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQK------ANWLLIPGLLLALAGVAWVLGGD-NGLSL 144 (295)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHhHhheecCC-ccchh
Confidence 6777777777765 5788899999999999999999999999 67788899999999998876321 10000
Q ss_pred cCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 158 MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
.+ . ..+..+...|+++.++|++|||.|.+++||.
T Consensus 145 ~~----~----~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~ 178 (295)
T PRK11689 145 AE----L----INNIASNPLSYGLAFIGAFIWAAYCNVTRKY 178 (295)
T ss_pred hh----h----hhccccChHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 0 0011123569999999999999999999986
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.84 E-value=2.1e-19 Score=151.44 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~ 83 (201)
+..+..++++++||.+++++|.+.++ +||.++.++|+.++++. ++++.. ++ +.+++ .....|+.. ..
T Consensus 4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~-l~~~~~---~~----~~~~~---~~~~~g~~~~~~ 71 (299)
T PRK11453 4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFP-AIFFVA---RP----KVPLN---LLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH-HHHHhc---CC----CCchH---HHHHHHHHHHHH
Confidence 34467889999999999999999875 99999999999998877 665431 21 12232 344456555 56
Q ss_pred HHHHHHHhhcc-cCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCc
Q 028952 84 VQTCLYVGIGY-SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS 162 (201)
Q Consensus 84 ~~~~~~~gl~~-~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~ 162 (201)
.+.+++.+++| .++++++++.+++|+++.+++++++||| +++++++|++++++|+.++... +.
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~------~~~~~~~~~~l~~~Gv~ll~~~-~~--------- 135 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGER------LQGKQLAGIALAIFGVLVLIED-SL--------- 135 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHhHHHhccc-cC---------
Confidence 66778889998 5889999999999999999999999999 6788899999999999887521 11
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 163 NLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 163 ~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
........|+++.++++++|+.|.+++||.
T Consensus 136 -------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~ 165 (299)
T PRK11453 136 -------NGQHVAMLGFMLTLAAAFSWACGNIFNKKI 165 (299)
T ss_pred -------CCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223579999999999999999999985
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.83 E-value=9.1e-20 Score=153.54 Aligned_cols=164 Identities=10% Similarity=-0.020 Sum_probs=129.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHH
Q 028952 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR--PPLTVSIICKIFGLGL 79 (201)
Q Consensus 2 ~~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~gl 79 (201)
++.|+++.+++++++||.+++..|.. + +++|.++.++|+.++.++ +.++...+++++.. ...+++++.. ...+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFF-MVVLMSICRQWSYLKTLIQTPQKIFM-LAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHHHHcCHHHHHH-HHHHH
Confidence 45578999999999999999999985 4 499999999999999988 77765442211100 0113444333 33566
Q ss_pred HH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCccccc
Q 028952 80 IS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM 158 (201)
Q Consensus 80 ~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~ 158 (201)
++ ..++.++++|++++++++++++.++.|+++.+++++++||| +++++++|+++++.|++++...+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~------~~~~~~~g~~l~~~Gv~li~~~~------- 147 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGER------FRRMQWLAVILAICGVLVQLWTF------- 147 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHHHHHHc-------
Confidence 66 88999999999999999999999999999999999999999 67778899999999998875111
Q ss_pred CCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
++ . ..+.++++++||.|.+.+|+.
T Consensus 148 ------------~~-~----~~~~l~aa~~~a~~~i~~r~~ 171 (296)
T PRK15430 148 ------------GS-L----PIIALGLAFSFAFYGLVRKKI 171 (296)
T ss_pred ------------CC-c----cHHHHHHHHHHHHHHHHHHhc
Confidence 11 1 146888999999999999986
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.81 E-value=9.6e-19 Score=143.80 Aligned_cols=150 Identities=14% Similarity=0.142 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 028952 17 EVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYS 95 (201)
Q Consensus 17 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~~~~~~~gl~~~ 95 (201)
||.+++..|..++.+.||.+..+.|++.+.++ +.++... + .+++++......|.++ .+++.+++.|++|+
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~-l~~~~~~--~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLL-LLPLLRR--R------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHh--c------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999887789999999999999888 7775433 2 1344556777888888 99999999999999
Q ss_pred CcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCch
Q 028952 96 SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNW 175 (201)
Q Consensus 96 ~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (201)
++++++++.++.|+++.+++.+++||| +++++++|++++++|+.++.. ++ +....
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~------~~~~~~~gi~i~~~Gv~li~~-~~------------------~~~~~ 126 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKER------PRKLVLLAAVLGLAGAVLLLS-DG------------------NLSIN 126 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCC------CcHHHHHHHHHHHHhHHhhcc-CC------------------ccccc
Confidence 999999999999999999999999999 677788999999999988752 11 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 028952 176 IIGGLVLAAGSFFLSLLYIVQLDLN 200 (201)
Q Consensus 176 ~~G~~~~l~aa~~~a~~~il~~~~~ 200 (201)
..|+.+.++++++|+.|.+.+|+..
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~ 151 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLV 151 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 6899999999999999999999853
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.76 E-value=7.1e-17 Score=135.78 Aligned_cols=161 Identities=7% Similarity=0.004 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 028952 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISC 82 (201)
Q Consensus 3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~ 82 (201)
+.+++..+++++++|+.+..++|.+.++ .||.++.++|+++++++ ++++... ++ .+.++++++.....|++..
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~-l~~~~~~--~~---~~~~~~~~~~~~~~g~~~~ 82 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLI-LIAIFKP--WR---LRFAKEQRLPLLFYGVSLG 82 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHH-HHHHHhH--Hh---ccCCHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999986 99999999999999998 7765422 21 1335677777778887666
Q ss_pred HHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCc
Q 028952 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS 162 (201)
Q Consensus 83 ~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~ 162 (201)
..+.+++.+++|++++.++++.++.|+++.+++ +|+ +.+ ..++.++++|+.++.. .+.
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~------~~~--~~~~~i~~~Gv~li~~-~~~--------- 140 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRR------PVD--FVWVVLAVLGLWFLLP-LGQ--------- 140 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCC------hHH--HHHHHHHHHHHheeee-cCC---------
Confidence 677889999999999999999999999998765 244 232 3567788999987752 221
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 163 NLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 163 ~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
+.+.....|+++.++++++||.|.+..|+.
T Consensus 141 -------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~ 170 (293)
T PRK10532 141 -------DVSHVDLTGAALALGAGACWAIYILSGQRA 170 (293)
T ss_pred -------CcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111224579999999999999999999885
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.74 E-value=3.3e-16 Score=132.08 Aligned_cols=151 Identities=11% Similarity=0.064 Sum_probs=123.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Q 028952 20 SSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTL 99 (201)
Q Consensus 20 ~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~ 99 (201)
..+..|.++++--.|..+++.|+.++.+. ..+.... ..+++ ++.++++++.++..|+++..++.+.+.|++|+++++
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~ 93 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLY-CLLSWSS-GLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSF 93 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHH-HHHHHHh-CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34578999875356999999999998877 6554211 11222 456788999999999998788899999999999999
Q ss_pred hhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHHH
Q 028952 100 SSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGG 179 (201)
Q Consensus 100 asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 179 (201)
++++.++.|+++.+++++++||| +++++++|++++++|+++.. .+ +......|+
T Consensus 94 ~~li~~~~Pv~~~ll~~~~~~e~------~~~~~~~~l~l~~~Gv~l~~--~~------------------~~~~~~~G~ 147 (302)
T TIGR00817 94 THTIKAMEPFFSVVLSAFFLGQE------FPSTLWLSLLPIVGGVALAS--DT------------------ELSFNWAGF 147 (302)
T ss_pred HHHHHhcchHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHhhhc--CC------------------cccccHHHH
Confidence 99999999999999999999999 67778899999999997643 11 112345799
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 028952 180 LVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 180 ~~~l~aa~~~a~~~il~~~~ 199 (201)
++.++|+++|++|.+.+||.
T Consensus 148 ~~~l~a~~~~a~~~v~~k~~ 167 (302)
T TIGR00817 148 LSAMISNITFVSRNIFSKKA 167 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999885
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.68 E-value=4.4e-15 Score=127.97 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028952 18 VGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPL--TVSIICKIFGLGLISCCVQTCLYVGIGY 94 (201)
Q Consensus 18 g~~~~~~k~~~~~~~~-p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~gl~~~~~~~~~~~gl~~ 94 (201)
.......|.+++. +| |+.++.+|++++.++ ...+... ..+++ ++. .+++++.++..|+++...+...+.|+++
T Consensus 62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~-~~~~~~~-~~~~~-~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~ 137 (350)
T PTZ00343 62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLF-ALLYWAT-GFRKI-PRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGL 137 (350)
T ss_pred HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHH-HHHHHHh-CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556778999886 99 999999999999887 6554322 12122 223 2457788999999883345556799999
Q ss_pred cCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCc
Q 028952 95 SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKN 174 (201)
Q Consensus 95 ~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (201)
++++.+.++-+++|+++.++++++++|| +++++++++++.+.|+.+.... + . ..
T Consensus 138 ~svs~~~iika~~Pvft~lls~~~l~ek------~s~~~~l~l~l~v~Gv~l~~~~-~------------------~-~~ 191 (350)
T PTZ00343 138 GAVSFTHVVKAAEPVFTALLSILFLKQF------LNLYAYLSLIPIVGGVALASVK-E------------------L-HF 191 (350)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHHHHheecc-c------------------c-hh
Confidence 9999999999999999999999999999 6778899999999999987621 1 1 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 175 WIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 175 ~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
...|++++++|+++|+.|.+..|++
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~ 216 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKT 216 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999885
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.67 E-value=4e-15 Score=124.33 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCV 84 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~ 84 (201)
..++.+.++++|+...+.+|...++ -++ ..++++..+.+. +.|+...+.++...+..+++.+. ....+.++ ..+
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 76 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVL-LTPYGLWYLAQVGWSRLPATFWL-LLAISAVANMVY 76 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHH-HHHHHHHhcccCCCCCcchhhHH-HHHHHHHHHHHH
Confidence 3567789999999999999965444 234 347777777777 77876552211111223344433 44444445 899
Q ss_pred HHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccc
Q 028952 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL 164 (201)
Q Consensus 85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 164 (201)
+.+++.|++++++++++.+.++.|+++.+++++++||| +++++++|+.+++.|+.++... +.
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~------~~~~~~~g~~~~~~Gv~ll~~~-~~----------- 138 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGET------LSPLAWLGILIITLGLLVLGLS-RF----------- 138 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHhcc-cc-----------
Confidence 99999999999999999999999999999999999999 6777889999999999887521 11
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 165 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
.+ ....|+.+.++++++|++|.+..|+.
T Consensus 139 ------~~-~~~~g~~~~l~aal~~a~~~i~~k~~ 166 (281)
T TIGR03340 139 ------AQ-HRRKAYAWALAAALGTAIYSLSDKAA 166 (281)
T ss_pred ------cc-cchhHHHHHHHHHHHHHHhhhhcccc
Confidence 11 22468889999999999999998864
No 12
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.61 E-value=1.5e-14 Score=105.44 Aligned_cols=136 Identities=12% Similarity=0.080 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 84 (201)
...++.++++++||...++.|...+. +||..-++.|.+...++ +..+....++.+.....+.|.|..+.+.|+.+.+.
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~-l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls 80 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIF-LLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHH-HHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence 35678899999999999999999975 99999999999999998 88777664544332346788888888888777999
Q ss_pred HHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
..+||.+++.-.++...-+..+.|+++.++++++++|| ++..+++|+++.++|+++++
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~------ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGER------LSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCC------CCHHHHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999 56677899999999998765
No 13
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.61 E-value=3.3e-15 Score=108.84 Aligned_cols=124 Identities=22% Similarity=0.268 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 028952 15 CLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIG 93 (201)
Q Consensus 15 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~~~~~~~gl~ 93 (201)
++||.+.+..|...++ .||.+..++|+..+++. +... ...++++. ...+.+++......|.++ .+++.+++.|++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGIL-LILL-LILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHH-Hhhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4799999999999886 99999999999999852 3322 22233322 456677778888999997 999999999999
Q ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 94 ~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
++++++++.+.+++|+++.++++++++|+ +++++++|+++.+.|++++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~------~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGER------PSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 67788899999999998753
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.60 E-value=9.2e-14 Score=114.81 Aligned_cols=170 Identities=22% Similarity=0.211 Sum_probs=129.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 028952 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS- 81 (201)
Q Consensus 3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~- 81 (201)
..+.....+...+.|+.+....|...+...++....+.|+..+.+. ..+.... ++... .+..+ .+......+.++
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~-~~~~~~~~~~~~~ 80 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALL-LLPLLLL-EPRGL-RPALR-PWLLLLLLALLGL 80 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH-HHHHHHh-hcccc-ccccc-chHHHHHHHHHHH
Confidence 3456778888889999999999998764356677777799998877 5554333 11111 11111 134556666667
Q ss_pred HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHH-HHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCC
Q 028952 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL-ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS 160 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~-~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~ 160 (201)
..++.+++.++++++++.++.+.++.|+++.+++. ++++|| ++++++.|+.+++.|++++...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~------~~~~~~~~~~~~~~Gv~lv~~~~~~------- 147 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGER------LSLLQILGILLALAGVLLILLGGGG------- 147 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCC------CcHHHHHHHHHHHHhHHheecCCCc-------
Confidence 89999999999999999999999999999999997 666999 5677789999999999988632211
Q ss_pred CccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 161 ~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
..+. ...|+++.++++++|+.+.+.+|++
T Consensus 148 ---------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~ 176 (292)
T COG0697 148 ---------GGIL-SLLGLLLALAAALLWALYTALVKRL 176 (292)
T ss_pred ---------chhH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0111 5789999999999999999999975
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.59 E-value=1.9e-13 Score=116.57 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 15 CLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIG 93 (201)
Q Consensus 15 ~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~ 93 (201)
++-..+...+...-++|.+ |..-.+.-+..-.++ ..+...++.+.++..+.-+++|...++++++-..++.+...|.+
T Consensus 23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~v-y~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~ 101 (334)
T PF06027_consen 23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALV-YTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQ 101 (334)
T ss_pred HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHH-HhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555554444554 555555555555555 55554442222111122234455566677766999999999999
Q ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCC
Q 028952 94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQK 173 (201)
Q Consensus 94 ~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (201)
||+.+.+.++.++.-+++.+++++++||| .++.|++|+++|++|+.++...|.... +++..+.
T Consensus 102 yTsvtS~~lL~~~~i~~~~~LS~~fL~~r------y~~~~~~gv~i~i~Gv~lv~~sD~~~~-----------~~~~~~~ 164 (334)
T PF06027_consen 102 YTSVTSVQLLDCTSIPFVMILSFIFLKRR------YSWFHILGVLICIAGVVLVVVSDVLSG-----------SDSSSGS 164 (334)
T ss_pred cccHhHHHhhhhhhhHHHHHHHHHHHHhh------hhHHHHHHHHHHHhhhhheeeeccccc-----------ccCCCCC
Confidence 99999999999999999999999999999 567788999999999998876543211 1122345
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 174 NWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
+..+||+++++|+++||++.++++++
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~ 190 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKL 190 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999875
No 16
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.47 E-value=2e-12 Score=106.13 Aligned_cols=130 Identities=20% Similarity=0.196 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 028952 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSD--FVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (201)
Q Consensus 4 ~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p--~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 81 (201)
.++++..++++++|+.+.+..|...++ .+| .....+|+.++.++ +.|.....++. ...+.+++..+.+.++++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALL-LLPFAWFLGPN---PQALSLQWGALLYLGLIG 201 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHH-HHHHHHhcCCC---CCcchHHHHHHHHHHHHH
Confidence 468889999999999999999998764 664 45555789999998 88876653322 233677778888899998
Q ss_pred -HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhh
Q 028952 82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGA 144 (201)
Q Consensus 82 -~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv 144 (201)
..++.+|+.++++.++++++.+.+++|+++.++++++++|+ ++..+++|..+.+.|+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~------~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGET------LSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999 6677889999999986
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.47 E-value=2.7e-12 Score=107.99 Aligned_cols=169 Identities=14% Similarity=0.043 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 85 (201)
.++..++++++||...+..|... |.++.++. |..++.++ +..+... .|+. ++.+++.+..-...|++-...|
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~-~~~~~~~-~~~~--~~~~~~~~~~g~l~G~~w~ig~ 73 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALI-LSIAIAI-FVLP--EFWALSIFLVGLLSGAFWALGQ 73 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHH-HHHHHHH-HhCC--cccccHHHHHHHHHHHHHHhhh
Confidence 36788899999999999999864 68887775 78888877 6555444 2221 1112333333334444447788
Q ss_pred HHHHHhhcccCcchhhhhcc-cchHHHHHHHHHHHHhhcchhhhchhhh----HHHHHHHhhhhhheeeecCCcccccCC
Q 028952 86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAK----SIGTMVSIAGALTVTLYKGPALVSMSS 160 (201)
Q Consensus 86 ~~~~~gl~~~~a~~asil~~-~~Pv~~~l~a~~~~~E~~~~r~~~s~~~----~~g~~l~~~Gv~ll~~~~~~~~~~~~~ 160 (201)
.+++.+.++++.+.+-.+.+ +.|++..+.+.+++||| +++++ ++|+++++.|++++...++...
T Consensus 74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~------~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~----- 142 (290)
T TIGR00776 74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEW------STSIQTLLGLLALILIIIGVYLTSRSKDKSA----- 142 (290)
T ss_pred hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhc------cchHHHHHHHHHHHHHHHhHheEEecccccc-----
Confidence 99999999999999999988 88899999999999999 56667 9999999999988754321100
Q ss_pred CccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028952 161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDLN 200 (201)
Q Consensus 161 ~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~~ 200 (201)
++.+..+..+|.++.++|+++|+.|.+..|...
T Consensus 143 -------~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~~ 175 (290)
T TIGR00776 143 -------GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAFG 175 (290)
T ss_pred -------ccccccchhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000002346799999999999999999988754
No 18
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.31 E-value=6.9e-11 Score=99.42 Aligned_cols=132 Identities=12% Similarity=0.064 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~ 83 (201)
.+.+..++++++|+.+.+..|...++ .+|.... +-..++++. +.|+....+. . ...++..+...++.|+++ .+
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~-~~~~~~~~~-l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAE-HGPATVA-IGSLIAALI-FVPIGALQAG--E-ALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHH-HHHHHHHHH-HHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999998654 7887765 445666776 7776654222 1 224555666677899999 89
Q ss_pred HHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 84 ~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
++.+|+.++++.++++++.+.+++|+++.++++++++|+ ++..+++|..+.+.|++...
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~------~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGET------LTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 67778899999999998765
No 19
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.28 E-value=8.6e-11 Score=98.78 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~ 83 (201)
++.+..++++++|+.+.+..|... . -++...+++++.++++. +.++....+.... ...+.+.+..+.+.++++ .+
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVV-LLIASLLSGERLT-ALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHH-HHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999863 2 34566778899999888 8877654322111 123567888899999998 89
Q ss_pred HHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 84 ~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
++.+|+.++++.++++++.+.+++|+++.++++++++|+ ++..+++|.++.+.|+++..
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~------~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGET------LSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC------CcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 67778899999999998764
No 20
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.25 E-value=3.1e-10 Score=93.79 Aligned_cols=164 Identities=13% Similarity=-0.015 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHH
Q 028952 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR--PPLTVSIICKIFGLGLIS 81 (201)
Q Consensus 4 ~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~gl~~ 81 (201)
.|+++..+.+.++||..+...|.. +. .++.++...|.+.+..+ ++.+....++++.. ...++|.+....+.++.-
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~-~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPF-MLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 579999999999999999999986 54 89999999999999998 66655543332221 123556666666666666
Q ss_pred HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCC
Q 028952 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 161 (201)
..+...|.++.++-..-++|.=.+.+|++..+++.+++||| .++.|++++.++.+||.......|
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkEr------ls~~Q~iAV~lA~~GV~~~~~~~g--------- 147 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKER------LSRLQWIAVGLAAAGVLIQTWLLG--------- 147 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 88889999999999999999999999999999999999999 688999999999999987653222
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028952 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDLN 200 (201)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~~ 200 (201)
+. .+ ..+.=+++|+.|-.+-|++.
T Consensus 148 ----------~l-pw----val~la~sf~~Ygl~RK~~~ 171 (293)
T COG2962 148 ----------SL-PW----VALALALSFGLYGLLRKKLK 171 (293)
T ss_pred ----------CC-cH----HHHHHHHHHHHHHHHHHhcC
Confidence 11 12 24455778899988887764
No 21
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.25 E-value=1.4e-11 Score=89.58 Aligned_cols=104 Identities=21% Similarity=0.309 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHH
Q 028952 39 VYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL 116 (201)
Q Consensus 39 ~~R~~~a~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~ 116 (201)
.+|+.++.++ +..+....++.++ .+..+.+.+......|+++ ..++.+++.|+++.+ +.++.+.+++|+++.++++
T Consensus 2 a~r~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLF-LLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHH-HHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 5799999998 7777666322111 0122334455666778888 699999999999999 5888999999999999999
Q ss_pred HHHHhhcchhhhchhhhHHHHHHHhhhhhheeee
Q 028952 117 ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY 150 (201)
Q Consensus 117 ~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~ 150 (201)
+++||| +++++++|++++++|++++...
T Consensus 80 ~~~~er------~~~~~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 80 LFFKER------LSPRRWLAILLILIGVILIAWS 107 (113)
T ss_pred HHhcCC------CCHHHHHHHHHHHHHHHHHhhh
Confidence 999999 5677789999999999998743
No 22
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.23 E-value=8.7e-10 Score=89.45 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 85 (201)
+++.++.+++.-=...-+.|..+.. .+|.-.+.+|..+++++ ++++..- +| .+.+++++..+...|..-...|
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLI-ll~l~RP-wr----~r~~~~~~~~~~~yGvsLg~MN 85 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALI-LLALFRP-WR----RRLSKPQRLALLAYGVSLGGMN 85 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHH-HHHHhhH-HH----hccChhhhHHHHHHHHHHHHHH
Confidence 5778888888877888899999987 99999999999999998 7765432 12 3567788888988887667778
Q ss_pred HHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCcccc
Q 028952 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH 165 (201)
Q Consensus 86 ~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~ 165 (201)
.++|.+++.++-+.+..+.++-|+....+. .+| .+..+-+.+.+.|..++.-. +.
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr--------~~d~vwvaLAvlGi~lL~p~-~~------------ 140 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRR--------LRDFVWVALAVLGIWLLLPL-GQ------------ 140 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHh----ccc--------hhhHHHHHHHHHHHHhheec-cC------------
Confidence 889999999999999999999999877653 222 23456688899998877522 21
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 166 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
+.+..+..|..+++.+..||+.|++..+|.
T Consensus 141 ----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~ 170 (292)
T COG5006 141 ----SVWSLDPVGVALALGAGACWALYIVLGQRA 170 (292)
T ss_pred ----CcCcCCHHHHHHHHHHhHHHHHHHHHcchh
Confidence 233456899999999999999999998874
No 23
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.21 E-value=1.1e-10 Score=99.11 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcc
Q 028952 76 GLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL 155 (201)
Q Consensus 76 ~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~ 155 (201)
....+-++++..++.++.+|+.+..+++..+..+|+..++.++..|| .++.|.+++.+++.|++++...++.
T Consensus 164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~------ft~sKllav~~si~GViiVt~~~s~-- 235 (416)
T KOG2765|consen 164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVER------FTLSKLLAVFVSIAGVIIVTMGDSK-- 235 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcch------hhHHHHHHHHHhhccEEEEEecccc--
Confidence 33333388999999999999999999999999999999999999999 5777899999999999988765432
Q ss_pred cccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 028952 156 VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLD 198 (201)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~ 198 (201)
|+++....+...|+++++++|+.||+|+++-|+
T Consensus 236 ----------~~~~~~a~~~llG~llaL~sA~~YavY~vllk~ 268 (416)
T KOG2765|consen 236 ----------QNSDLPASRPLLGNLLALLSALLYAVYTVLLKR 268 (416)
T ss_pred ----------ccccCCccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 222344556789999999999999999999886
No 24
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.19 E-value=5e-10 Score=94.29 Aligned_cols=131 Identities=16% Similarity=0.098 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 84 (201)
.+.+.+++++++|+.+.+..|...+ +.+|.... +..+++. +.+.... .. ......+.+.+..+.+.++...+.
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~---~~~~~~~-l~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~t~~~ 228 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLF---FILTALA-LWIKYFL-SP-QPAMVFSLPAIIKLLLAAAAMGFG 228 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHH---HHHHHHH-HHHHHHH-hc-CccccCCHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999754 47877653 2334444 4443333 22 111235667777777777533889
Q ss_pred HHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
+.+|+.++++.++++++.+.+++|+++.++++++++|+ ++..+++|.++.+.|+++..
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~------~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTP------LSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999999999 67778899999999987764
No 25
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.19 E-value=7.6e-10 Score=95.77 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCHHHHHHHHHHHHHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSD-FVLIVYSNAFAAIFILLPSTFIYYRNRTR---PPLTVSIICKIFGLGLIS 81 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~i~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~gl~~ 81 (201)
+.++++.++++|+.+.+..|...++ ++| ...+++...++++. +.+.....++.... ...+... ..+++.++..
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t 266 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIV-TSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHH-HHHHHHHHccCCcccceeccchHH-HHHHHHHHHH
Confidence 5678889999999999999988765 655 46677777777776 66555553432110 1123332 3355556544
Q ss_pred HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~ 149 (201)
.+++.+|++++++.+|++++.+.+++|+++.++++++++|+ ++..+++|.++.+.|+++...
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~------lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDS------LYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHHHHHh
Confidence 77888999999999999999999999999999999999999 566678999999999988753
No 26
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.14 E-value=2.7e-11 Score=98.87 Aligned_cols=174 Identities=14% Similarity=0.198 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028952 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT 86 (201)
Q Consensus 7 ~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~ 86 (201)
.++.-++ ..+....++.+...+ .+|.+..-.|+++-.+. ..|...+....-.-++ ..| +.+.+.|+.|+....
T Consensus 40 l~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mli-t~pcliy~~~~v~gp~-g~R--~~LiLRg~mG~tgvm 112 (346)
T KOG4510|consen 40 LLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLI-TYPCLIYYMQPVIGPE-GKR--KWLILRGFMGFTGVM 112 (346)
T ss_pred ceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhh-hheEEEEEeeeeecCC-CcE--EEEEeehhhhhhHHH
Confidence 3344444 556666666666554 58999999997665555 5554433111110011 111 335567877755556
Q ss_pred HHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccC
Q 028952 87 CLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHN 166 (201)
Q Consensus 87 ~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 166 (201)
..|++++|++-++|+++.+..|+++.+++++++||| .++.+.+|.++.+.|++++. .|.+-+++.. ++
T Consensus 113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~------~t~~eaL~s~itl~GVVLIv---RPpFlFG~~t---~g 180 (346)
T KOG4510|consen 113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEP------FTKFEALGSLITLLGVVLIV---RPPFLFGDTT---EG 180 (346)
T ss_pred HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCC------CcHHHHHHHHHhhheEEEEe---cCCcccCCCc---cc
Confidence 677899999999999999999999999999999999 68889999999999999886 2333332221 11
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 167 ELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 167 ~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
++.+....+..|.+..+.+++.-|.-.|+.+++
T Consensus 181 ~~~s~~~~~~~gt~aai~s~lf~asvyIilR~i 213 (346)
T KOG4510|consen 181 EDSSQVEYDIPGTVAAISSVLFGASVYIILRYI 213 (346)
T ss_pred cccccccccCCchHHHHHhHhhhhhHHHHHHHh
Confidence 111112334567888888887777666655543
No 27
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.10 E-value=3.6e-09 Score=89.22 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCCCHHHHHHHHHH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSD---FVLIVYSNAFAAIFILLPSTFIYYRNRT----RPPLTVSIICKIFGL 77 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p---~~~~~~R~~~a~i~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 77 (201)
.+.++.++++++|+.+.+..|...++ .++ .....+-...+.+. +.+.....+.... ....+.+.+..++++
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIP-FFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHH-HHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 47889999999999999999987543 332 23334444444433 3333222222110 023467788999999
Q ss_pred HHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952 78 GLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (201)
Q Consensus 78 gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~ 149 (201)
|+++ .+.+.+|+.++++.++++++.+.+++|+++.++++++++|+ ++..+++|.++.+.|+++...
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~------~~~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDER------LTGLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHHHHHHhc
Confidence 9999 89999999999999999999999999999999999999999 677788999999999987643
No 28
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.06 E-value=2.1e-09 Score=89.83 Aligned_cols=132 Identities=16% Similarity=0.029 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDF----VLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI 80 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~----~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 80 (201)
++....++++++|+.+.+..|...+ +.+|. ....+.+...++. +.++....++ .. ...+.+.+..+.+.+.+
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 219 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWP-FLLLYLKRHG-RS-MFPYARQILPSATLGGL 219 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHH-HHHHHHHHhc-cc-hhhhHHHHHHHHHHHHH
Confidence 4566788999999999999987533 24443 2333333333222 2222221111 11 11122333455666666
Q ss_pred H-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952 81 S-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (201)
Q Consensus 81 ~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l 146 (201)
. .+.+.+|+.++++.++++++.+.+++|+++.++++++++|+ ++..+++|..+.+.|+++
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~------~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNER------WYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHhHHh
Confidence 6 88999999999999999999999999999999999999999 677788999999999875
No 29
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.04 E-value=1.6e-09 Score=91.26 Aligned_cols=137 Identities=18% Similarity=0.145 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-C-------CCHHH-HHHH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP-P-------LTVSI-ICKI 74 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~-~-------~~~~~-~~~~ 74 (201)
.+.+..++++++|+.+.+..|...++ ++||..+..+.+..+++. +.|+....+...... . .+... +...
T Consensus 145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFL-LSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 47788999999999999999998761 489999999999999998 899876533211000 0 01111 1112
Q ss_pred HHHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 75 FGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 75 ~~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
+..+... ...+.+++.++++++|+.+++..++.|+++.++++++++|+ ++..+++|.++++.|+++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~------lt~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK------ISPQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCC------CchhHHHHHHHHHHHHHHHH
Confidence 2333323 44456777899999999999999999999999999999999 56677899999999998765
No 30
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.89 E-value=7.8e-08 Score=72.77 Aligned_cols=133 Identities=19% Similarity=0.248 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------C----CCHHH
Q 028952 7 TAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP------P----LTVSI 70 (201)
Q Consensus 7 ~l~l~~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~------~----~~~~~ 70 (201)
.+..+.+.++.+...+..|..+++ +.+|.++..+-...+.++ +.|.....++.+..+ . .+.+.
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFII-LLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 567889999999999999998876 689999999999999999 999888766543100 0 02344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952 71 ICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (201)
Q Consensus 71 ~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l 146 (201)
+..+...|+++.+.+...+..+++++|...++..+.-.+.+.++++++++|+ ++..++.|+++++.|++.
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~------~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEP------ITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCc------CCHHHHHHHHHHHHHHhe
Confidence 5556666776689999999999999999999999999999999999999999 566778999999999875
No 31
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.85 E-value=2.9e-07 Score=77.85 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=114.3
Q ss_pred HHHHHHHhc-CCC--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 028952 22 TLNKAAMNK-GTS--DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPT 98 (201)
Q Consensus 22 ~~~k~~~~~-~~~--p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~ 98 (201)
+..+...+. +.. |..+++.++....+. -.+.... .+++ +.++..++.....++...++..+.+.+++|++.+
T Consensus 17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~-~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p 91 (303)
T PF08449_consen 17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALF-SFILLSL-FKFP---KSRKIPLKKYAILSFLFFLASVLSNAALKYISYP 91 (303)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHH-HHHHHHh-cccc---CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 444444433 234 889999999998887 6655443 2211 1223333556667766688889999999999999
Q ss_pred hhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHH
Q 028952 99 LSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIG 178 (201)
Q Consensus 99 ~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 178 (201)
.-.++-...|+.+++++.+++++| .+++|++++++..+|+++....+..... ++.....+...|
T Consensus 92 ~~~~~ks~~~i~vmi~~~l~~~k~------y~~~~~~~v~li~~Gv~~~~~~~~~~~~----------~~~~~~~~~~~G 155 (303)
T PF08449_consen 92 TQIVFKSSKPIPVMILGVLILGKR------YSRRQYLSVLLITIGVAIFTLSDSSSSS----------SSNSSSFSSALG 155 (303)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcc------ccHHHHHHHHHHHhhHheeeeccccccc----------ccccccccchhH
Confidence 999999999999999999999999 6788899999999999987755432110 001111223349
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 028952 179 GLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 179 ~~~~l~aa~~~a~~~il~~~~ 199 (201)
+++.+++.++-+...+.|+++
T Consensus 156 ~~ll~~sl~~~a~~~~~qe~~ 176 (303)
T PF08449_consen 156 IILLLLSLLLDAFTGVYQEKL 176 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986
No 32
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.80 E-value=1.1e-07 Score=80.22 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028952 8 AVMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT 86 (201)
Q Consensus 8 l~l~~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~ 86 (201)
+..++++++|+.+.+..|...++. .++.....+-..++.+. ..+... .........++..+..+...|+.+.+++.
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~t~i~~~ 228 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY-LFAIAD--SSTSHMGQNPMSLNLLLIAAGIVTTVPLL 228 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH-HHHHcc--CCcccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999864321 12233334444444433 322211 01000011122233334445554488999
Q ss_pred HHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 87 CLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 87 ~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
+++.++++.+++.++.+.+++|+++.++++++++|+ ++..+++|..+.+.|+.++.
T Consensus 229 ~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~------~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 229 CFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEK------PGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 67778899999988887664
No 33
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.79 E-value=2.2e-07 Score=80.26 Aligned_cols=137 Identities=14% Similarity=0.097 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC----------CCCCCH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT----------RPPLTV 68 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~----------~~~~~~ 68 (201)
.+.+..++++++|+...+..|..+++ ..++.....+....++++ ++|+....+.... ......
T Consensus 194 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 194 LAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLI-SLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 47889999999999999999998764 256777777778899998 9998764432110 000111
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhe
Q 028952 69 SIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (201)
Q Consensus 69 ~~~~~~~~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll 147 (201)
.........+.+. .+.+...+.++++++|..+++..++.|+++.++++++++|+ .+..+++|.++.+.|+++.
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~------lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ------VTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCC------CchHhHHHHHHHHHHHHHH
Confidence 1111112222222 44444555799999999999999999999999999999999 5667789999999999865
Q ss_pred e
Q 028952 148 T 148 (201)
Q Consensus 148 ~ 148 (201)
+
T Consensus 347 s 347 (350)
T PTZ00343 347 S 347 (350)
T ss_pred h
Confidence 3
No 34
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.76 E-value=1.2e-07 Score=79.91 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH---HHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 028952 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSN---AFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI 80 (201)
Q Consensus 4 ~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~---~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 80 (201)
.|+.+..+++.+.|+.+.+..|.. +.||.+.++... .+++.+ +.+.. ++.+ +.. .+........|++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~-~~~~~----~~~~-~~~-~~~~~~~~~~Gi~ 220 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGII-FNLGH----ILAK-PLK-KYAILLNILPGLM 220 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHH-HHHHH----hccc-chH-HHHHHHHHHHHHH
Confidence 579999999999999999999975 378998854444 444444 33322 1112 222 2233334447776
Q ss_pred HHHHHHHHHHhhc-ccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhH----HHHHHHhhhhhhee
Q 028952 81 SCCVQTCLYVGIG-YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKS----IGTMVSIAGALTVT 148 (201)
Q Consensus 81 ~~~~~~~~~~gl~-~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~----~g~~l~~~Gv~ll~ 148 (201)
-..++.+|+.+.+ +.+++.++++.+.+|+.+.+.+++++||+ .+++++ +|.++.+.|+.++.
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~------~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEK------KTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccC------CCcceeehhHHHHHHHHHHHHHHh
Confidence 6788889999999 99999999999999999999999999999 566667 99999999998764
No 35
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.72 E-value=5.5e-07 Score=74.19 Aligned_cols=132 Identities=18% Similarity=0.166 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 028952 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS- 81 (201)
Q Consensus 4 ~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~- 81 (201)
..+.+..+.++++|+.+.+..|... + .++..... +.+...... ..+... .... ...+.+.+......|+++
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~ 225 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLL-LLLFFL--SGFG--APILSRAWLLLLYLGVFST 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHH-HHHHHh--cccc--ccCCHHHHHHHHHHHHHHH
Confidence 3678889999999999999999876 3 67777776 444422222 222211 1111 234577788888999998
Q ss_pred HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
...+.+++.++++.+++.++.+..++|+++.++++++++|+ ++..+++|..+.+.|+.+..
T Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~------~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 226 GLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEP------LSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999 67778899999999998764
No 36
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.53 E-value=3.1e-06 Score=72.52 Aligned_cols=140 Identities=14% Similarity=0.020 Sum_probs=108.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHHH
Q 028952 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR-PPLTVSIICKIFGLGLIS 81 (201)
Q Consensus 3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~gl~~ 81 (201)
+.++.++++.++.+||.+.+.-+...++ .|+.++...=.+++.++ ..+.....+++... .+.+.+....+ ....++
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii-~~iq~~ile~~~i~~~~w~~~~~~~~-v~~~~~ 242 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFII-SGIQLAILERSGIESIHWTSQVIGLL-VGYALC 242 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHH-HHHHHHheehhhhhccCCChhhHHHH-HHHHHH
Confidence 4678999999999999999999998876 89999999988999988 88877776765431 12344443322 222333
Q ss_pred -HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeec
Q 028952 82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (201)
Q Consensus 82 -~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~ 151 (201)
...+.+....+++++|+...+=.-+..+++.++..++++|+ +++..++|.++.++|.++....+
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~------~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYK------FSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCcc------ccHHHHHHHHHHHHHhheEEccC
Confidence 56666778899999998777777788899999999999999 56677899999999998876443
No 37
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.50 E-value=2.3e-06 Score=69.76 Aligned_cols=129 Identities=15% Similarity=0.104 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCV 84 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~ 84 (201)
+..+.+.+..+|+.+-+..|.+-+. .+-..-+..-+.+++++ .+|+..-.. .. .-.+++.+..-+..|+++ .+.
T Consensus 149 Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAavi-v~Pig~~~a--g~-~l~~p~ll~laLgvavlSSalP 223 (292)
T COG5006 149 GVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALI-VLPIGAAQA--GP-ALFSPSLLPLALGVAVLSSALP 223 (292)
T ss_pred HHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHH-Hhhhhhhhc--ch-hhcChHHHHHHHHHHHHhcccc
Confidence 5667889999999999999988544 56677788889999999 999865421 11 234666667777888999 999
Q ss_pred HHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhh
Q 028952 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL 145 (201)
Q Consensus 85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ 145 (201)
+.+...+++..++..-+++.+++|.+..+.++++++|+ ++..|++|+...+++.+
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~------ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGET------LTLIQWLAIAAVIAASA 278 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 56667788888877764
No 38
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.50 E-value=2.7e-06 Score=69.98 Aligned_cols=125 Identities=15% Similarity=0.164 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhh
Q 028952 66 LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL 145 (201)
Q Consensus 66 ~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ 145 (201)
.++|+...+.+-+++-.+.+.+.+.++++++|+.-.++.++-.++++++.++++|+| .+++||+++++.+.|+.
T Consensus 12 ~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~------ls~~qW~aL~lL~~Gv~ 85 (244)
T PF04142_consen 12 KSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRR------LSRRQWLALFLLVAGVV 85 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcc------cchhhHHHHHHHHHHHh
Confidence 356777778888887788999999999999999999999999999999999999999 56777899999999998
Q ss_pred heeeecCCcccccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 146 TVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 146 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
+....+....+.. . ..+.+...+..+...|.+.++.++++=++--+..+|+
T Consensus 86 lv~~~~~~~~~~~-~--~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~ 136 (244)
T PF04142_consen 86 LVQLSSSQSSDNS-S--SSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKL 136 (244)
T ss_pred eeecCCccccccc-c--ccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8764332210000 0 0000001123456899999999999999988888765
No 39
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.43 E-value=2.7e-06 Score=61.69 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=59.4
Q ss_pred HHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 76 ~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
..++.+ .+.+.++..++++.|.+.+-.+.++.|+++.++++++++|| ++.+|++|+.+.++|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~------ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEP------VSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHh
Confidence 334466 78899999999999999999999999999999999999999 56677899999999998764
No 40
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.25 E-value=2.4e-05 Score=58.22 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCV 84 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~ 84 (201)
++++++.+.++=+...++.|...++ .++.+.... . ...+. . . . +. ....+.|+++ .++
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~-----~-~--~-------~p---~~~i~lgl~~~~la 61 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL-----A-F--G-------LA---LRAVLLGLAGYALS 61 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH-----H-H--h-------cc---HHHHHHHHHHHHHH
Confidence 6778888888888889999998875 544432221 1 11111 0 0 1 01 2246788888 899
Q ss_pred HHHHHHhhcccCcchhhhhcccchHHHHHHHHH--HHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALI--SRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~--~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
+.+|..++++.+++.+.-+.+..|+++.+.++. +++|++ +..|++|+.+.++|++++.
T Consensus 62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~l------s~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETF------SLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988888888887774 799995 5667899999999999875
No 41
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.19 E-value=0.00037 Score=59.52 Aligned_cols=178 Identities=13% Similarity=0.081 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHhhc--CC-CC------CCCHHHHHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYRN--RT-RP------PLTVSIICK 73 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~i~~l~~~~~~~~~~--~~-~~------~~~~~~~~~ 73 (201)
-++.++...+.++...+..|..-..+ +.|.+..+.-=++-.++ .....+...|+ ++ .. ..++++...
T Consensus 16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~-c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVF-CLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 45677788889999999999986555 55666666666666666 55554443222 11 01 123445556
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCC
Q 028952 74 IFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGP 153 (201)
Q Consensus 74 ~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~ 153 (201)
+.+-+++-++.+.+++.++.+.+|+.-.+..++--+.++++..+++++|+ +++||.++++..+|+.++.....+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkL------s~~Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKL------SRLQWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHhccCCC
Confidence 66667776777889999999999999999999999999999999999995 566789999999999987622111
Q ss_pred cccccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
. + ++.+.....+...|...++.+++.-++.-+.-+|+
T Consensus 169 ~-~--------~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEki 205 (345)
T KOG2234|consen 169 P-T--------GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKI 205 (345)
T ss_pred C-C--------CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 01112334577899999999998888777665554
No 42
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.01 E-value=1.4e-05 Score=63.21 Aligned_cols=94 Identities=20% Similarity=0.241 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCC
Q 028952 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 161 (201)
++.++.|..+++.++|++++.+....-.|+.+++++.+++| ....|+++.++++.|++.+.+.+.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~------~~~~kIlaailAI~GiVmiay~DN--------- 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDR------FMGFKILAAILAIGGIVMIAYADN--------- 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccc------hhhhhHHHHHHHhCcEEEEEeccc---------
Confidence 57789999999999999999999999999999999999999 456788999999999998875432
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
+-.+.++|..+++.|+..-|.|=++-|+.
T Consensus 129 ---------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~ 157 (290)
T KOG4314|consen 129 ---------EHADEIIGIACAVGSAFMAALYKVLFKMF 157 (290)
T ss_pred ---------hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22356899999999999999999988764
No 43
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.94 E-value=3.2e-05 Score=65.80 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=113.3
Q ss_pred HHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 028952 21 STLNKAAMN--KGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPT 98 (201)
Q Consensus 21 ~~~~k~~~~--~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~ 98 (201)
....|..++ ..--|..++..+...+.+. +.........+.. +..++..+..++-+|++..+.-.+-+.+++|.+.+
T Consensus 33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~-~~v~~~l~~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~Vs 110 (316)
T KOG1441|consen 33 IILNKYILSKYGFPFPITLTMLHLFCGALA-LLVIKVLKLVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVS 110 (316)
T ss_pred EEeeHhhhccCCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccchh
Confidence 345677777 3234899999977777776 5443332112111 22234456777788887788888889999999999
Q ss_pred hhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHH
Q 028952 99 LSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIG 178 (201)
Q Consensus 99 ~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 178 (201)
..-.+=.++|+++.++.+++.+|+.+ +...+.++..+.|+.+.+.. +..-...|
T Consensus 111 F~q~iKa~~P~~tvl~~~~~~~~~~s------~~~~lsL~piv~GV~ias~~--------------------e~~fn~~G 164 (316)
T KOG1441|consen 111 FYQTIKALMPPFTVLLSVLLLGKTYS------SMTYLSLLPIVFGVAIASVT--------------------ELSFNLFG 164 (316)
T ss_pred HHHHHHhhcchhHHHHHHHHhCCCCc------ceEEEEEEEeeeeEEEeeec--------------------cccccHHH
Confidence 99999999999999999999999954 44557788888888776532 22245789
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 028952 179 GLVLAAGSFFLSLLYIVQLDLN 200 (201)
Q Consensus 179 ~~~~l~aa~~~a~~~il~~~~~ 200 (201)
...++.+.+..+.-.|++|++.
T Consensus 165 ~i~a~~s~~~~al~~I~~~~ll 186 (316)
T KOG1441|consen 165 FISAMISNLAFALRNILSKKLL 186 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998864
No 44
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.89 E-value=3.6e-07 Score=74.58 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028952 12 AVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYV 90 (201)
Q Consensus 12 ~~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~ 90 (201)
++.++=+.++.-+..+ +.|++ |..=++.-+..-+++ ..|+..++. + . .+..|++ .++++++-.=++.+-..
T Consensus 26 LSL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalV-Y~~~~~fR~-~-~-~~~~~~h---Yilla~~DVEaNy~vV~ 97 (336)
T KOG2766|consen 26 LSLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALV-YGPIMLFRR-K-Y-IKAKWRH---YILLAFVDVEANYFVVK 97 (336)
T ss_pred HHHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHH-HhhHHHhhh-H-H-HHHHHHH---hhheeEEeecccEEEee
Confidence 3334444444444443 34444 777778888887887 777776622 1 1 2233444 55666555566667778
Q ss_pred hhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCC
Q 028952 91 GIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRS 170 (201)
Q Consensus 91 gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~ 170 (201)
|.|||+-+.+..+-+-.-..+.++.++++|.| ..+.|+.|+++|+.|+..+.+.+-.. .+..
T Consensus 98 AyQyTsmtSi~lLDcwaip~v~~lsw~fLktr------Yrlmki~gV~iCi~GvvmvV~sDV~a------------gd~a 159 (336)
T KOG2766|consen 98 AYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTR------YRLMKISGVVICIVGVVMVVFSDVHA------------GDRA 159 (336)
T ss_pred ehhhcchHHHHHHHHhhhHHHHHHHHHHHHHH------HhhheeeeEEeEecceEEEEEeeecc------------cccc
Confidence 99999999999998876667888899999999 67788999999999999887654221 1123
Q ss_pred CCCchHHHHHHHHHHHHHHHHH
Q 028952 171 PQKNWIIGGLVLAAGSFFLSLL 192 (201)
Q Consensus 171 ~~~~~~~G~~~~l~aa~~~a~~ 192 (201)
++.+-.+||.+++.++=+||.-
T Consensus 160 ggsnp~~GD~lvi~GATlYaVS 181 (336)
T KOG2766|consen 160 GGSNPVKGDFLVIAGATLYAVS 181 (336)
T ss_pred CCCCCccCcEEEEecceeeeec
Confidence 4456678888888888887753
No 45
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.86 E-value=0.00048 Score=57.32 Aligned_cols=117 Identities=12% Similarity=0.015 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcc-cchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952 68 VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (201)
Q Consensus 68 ~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~-~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l 146 (201)
.+.+..-++.|++-.+.|..++.+.++.+.+++--+.. +.=+.+.++++++++|.=+.+.+ ..-.+++++.++|+++
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~l 119 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVIL 119 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHH
Confidence 46767777777777999999999999999999999987 55556888999999998433221 1234577888899987
Q ss_pred eeeecCCcccccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 028952 147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLD 198 (201)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~ 198 (201)
-+..++.+. ..+++.+...|.+.++++++.|..|.+..+-
T Consensus 120 ts~~~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 120 TSYQDKKSD------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred hcccccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 654332210 0112346678999999999999999988653
No 46
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.81 E-value=0.00046 Score=56.68 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCCC-CCHHHHHHHHHHHHHHHHH
Q 028952 9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFI---YYRNRTRPP-LTVSIICKIFGLGLISCCV 84 (201)
Q Consensus 9 ~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~---~~~~~~~~~-~~~~~~~~~~~~gl~~~~~ 84 (201)
..++++++|+.+.+..|...+ .++.+.... ... +.|.... ......... ...++|..+...|++..++
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~ 221 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKN--TDLAGFCLE-----TLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTP 221 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCC--CCcchHHHH-----HHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHH
Confidence 567889999999999998643 233332221 122 2222211 111111011 1234778888888766889
Q ss_pred HHHHHHhhcccCcchhhhhcccchHHHHHHHHHH
Q 028952 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALIS 118 (201)
Q Consensus 85 ~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~ 118 (201)
+.+++.|+++.+++.++.+.+++|+++.+++.+.
T Consensus 222 ~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 222 LLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998754
No 47
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.72 E-value=0.00055 Score=56.95 Aligned_cols=132 Identities=12% Similarity=0.001 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 028952 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISC 82 (201)
Q Consensus 3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~ 82 (201)
..|.++.++++.+.|..+..+.|.. +.||.+...-+.+.-.+. -..+.... + + +..+++.++. ...|++-.
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~-a~i~~~~~-~--~-~~~~k~~~~n-il~G~~w~ 206 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIG-AFIFNLFS-K--K-PFFEKKSWKN-ILTGLIWG 206 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHH-HHHHhhcc-c--c-cccccchHHh-hHHHHHHH
Confidence 3568999999999999999998874 378887776554443333 33332221 1 1 2223344343 45666667
Q ss_pred HHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhh
Q 028952 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL 145 (201)
Q Consensus 83 ~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ 145 (201)
..+.+++.+.+..+.+.+=.+.++.+++..+.+.+++||+=+.|.+ ....+|.++.+.|.+
T Consensus 207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence 8888999999999999999999999999999999999999332221 234566666666664
No 48
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.69 E-value=0.001 Score=56.25 Aligned_cols=136 Identities=19% Similarity=0.212 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHH--HhhcCC-C--CCCCHHHHHHHHHHHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFI--YYRNRT-R--PPLTVSIICKIFGLGL 79 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~~--~~~~~~-~--~~~~~~~~~~~~~~gl 79 (201)
+++.++++.++-|...+..+...++ +.+|.+..++-..++.++ ..+.... .+.... . .....+.+..++...+
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~-~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPF-LLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 7889999999999999999988854 688999999999999988 7766555 211111 0 0112334456666666
Q ss_pred HHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 80 ~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
.+...+.+.+.-.++.+|...+++..+--+++.+++.++++++ .+..++.|+++.+.|..+-.
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~------~~~~~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHP------LSPLQWIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCc------CChHHHHHHHHhHHHHHHHH
Confidence 6677777778889999999999999999999999999999999 45667899999999987643
No 49
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.47 E-value=0.0021 Score=55.38 Aligned_cols=177 Identities=11% Similarity=0.029 Sum_probs=113.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHH--HHhhcC--CCCCCCHHHHHHHHHH
Q 028952 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVY-SNAFAAIFILLPSTF--IYYRNR--TRPPLTVSIICKIFGL 77 (201)
Q Consensus 3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~-R~~~a~i~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~ 77 (201)
-..+++..++++++||+.++-.|.. ++ . +++.... -.+++.+ +.|+.. ...+.- .....+.+.+..-++.
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w-~wE~~W~v~gi~~wl--~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-KK-W-SWETMWSVGGIFSWL--ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-CC-C-chhHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 4568899999999999999999983 33 2 3332211 1112222 223211 111110 0023456666666677
Q ss_pred HHHHHHHHHHHHHhhcccCcchhhhhcc-cchHHHHHHHHHHHHhhc---chhhhchhhhHHHHHHHhhhhhheeeecCC
Q 028952 78 GLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKL---DLRVQSSLAKSIGTMVSIAGALTVTLYKGP 153 (201)
Q Consensus 78 gl~~~~~~~~~~~gl~~~~a~~asil~~-~~Pv~~~l~a~~~~~E~~---~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~ 153 (201)
|++-...|..++.++++.+.+.+--+.. +.-+...++..++++|=- +.+ -...-.+|++++++|+++...-...
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7766889999999999999999888865 777888888888887642 211 2344688999999999887641110
Q ss_pred cccccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 028952 154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY 193 (201)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~ 193 (201)
. + +. +.++..++.+..+|.++++.|.+.+++|.
T Consensus 158 k-~--~~----~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 158 K-E--RK----MGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred c-c--cc----cccccccccchHhHHHHHHHHHHHHHHHH
Confidence 0 0 00 00000233567899999999999999998
No 50
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.25 E-value=0.011 Score=49.48 Aligned_cols=128 Identities=9% Similarity=-0.013 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028952 11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLISCCVQTCLY 89 (201)
Q Consensus 11 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~gl~~~~~~~~~~ 89 (201)
+.-++.||.+...=|.. ++|+.+-.+.-...-... -+.+..+.+...+ ...-+.+.+..+...|.+..++-.++.
T Consensus 154 l~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~-al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~ 229 (293)
T COG2962 154 LALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPV-ALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFA 229 (293)
T ss_pred HHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHH-HHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHH
Confidence 45567888888887764 378888777777765555 4443333332221 012356677888889998899999999
Q ss_pred HhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 90 VGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 90 ~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
.|.+.++-+..+++.+.+|....+++.++++|++ +..|..+-++.-.|.++..
T Consensus 230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~------~~~~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPF------DSDQLVTFAFIWLALALFS 282 (293)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999995 5566777777777776543
No 51
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.24 E-value=0.011 Score=49.87 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHH-HHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHH
Q 028952 34 DFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSIIC-KIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAF 110 (201)
Q Consensus 34 p~~~~~~R~~~a~i~~l~~~~~~~~~~~~--~~~~~~~~~~-~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~ 110 (201)
|+..+...++.=..+ -.......+++.. +...+|++.. ++.-.|+..++-..+.+++++|++.+.-+..=+..++|
T Consensus 45 PLf~ts~h~~v~flf-a~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~F 123 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLF-AALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILF 123 (349)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHH
Confidence 888888777665544 3322222222211 1245666544 55566666678888999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHHHHHHHHHHHHH
Q 028952 111 TFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL 189 (201)
Q Consensus 111 ~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~ 189 (201)
+.+++.++.-||.+| .-..-+.+..+|+.+.+ .+++. -...|..++..|+++-
T Consensus 124 IllFs~if~lEk~~w------~L~l~v~lI~~Glflft-~KsTq-------------------f~i~Gf~lv~~aS~~s 176 (349)
T KOG1443|consen 124 ILLFSLIFKLEKFRW------ALVLIVLLIAVGLFLFT-YKSTQ-------------------FNIEGFFLVLAASLLS 176 (349)
T ss_pred HHHHHHHHHhHHHHH------HHHHHHHHHhhheeEEE-ecccc-------------------eeehhHHHHHHHHHhh
Confidence 999999999999543 34455555566666554 44331 2356777777776653
No 52
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.052 Score=45.99 Aligned_cols=151 Identities=13% Similarity=0.039 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 028952 19 GSSTLNKAAMNKGTSDFVLIV--YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSS 96 (201)
Q Consensus 19 ~~~~~~k~~~~~~~~p~~~~~--~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~ 96 (201)
...++.|.++.+.=-|..+.. ++++...+. +...-. .|--+.+..+++..+..+-..++-.+....-..+++|.+
T Consensus 26 lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~-v~~lk~--~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~ln 102 (314)
T KOG1444|consen 26 LMTVVNKIVLSSYNFPMGLLLMLLQSLASVLV-VLVLKR--LGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLN 102 (314)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHH--hceeecCCcChHHHHHHccHHHHHHHHHHHccccccccC
Confidence 344566777765212444444 787777666 443221 121112456788877777777776666667778999999
Q ss_pred cchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchH
Q 028952 97 PTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWI 176 (201)
Q Consensus 97 a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (201)
...-+++=+..|+++++.-..+++.+ +++.-+.++....+|.......+. .-..
T Consensus 103 Vpm~tv~kn~tii~~ai~E~lf~~~~------~~~~v~~Sv~~m~~~s~~~~~~d~--------------------sf~~ 156 (314)
T KOG1444|consen 103 VPMFTVFKNLTIILTAIGEVLFFGKR------PSNKVWASVFAMIIGSVAAAFTDL--------------------SFNL 156 (314)
T ss_pred chHHHHHhhchHHHHHHhHHhhcCcC------chhhHHHHHHHHHHHHHhhccccc--------------------eecc
Confidence 99999999999999999999999866 677778888888888876553221 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028952 177 IGGLVLAAGSFFLSLLYIVQLD 198 (201)
Q Consensus 177 ~G~~~~l~aa~~~a~~~il~~~ 198 (201)
.|-.+.+...++-+.+.+..|+
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk 178 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKK 178 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999988776
No 53
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.17 E-value=0.0062 Score=52.63 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHH
Q 028952 3 SVGVTAVMVAVECLEVGSSTLNKAAMNK---GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSIICKIFGL 77 (201)
Q Consensus 3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~---~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (201)
...+.++.+.+++.||.+.++.|.-.++ ..|--.+..+-.++..++ ++|...+...-.. ..-.+..+...++..
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnlll-lwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLL-LWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH-HhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 3567889999999999999999987643 256666667777777777 8876655333221 112234444567788
Q ss_pred HHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeec
Q 028952 78 GLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (201)
Q Consensus 78 gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~ 151 (201)
++++ ++.-++|.+|.-.++|-.+++=+.+.-..+++...++.+.+ ++...++|....+.|-+.+...+
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~------~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKH------PSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHhheeccc
Confidence 9999 99999999999999999988888755446667677665556 88999999999999998887544
No 54
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.05 E-value=0.0023 Score=54.57 Aligned_cols=137 Identities=14% Similarity=0.169 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHHHHH-HHHHHHhhcCC---CC-CCCHHHHHHHH
Q 028952 4 VGVTAVMVAVECLEVGSSTLNKAAM---NKGTSDFVLIVYSNAFAAIFILL-PSTFIYYRNRT---RP-PLTVSIICKIF 75 (201)
Q Consensus 4 ~~~~l~l~~~~~~wg~~~~~~k~~~---~~~~~p~~~~~~R~~~a~i~~l~-~~~~~~~~~~~---~~-~~~~~~~~~~~ 75 (201)
..+.+...++.+..+...++.|..+ ++.+|+..+..+.--++.+. ++ |+....+.... .. ..+... ....
T Consensus 162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~-Ll~P~~~~~~~~~~~~~~~~~~~~~~-~~~~ 239 (316)
T KOG1441|consen 162 LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIF-LLIPFLDYVEGNKFVGFLTAPWFVTF-LILL 239 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHH-HhcchHhhhcccceeeeeccccchhh-HHHH
Confidence 4578888999999999999999998 33589999999999999998 88 88766443221 11 223333 3334
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 76 GLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 76 ~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
+.+++..+.|...|+.+++++|-.-++....==.++...++++++|++ +..+.+|..+++.|+.+-.
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pv------t~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPV------TFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCC------chhhHHHHHHHHHHHHHHH
Confidence 444544888899999999999988888876655556667788888895 5667899999999998754
No 55
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.04 E-value=0.027 Score=48.67 Aligned_cols=145 Identities=14% Similarity=0.025 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHHHhhc-CCC-CCC----C
Q 028952 4 VGVTAVMVAVECLEVGSS-------TLNKAAMNKGTSDFVLIVYSNA---FAAIFILLPSTFIYYRN-RTR-PPL----T 67 (201)
Q Consensus 4 ~~~~l~l~~~~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~i~~l~~~~~~~~~~-~~~-~~~----~ 67 (201)
.|+.+.++++.+.++.+. +..+.+.+.|.+|.....-.+. ++..+.-..+..+..++ +.. ... +
T Consensus 173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~ 252 (345)
T PRK13499 173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA 252 (345)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence 578899999999999988 7777765667888876666665 44444122222321111 110 011 2
Q ss_pred HHH-HHHH---HHHHHHHHHHHHHHHHhhcccCcchhhh---hc-ccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHH
Q 028952 68 VSI-ICKI---FGLGLISCCVQTCLYVGIGYSSPTLSSA---IV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV 139 (201)
Q Consensus 68 ~~~-~~~~---~~~gl~~~~~~~~~~~gl~~~~a~~asi---l~-~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l 139 (201)
++. ++.. .+.|++-...+.+|..|-+..+.+.+.+ +. .+..++..+.+. ++||+=+-.++.-+..++|+++
T Consensus 253 ~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vl 331 (345)
T PRK13499 253 KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVV 331 (345)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHH
Confidence 111 2332 3334333677888999998887666655 66 555577788777 5899854222245777899999
Q ss_pred Hhhhhhheee
Q 028952 140 SIAGALTVTL 149 (201)
Q Consensus 140 ~~~Gv~ll~~ 149 (201)
.+.|.+++..
T Consensus 332 iI~g~~lig~ 341 (345)
T PRK13499 332 IILAANIVGL 341 (345)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 56
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.00 E-value=0.014 Score=48.83 Aligned_cols=161 Identities=13% Similarity=0.154 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHh---cCCC----hHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------------CCCCHHHHHHHHH
Q 028952 18 VGSSTLNKAAMN---KGTS----DFVLIVYSNAFAAIFILLPSTFIYYRNRTR--------------PPLTVSIICKIFG 76 (201)
Q Consensus 18 g~~~~~~k~~~~---~~~~----p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 76 (201)
..|.+.+|-+-+ +|.| |+..+..-|+.=..+ +..+.+++.|...+ ++.+. + ++.
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflC-l~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p---~-lfl 90 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLC-LAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP---V-LFL 90 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCcccccccccccccCCCCc---c-eec
Confidence 467777786642 2222 555555555555566 66655554332110 01122 1 122
Q ss_pred HHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcc
Q 028952 77 LGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL 155 (201)
Q Consensus 77 ~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~ 155 (201)
.=.++ .....+++.|+.+|+|+.--.+-...-+|+.+++.-+++.++ +.+||+|+.....|++.+...+-. .
T Consensus 91 ~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti------~~~qWl~i~fv~lGlviVg~~d~~-~ 163 (372)
T KOG3912|consen 91 PPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTI------TGRQWLGILFVSLGLVIVGSLDVH-L 163 (372)
T ss_pred ChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhccc------chhhHHHHHHHHhhhheeeeeecc-c
Confidence 23344 777888899999999998888888888999999999999995 555679999999999887644210 0
Q ss_pred cccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 156 VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
. + ++..+..+...||++.+.+-+--|.-.+.-+|.
T Consensus 164 ~--~-------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~ 198 (372)
T KOG3912|consen 164 V--T-------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQ 198 (372)
T ss_pred c--c-------CCccccccchhhhHHHHHHHHHHHHHHHHHHhh
Confidence 0 0 011223566899999999988888777665543
No 57
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.99 E-value=0.0024 Score=46.35 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 028952 11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLY 89 (201)
Q Consensus 11 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~-~~~~~~~~ 89 (201)
++++++||...++.|.+.+. .++..-.. |..- -.. .+ . + +++- . ..+.- -.....|+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~-~~~-~L----l--~-------n~~y---~--ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQ-EIK-FL----L--L-------NPKY---I--IPFLLNQSGSVLFF 59 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHH-HHH-HH----H--H-------hHHH---H--HHHHHHHHHHHHHH
Confidence 45689999999999998754 66554442 4222 222 11 0 1 1221 1 22222 56677888
Q ss_pred HhhcccCcchhhhhc-ccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952 90 VGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (201)
Q Consensus 90 ~gl~~~~a~~asil~-~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l 146 (201)
..+...+-+.+.-+. .+.=+++.+.++++.+|. .+++.++|+.+.+.|+.+
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~------~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEV------ISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcc------cchhHHHHHHHHHcCeee
Confidence 999999999999997 477788888887766666 456678999999999865
No 58
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.66 E-value=0.0012 Score=54.77 Aligned_cols=133 Identities=10% Similarity=0.062 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 85 (201)
+....+.+.+.-+..+++.|..-+ ..+......+=.+++.+. .+.......... ....+|++..+..+|++|.+.|
T Consensus 192 gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~-s~I~~~~ig~~~--lP~cgkdr~l~~~lGvfgfigQ 267 (346)
T KOG4510|consen 192 GTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVV-SLIGCASIGAVQ--LPHCGKDRWLFVNLGVFGFIGQ 267 (346)
T ss_pred chHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHH-HHHHHhhcccee--cCccccceEEEEEehhhhhHHH
Confidence 344555566666677777776533 366666566655665555 333222112222 2345777788888999999999
Q ss_pred HHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 86 ~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
.+...|+|.-.|+..++..++--+++.+.-+++++|- |+...+.|.++.+...+...
T Consensus 268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~------Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHW------PTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCC------ChHHHhhceeeeehhHHHHH
Confidence 9999999999999999999999999999999999998 66666788877776665544
No 59
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.53 E-value=0.084 Score=39.63 Aligned_cols=132 Identities=16% Similarity=0.102 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028952 7 TAVMVAVECLEVGSSTLNKAAMNKGT-SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (201)
Q Consensus 7 ~l~l~~~~~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 85 (201)
.+..+.+.++-+....+.-..-+. . +|+.-++.-+..+.+. +..+....+++.. +..+... .+...-|++|...-
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~-~~i~~~~~~~~~~-~~~~~~p-~w~~lGG~lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFIL-LLIILLITGRPSL-ASLSSVP-WWAYLGGLLGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHH-HHHHHHHhccccc-chhccCC-hHHhccHHHHHHHH
Confidence 344555555555555554444333 4 4999999999999998 7776665443211 1111111 23344677777777
Q ss_pred HHHHHhhcccCcchhhhhcccchH-HHHHHHHH--HHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952 86 TCLYVGIGYSSPTLSSAIVDLTPA-FTFILALI--SRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (201)
Q Consensus 86 ~~~~~gl~~~~a~~asil~~~~Pv-~~~l~a~~--~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l 146 (201)
.......+..+++.+..+.-..=+ ...++..+ +..|| +..+..|++|+.+.++|+.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPK----RPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCC----CCCCHHHHHHHHHHHHHHhC
Confidence 788889999999988887654333 33444442 22233 22678889999999999863
No 60
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.40 E-value=0.012 Score=43.14 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=53.7
Q ss_pred HHHHH-HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952 77 LGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (201)
Q Consensus 77 ~gl~~-~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~ 149 (201)
..+.+ .+++.++..++++.+.+.+=.+ ....-+.+.+.++++++|+ .+..|++|+.+.++|++.+..
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~------~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDES------LSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHhhc
Confidence 34444 7888899999999998877555 3467778889999999999 456678999999999988753
No 61
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.36 E-value=0.097 Score=37.74 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhe
Q 028952 82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll 147 (201)
.+++.+...++|++|.+.+=-+ ...--+.+.+.++++++|+ ++..|++|+.+.+.|++.+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~------~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQR------LNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHHHh
Confidence 6777888889999988776433 3466677888899999999 5667789999999999865
No 62
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.18 E-value=0.014 Score=49.43 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=61.2
Q ss_pred HHHHHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952 73 KIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (201)
Q Consensus 73 ~~~~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~ 149 (201)
...+.|+.. .+.....+.++.+.|++..+-+..+.-++..+++..+++|| .+++.+.|..+++.|..++..
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~------~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEK------LTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhccc------chHhHHhhHHHHHhhheeeEE
Confidence 345666666 77778889999999999999999999999999999999999 567778999999999987754
No 63
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.17 E-value=0.018 Score=41.62 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=50.4
Q ss_pred HHHH-HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 78 GLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 78 gl~~-~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
.+.+ .+++.++..++++.|.+.+=-+ ....-+.+.+.++++++|+ .+..|++|+.+.++|++.+.
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~------~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR------LDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHh
Confidence 3444 6777778888888887776444 3456667788999999999 56667899999999999875
No 64
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.96 E-value=0.03 Score=40.08 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=50.8
Q ss_pred HHH-HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 79 LIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 79 l~~-~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
+.+ ..++.+...++|++|.+.+=.+ ...--+.+.+.++++++|+ .+..|++|+.+.+.|++.+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~------~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGES------ASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHhhh
Confidence 344 6778888899999988776444 4466777889999999999 45667899999999998764
No 65
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.95 E-value=0.00098 Score=54.49 Aligned_cols=169 Identities=12% Similarity=0.005 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 85 (201)
.++..++-++.||+...+.... |=+|.+=+.---+.|.++ -+.++++ .+ +..+.+.+.--++.|++-...|
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALif-aiiv~~~-~~----p~~T~~~~iv~~isG~~Ws~GQ 73 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIF-AIIVFLF-VS----PELTLTIFIVGFISGAFWSFGQ 73 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHH-HHHHhee-ec----CccchhhHHHHHHhhhHhhhhh
Confidence 4567788899999987765432 345665554444444444 3333333 22 4556666565556666658889
Q ss_pred HHHHHhhcccCcchhhhhcc-cchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccc
Q 028952 86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL 164 (201)
Q Consensus 86 ~~~~~gl~~~~a~~asil~~-~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 164 (201)
..++.++++.+.+++.-+.+ +.-+-+.+++++.++|-=+.-+. ..-.+++++.+.|+++-+..+..+.
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~~~~~nk--------- 142 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSKQDRNNK--------- 142 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeeeeccccc---------
Confidence 99999999999999999987 56667788899999987332111 1223456677778766543222110
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 028952 165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQL 197 (201)
Q Consensus 165 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~ 197 (201)
+.++..+.-.|...++.|++.|-.|.++..
T Consensus 143 ---~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~ 172 (288)
T COG4975 143 ---EEENPSNLKKGIVILLISTLGYVGYVVLFQ 172 (288)
T ss_pred ---cccChHhhhhheeeeeeeccceeeeEeeec
Confidence 012334567788888888888887776543
No 66
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.89 E-value=0.029 Score=40.17 Aligned_cols=61 Identities=16% Similarity=0.109 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhcccCcchhh-hhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 82 CCVQTCLYVGIGYSSPTLSS-AIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~as-il~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
..++.+...++|++|.+.|= +-...--+.+.+.++++++|++ +..|++|+.+.++|++.+.
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l------~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESL------SLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcC------CHHHHHHHHHHHHHHHHhh
Confidence 67788888999999987763 3345677778899999999994 6667899999999998764
No 67
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.039 Score=46.09 Aligned_cols=145 Identities=14% Similarity=0.081 Sum_probs=89.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhc----CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccc
Q 028952 33 SDFVLIVYSNAFAAIFILLPSTFIYYRN----RTR-PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLT 107 (201)
Q Consensus 33 ~p~~~~~~R~~~a~i~~l~~~~~~~~~~----~~~-~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~ 107 (201)
.|...+.++.+....+ .+.+.....+- ..+ ..++.+..+.+.-+.+.-.+...+-+..++|.+.+.--+=-.+.
T Consensus 60 ~plf~t~~qcLvt~~~-c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLt 138 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSI-CLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLT 138 (347)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchh
Confidence 3888888988887776 66554332221 111 12455554544444443333334556788888776555555677
Q ss_pred hHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHHHHHHHHHHH
Q 028952 108 PAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSF 187 (201)
Q Consensus 108 Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~ 187 (201)
-+|+.++.++++|+| -+..-..+-.+.+.| +.-|.+- ++..+.-.+.|.++.++|++
T Consensus 139 tvFtVlLtyvllkqk------Ts~~~~~~C~lIi~G-----F~lGvdq------------E~~~~~ls~~GvifGVlaSl 195 (347)
T KOG1442|consen 139 TVFTVLLTYVLLKQK------TSFFALGCCLLIILG-----FGLGVDQ------------EGSTGTLSWIGVIFGVLASL 195 (347)
T ss_pred hhHHHHhHHhhcccc------cccccceeehhheeh-----heecccc------------ccccCccchhhhHHHHHHHH
Confidence 789999999999999 232223333333333 3323211 12334557899999999999
Q ss_pred HHHHHHHHHhhccC
Q 028952 188 FLSLLYIVQLDLNY 201 (201)
Q Consensus 188 ~~a~~~il~~~~~~ 201 (201)
+-|...+..||.+|
T Consensus 196 ~vAlnaiytkk~l~ 209 (347)
T KOG1442|consen 196 AVALNAIYTKKVLP 209 (347)
T ss_pred HHHHHHHhhheecc
Confidence 99999999998765
No 68
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.67 E-value=0.045 Score=44.78 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCC
Q 028952 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 161 (201)
.+++...+.++||.+=....+=-+.-|+=++++++++.+++ .+++|...++..+.|+++.....+...
T Consensus 96 LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~Ks------Y~w~kY~cVL~IV~GValFmYK~~Kv~------ 163 (337)
T KOG1580|consen 96 LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKS------YHWRKYCCVLMIVVGVALFMYKENKVG------ 163 (337)
T ss_pred HHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhccc------ccHHHHHHHHHHHHHHHHhhccccccC------
Confidence 67778889999999877777777888999999999999999 677788999999999987654322211
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 028952 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLD 198 (201)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~ 198 (201)
+.++.....|.+++++|--.=+..-..|.+
T Consensus 164 -------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdr 193 (337)
T KOG1580|consen 164 -------GAEDKTFGFGELLLILSLAMDGLTGSIQDR 193 (337)
T ss_pred -------CCcccccchHHHHHHHHHHhcccchhHHHH
Confidence 234455678888888876554444444443
No 69
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.55 E-value=0.037 Score=38.61 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcccCcchh-hhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHH
Q 028952 82 CCVQTCLYVGIGYSSPTLS-SAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV 139 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~a-sil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l 139 (201)
.....++..++++.+.+.+ ++......+.+.+.+..+++|++| ..|++|+.+
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s------~~~~~gi~l 92 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLS------LSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCC------HHHHhheee
Confidence 6778899999999999988 445568889999999999999955 455677764
No 70
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=0.52 Score=35.91 Aligned_cols=143 Identities=13% Similarity=0.034 Sum_probs=77.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 028952 1 MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI 80 (201)
Q Consensus 1 ~~~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 80 (201)
|......+..+.+.++-.....+.-..-+..-+|+.-.+..+..+.++ +..+....++... .....+.-.+.++-|++
T Consensus 1 ~~~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~-L~~l~l~~~~~~~-~a~~~~~pwW~~~GG~l 78 (150)
T COG3238 1 MMMYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVL-LLILLLIKQGHPG-LAAVASAPWWAWIGGLL 78 (150)
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHhcCCCc-hhhccCCchHHHHccch
Confidence 344455566666666666555554444343235999999999999988 7776666222211 11111111234445666
Q ss_pred HHHHHHHHHHhhcccCcchhhhhcccch-HHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhe
Q 028952 81 SCCVQTCLYVGIGYSSPTLSSAIVDLTP-AFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (201)
Q Consensus 81 ~~~~~~~~~~gl~~~~a~~asil~~~~P-v~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll 147 (201)
|...-..-.......+++.+..+.-..= +...++.. +.--..+ ++.++..+.+|+++.++|++++
T Consensus 79 Ga~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~-fG~~g~~-~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 79 GAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDH-FGWFGVP-KRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHh-hcccCCC-cCCCCHHHHHHHHHHHHHHHHh
Confidence 5444444455666666665555433222 22223222 1111111 2337889999999999996554
No 71
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=0.49 Score=40.20 Aligned_cols=137 Identities=14% Similarity=0.107 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCCCHHHHHHHHHHH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNR-----TRPPLTVSIICKIFGLG 78 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g 78 (201)
.+|..+....+.=+...+..|...+. +.+-+++.++-.+++... +....++.+... .....+...+..+.+.+
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~-l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP-LLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH-HHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 46777778888888888888887764 577888999999998877 655554433211 00112334456666777
Q ss_pred HHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 79 l~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
+++.+-+++-++..+..++...++.....-..+.+...++++++ .++...+|+.+++.|-+.-.
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~------~~~~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKP------FTFLNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCce------echhhhHHHHHHhhhhhHHh
Confidence 77777777888999999998888887555555666666677777 56778899999999987654
No 72
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.85 E-value=0.46 Score=40.25 Aligned_cols=133 Identities=13% Similarity=0.097 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----CCCCHHHHHHHHHHH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR-----PPLTVSIICKIFGLG 78 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g 78 (201)
.+++++....++=|......+...+. ++++.++.+.-.++.++. -... .+ .+.... .+..++.++-+++.+
T Consensus 172 ~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~-~~~~-li-~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 172 IGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAIL-NGTY-LI-LQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred HhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHH-HHHh-hh-cCCCCchHHHHHHcChhHHHHHHHHH
Confidence 45666666666666666666555553 688999999999998887 5544 22 222211 123456677788888
Q ss_pred HHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952 79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (201)
Q Consensus 79 l~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l 146 (201)
..+++.|.+-+.-++.-++-.-+.+..+-=++..+++.+.++.++ ++.|++|+++.+.|..+
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~------s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPL------SSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCcc------chhhccCeeeehHHHHH
Confidence 888899999999999999988888888888999999999999994 66677889988888764
No 73
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=93.60 E-value=0.61 Score=39.13 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhh
Q 028952 64 PPLTVSIICKIFGLGLISCCVQTCLYVGIGYS-SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIA 142 (201)
Q Consensus 64 ~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~-~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~ 142 (201)
++.+.|++...... + +..+..-+.++++- +-..=-++-+-.++-.+++++++.+.| .+.+|+.++++.-+
T Consensus 60 ~kiplk~Y~i~V~m--F-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~------Ys~~Qy~Sv~~iTi 130 (330)
T KOG1583|consen 60 PKIPLKDYAITVAM--F-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKR------YSLRQYSSVLMITI 130 (330)
T ss_pred CCCchhhhheehhe--e-eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccce------eehhhhhhHHhhhh
Confidence 45566665433222 2 33444446777774 434444555678889999999999999 88999999999999
Q ss_pred hhhheeeecCCcccccCCCccc-cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 028952 143 GALTVTLYKGPALVSMSSSSNL-HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLD 198 (201)
Q Consensus 143 Gv~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~ 198 (201)
|+++-+..++++.+..+ .+. ++++..+...+.+|..++..+-+.-|.--+.|+.
T Consensus 131 GiiIcTl~s~~d~~~~~--~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~ 185 (330)
T KOG1583|consen 131 GIIICTLFSSKDGRSKL--SGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQET 185 (330)
T ss_pred hheeEEeecCcchhhhh--cccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887766555433210 111 1222334456789999988888887777776654
No 74
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.44 E-value=0.25 Score=40.52 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952 69 SIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (201)
Q Consensus 69 ~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l 146 (201)
..+..+..+++.+.+.|.+.+.-+++-+|-.-|++..+--.|+.+.++++++.++ +.+||+|.++.+.|...
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npl------s~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPL------SGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHhhh
Confidence 3445566677767889999999999999999999999999999999999999994 56678999999998743
No 75
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=93.33 E-value=0.51 Score=37.76 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhh
Q 028952 81 SCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL 145 (201)
Q Consensus 81 ~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ 145 (201)
+...+.+..+-++|.++..-++...+.++++.+++.++++|+ ++..+++|..+.+.|+.
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~------ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAK------ISSTFYLGAILVFLATF 220 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHeeeE
Confidence 356667788899999999999999999999999999999999 67777899999998875
No 76
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.23 E-value=0.0097 Score=48.80 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028952 8 AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC 87 (201)
Q Consensus 8 l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~ 87 (201)
..++.+.+.|-.+.+..+.-.-+|.+..---+.-+.++++. +. .++.. ++.++..++++ ..|++-...+.+
T Consensus 155 ~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali-~~------~~~~~-~~~~K~t~~ni-i~G~~Wa~GNl~ 225 (288)
T COG4975 155 VILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALI-LG------FFKME-KRFNKYTWLNI-IPGLIWAIGNLF 225 (288)
T ss_pred eeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHH-Hh------hcccc-cchHHHHHHHH-hhHHHHHhhHHH
Confidence 33334444444444444432212344444444555555554 22 11212 34456665554 567666788889
Q ss_pred HHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952 88 LYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (201)
Q Consensus 88 ~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~ 149 (201)
++.+-+..+.+.+=.++.+..+...+-+.++++||=|.|.+ ...+.|+++.+.|++++..
T Consensus 226 ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 226 MLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhhe
Confidence 99999988888888888888899999999999999443332 2345677788888776653
No 77
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=0.095 Score=44.59 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=59.8
Q ss_pred HHHHHHHHH-HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 73 KIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 73 ~~~~~gl~~-~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
+..+.|++- .+....-|.+.-+.|++..+-+.++.-++.++++..++|||+ +..-.+|.++|++|..++.
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl------~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKL------NLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHH------HHhhhhheeEEecccEEEE
Confidence 455677777 777777788889999999999999999999999999999995 4556799999999988776
No 78
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.28 E-value=5.7 Score=33.80 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=84.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcc--cchHH
Q 028952 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD--LTPAF 110 (201)
Q Consensus 33 ~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~--~~Pv~ 110 (201)
+|..+.+.+-+.+.++ -.. ....++.. ....+.|......++.+.+...+.+.+++|.+=..-.+-=+ +.|
T Consensus 50 ~~~fL~~~q~l~~~~~-s~~--~l~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIP-- 122 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLV-SYA--MLKWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIP-- 122 (327)
T ss_pred ccHHHHHHHHHHHHHH-HHH--HHhccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhH--
Confidence 5777788777777766 433 23223222 11233345566777777888899999999997433332222 455
Q ss_pred HHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 028952 111 TFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLS 190 (201)
Q Consensus 111 ~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a 190 (201)
+++++.++.+.| .+..+.+...+.-.|+.+....+..+ .+. .....+..+|..++...-+.=+
T Consensus 123 Vmlmg~Lvy~~k------y~~~eYl~~~LIs~GvsiF~l~~~s~-s~~----------~~g~~ns~~G~~Ll~~~L~fDg 185 (327)
T KOG1581|consen 123 VMLMGTLVYGRK------YSSFEYLVAFLISLGVSIFSLFPNSD-SSS----------KSGRENSPIGILLLFGYLLFDG 185 (327)
T ss_pred HHHHHHHHhcCc------cCcHHHHHHHHHHhheeeEEEecCCC-Ccc----------ccCCCCchHhHHHHHHHHHHHh
Confidence 566778888888 56677888888888887665543221 000 1122356777777766555444
Q ss_pred HHHHHHhh
Q 028952 191 LLYIVQLD 198 (201)
Q Consensus 191 ~~~il~~~ 198 (201)
+.--.|.+
T Consensus 186 fTn~tQd~ 193 (327)
T KOG1581|consen 186 FTNATQDS 193 (327)
T ss_pred hHHhHHHH
Confidence 44434433
No 79
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=91.22 E-value=6.3 Score=33.66 Aligned_cols=135 Identities=19% Similarity=0.162 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------CC----CCHHHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNKG----TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR------PP----LTVSII 71 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~~----~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~------~~----~~~~~~ 71 (201)
+......+.++=|.-+.+++..++++ -+|.+....-.-...+. ++|.....|..... .. .-.+..
T Consensus 165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~-Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~ 243 (349)
T KOG1443|consen 165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIG-LLPLSLLFEGLHLITSSSIFRFQDTGLILRVI 243 (349)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHH-HHHHHHHHcccccchhhhHHHhcCccHHHHHH
Confidence 55666677777777777777777542 24777776666666777 77776665643210 00 113333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhe
Q 028952 72 CKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (201)
Q Consensus 72 ~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll 147 (201)
..+...|...++--...+.=++.|+.-..++..-.-=+.+.++|.++.+|++ +-..+.|..+|..|+..=
T Consensus 244 g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~l------s~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 244 GLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQL------SLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcch------hhhHHHHHHHHHHHHHHh
Confidence 4444444444333344455566666655555555566788899999999995 566789999999999764
No 80
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=89.99 E-value=2.4 Score=35.21 Aligned_cols=176 Identities=10% Similarity=-0.000 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028952 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT 86 (201)
Q Consensus 7 ~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~ 86 (201)
++..+++.+++|++++-.|.. +. -|++.+-.+-.....+. -+..... +. . ++... .-.+-|.+-...+.
T Consensus 2 ~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~-g~~v~~~--~~-~-p~f~p----~amlgG~lW~~gN~ 70 (254)
T PF07857_consen 2 YIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLV-GLVVNLI--LG-F-PPFYP----WAMLGGALWATGNI 70 (254)
T ss_pred chhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHH-HHHHHHh--cC-C-Cccee----HHHhhhhhhhcCce
Confidence 567889999999999999974 44 57766555544433333 2222222 21 1 22221 11222333345555
Q ss_pred HHHHhhcccCcchhhhhccc-chHHHHHHHHH-HHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCccccc---CCC
Q 028952 87 CLYVGIGYSSPTLSSAIVDL-TPAFTFILALI-SRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM---SSS 161 (201)
Q Consensus 87 ~~~~gl~~~~a~~asil~~~-~Pv~~~l~a~~-~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~---~~~ 161 (201)
+-.-.++..+-+.+-.+-+. .-+.....+.+ +++++-+.-. ......+|++++++|..+..+-+.+.-.+. +.+
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~ 149 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEET 149 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecCCCCCcccccccc
Confidence 55667777777777666554 33333333332 2333222111 367889999999999988776554331111 110
Q ss_pred c-------cccCC------CCCCC-----CchHHHHHHHHHHHHHHHHHHH
Q 028952 162 S-------NLHNE------LRSPQ-----KNWIIGGLVLAAGSFFLSLLYI 194 (201)
Q Consensus 162 ~-------~~~~~------~~~~~-----~~~~~G~~~~l~aa~~~a~~~i 194 (201)
+ +.+++ ++..+ .+...|..+++.+.+.|+...+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fv 200 (254)
T PF07857_consen 150 PLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFV 200 (254)
T ss_pred ccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccc
Confidence 0 00011 01111 2478999999999999987543
No 81
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.72 E-value=12 Score=31.70 Aligned_cols=136 Identities=11% Similarity=0.129 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHH----HHHHHhh-cCC-CCCCCHHHHHH----
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAM-NKGTSDFVLIVYSNAFAAIFILLP----STFIYYR-NRT-RPPLTVSIICK---- 73 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~-~~~~~p~~~~~~R~~~a~i~~l~~----~~~~~~~-~~~-~~~~~~~~~~~---- 73 (201)
.+.++++++.++-+.-++.=..-+ ..+.+|.+.+.+..+++.++ +.. +.++... ... .++-.+.+|..
T Consensus 176 tGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~-~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~ 254 (372)
T KOG3912|consen 176 TGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVI-LSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAA 254 (372)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHH-HHHHHHHHhheecCCcCcCCCCcchhhHHHHHHH
Confidence 367888999999999888764444 44789999999999998554 333 3332111 110 02222334331
Q ss_pred -----HHHHHHHH-HHHHHHHH-Hh---hcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhh
Q 028952 74 -----IFGLGLIS-CCVQTCLY-VG---IGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAG 143 (201)
Q Consensus 74 -----~~~~gl~~-~~~~~~~~-~g---l~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~G 143 (201)
.+...+.+ .....+++ .| -++.++++=.++-..-..+..+++.....|+ ....|+.|-++...|
T Consensus 255 ~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~------f~llqilGFliLi~G 328 (372)
T KOG3912|consen 255 LQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEY------FHLLQILGFLILIMG 328 (372)
T ss_pred hcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 22233333 23222222 23 3455777777777777778888888899999 577889999999999
Q ss_pred hhhe
Q 028952 144 ALTV 147 (201)
Q Consensus 144 v~ll 147 (201)
.++-
T Consensus 329 i~lY 332 (372)
T KOG3912|consen 329 IILY 332 (372)
T ss_pred HHHH
Confidence 8764
No 82
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=87.40 E-value=3.6 Score=33.70 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 18 VGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR---PPLTVSIICKIFGLGLISCCVQTCLYVGIG 93 (201)
Q Consensus 18 g~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~ 93 (201)
+..-...|...+. +....+-.++..+++..+ ++.+....+.+... ...+...+..+++.|+..+...++--|.++
T Consensus 168 aafVL~mrkri~ltNf~d~dtmfYnNllslPi-L~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvr 246 (309)
T COG5070 168 AAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPI-LLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVR 246 (309)
T ss_pred HHHHHHHHHhhcccccchhhHHHHhhhHHHHH-HHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEe
Confidence 3334444544432 356788999999999998 88877776654320 112333445677777766666677778888
Q ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 94 ~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
-++++.-+..-.+.-.-..+.+.++++|++ ++.++..+++++...++-.
T Consensus 247 VtSSTtySMvGALNKlp~alaGlvffdap~------nf~si~sillGflsg~iYa 295 (309)
T COG5070 247 VTSSTTYSMVGALNKLPIALAGLVFFDAPV------NFLSIFSILLGFLSGAIYA 295 (309)
T ss_pred ehhhhHHHHHHHhhhChHHHhhhhhcCCch------hHHHHHHHHHHHHHHHHHH
Confidence 898888888888877778888899999994 5667888888887665544
No 83
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=86.80 E-value=13 Score=32.18 Aligned_cols=176 Identities=11% Similarity=0.039 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHHHhh-cCC---CCCCCHHHHHHHHHHHH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYR-NRT---RPPLTVSIICKIFGLGL 79 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~i~~l~~~~~~~~~-~~~---~~~~~~~~~~~~~~~gl 79 (201)
.+.+...++.++=|+.++-.|..-+ .+ ++... ...+++.+ ..|+..-.-. +.. ....+...+....+.|+
T Consensus 7 ~Gii~h~iGg~~~~sfy~P~kkvk~--Ws-WEs~Wlv~gi~swl--i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 7 LGIIFHAIGGFASGSFYVPFKKVKG--WS-WESYWLVQGIFSWL--IVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHhhhhccchhhcCC--cc-HHHHHHHHHHHHHH--HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 4667777888888888888887532 33 33333 34444443 4665443111 100 01234445566666777
Q ss_pred HHHHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHh--hcchhhhchhhhHHHHHHHhhhhhheeeecCCccc
Q 028952 80 ISCCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRME--KLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALV 156 (201)
Q Consensus 80 ~~~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E--~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~ 156 (201)
+-......|-.+++|++-+...-+ .-+.-++..++-.++.++ .+. .+.-....++|++++++|+++...-...
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~-~~~~g~~vL~Gv~v~LiGIai~g~AG~~--- 157 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELL-ATPSGQIVLLGVAVCLIGIAICGKAGSM--- 157 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccc-cCCCchhhhhHHHHHHHHHHHHhHHHHh---
Confidence 666677788889999886554333 234444444443333221 110 0113567899999999999987532111
Q ss_pred ccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 028952 157 SMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYI 194 (201)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~i 194 (201)
+++ ... ...++.+.-+|.++++.|.+.-|++-+
T Consensus 158 --Ke~--~~~-~~~~efn~~kGl~iAv~sGv~Sa~fn~ 190 (344)
T PF06379_consen 158 --KEK--ELG-EEAKEFNFKKGLIIAVLSGVMSACFNF 190 (344)
T ss_pred --hhh--hhc-cchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 000 000 112345678999999999887777654
No 84
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=73.65 E-value=4.1 Score=29.23 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028952 8 AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC 87 (201)
Q Consensus 8 l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~ 87 (201)
.-++.+...||...++.|..-. |.+...-.. |- +- .. .++-+. ...+++-+...+ ++-+...+
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~-~k----~~--~~---lqe~~t--l~l~w~Y~iPFl----lNqcgSal 68 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSS-RK----IM--IA---LQEMKT--LFLNWEYLIPFL----LNQCGSAL 68 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHh-hHhhccCch-HH----HH--HH---HHHHHH--HHHhHHHHHHHH----HHHhhHHH
Confidence 4567889999999999998743 343332111 00 00 00 011111 122343333222 22455677
Q ss_pred HHHhhcccCcchhhhhcc-cchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhe
Q 028952 88 LYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (201)
Q Consensus 88 ~~~gl~~~~a~~asil~~-~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll 147 (201)
|++-++.++-+.+.-+.+ +.-.|+.+.+..+. |+. +.++.++|..+.+.|+.+.
T Consensus 69 y~~tLa~a~islavpv~nsltfafta~~G~~LG-E~~-----~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 69 YYLTLASAPISLAVPVTNSLTFAFTAIFGKALG-EET-----QGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHhcCCceeeeeecchhHHHHHHHHHHHhc-ccc-----ccceeehhhhHHhhhhhhe
Confidence 888999999888887766 56668888887654 554 6788899999999998654
No 85
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=72.30 E-value=8.8 Score=32.11 Aligned_cols=134 Identities=12% Similarity=0.075 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 028952 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS- 81 (201)
Q Consensus 3 ~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~- 81 (201)
+.|+..++++++-++|.+.+.-....++ .|-.++...-.++++++ -..- .+.+|... ..+.|..-....+...++
T Consensus 164 p~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaII-saIQ-~i~~~~~~-~tl~w~~~i~~yl~f~L~M 239 (336)
T KOG2766|consen 164 PVKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAII-SAIQ-FIFERHHV-STLHWDSAIFLYLRFALTM 239 (336)
T ss_pred CccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHH-HHHH-Hhhhccce-eeEeehHHHHHHHHHHHHH
Confidence 3456667777888889888888877665 89999999999999987 6655 44455433 233332111111223333
Q ss_pred HHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
++-+.+.-.-++..+++.-.+-.-+.-.+..++ ..++-++ ++.-.++-.....|.++-.
T Consensus 240 FllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv------~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 240 FLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHV------DWLYFLAFATIATGLIIYS 298 (336)
T ss_pred HHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcch------hhhhHHHHHHHHHhhEEee
Confidence 555556666677777665444444555566555 3445555 4556788888888987653
No 86
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=71.46 E-value=27 Score=29.58 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=78.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhc--CC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcccc
Q 028952 32 TSDFVLIVYSNAFAAIFILLPSTFIYYRN--RT--RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLT 107 (201)
Q Consensus 32 ~~p~~~~~~R~~~a~i~~l~~~~~~~~~~--~~--~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~~~~a~~asil~~~~ 107 (201)
-+..+..++...++.++ ++......+.- .+ ..+.++|.....++.++.+.+.+.+-..-++.-+|..++.+...-
T Consensus 218 ~ss~EmvfySy~iG~vf-lf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVF-LFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCcceEEEeeecccHHH-HHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 34567788888888887 44433331110 01 123456777777777877766666666667777888888888888
Q ss_pred hHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeec
Q 028952 108 PAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (201)
Q Consensus 108 Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~ 151 (201)
-..+.+++.+++.++++. ...-|.++.+.|+++=...+
T Consensus 297 KavTi~lSfllFsKPfT~------qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTE------QYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHHHHHHHHHHHcCchHH------HHhhhhHHHHHHHHhhcccC
Confidence 889999999999999654 44678889999988754443
No 87
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=68.91 E-value=63 Score=26.43 Aligned_cols=114 Identities=9% Similarity=-0.007 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHHHHHHHHHHHHhhcCCC-----CCCCHHHHHHHHHHH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSN-AFAAIFILLPSTFIYYRNRTR-----PPLTVSIICKIFGLG 78 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~-~~a~i~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g 78 (201)
.+.+.+++++++=|...+.....++++-.|+..--.+. ..+.++ .++.....+..+.. ...++..|..++.-
T Consensus 114 ~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~-~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~- 191 (244)
T PF04142_consen 114 LGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILF-NLLALLLSDGSAISESGFFHGYSWWVWIVIFLQ- 191 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHhcccccccccCCchhhcchHHHHHHHHH-
Confidence 46778888899999999999777765334444444443 333333 33332222211110 11233333322222
Q ss_pred HHHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhc
Q 028952 79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123 (201)
Q Consensus 79 l~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~ 123 (201)
+........-+||.+.-.=+.-....-+.+.+.+..+++.++
T Consensus 192 ---a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~ 233 (244)
T PF04142_consen 192 ---AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPP 233 (244)
T ss_pred ---HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444455556788888766666666777788899999999884
No 88
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=66.44 E-value=8.1 Score=27.65 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952 108 PAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (201)
Q Consensus 108 Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~ 149 (201)
-+...+..+.+-+++ |++..++|..+|+.|+.++.+
T Consensus 68 I~~Sl~W~w~vdg~~------Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 68 IVASLLWGWLVDGVR------PDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHHHHHHhhhcCcC------CChHHHHhHHHHHHhHHheEe
Confidence 334455556665666 899999999999999998864
No 89
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=65.87 E-value=25 Score=25.12 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.3
Q ss_pred chhhhHHHHHHHhhhhhheeee
Q 028952 129 SSLAKSIGTMVSIAGALTVTLY 150 (201)
Q Consensus 129 ~s~~~~~g~~l~~~Gv~ll~~~ 150 (201)
|+|..+.|..+|++|+.++.+.
T Consensus 84 pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 84 PDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred CcHHHhhhHHHHHhceeeeEeC
Confidence 8899999999999998887653
No 90
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=65.82 E-value=28 Score=29.50 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhcccCcchhhhhcc-cchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeec
Q 028952 82 CCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (201)
Q Consensus 82 ~~~~~~~~~gl~~~~a~~asil~~-~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~ 151 (201)
.......+.|+++-+++...-+.+ ..-..+.+-+.++++|--+...+--.....|.++.+.|+.++...+
T Consensus 224 ~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 224 VLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 444456677999998887777665 4555667777888887533211111245677888899998886443
No 91
>PRK02237 hypothetical protein; Provisional
Probab=60.50 E-value=12 Score=26.89 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952 110 FTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (201)
Q Consensus 110 ~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~ 149 (201)
...+..+.+-++| |++..++|..+|++|+.++.+
T Consensus 72 ~Sl~W~w~vdg~~------Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 72 GSLLWLWVVDGVR------PDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHhcCcC------CChhHHHhHHHHHHhHHHhee
Confidence 3444555555555 889999999999999987754
No 92
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=56.04 E-value=51 Score=26.09 Aligned_cols=93 Identities=9% Similarity=0.003 Sum_probs=48.3
Q ss_pred hhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCccccc--CCC----ccccCCC-CCCCC
Q 028952 101 SAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM--SSS----SNLHNEL-RSPQK 173 (201)
Q Consensus 101 sil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~--~~~----~~~~~~~-~~~~~ 173 (201)
...-+..|+++++......+|++ +..|++++.+...|++.-...+....... ... ...++.+ ....+
T Consensus 8 ~~~~s~~l~~v~l~~~~~~~~~~------~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 8 IIFKQNNLVLIALGNLLAAGKQV------TQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred HHHHhcchHHHHHhcccccceee------ehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 34455677777777777777774 45667777777777654222111000000 000 0000000 01123
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 174 NWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
+...|...++.+.++=+..-+.|++.
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~ 107 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKI 107 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHc
Confidence 55678777777777766666666653
No 93
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=53.27 E-value=44 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=20.0
Q ss_pred HHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 117 ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 117 ~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
+-.+|++++|....|..+-+.+=..+|++++.
T Consensus 24 L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~ 55 (89)
T PF04550_consen 24 LASNEPITLRLFIGRVILGSAVSVVAGAALIQ 55 (89)
T ss_pred HccCCCCchhHHhHHHHHhhHHHHHHHHHHhc
Confidence 44679999999766554444444455565554
No 94
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=48.89 E-value=1.1e+02 Score=22.91 Aligned_cols=30 Identities=7% Similarity=-0.094 Sum_probs=25.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028952 171 PQKNWIIGGLVLAAGSFFLSLLYIVQLDLN 200 (201)
Q Consensus 171 ~~~~~~~G~~~~l~aa~~~a~~~il~~~~~ 200 (201)
.+.+...+.+..++++..|.-|...+||+.
T Consensus 115 ~d~~~i~~l~~~li~a~IwipYf~~S~RVK 144 (149)
T PF10754_consen 115 IDAEAIRELLRSLIAAAIWIPYFLRSKRVK 144 (149)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 344567889999999999999999999863
No 95
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=46.00 E-value=29 Score=26.31 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=23.0
Q ss_pred HhhcccCcchhhhhcccchHHHHHHHHHH
Q 028952 90 VGIGYSSPTLSSAIVDLTPAFTFILALIS 118 (201)
Q Consensus 90 ~gl~~~~a~~asil~~~~Pv~~~l~a~~~ 118 (201)
.|+..-+.-.++.+.|+.|+++.+.+.++
T Consensus 67 iGi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 67 LGIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred EccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677788999999999998887655
No 96
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.21 E-value=44 Score=28.36 Aligned_cols=135 Identities=17% Similarity=0.100 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCC-CHHHHHHHHHHHH
Q 028952 5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT---RPPL-TVSIICKIFGLGL 79 (201)
Q Consensus 5 ~~~l~l~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~~~~~~~~---~~~~-~~~~~~~~~~~gl 79 (201)
.+.++-+.+.+.=+.+.+-+|..+.. +=.-+.++++-.+.+.++ .+|...+.+.-+. .++. ..+-|..+.+.|+
T Consensus 185 ~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lL-flpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 185 IGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLL-FLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHH-HHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 35666677777888888888865433 112568899999999998 9998776432111 1233 5667778888888
Q ss_pred HHHHHHHHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952 80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (201)
Q Consensus 80 ~~~~~~~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l 146 (201)
+|+.-++.-.+=+|-|+|-.=-+-...-...=.++|..+++|.-+ ...|-+-++.+.|...
T Consensus 264 fgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks------~lwwtsn~~vLvgs~~ 324 (347)
T KOG1442|consen 264 FGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKS------GLWWTSNIVVLVGSLA 324 (347)
T ss_pred HHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhh------hheeeeeEEEEehhHH
Confidence 884333333445555665322222222222335678888999843 3334555555555443
No 97
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=41.70 E-value=1.3e+02 Score=24.95 Aligned_cols=94 Identities=6% Similarity=-0.016 Sum_probs=63.6
Q ss_pred HHHHHhhcccCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCcccc
Q 028952 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH 165 (201)
Q Consensus 86 ~~~~~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~ 165 (201)
+.---+++|.+...-++.-++.-+.++..-.++++.|+ +..+....++.+..-+...-.|..
T Consensus 83 yt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~v------tsl~l~SFilMvlSS~va~w~D~q------------ 144 (309)
T COG5070 83 YTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRV------TSLELLSFILMVLSSVVATWGDQQ------------ 144 (309)
T ss_pred HhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCcc------chhhHHHHHHHHHHHHHhccchhh------------
Confidence 33457899999999999999988888888889999884 555666666666665543321110
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 028952 166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQLD 198 (201)
Q Consensus 166 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~il~~~ 198 (201)
++.......-.|-++....+++-+.|.+..|+
T Consensus 145 -~~~~~~~~lN~GY~Wm~~NclssaafVL~mrk 176 (309)
T COG5070 145 -ASAFKAQILNPGYLWMFTNCLSSAAFVLIMRK 176 (309)
T ss_pred -HHHHHhcccCCceEEEehhhHhHHHHHHHHHH
Confidence 00011122345788888888888888877665
No 98
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=36.97 E-value=11 Score=31.81 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHH
Q 028952 172 QKNWIIGGLVLAAG 185 (201)
Q Consensus 172 ~~~~~~G~~~~l~a 185 (201)
++.-++|.++++++
T Consensus 102 GQ~LF~Gi~~l~l~ 115 (381)
T PF05297_consen 102 GQTLFVGIVILFLC 115 (381)
T ss_dssp --------------
T ss_pred ccHHHHHHHHHHHH
Confidence 33445666655444
No 99
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.68 E-value=1.6e+02 Score=21.92 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=22.2
Q ss_pred HHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 119 RMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 119 ~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
.||.++.+...+...++..++..+|+.+..
T Consensus 59 GKe~lNFqIs~ti~~ivs~vLil~g~~la~ 88 (143)
T COG3296 59 GKEALNFQISYTIYSIVSFVLILAGVFLAA 88 (143)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 347777776666777788888899987654
No 100
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=32.44 E-value=51 Score=25.07 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=21.5
Q ss_pred hhcccCcchhhhhcccchHHHHHHHHHHH
Q 028952 91 GIGYSSPTLSSAIVDLTPAFTFILALISR 119 (201)
Q Consensus 91 gl~~~~a~~asil~~~~Pv~~~l~a~~~~ 119 (201)
++..-+.-+++.+.|..|++..+.+..+.
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566788889999999888776654
No 101
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=30.44 E-value=66 Score=23.53 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=20.4
Q ss_pred hcccCcchhhhhcccchHHHHHHHHHHH
Q 028952 92 IGYSSPTLSSAIVDLTPAFTFILALISR 119 (201)
Q Consensus 92 l~~~~a~~asil~~~~Pv~~~l~a~~~~ 119 (201)
++..+.-+++++.+..|++.++.+..+.
T Consensus 62 i~~~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 62 IPESSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456778888999999888876654
No 102
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=27.26 E-value=3.1e+02 Score=21.58 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=41.0
Q ss_pred HHHHHHhhcccCcchhh-----------hhcccchHHHHHHHHHHHHhhcc-------hhhhchhhhHHHHHHHhhhhhh
Q 028952 85 QTCLYVGIGYSSPTLSS-----------AIVDLTPAFTFILALISRMEKLD-------LRVQSSLAKSIGTMVSIAGALT 146 (201)
Q Consensus 85 ~~~~~~gl~~~~a~~as-----------il~~~~Pv~~~l~a~~~~~E~~~-------~r~~~s~~~~~g~~l~~~Gv~l 146 (201)
...|..+...+..++.+ ......|....+.++...+||.+ .+..-..+++.+.++.+.|+.+
T Consensus 129 ~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l 208 (214)
T PF11139_consen 129 MLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALL 208 (214)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45666666665544433 12235677778888887776653 1122456778899999999987
Q ss_pred ee
Q 028952 147 VT 148 (201)
Q Consensus 147 l~ 148 (201)
+.
T Consensus 209 ~~ 210 (214)
T PF11139_consen 209 LG 210 (214)
T ss_pred HH
Confidence 64
No 103
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=26.92 E-value=16 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=20.1
Q ss_pred hhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (201)
Q Consensus 121 E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~ 149 (201)
|+.+|++| .+.-..|.+++..|.+++-.
T Consensus 1 ~~~~w~~W-~K~~~~G~~ii~~G~~l~~y 28 (128)
T PF07960_consen 1 EPPNWRRW-AKMLVAGAVIIGGGPALVKY 28 (128)
T ss_pred CCchHHHH-HHHHHhcceeEeechHHhee
Confidence 45566665 66777888888888887653
No 104
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=26.51 E-value=92 Score=26.49 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHH-----H--HhhcCC--CCCCC---HHHHH
Q 028952 6 VTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTF-----I--YYRNRT--RPPLT---VSIIC 72 (201)
Q Consensus 6 ~~l~l~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~i~~l~~~~~-----~--~~~~~~--~~~~~---~~~~~ 72 (201)
++..+..+.+.=+...+......+. |-+|=+..++-=+....+ ++...- + ..+.++ .+... .+.|.
T Consensus 165 Gi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~-Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~ 243 (330)
T KOG1583|consen 165 GIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPL-FLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWV 243 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccch-HHHhcchHHHHHHHHhcCcceeccccCccccHHHH
Confidence 4455555555555555555554443 667778877776665554 332210 0 000110 01111 12222
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc----cCcchhhhhcccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhhee
Q 028952 73 KIFGLGLISCCVQTCLYVGIGY----SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (201)
Q Consensus 73 ~~~~~gl~~~~~~~~~~~gl~~----~~a~~asil~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~ 148 (201)
.++.- .+.|.+=..|... +++-+.++...+--.+..+++.+.++.++++.+ ++|..+.+.|.++-+
T Consensus 244 yLl~n----~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h------~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 244 YLLFN----VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWH------WLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHH----HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHH------HHHHHHHHHHHHHHH
Confidence 22222 4444443334333 345555666677778889999999999977665 599999999987654
No 105
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=24.33 E-value=1.1e+02 Score=22.84 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 173 KNWIIGGLVLAAGSFFLSLLYIVQLDL 199 (201)
Q Consensus 173 ~~~~~G~~~~l~aa~~~a~~~il~~~~ 199 (201)
.+..+|-+++=.=.+-|++|.+.++.+
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l 128 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTL 128 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhcccc
Confidence 355788888888889999999999876
No 106
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=23.85 E-value=2.1e+02 Score=24.70 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHhh-----cCCC------CCCCHHHHHHHHHH
Q 028952 10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPS-TFIYYR-----NRTR------PPLTVSIICKIFGL 77 (201)
Q Consensus 10 l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~-~~~~~~-----~~~~------~~~~~~~~~~~~~~ 77 (201)
|+++++|||+.....|.+-+++--| +...+-+.++-++ ...+ ++-.+. .+.+ ..-+++.....+.-
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL-~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aG 78 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLL-AALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAG 78 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHH-HHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHh
Confidence 4678999999999999987654222 3344444443333 2221 111111 0111 12355554544455
Q ss_pred HHHHHHHHHHHHHhhcccCcchhhhh
Q 028952 78 GLISCCVQTCLYVGIGYSSPTLSSAI 103 (201)
Q Consensus 78 gl~~~~~~~~~~~gl~~~~a~~asil 103 (201)
|++--+.+.+...++.+.+-+.+-.+
T Consensus 79 GvvfnlgNillq~aia~aGmSVafpv 104 (336)
T PF07168_consen 79 GVVFNLGNILLQAAIAFAGMSVAFPV 104 (336)
T ss_pred hHhhhhHHHHHHHHHHHhcceeeeee
Confidence 55445666676777777665554444
No 107
>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function.
Probab=23.06 E-value=1.4e+02 Score=23.62 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhh
Q 028952 107 TPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (201)
Q Consensus 107 ~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~l 146 (201)
+..+...++.++.-||+.++. ....+..|.++...|+.+
T Consensus 152 nl~wMa~lt~~~~~EK~~p~g-~~l~r~~G~~l~~~g~~l 190 (191)
T PF09948_consen 152 NLAWMAALTALMFAEKLLPWG-RRLSRAVGVALIVWGVLL 190 (191)
T ss_pred cHHHHHHHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHHHH
Confidence 556788888888999976544 245688899998888765
No 108
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=22.36 E-value=2.5e+02 Score=18.82 Aligned_cols=48 Identities=13% Similarity=-0.024 Sum_probs=37.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHH
Q 028952 1 MWSVGVTAVMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIF 48 (201)
Q Consensus 1 ~~~~~~~l~l~~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~i~ 48 (201)
|++..+.+.+++-.++=+.....+|.+.=.. .+|......+++.+.++
T Consensus 1 M~R~iAlliLvIPg~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~l 49 (77)
T PF11118_consen 1 MQRFIALLILVIPGILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLL 49 (77)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 7788888888888888788888888876322 37888888888887776
No 109
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.29 E-value=4.1e+02 Score=23.52 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028952 16 LEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFI--YYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIG 93 (201)
Q Consensus 16 ~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~gl~ 93 (201)
+|..+..+.|.+.++ ..-+..--..++++-+. ...+.-+ ..|... ++-++..-..+..+-+++ -.+.+.|.+
T Consensus 200 gWs~slY~i~ql~~n-Lq~Iwieyr~yvLgYvl-ivgliSfaVCYK~GP-p~d~RS~~ilmWtLqli~---lvl~Yfsvq 273 (452)
T KOG3817|consen 200 GWSISLYVIKQLADN-LQLIWIEYRDYVLGYVL-IVGLISFAVCYKIGP-PKDPRSQTILMWTLQLIG---LVLAYFSVQ 273 (452)
T ss_pred cchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHhhhhccCC-CCCcchhhHHHHHHHHHH---HHHHHHhcc
Confidence 688888999998875 65555555555555544 2222111 122222 232333323344444443 234457889
Q ss_pred ccCcchhhhhccc
Q 028952 94 YSSPTLSSAIVDL 106 (201)
Q Consensus 94 ~~~a~~asil~~~ 106 (201)
..+++.|.+|..+
T Consensus 274 ~p~~a~A~iI~~l 286 (452)
T KOG3817|consen 274 HPSAAIAAIIMVL 286 (452)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888777654
No 110
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=22.08 E-value=2.4e+02 Score=20.86 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhh
Q 028952 174 NWIIGGLVLAAGSFFLSLLYIVQLD 198 (201)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~il~~~ 198 (201)
++.......+...++|..|.-..++
T Consensus 69 ~~P~~~~l~v~l~~~~~f~~~~~~~ 93 (140)
T PF11168_consen 69 DYPVVMLLLVFLLFFWSFYRMSRGP 93 (140)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456777777777777777655443
No 111
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=21.15 E-value=3.8e+02 Score=20.37 Aligned_cols=50 Identities=8% Similarity=-0.142 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 028952 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTF 55 (201)
Q Consensus 2 ~~~~~~l~l~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~i~~l~~~~~ 55 (201)
|+.|+....+++-+ .-=...|..+++++||.+....=+..|... ..|+-.
T Consensus 90 krSkaF~~ili~Ll---viR~~l~~~l~~~i~~~~~~~mFf~lAfgm-IvpWRi 139 (148)
T PF07301_consen 90 KRSKAFIFILIGLL---VIRIVLKSYLSGSIDPGQLSGMFFLLAFGM-IVPWRI 139 (148)
T ss_pred eccccHHHHHHHHH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHH-HHHHHH
Confidence 45555555555544 234455666665699999999999998887 888743
No 112
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=20.62 E-value=1.5e+02 Score=25.05 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=14.9
Q ss_pred hhcccchHHHHHHHHHHHHhhcc
Q 028952 102 AIVDLTPAFTFILALISRMEKLD 124 (201)
Q Consensus 102 il~~~~Pv~~~l~a~~~~~E~~~ 124 (201)
++-.+.|+...++.+.++|+|++
T Consensus 238 I~P~lLPl~~~~~~y~llkKk~~ 260 (282)
T PRK11103 238 LMPGLVPLLLTFACMWLLRKKVN 260 (282)
T ss_pred HhhhhHHHHHHHHHHHHHhCCcc
Confidence 34456777766767777777754
No 113
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=20.46 E-value=64 Score=27.48 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=30.4
Q ss_pred hhhchhhhHHHHHHHhhhhhheeeecCCcccccCCCccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 028952 126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLL 192 (201)
Q Consensus 126 r~~~s~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~ 192 (201)
++|+.+...+|.+-.+-|..++...+++ .....|.++.=++-+||++.
T Consensus 223 ~~W~~lVl~mGsi~~l~Gl~vl~~~~~~-------------------~~~~~G~ilIGLGlvCySIs 270 (347)
T PF10951_consen 223 WKWPKLVLVMGSISILWGLYVLLASSGP-------------------ANNAPGYILIGLGLVCYSIS 270 (347)
T ss_pred hhhHHHHHHHhhHHHHhhhheEEecCCc-------------------ccCCcceeeeehhhHHHHHH
Confidence 5567777777888888888877543332 12234566666677777764
No 114
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=20.26 E-value=1.5e+02 Score=24.94 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=15.6
Q ss_pred hhcccchHHHHHHHHHHHHhhcc
Q 028952 102 AIVDLTPAFTFILALISRMEKLD 124 (201)
Q Consensus 102 il~~~~Pv~~~l~a~~~~~E~~~ 124 (201)
++-.+.|+...++.+.++|+|++
T Consensus 228 I~P~llPl~~~~~~y~llkKk~~ 250 (271)
T TIGR00828 228 LMPGLLPLGLTLLMYWLLRKKVN 250 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCCCc
Confidence 34456787777777777777754
Done!