BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028953
         (201 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus
 pdb|2WQK|B Chain B, Crystal Structure Of Sure Protein From Aquifex Aeolicus
          Length = 251

 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 2   GSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILA 61
           G N G  + YSGTV+GA E    G+PS++ S     G+ N+  +   A+ C+ I+  +L 
Sbjct: 96  GPNLGEDITYSGTVSGAMEGRILGIPSIAFS---AFGRENIM-FEEIAKVCVDIVKKVL- 150

Query: 62  EIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 99
              N+  PE  +LN+++P       KG K+T+QG   +K
Sbjct: 151 ---NEGIPEDTYLNVNIPNLRYEEIKGIKVTRQGKRAYK 186


>pdb|3TY2|A Chain A, Structure Of A 5'-Nucleotidase (Sure) From Coxiella
           Burnetii
 pdb|3TY2|B Chain B, Structure Of A 5'-Nucleotidase (Sure) From Coxiella
           Burnetii
          Length = 261

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 11/96 (11%)

Query: 2   GSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILA 61
           G N G  V YSGTVA A E  F G+P++++S     G      Y  AA+    ++  ++ 
Sbjct: 104 GPNLGDDVWYSGTVAAAXEGRFLGLPALAVSL----GGELFRYYETAAK----VVYQLIQ 155

Query: 62  EIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGT 95
            I     P    LNI++P D+P    KG+++T+ GT
Sbjct: 156 RIEKDPLPPSTILNINVP-DLPYEELKGFEVTRLGT 190


>pdb|2V4O|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
           Angstrom Resolution In Monoclinic Form
 pdb|2V4O|B Chain B, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
           Angstrom Resolution In Monoclinic Form
 pdb|2V4O|C Chain C, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
           Angstrom Resolution In Monoclinic Form
 pdb|2V4O|D Chain D, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
           Angstrom Resolution In Monoclinic Form
          Length = 267

 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 48/176 (27%)

Query: 2   GSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDY----TLAAEACLPIIN 57
           G N G  V+YSGTVA A E    G P++++S         +N Y    T AA  C     
Sbjct: 108 GPNLGDDVIYSGTVAAAMEGRHLGFPALAVS---------LNGYQHYDTAAAVTC----- 153

Query: 58  AILAEIRNQTYPERCFLNIDLPTDIP--NNKGYKLTKQGTSIFKMGWRRVTSEMQGGKML 115
           A+L  +  +       LN+++P D+P    KG ++T+ G+                    
Sbjct: 154 ALLRGLSREPLRTGRILNVNVP-DLPLAQVKGIRVTRCGSR------------------- 193

Query: 116 STMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPI 171
                  D  +  E     P    L +       + A PDTD+  + EGY++VTP+
Sbjct: 194 ----HPADKVIPQE----DPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPL 241


>pdb|2V4N|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 1.7
           Angstrom Resolution In Orthorhombic Form
          Length = 254

 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 40/172 (23%)

Query: 2   GSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILA 61
           G N G  V+YSGTVA A E    G P++++S +   G  + +  T AA  C     A+L 
Sbjct: 95  GPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLN---GYQHYD--TAAAVTC-----ALLR 144

Query: 62  EIRNQTYPERCFLNIDLPTDIP--NNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMT 119
            +  +       LN+++P D+P    KG ++T+ G+       + +  E   G  L  + 
Sbjct: 145 GLSREPLRTGRILNVNVP-DLPLAQVKGIRVTRCGSR--HPADKVIPQEDPRGNTLYWIG 201

Query: 120 MDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYITVTPI 171
              D                          + A PDTD+  + EGY++VTP+
Sbjct: 202 PPGDK-------------------------YDAGPDTDFAAVDEGYVSVTPL 228


>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima
 pdb|1J9J|B Chain B, Crystal Structure Analysis Of Sure Protein From T.Maritima
 pdb|1J9K|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Tungstate
 pdb|1J9K|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Tungstate
 pdb|1J9L|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Vanadate
 pdb|1J9L|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Vanadate
          Length = 247

 Score = 35.8 bits (81), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 2   GSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILA 61
           G N G  +++SGTV+GA E     +PS++I        S+ N  +   E     +   L 
Sbjct: 97  GPNMGMDILHSGTVSGAMEGAMMNIPSIAI--------SSANYESPDFEGAARFLIDFLK 148

Query: 62  EIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQ 93
           E           LNI++P      KG++ T+Q
Sbjct: 149 EFDFSLLDPFTMLNINVPAG--EIKGWRFTRQ 178


>pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107
 pdb|1ILV|B Chain B, Crystal Structure Analysis Of The Tm107
          Length = 247

 Score = 33.9 bits (76), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 2   GSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILA 61
           G N G  +++SGTV+GA E     +PS++I        S+ N  +   E     +   L 
Sbjct: 97  GPNXGXDILHSGTVSGAXEGAXXNIPSIAI--------SSANYESPDFEGAARFLIDFLK 148

Query: 62  EIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQ 93
           E           LNI++P      KG++ T+Q
Sbjct: 149 EFDFSLLDPFTXLNINVPAG--EIKGWRFTRQ 178


>pdb|2E69|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Sulfate
 pdb|2E69|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Sulfate
 pdb|2E69|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Sulfate
 pdb|2E69|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Sulfate
 pdb|2E6B|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Magnesium And Tungstate
 pdb|2E6B|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Magnesium And Tungstate
 pdb|2E6B|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Magnesium And Tungstate
 pdb|2E6B|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Magnesium And Tungstate
 pdb|2E6C|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 Cocrystallized With
           Manganese And Amp
 pdb|2E6C|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 Cocrystallized With
           Manganese And Amp
 pdb|2E6C|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 Cocrystallized With
           Manganese And Amp
 pdb|2E6C|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 Cocrystallized With
           Manganese And Amp
 pdb|2E6E|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8
 pdb|2E6E|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8
 pdb|2E6E|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8
 pdb|2E6E|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8
 pdb|2E6G|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|E Chain E, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|F Chain F, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|G Chain G, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|H Chain H, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|I Chain I, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|J Chain J, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|K Chain K, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
 pdb|2E6G|L Chain L, Crystal Structure Of The Stationary Phase Survival Protein
           Sure From Thermus Thermophilus Hb8 In Complex With
           Phosphate
          Length = 244

 Score = 31.6 bits (70), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 1   MGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 32
           +GSN G+ + +SGTVA A++ +  G+ + + S
Sbjct: 97  LGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFS 128


>pdb|2E6H|A Chain A, Crystal Structure Of E37a Mutant Of The Stationary Phase
           Survival Protein Sure From Thermus Thermophilus Hb8
           Cocrystallized With Manganese And Amp
 pdb|2E6H|B Chain B, Crystal Structure Of E37a Mutant Of The Stationary Phase
           Survival Protein Sure From Thermus Thermophilus Hb8
           Cocrystallized With Manganese And Amp
 pdb|2E6H|C Chain C, Crystal Structure Of E37a Mutant Of The Stationary Phase
           Survival Protein Sure From Thermus Thermophilus Hb8
           Cocrystallized With Manganese And Amp
 pdb|2E6H|D Chain D, Crystal Structure Of E37a Mutant Of The Stationary Phase
           Survival Protein Sure From Thermus Thermophilus Hb8
           Cocrystallized With Manganese And Amp
          Length = 244

 Score = 31.6 bits (70), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 1   MGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 32
           +GSN G+ + +SGTVA A++ +  G+ + + S
Sbjct: 97  LGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFS 128


>pdb|2HQA|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
           Coli Replicative Dna Polymerase Iii
          Length = 917

 Score = 28.5 bits (62), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 135 PLEEDLLFRREVRGAHIADPDTDWQFLRE 163
           PLE DLLF R +    ++ PD D  F  E
Sbjct: 381 PLEFDLLFERFLNPERVSXPDFDVDFCXE 409


>pdb|3P0L|A Chain A, Human Steroidogenic Acute Regulatory Protein
 pdb|3P0L|B Chain B, Human Steroidogenic Acute Regulatory Protein
 pdb|3P0L|C Chain C, Human Steroidogenic Acute Regulatory Protein
 pdb|3P0L|D Chain D, Human Steroidogenic Acute Regulatory Protein
          Length = 221

 Score = 27.7 bits (60), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 101 GWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLE---EDLLFRREVRG 148
           GW++ + +  G K++S +  D      +E     P+E   E+L+ R E  G
Sbjct: 32  GWKKESQQDNGDKVMSKVVPDVGKVFRLEVVVDQPMERLYEELVERMEAMG 82


>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
           Transmembrane Serine Protease Hepsin With Covalently
           Bound Preferred Substrate
          Length = 372

 Score = 26.9 bits (58), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 4   NCGYHVVYSGTVAGAREAFFHGVP-SVSISYD---WVGGKSNVNDYTLAAEACLPIINAI 59
           +CG   +    + G R+      P  VS+ YD     GG     D+ L A  C P  N +
Sbjct: 107 DCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRV 166

Query: 60  LAEIR 64
           L+  R
Sbjct: 167 LSRWR 171


>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
           An Inhibitory Antibody
 pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
           An Inhibitory Antibody
          Length = 372

 Score = 26.9 bits (58), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 4   NCGYHVVYSGTVAGAREAFFHGVP-SVSISYD---WVGGKSNVNDYTLAAEACLPIINAI 59
           +CG   +    + G R+      P  VS+ YD     GG     D+ L A  C P  N +
Sbjct: 107 DCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRV 166

Query: 60  LAEIR 64
           L+  R
Sbjct: 167 LSRWR 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,159,298
Number of Sequences: 62578
Number of extensions: 246016
Number of successful extensions: 552
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 21
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)