Query 028952
Match_columns 201
No_of_seqs 130 out of 1399
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 07:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028952.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028952hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 33.1 23 0.0017 16.4 2.8 19 176-194 2-20 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 5.1 2.2E+02 0.016 13.9 3.1 22 173-194 15-36 (37)
3 d1q90r_ f.23.12.1 (R:) ISP sub 4.1 2.9E+02 0.021 13.8 3.4 22 64-85 5-27 (39)
4 d1q90a3 f.23.23.1 (A:248-292) 3.1 3.9E+02 0.029 13.7 3.4 24 175-198 4-27 (45)
5 d1gl4a1 d.22.1.2 (A:399-631) D 3.0 1.2E+02 0.0088 21.8 -0.3 32 90-122 43-74 (233)
6 d1vf5c3 f.23.23.1 (C:250-286) 2.0 5.3E+02 0.039 12.5 3.5 25 174-198 4-28 (37)
7 d1nw1a_ d.144.1.8 (A:) Choline 2.0 5.2E+02 0.038 18.8 2.4 21 180-200 347-367 (395)
8 d1b0na1 a.34.1.1 (A:74-108) Si 1.9 5.3E+02 0.039 12.2 2.2 15 23-37 8-22 (35)
9 d1rh5b_ f.23.28.1 (B:) Preprot 1.8 6.8E+02 0.05 13.3 3.6 22 175-196 28-49 (56)
10 d1w53a_ a.186.1.2 (A:) Phospho 1.8 7.3E+02 0.053 14.3 2.3 21 21-41 31-51 (84)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=33.09 E-value=23 Score=16.37 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028952 176 IIGGLVLAAGSFFLSLLYI 194 (201)
Q Consensus 176 ~~G~~~~l~aa~~~a~~~i 194 (201)
.+|.+++-++.+.|+.|--
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 4788999999999998853
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.08 E-value=2.2e+02 Score=13.89 Aligned_cols=22 Identities=14% Similarity=0.319 Sum_probs=17.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 028952 173 KNWIIGGLVLAAGSFFLSLLYI 194 (201)
Q Consensus 173 ~~~~~G~~~~l~aa~~~a~~~i 194 (201)
.+-.+|.++.+.-++.++.|..
T Consensus 15 tsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhc
Confidence 3457899999999999988863
No 3
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.05 E-value=2.9e+02 Score=13.82 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHH
Q 028952 64 PPLTVSIICKIFGLGLIS-CCVQ 85 (201)
Q Consensus 64 ~~~~~~~~~~~~~~gl~~-~~~~ 85 (201)
+...+|.+..++.+|-+. ....
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g 27 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITT 27 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhh
Confidence 345677888888887766 4433
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.07 E-value=3.9e+02 Score=13.65 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 028952 175 WIIGGLVLAAGSFFLSLLYIVQLD 198 (201)
Q Consensus 175 ~~~G~~~~l~aa~~~a~~~il~~~ 198 (201)
.+.|.+..+.+.+.--+.+++-||
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKK 27 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKK 27 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888777777777777654
No 5
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.96 E-value=1.2e+02 Score=21.81 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=26.4
Q ss_pred HhhcccCcchhhhhcccchHHHHHHHHHHHHhh
Q 028952 90 VGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122 (201)
Q Consensus 90 ~gl~~~~a~~asil~~~~Pv~~~l~a~~~~~E~ 122 (201)
.+++.+++..+..+..+.|+...+ +|+|-+|.
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~~i-gWlFA~e~ 74 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGGII-GWMFAVEQ 74 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHHH-HHHTCEEC
T ss_pred EEccCCChhHhhhhhhhhhhcCce-eeeEEeec
Confidence 467788888889999999977666 88888887
No 6
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.97 E-value=5.3e+02 Score=12.54 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhh
Q 028952 174 NWIIGGLVLAAGSFFLSLLYIVQLD 198 (201)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~il~~~ 198 (201)
....|.+..+.+.+.-=+.+++-||
T Consensus 4 ~Rv~gl~~F~~~v~laQi~lVlKKK 28 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLMLILKKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567887777777766666666554
No 7
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=1.97 E-value=5.2e+02 Score=18.78 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 028952 180 LVLAAGSFFLSLLYIVQLDLN 200 (201)
Q Consensus 180 ~~~l~aa~~~a~~~il~~~~~ 200 (201)
.+.+++-+.|+++.++|.+.+
T Consensus 347 ~~~~~s~l~W~lW~~iq~~~~ 367 (395)
T d1nw1a_ 347 PFVPVSHFFWGVWGLLQVELS 367 (395)
T ss_dssp GGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHhhhhc
Confidence 366788899999999997653
No 8
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=1.88 E-value=5.3e+02 Score=12.22 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=10.2
Q ss_pred HHHHHHhcCCChHHH
Q 028952 23 LNKAAMNKGTSDFVL 37 (201)
Q Consensus 23 ~~k~~~~~~~~p~~~ 37 (201)
++|.+++.|++.-++
T Consensus 8 lVkeAM~SGvSK~QF 22 (35)
T d1b0na1 8 LVRDAMTSGVSKKQF 22 (35)
T ss_dssp HHHHHHHSCCCHHHH
T ss_pred HHHHHHHccCCHHHH
Confidence 567777777776544
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.80 E-value=6.8e+02 Score=13.28 Aligned_cols=22 Identities=5% Similarity=-0.218 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 028952 175 WIIGGLVLAAGSFFLSLLYIVQ 196 (201)
Q Consensus 175 ~~~G~~~~l~aa~~~a~~~il~ 196 (201)
...|..+++.+.+.|.++.+..
T Consensus 28 ~v~~iG~~i~G~IGf~I~li~~ 49 (56)
T d1rh5b_ 28 KVTALGISLLGIIGYIIHVPAT 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888777654
No 10
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=1.77 E-value=7.3e+02 Score=14.30 Aligned_cols=21 Identities=5% Similarity=0.118 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCChHHHHHHH
Q 028952 21 STLNKAAMNKGTSDFVLIVYS 41 (201)
Q Consensus 21 ~~~~k~~~~~~~~p~~~~~~R 41 (201)
.=++|-+++++++|-.++-.-
T Consensus 31 ~~fsre~iek~IsPEeIV~iH 51 (84)
T d1w53a_ 31 QKFSRKTIEHQIPPEEIISIH 51 (84)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 456777888889999876554
Done!