Query 028952
Match_columns 201
No_of_seqs 130 out of 1399
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 07:56:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.4 3.9E-07 1.3E-11 67.4 5.2 68 76-149 34-103 (137)
2 3b5d_A Multidrug transporter E 98.3 9.8E-07 3.3E-11 62.8 6.5 68 76-149 34-103 (110)
3 1q90_R Cytochrome B6-F complex 5.7 5E+02 0.017 14.9 3.2 27 64-90 7-34 (49)
4 3arc_L Photosystem II reaction 5.5 4.5E+02 0.015 14.1 3.1 22 173-194 15-36 (37)
5 2jwa_A Receptor tyrosine-prote 5.2 5.2E+02 0.018 14.5 3.0 19 175-193 17-35 (44)
6 2jp3_A FXYD domain-containing 4.7 3.2E+02 0.011 16.9 1.4 15 134-148 23-37 (67)
7 2jo1_A Phospholemman; FXYD1, N 4.5 3.4E+02 0.012 17.0 1.4 15 134-148 22-36 (72)
8 2zxe_G FXYD10, phospholemman-l 4.0 3.9E+02 0.013 16.9 1.4 15 134-148 25-39 (74)
9 1afo_A Glycophorin A; integral 3.9 4.4E+02 0.015 14.4 1.4 14 134-147 16-29 (40)
10 3g15_A CK, chetk-alpha, cholin 3.7 6.8E+02 0.023 20.3 3.1 21 180-200 355-375 (401)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.37 E-value=3.9e-07 Score=67.44 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=51.8
Q ss_pred HHHHHH-HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (201)
Q Consensus 76 ~~gl~~-~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~ 149 (201)
.+++++ .+++.+++.++++.+++.+..+ .++.|+++.++++++++|+ ++..+++|+.+.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~------ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR------LDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHhc
Confidence 567777 8999999999999999999888 8999999999999999999 566678999999999998764
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.34 E-value=9.8e-07 Score=62.82 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=60.5
Q ss_pred HHHHHH-HHHHHHHHHhhcccCcchhhhh-cccchHHHHHHHHHHHHhhcchhhhchhhhHHHHHHHhhhhhheee
Q 028952 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (201)
Q Consensus 76 ~~gl~~-~~~~~~~~~gl~~~~a~~asil-~~~~Pv~~~l~a~~~~~E~~~~r~~~s~~~~~g~~l~~~Gv~ll~~ 149 (201)
..++++ .+++.++..++++.+.+.+..+ ..+.|+++.+.++++++|+ ++..|++|+.+.+.|++.+..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~------~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR------LDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHhc
Confidence 466666 8889999999999999999888 7999999999999999999 566778999999999998753
No 3
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=5.69 E-value=5e+02 Score=14.85 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHHHH
Q 028952 64 PPLTVSIICKIFGLGLIS-CCVQTCLYV 90 (201)
Q Consensus 64 ~~~~~~~~~~~~~~gl~~-~~~~~~~~~ 90 (201)
+..++|.+...+..|..+ ......+-.
T Consensus 7 pdm~RRqfln~l~~G~~a~~a~~~~~P~ 34 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGLPITTLALGY 34 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445678878777777766 444444333
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=5.46 E-value=4.5e+02 Score=14.09 Aligned_cols=22 Identities=14% Similarity=0.319 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 028952 173 KNWIIGGLVLAAGSFFLSLLYI 194 (201)
Q Consensus 173 ~~~~~G~~~~l~aa~~~a~~~i 194 (201)
.+-.+|.++++.-++.++-|..
T Consensus 15 TSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 15 TSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhcc
Confidence 3457899999999999988863
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=5.23 E-value=5.2e+02 Score=14.49 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 028952 175 WIIGGLVLAAGSFFLSLLY 193 (201)
Q Consensus 175 ~~~G~~~~l~aa~~~a~~~ 193 (201)
-..|.++++..++.+.+|.
T Consensus 17 ~vVGvll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 17 AVVGILLVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhe
Confidence 3567677777777777665
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=4.73 E-value=3.2e+02 Score=16.89 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=11.0
Q ss_pred HHHHHHHhhhhhhee
Q 028952 134 SIGTMVSIAGALTVT 148 (201)
Q Consensus 134 ~~g~~l~~~Gv~ll~ 148 (201)
+++.++++.|++++.
T Consensus 23 ifA~vLfi~GI~iil 37 (67)
T 2jp3_A 23 IFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 566777888887765
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=4.50 E-value=3.4e+02 Score=16.98 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=10.7
Q ss_pred HHHHHHHhhhhhhee
Q 028952 134 SIGTMVSIAGALTVT 148 (201)
Q Consensus 134 ~~g~~l~~~Gv~ll~ 148 (201)
+++.++++.|++++.
T Consensus 22 ifA~vLfi~GI~iil 36 (72)
T 2jo1_A 22 VIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466777788877665
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=4.03 E-value=3.9e+02 Score=16.85 Aligned_cols=15 Identities=7% Similarity=0.372 Sum_probs=11.2
Q ss_pred HHHHHHHhhhhhhee
Q 028952 134 SIGTMVSIAGALTVT 148 (201)
Q Consensus 134 ~~g~~l~~~Gv~ll~ 148 (201)
+++.++++.|++++.
T Consensus 25 ifA~vLfi~GI~iil 39 (74)
T 2zxe_G 25 IVAAVLCVIGIIILL 39 (74)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 566778888887765
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=3.93 E-value=4.4e+02 Score=14.44 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=8.7
Q ss_pred HHHHHHHhhhhhhe
Q 028952 134 SIGTMVSIAGALTV 147 (201)
Q Consensus 134 ~~g~~l~~~Gv~ll 147 (201)
++|+..+++|.+++
T Consensus 16 I~~vmaGiIG~Ill 29 (40)
T 1afo_A 16 IFGVMAGVIGTILL 29 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666667776654
No 10
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=3.70 E-value=6.8e+02 Score=20.26 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 028952 180 LVLAAGSFFLSLLYIVQLDLN 200 (201)
Q Consensus 180 ~~~l~aa~~~a~~~il~~~~~ 200 (201)
.+.+++-+.|+++.++|.+.+
T Consensus 355 ~~~~~~~l~W~~Waiiq~~~s 375 (401)
T 3g15_A 355 RFALASHFLWGLWSIVQAKIS 375 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHHHHHhhhc
Confidence 467889999999999998764
Done!