Query 028953
Match_columns 201
No_of_seqs 131 out of 1160
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13935 stationary phase surv 100.0 3.9E-42 8.5E-47 291.3 17.3 153 1-189 96-249 (253)
2 PRK13933 stationary phase surv 100.0 5.3E-42 1.1E-46 290.8 17.5 154 1-189 97-251 (253)
3 PRK13932 stationary phase surv 100.0 5.6E-42 1.2E-46 290.9 17.2 153 1-189 101-254 (257)
4 PRK00346 surE 5'(3')-nucleotid 100.0 7E-42 1.5E-46 289.7 17.4 157 1-189 92-249 (250)
5 COG0496 SurE Predicted acid ph 100.0 3.5E-42 7.6E-47 289.9 15.0 157 1-189 93-251 (252)
6 PRK13931 stationary phase surv 100.0 3.5E-41 7.5E-46 287.1 17.2 158 1-189 97-260 (261)
7 TIGR00087 surE 5'/3'-nucleotid 100.0 5.8E-38 1.2E-42 265.3 15.8 146 1-177 96-244 (244)
8 PRK13934 stationary phase surv 100.0 1.9E-37 4.2E-42 263.8 16.8 154 1-190 94-260 (266)
9 PF01975 SurE: Survival protei 99.9 1.9E-27 4.2E-32 195.4 7.8 94 1-99 101-195 (196)
10 COG2065 PyrR Pyrimidine operon 57.5 6.4 0.00014 31.8 1.5 26 7-33 103-130 (179)
11 PF05159 Capsule_synth: Capsul 49.4 13 0.00027 31.4 2.2 25 9-35 204-228 (269)
12 COG2110 Predicted phosphatase 44.7 44 0.00095 27.2 4.5 51 8-60 97-147 (179)
13 PF02684 LpxB: Lipid-A-disacch 43.6 17 0.00037 32.9 2.2 23 9-33 265-287 (373)
14 TIGR00215 lpxB lipid-A-disacch 42.6 19 0.00042 32.2 2.4 23 9-33 272-294 (385)
15 COG1817 Uncharacterized protei 41.9 18 0.00038 32.3 1.9 21 12-34 260-280 (346)
16 PF04007 DUF354: Protein of un 41.4 18 0.00038 32.3 1.9 19 12-32 256-274 (335)
17 PRK09864 putative peptidase; P 39.3 53 0.0011 29.6 4.6 47 13-59 290-341 (356)
18 PRK14697 bifunctional 5'-methy 36.9 2E+02 0.0042 23.9 7.5 47 16-62 175-226 (233)
19 PRK06714 S-adenosylhomocystein 35.6 1.9E+02 0.0041 24.2 7.2 47 15-61 175-226 (236)
20 TIGR01133 murG undecaprenyldip 31.3 38 0.00081 28.9 2.3 24 9-33 255-278 (348)
21 PRK05584 5'-methylthioadenosin 31.0 2.8E+02 0.0062 22.5 7.5 48 14-61 175-227 (230)
22 TIGR03107 glu_aminopep glutamy 28.8 80 0.0017 28.3 4.0 47 13-59 290-341 (350)
23 COG0763 LpxB Lipid A disacchar 28.7 37 0.0008 30.9 1.9 20 9-30 269-288 (381)
24 PRK01021 lpxB lipid-A-disaccha 27.8 45 0.00098 32.3 2.4 22 9-32 493-514 (608)
25 TIGR00236 wecB UDP-N-acetylglu 27.7 45 0.00098 29.0 2.2 20 11-32 281-300 (365)
26 PRK00025 lpxB lipid-A-disaccha 26.9 51 0.0011 28.7 2.4 20 11-32 268-287 (380)
27 TIGR03492 conserved hypothetic 26.6 50 0.0011 29.8 2.4 23 9-33 301-323 (396)
28 TIGR01012 Sa_S2_E_A ribosomal 26.0 58 0.0013 26.8 2.4 18 16-33 122-139 (196)
29 COG1938 Archaeal enzymes of AT 25.3 1.9E+02 0.0041 24.8 5.4 45 19-81 163-207 (244)
30 PRK04020 rps2P 30S ribosomal p 25.2 61 0.0013 26.9 2.4 19 15-33 127-145 (204)
31 PRK06698 bifunctional 5'-methy 24.9 2.9E+02 0.0063 25.2 7.1 47 17-63 176-227 (459)
32 cd03786 GT1_UDP-GlcNAc_2-Epime 23.4 49 0.0011 28.4 1.6 21 10-32 283-303 (363)
33 PRK00726 murG undecaprenyldiph 22.8 67 0.0015 27.7 2.4 24 9-33 257-280 (357)
34 PF02350 Epimerase_2: UDP-N-ac 22.5 1.5E+02 0.0032 26.3 4.5 22 13-34 79-100 (346)
35 PTZ00254 40S ribosomal protein 20.4 83 0.0018 27.0 2.4 17 16-32 132-148 (249)
36 PF02238 COX7a: Cytochrome c o 20.2 52 0.0011 21.7 0.8 16 8-23 27-42 (56)
No 1
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=3.9e-42 Score=291.28 Aligned_cols=153 Identities=32% Similarity=0.408 Sum_probs=132.1
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 80 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~ 80 (201)
+|.|+|.||+||||||||+||+++||||||||+... ...+|+.+++++.+++++++ +..+|++++||||||.
T Consensus 96 ~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~----~~~~~~~aa~~~~~l~~~l~----~~~~p~~~~LNVN~P~ 167 (253)
T PRK13935 96 RGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSADF----ENPDYETAARFLLNFLEEFD----FSLLPPFTALNINVPS 167 (253)
T ss_pred cCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcccC----CccCHHHHHHHHHHHHHHHH----hcCCCCCcEEEEEeCc
Confidence 699999999999999999999999999999998521 12379999999999999877 4578999999999999
Q ss_pred CC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHH
Q 028953 81 DI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQ 159 (201)
Q Consensus 81 ~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~ 159 (201)
++ .+++|+|+|+||++.|.+.|+++ .||+|+.|||+.+.... ...+++||++
T Consensus 168 ~~~~~~~gik~tr~g~~~~~~~~~~~--------------------------~dp~g~~~yw~~~~~~~-~~~~~~tD~~ 220 (253)
T PRK13935 168 VPYGEIKGWKLTRQSRRRYNDYFEER--------------------------VDPFGNKYYWMMGEIIE-DDPDDDVDYK 220 (253)
T ss_pred CChhhcCCeEEeeCCCcccCCceEEE--------------------------ECCCCCeEEEECCCccC-CCCCCCchHH
Confidence 87 67899999999999998777553 47899999999854322 1236799999
Q ss_pred HHHCCCeEEccccCCCCCCHHHHHHHHhHh
Q 028953 160 FLREGYITVTPIGALSNADMESLLYFKDWL 189 (201)
Q Consensus 160 al~~G~ISVTPL~~~~~t~~~~l~~l~~~~ 189 (201)
++++||||||||+ +++|+++.++.|++|+
T Consensus 221 al~~G~ISVTPL~-~d~T~~~~l~~l~~~~ 249 (253)
T PRK13935 221 AVREGYVSVTPIH-VFLTNEECLKKLKEVY 249 (253)
T ss_pred HHHCCcEEEecCC-cCCcCHHHHHHHHHHh
Confidence 9999999999999 8999999999999886
No 2
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=5.3e-42 Score=290.80 Aligned_cols=154 Identities=25% Similarity=0.398 Sum_probs=132.2
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 80 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~ 80 (201)
+|.|+|.||+||||||||+||+++||||||||+..... ...+|+.+++++.+++++++ ++.+|++.+||||||.
T Consensus 97 ~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~~~~~--~~~~~~~a~~~~~~lv~~l~----~~~~p~~~~lNvNiP~ 170 (253)
T PRK13933 97 KGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSADVKKG--KDENYKIAAKYALEVLNILK----KEDLKNDVVLNLNVPF 170 (253)
T ss_pred CCCCCCcCCccchhHHHHHHHHHcCCCeEEEEeccCCC--CcccHHHHHHHHHHHHHHHH----hcCCCCCcEEEEecCC
Confidence 69999999999999999999999999999999953211 12369999999999999887 4578999999999999
Q ss_pred CC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHH
Q 028953 81 DI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQ 159 (201)
Q Consensus 81 ~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~ 159 (201)
++ .+++|+|+|+||++.|.+.++++ .||+|+.|||+.+... ...+++||++
T Consensus 171 ~~~~~~~g~k~t~~g~r~y~~~~~~~--------------------------~dp~g~~~ywl~g~~~--~~~~~~tD~~ 222 (253)
T PRK13933 171 CSEEEIKGIKVCKVGNKTFNTYFSEE--------------------------IDEEGNKVYKLEGDIN--KDIYEGTDVY 222 (253)
T ss_pred CchhhcCCeEEEeCCccccCCceEEE--------------------------ECCCCCeEEEEcCCcc--CCCCCCCcHH
Confidence 87 67899999999999998776653 4789999999986422 2235799999
Q ss_pred HHHCCCeEEccccCCCCCCHHHHHHHHhHh
Q 028953 160 FLREGYITVTPIGALSNADMESLLYFKDWL 189 (201)
Q Consensus 160 al~~G~ISVTPL~~~~~t~~~~l~~l~~~~ 189 (201)
++++||||||||+ +++|+++.++.|++|+
T Consensus 223 a~~~g~iSVTPl~-~dlT~~~~l~~l~~~~ 251 (253)
T PRK13933 223 YIRQGYVTLTPLH-YDLTNFKILEEVEKLF 251 (253)
T ss_pred HHHCCcEEEEccC-cCCcChHHHHHHHHHh
Confidence 9999999999999 8999999999998875
No 3
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=5.6e-42 Score=290.91 Aligned_cols=153 Identities=23% Similarity=0.330 Sum_probs=131.3
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 80 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~ 80 (201)
+|.|+|.||+||||||||+||+++||||||||+... ...+|+.+++++.+++++++ +.++|++++||||||.
T Consensus 101 ~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~~~----~~~~~~~aa~~~~~l~~~l~----~~~~p~~~~LNVN~P~ 172 (257)
T PRK13932 101 YGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLTTY----ENADFTYAGKFARKLARKVL----REGLPPDTILSVNIPN 172 (257)
T ss_pred CCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcccC----CcCCHHHHHHHHHHHHHHHH----hcCCCCCcEEEEEeCC
Confidence 699999999999999999999999999999998532 12479999999999998877 4579999999999999
Q ss_pred CC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHH
Q 028953 81 DI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQ 159 (201)
Q Consensus 81 ~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~ 159 (201)
++ .+++|+|+|+||++.|.+.++++ .||+|+.|||+.+.... ...+++||++
T Consensus 173 ~~~~~~~gik~t~~g~~~~~~~~~~~--------------------------~dp~g~~yywl~~~~~~-~~~~~~tD~~ 225 (257)
T PRK13932 173 VPESDIQGVLITRQGRSRWEEDAIER--------------------------HDMYGNPYYWLNGTLQL-LDDSLTQDEY 225 (257)
T ss_pred CCccccCCEEEeeCCCcccccceEEe--------------------------ECcCCCeEEEECCCccC-CCCCCCChHH
Confidence 87 67899999999999998776543 47899999999854221 1236789999
Q ss_pred HHHCCCeEEccccCCCCCCHHHHHHHHhHh
Q 028953 160 FLREGYITVTPIGALSNADMESLLYFKDWL 189 (201)
Q Consensus 160 al~~G~ISVTPL~~~~~t~~~~l~~l~~~~ 189 (201)
++++||||||||+ +++|+++.++.|+.|.
T Consensus 226 al~~GyISvTPL~-~dlT~~~~l~~l~~~~ 254 (257)
T PRK13932 226 AVRHNYVAVTPLS-CDLTNHDFLSSLEQWK 254 (257)
T ss_pred HHHCCcEEEecCC-cCCcChHHHHHHHhhh
Confidence 9999999999999 8999999999998764
No 4
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=100.00 E-value=7e-42 Score=289.74 Aligned_cols=157 Identities=27% Similarity=0.426 Sum_probs=132.6
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 80 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~ 80 (201)
+|.|+|.||+||||||||+||+++||||||||+..........+|+.+++++.++++++++ ..+|++++||||||.
T Consensus 92 ~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~~~~~~~~~~~~a~~~~~~li~~l~~----~~~p~~~~lNvN~P~ 167 (250)
T PRK00346 92 HGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLAVSEGSRGWRDFETAAKVARELVRKLLE----KPLPPGTLLNVNVPD 167 (250)
T ss_pred cCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecccccccCchhhHHHHHHHHHHHHHHHHh----cCCCCCcEEEEEeCC
Confidence 6999999999999999999999999999999996421111223799999999999998874 568999999999999
Q ss_pred CC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHH
Q 028953 81 DI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQ 159 (201)
Q Consensus 81 ~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~ 159 (201)
++ .+++|+|+|+||++.|.+.|+++ .||+|+.|||+.+.... ...+++||++
T Consensus 168 ~~~~~~~g~~~t~~g~~~~~~~~~~~--------------------------~d~~g~~~yw~~~~~~~-~~~~~~tD~~ 220 (250)
T PRK00346 168 LPPEEIKGIRVTRLGKRHYAEEVIKR--------------------------VDPRGRPYYWIGGAGLE-EDAGEGTDFH 220 (250)
T ss_pred CCcccCCCEEEEeCCCccccCceEEE--------------------------ECcCCCeEEEECCCccC-CCCCCCChHH
Confidence 87 67999999999999988776543 47899999999864332 1236789999
Q ss_pred HHHCCCeEEccccCCCCCCHHHHHHHHhHh
Q 028953 160 FLREGYITVTPIGALSNADMESLLYFKDWL 189 (201)
Q Consensus 160 al~~G~ISVTPL~~~~~t~~~~l~~l~~~~ 189 (201)
++++||||||||+ +++|+++.++.|+.|+
T Consensus 221 al~~g~isvTPl~-~d~t~~~~l~~l~~~~ 249 (250)
T PRK00346 221 AVAEGYVSITPLQ-LDLTAYAALDELKDWL 249 (250)
T ss_pred HHHCCcEEEEecC-cCCcChHHHHHHHHhh
Confidence 9999999999999 8999999999998875
No 5
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=100.00 E-value=3.5e-42 Score=289.91 Aligned_cols=157 Identities=31% Similarity=0.477 Sum_probs=134.1
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCC-CCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGG-KSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 79 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~-~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P 79 (201)
.|.|+|.|++|||||||||||+++||||||+|+..... .....+|+.|++++.+++++++ .+++|...+||||||
T Consensus 93 ~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~~~~e~A~~~~~~lv~~l~----~~p~~~~~llNVNiP 168 (252)
T COG0496 93 AGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAYREAFGKQDVDFETAAKVARALVEALL----ANPLPPDTLLNVNIP 168 (252)
T ss_pred CCCccccceeeeehHHHHHHHHHcCccceeeeehhccccccccccHHHHHHHHHHHHHHHH----hCCCCCCcEEEEeCC
Confidence 59999999999999999999999999999999975421 1122589999999999999888 457899999999999
Q ss_pred CCC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChH
Q 028953 80 TDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDW 158 (201)
Q Consensus 80 ~~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~ 158 (201)
.++ .+++|+++||+|++.|...+.++ .||||+.|||+.+. ......+++||+
T Consensus 169 ~~~~~~~~gi~vtr~g~~~~~~~~~~r--------------------------~dprG~~yyW~~~~-~~~~~~~~gtD~ 221 (252)
T COG0496 169 NLPLEEIKGIRVTRLGRRRYAEPVEER--------------------------TDPRGEPYYWIGPG-GLAEDAEEGTDF 221 (252)
T ss_pred CCCccccCcEEEEechhhhccCcccee--------------------------eCCCCCEEEEecCC-CccccCCCCchH
Confidence 987 78999999999999888665442 58999999999853 222235889999
Q ss_pred HHHHCCCeEEccccCCCCCCHHHHHHHHhHh
Q 028953 159 QFLREGYITVTPIGALSNADMESLLYFKDWL 189 (201)
Q Consensus 159 ~al~~G~ISVTPL~~~~~t~~~~l~~l~~~~ 189 (201)
+++++||||||||+ +++|+++.++.++.|+
T Consensus 222 ~a~~~g~IsITPl~-~dlt~~~~~~~l~~~l 251 (252)
T COG0496 222 HAVREGYISITPLQ-LDLTAYEALESLKSWL 251 (252)
T ss_pred HHHHcCCeeccccc-cCchHHHHHHHHHHhh
Confidence 99999999999999 8999999999988776
No 6
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=3.5e-41 Score=287.09 Aligned_cols=158 Identities=25% Similarity=0.363 Sum_probs=129.1
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCC-CCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC---cceEee
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVG-GKSNVNDYTLAAEACLPIINAILAEIRNQTYPE---RCFLNI 76 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~-~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~---~~~lNV 76 (201)
+|.|+|.||+||||||||+||+++||||||||+.+.. ......+|+.++++++++++++++. ..+|. +++|||
T Consensus 97 ~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~~~~~~~~~~~~~~~~a~~~~~~l~~~~l~~---~~~~~~~~~~~lNV 173 (261)
T PRK13931 97 RGNNSAENVLYSGTVGGAMEAALQGLPAIALSQYYGPRNEGLDDPFEAARTHGARVVRKLLEA---GPWDDEDYRLFYNV 173 (261)
T ss_pred cCCCCCcCcccchhHHHHHHHHhcCCCeEEEEeeccCCCccccccHHHHHHHHHHHHHHHHhc---cCCCCCCCCeEEEE
Confidence 6999999999999999999999999999999996431 1111236999999999999988742 22443 489999
Q ss_pred cCCCCC-CCCCCeEEeeccccccc-ceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCC
Q 028953 77 DLPTDI-PNNKGYKLTKQGTSIFK-MGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADP 154 (201)
Q Consensus 77 N~P~~~-~~~~gi~~t~~g~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 154 (201)
|||.++ .+++|+|+|+||++.|. ..++++ .||+|+.|||+.+.... ...++
T Consensus 174 N~P~~~~~~~~gik~t~~g~~~~~~~~~~~~--------------------------~d~~g~~~yw~~~~~~~-~~~~~ 226 (261)
T PRK13931 174 NFPPVPAADVKGIRVAAQGFREGTRFGVEPH--------------------------MSPSGRRFLWIKGGAQQ-VPTAP 226 (261)
T ss_pred EeCcCCcccCCceEEeECCcccccCCceEEE--------------------------ECCCCCeEEEEcCCCcC-CCCCC
Confidence 999987 67899999999999886 565542 47889999999854322 22367
Q ss_pred cChHHHHHCCCeEEccccCCCCCCHHHHHHHHhHh
Q 028953 155 DTDWQFLREGYITVTPIGALSNADMESLLYFKDWL 189 (201)
Q Consensus 155 ~tD~~al~~G~ISVTPL~~~~~t~~~~l~~l~~~~ 189 (201)
+||++++++||||||||+ +++|++..++.|+.|+
T Consensus 227 ~tD~~a~~~G~iSVTPl~-~d~t~~~~l~~l~~~~ 260 (261)
T PRK13931 227 GTDAAVNLDGYISVTPMR-ADLTAHDRLAELEALL 260 (261)
T ss_pred CCHHHHHHCCcEEEeccc-cCCcChHHHHHHHHhh
Confidence 899999999999999999 8999999999998876
No 7
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=100.00 E-value=5.8e-38 Score=265.34 Aligned_cols=146 Identities=29% Similarity=0.467 Sum_probs=119.6
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCC--CCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK--SNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDL 78 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~--~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~ 78 (201)
+|.|+|.+|+||||||||+||+++||||||||+...... +...+|+.+++++.+++++++ +..+|++++|||||
T Consensus 96 ~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~~~~~~~~~~~~~~~~aa~~~~~li~~l~----~~~~p~~~~lNVN~ 171 (244)
T TIGR00087 96 AGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIVKNLL----KNGLPGGDLLNVNV 171 (244)
T ss_pred cCCCCCccEecchhHHHHHHHHHcCCCeEEEEecccCcccccccccHHHHHHHHHHHHHHHH----hcCCCCCcEEEEEe
Confidence 699999999999999999999999999999998632111 112369999999999999887 45789999999999
Q ss_pred CCCC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcCh
Q 028953 79 PTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTD 157 (201)
Q Consensus 79 P~~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD 157 (201)
|.++ .+++|+|+|+|+++.|.+.++++ .|++|+.|||+.+........+++||
T Consensus 172 P~~~~~~~~g~~~t~~~~~~~~~~~~~~--------------------------~d~~g~~~~w~~~~~~~~~~~~~~tD 225 (244)
T TIGR00087 172 PLVPSIQNTGIRITRLGRRMYATSVEER--------------------------TDPRGRSYYWIGGDPGARCDREPGTD 225 (244)
T ss_pred CCCCcccCCCEEEEECCccccccCceEe--------------------------ECCCCCeEEEeCCCccccCCCCCCCH
Confidence 9987 57899999999999988666543 47888999998854211112367899
Q ss_pred HHHHHCCCeEEccccCCCCC
Q 028953 158 WQFLREGYITVTPIGALSNA 177 (201)
Q Consensus 158 ~~al~~G~ISVTPL~~~~~t 177 (201)
++++++||||||||+ +++|
T Consensus 226 ~~~~~~g~iSvTPl~-~d~t 244 (244)
T TIGR00087 226 VDAIRSGYISITPLK-VDLT 244 (244)
T ss_pred HHHHhCCcEEEeccc-ccCC
Confidence 999999999999999 7765
No 8
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=1.9e-37 Score=263.81 Aligned_cols=154 Identities=20% Similarity=0.307 Sum_probs=121.2
Q ss_pred CCCccccc-ccchHHHHHHHHHHHcCCCEEEEeeecCC-C-C-CCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcc-eEe
Q 028953 1 MGSNCGYH-VVYSGTVAGAREAFFHGVPSVSISYDWVG-G-K-SNVNDYTLAAEACLPIINAILAEIRNQTYPERC-FLN 75 (201)
Q Consensus 1 ~G~N~G~d-v~ySGTVgAA~EA~l~GiPAIA~S~~~~~-~-~-~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~-~lN 75 (201)
+|.|+|.| ++||||||||+||+++||||||||+.... . . ....+|+.+++++.+++++++ +..+|+++ +||
T Consensus 94 ~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~~~~~~~~~~~~~~~~~~a~~~~~~lv~~l~----~~~~p~~~~~LN 169 (266)
T PRK13934 94 LGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSAYVDDWEELLEDGEALEIMKAVVRATAEYVL----KRGMPKGVDVIS 169 (266)
T ss_pred cCCCCCcCcccccHhHHHHHHHHhcCCCEEEEecccCCcccccccchhHHHHHHHHHHHHHHHH----hcCCCCCCcEEE
Confidence 69999999 99999999999999999999999995321 1 0 011259999999999988876 45789996 999
Q ss_pred ecCCCCCCCCCCe--EEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCC
Q 028953 76 IDLPTDIPNNKGY--KLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIAD 153 (201)
Q Consensus 76 VN~P~~~~~~~gi--~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 153 (201)
||||.++. +|+ |+|+||++.|.+.++++ .||+|+.|||+.+.... ++
T Consensus 170 VN~P~~~~--~gi~~~~tr~g~r~y~~~~~~~--------------------------~dp~g~~~ywl~~~~~~---~~ 218 (266)
T PRK13934 170 VNFPRRLR--RGVKAKLVKAAKLRFAQQVERR--------------------------VDPRGRAYYWLYGTPLE---PE 218 (266)
T ss_pred EecCCCCC--CCCceEEecCCccccCCceEEE--------------------------ECCCCCeEEEECCCccC---CC
Confidence 99998763 788 99999999998776653 47899999999854322 36
Q ss_pred CcChHHHH-HCCCeEEccccCCCCCCHH-----HHHHHHhHhH
Q 028953 154 PDTDWQFL-REGYITVTPIGALSNADME-----SLLYFKDWLP 190 (201)
Q Consensus 154 ~~tD~~al-~~G~ISVTPL~~~~~t~~~-----~l~~l~~~~~ 190 (201)
++||++++ ++||||||||+ +++|+.+ .++.|++++.
T Consensus 219 ~~tD~~a~~~~GyISVTPL~-~dlT~~~~~~~~~~~~~~~~~~ 260 (266)
T PRK13934 219 PGTDVYVVLKEGNIAITPLT-LNLNALDGERAADLEALKRLVD 260 (266)
T ss_pred CCCcHHHHHHCCeEEEeccc-ccCccCccccccCHHHHHHHHH
Confidence 79999955 99999999999 7887433 3455555443
No 9
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=99.94 E-value=1.9e-27 Score=195.38 Aligned_cols=94 Identities=34% Similarity=0.560 Sum_probs=74.4
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 80 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~ 80 (201)
+|.|+|.+++||||||||+||+++||||||||+.... +....+|+.+++++.+++++++ +..+|++++||||||.
T Consensus 101 ~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~~-~~~~~~~~~aa~~~~~~i~~~~----~~~~~~~~~lNVN~P~ 175 (196)
T PF01975_consen 101 HGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSDS-ESKDPDFETAARFAVKLIEKLL----KNPLPPGVVLNVNFPS 175 (196)
T ss_dssp ES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSS-T-SSCHHHHHHHHHHHHHHHHH----HSGSSTTSEEEEEEES
T ss_pred CCccCCcCcccccHHHHHHHHHHcCCCeEEEeccccC-CCcHHHHHHHHHHHHHHHHHHh----hcCCCCCcEEEEEcCC
Confidence 5999999999999999999999999999999998652 1123479999999999999887 4568999999999999
Q ss_pred CC-CCCCCeEEeeccccccc
Q 028953 81 DI-PNNKGYKLTKQGTSIFK 99 (201)
Q Consensus 81 ~~-~~~~gi~~t~~g~~~~~ 99 (201)
++ .+++|+++|++|+++|.
T Consensus 176 ~~~~~~~g~~~t~~g~~~y~ 195 (196)
T PF01975_consen 176 VPCEEIKGIKVTRLGRRRYK 195 (196)
T ss_dssp S-GGG-SEEEE-B--CCSCE
T ss_pred CCcccCCCEEEEECCcceeC
Confidence 87 68999999999999986
No 10
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=57.52 E-value=6.4 Score=31.81 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=20.5
Q ss_pred ccccchH-HHHHHHHHHH-cCCCEEEEee
Q 028953 7 YHVVYSG-TVAGAREAFF-HGVPSVSISY 33 (201)
Q Consensus 7 ~dv~ySG-TVgAA~EA~l-~GiPAIA~S~ 33 (201)
.||+|+| ||=||+.|.+ +|-|+ .+.+
T Consensus 103 DDVLytGRTIRAAldal~d~GRPa-~I~L 130 (179)
T COG2065 103 DDVLYTGRTIRAALDALVDYGRPA-KIQL 130 (179)
T ss_pred eeecccCccHHHHHHHHHhcCCcc-eEEE
Confidence 4799998 9999999988 67775 3443
No 11
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=49.41 E-value=13 Score=31.44 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=20.5
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEeeec
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSISYDW 35 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S~~~ 35 (201)
+..++||| +||+++|+|.|.+-..+
T Consensus 204 vtinStvG--lEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 204 VTINSTVG--LEALLHGKPVIVFGRAF 228 (269)
T ss_pred EEECCHHH--HHHHHcCCceEEecCcc
Confidence 45578865 99999999999997654
No 12
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=44.71 E-value=44 Score=27.18 Aligned_cols=51 Identities=22% Similarity=0.091 Sum_probs=37.6
Q ss_pred cccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHH
Q 028953 8 HVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAIL 60 (201)
Q Consensus 8 dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~ 60 (201)
+.+++.+.++...|.-+|+.||||=.-... -...+++.+++.+.+-+..++
T Consensus 97 e~l~~a~~~~l~~a~~~g~~SiAfPaistG--v~G~p~~~aa~i~~~~v~~~~ 147 (179)
T COG2110 97 ELLAAAYRAALRLAKEAGVRSVAFPAISTG--VYGFPLEEAARIAVEAVKDFL 147 (179)
T ss_pred HHHHHHHHHHHHHHHHcCCceeecccccCc--ccCCCHHHHHHHHHHHHHHhc
Confidence 478899999999999999999999432110 112468888888877766544
No 13
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=43.63 E-value=17 Score=32.87 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=19.4
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEee
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
+..||| |.+|++++|+|.|-+=-
T Consensus 265 l~~SGT--aTLE~Al~g~P~Vv~Yk 287 (373)
T PF02684_consen 265 LAASGT--ATLEAALLGVPMVVAYK 287 (373)
T ss_pred hhcCCH--HHHHHHHhCCCEEEEEc
Confidence 567999 58999999999998753
No 14
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=42.65 E-value=19 Score=32.18 Aligned_cols=23 Identities=35% Similarity=0.231 Sum_probs=18.9
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEee
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
|.-|||+ .+|++++|+|+|.+--
T Consensus 272 V~~SGt~--tlEa~a~G~P~Vv~yk 294 (385)
T TIGR00215 272 LLASGTA--ALEAALIKTPMVVGYR 294 (385)
T ss_pred eecCCHH--HHHHHHcCCCEEEEEc
Confidence 4459996 5699999999999864
No 15
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.94 E-value=18 Score=32.31 Aligned_cols=21 Identities=43% Similarity=0.581 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEeee
Q 028953 12 SGTVAGAREAFFHGVPSVSISYD 34 (201)
Q Consensus 12 SGTVgAA~EA~l~GiPAIA~S~~ 34 (201)
|||. |+||++.|+|||..+-+
T Consensus 260 ggTM--arEaAlLGtpaIs~~pG 280 (346)
T COG1817 260 GGTM--AREAALLGTPAISCYPG 280 (346)
T ss_pred CchH--HHHHHHhCCceEEecCC
Confidence 7776 79999999999998843
No 16
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=41.41 E-value=18 Score=32.27 Aligned_cols=19 Identities=47% Similarity=0.679 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEe
Q 028953 12 SGTVAGAREAFFHGVPSVSIS 32 (201)
Q Consensus 12 SGTVgAA~EA~l~GiPAIA~S 32 (201)
+||. |+||+++|+|||.+.
T Consensus 256 ggTM--a~EAA~LGtPaIs~~ 274 (335)
T PF04007_consen 256 GGTM--AREAALLGTPAISCF 274 (335)
T ss_pred CcHH--HHHHHHhCCCEEEec
Confidence 5665 799999999999753
No 17
>PRK09864 putative peptidase; Provisional
Probab=39.34 E-value=53 Score=29.55 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCCCCC-----CCCChHHHHHHHHHHHHHH
Q 028953 13 GTVAGAREAFFHGVPSVSISYDWVGGKS-----NVNDYTLAAEACLPIINAI 59 (201)
Q Consensus 13 GTVgAA~EA~l~GiPAIA~S~~~~~~~~-----~~~~~~~aa~~~~~li~~l 59 (201)
||=|+|++=...|||++.+|....--++ ...|++.+.+++..+++.+
T Consensus 290 gTDa~~i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 290 ATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred CchHHHHHHhCCCCcEEEEeeccCcCCCcceEeEHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999986431111 1246777777766666554
No 18
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=36.91 E-value=2e+02 Score=23.91 Aligned_cols=47 Identities=26% Similarity=0.265 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCEEEEeeecC-CCCCCCCChH----HHHHHHHHHHHHHHHH
Q 028953 16 AGAREAFFHGVPSVSISYDWV-GGKSNVNDYT----LAAEACLPIINAILAE 62 (201)
Q Consensus 16 gAA~EA~l~GiPAIA~S~~~~-~~~~~~~~~~----~aa~~~~~li~~l~~~ 62 (201)
+.|.-|..+|+|.+++=.-.+ -+.....+|+ .+++.+.+++..+++.
T Consensus 175 Ava~v~~~~~vpfl~iR~ISD~a~~~~~~~~~~~~~~aa~~~~~~~~~~l~~ 226 (233)
T PRK14697 175 AIGHVAYINEVPFLVIRCISDSADDEAQISYDDFAKTAANYCSEIIVEMLKN 226 (233)
T ss_pred HHHHHHHHcCCCEEEEEEeccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556679999999843221 1122233455 4666666666666643
No 19
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=35.58 E-value=1.9e+02 Score=24.18 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCEEEEeeecC-CCCCCCCChH----HHHHHHHHHHHHHHH
Q 028953 15 VAGAREAFFHGVPSVSISYDWV-GGKSNVNDYT----LAAEACLPIINAILA 61 (201)
Q Consensus 15 VgAA~EA~l~GiPAIA~S~~~~-~~~~~~~~~~----~aa~~~~~li~~l~~ 61 (201)
-+.|.-+..+|+|.+++=.-.+ -++....+|+ .|++.+.+++.++++
T Consensus 175 aAvA~vc~~~~vP~l~IR~ISD~a~~~~~~~~~~f~~~aa~~sa~~~~~~l~ 226 (236)
T PRK06714 175 AAFAYVCQINKKPFLCLKAASDQANDKTKEEQKIFKMLACERACEHLIAFLR 226 (236)
T ss_pred HHHHHHHHHhCCCEEEEEEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778889999999843221 1122233444 466666666666664
No 20
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=31.34 E-value=38 Score=28.90 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=19.0
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEee
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
|..||+ ...+||+.+|+|.|++..
T Consensus 255 v~~~g~-~~l~Ea~~~g~Pvv~~~~ 278 (348)
T TIGR01133 255 ISRAGA-STVAELAAAGVPAILIPY 278 (348)
T ss_pred EECCCh-hHHHHHHHcCCCEEEeeC
Confidence 456884 467799999999999854
No 21
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=31.03 E-value=2.8e+02 Score=22.48 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCC-CCCCCCChHH----HHHHHHHHHHHHHH
Q 028953 14 TVAGAREAFFHGVPSVSISYDWVG-GKSNVNDYTL----AAEACLPIINAILA 61 (201)
Q Consensus 14 TVgAA~EA~l~GiPAIA~S~~~~~-~~~~~~~~~~----aa~~~~~li~~l~~ 61 (201)
+.+.|.-|..+|+|.+++-.-.+. ++....+|+. |++.+.+++.++++
T Consensus 175 ~aa~a~va~~~~vp~~~ir~vSd~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (230)
T PRK05584 175 GAAIAQVCHEFGVPFVVVRAISDTADDEAHVSFDEFLAVAAKYSANILKRMLE 227 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666799999999654321 1122335553 55555566666553
No 22
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=28.84 E-value=80 Score=28.26 Aligned_cols=47 Identities=30% Similarity=0.289 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCCCCC-----CCCChHHHHHHHHHHHHHH
Q 028953 13 GTVAGAREAFFHGVPSVSISYDWVGGKS-----NVNDYTLAAEACLPIINAI 59 (201)
Q Consensus 13 GTVgAA~EA~l~GiPAIA~S~~~~~~~~-----~~~~~~~aa~~~~~li~~l 59 (201)
||=|+|+.=+-.|||++.+|....--++ ...|++.+++++..+++.+
T Consensus 290 GtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~~~~Ll~~~i~~l 341 (350)
T TIGR03107 290 GTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFLAAQAFLQAIVKKL 341 (350)
T ss_pred CchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHHHHHHHHHHHHHHhc
Confidence 7889988888899999999986432111 2246777777766665543
No 23
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=28.66 E-value=37 Score=30.92 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=16.8
Q ss_pred ccchHHHHHHHHHHHcCCCEEE
Q 028953 9 VVYSGTVAGAREAFFHGVPSVS 30 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA 30 (201)
+.-||| |++|++++|+|.|-
T Consensus 269 l~aSGT--~tLE~aL~g~P~Vv 288 (381)
T COG0763 269 LAASGT--ATLEAALAGTPMVV 288 (381)
T ss_pred HHhccH--HHHHHHHhCCCEEE
Confidence 456999 58999999999874
No 24
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=27.79 E-value=45 Score=32.27 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=18.7
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEe
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSIS 32 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S 32 (201)
+..||| |.+|++++|+|.|-+=
T Consensus 493 LaaSGT--aTLEaAL~g~PmVV~Y 514 (608)
T PRK01021 493 LAKCGT--IVLETALNQTPTIVTC 514 (608)
T ss_pred eecCCH--HHHHHHHhCCCEEEEE
Confidence 567999 5899999999998764
No 25
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=27.70 E-value=45 Score=29.04 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHcCCCEEEEe
Q 028953 11 YSGTVAGAREAFFHGVPSVSIS 32 (201)
Q Consensus 11 ySGTVgAA~EA~l~GiPAIA~S 32 (201)
-||++ .+||+.+|+|.|++.
T Consensus 281 ~Sg~~--~~EA~a~g~PvI~~~ 300 (365)
T TIGR00236 281 DSGGV--QEEAPSLGKPVLVLR 300 (365)
T ss_pred CChhH--HHHHHHcCCCEEECC
Confidence 38875 699999999999985
No 26
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=26.92 E-value=51 Score=28.70 Aligned_cols=20 Identities=35% Similarity=0.150 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHcCCCEEEEe
Q 028953 11 YSGTVAGAREAFFHGVPSVSIS 32 (201)
Q Consensus 11 ySGTVgAA~EA~l~GiPAIA~S 32 (201)
-||| +.+||+.+|+|.|.+-
T Consensus 268 ~sG~--~~lEa~a~G~PvI~~~ 287 (380)
T PRK00025 268 ASGT--VTLELALLKVPMVVGY 287 (380)
T ss_pred CccH--HHHHHHHhCCCEEEEE
Confidence 3887 4469999999999885
No 27
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=26.63 E-value=50 Score=29.78 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=18.6
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEee
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
|.-|||+- .|++.+|+|+|.+=.
T Consensus 301 I~rSGt~T--~E~a~lg~P~Ilip~ 323 (396)
T TIGR03492 301 IAMAGTAT--EQAVGLGKPVIQLPG 323 (396)
T ss_pred EECcCHHH--HHHHHhCCCEEEEeC
Confidence 34499855 999999999999763
No 28
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=25.96 E-value=58 Score=26.85 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCCEEEEee
Q 028953 16 AGAREAFFHGVPSVSISY 33 (201)
Q Consensus 16 gAA~EA~l~GiPAIA~S~ 33 (201)
-|-.||...|||.||+-=
T Consensus 122 ~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 122 QALKEASEVGIPIVALCD 139 (196)
T ss_pred HHHHHHHHcCCCEEEEee
Confidence 588999999999999964
No 29
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=25.25 E-value=1.9e+02 Score=24.79 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=28.3
Q ss_pred HHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCCC
Q 028953 19 REAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTD 81 (201)
Q Consensus 19 ~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~~ 81 (201)
.|+..+|+|++.+=-.... +.+|-..|++. .+.+++ ++|+|++..
T Consensus 163 ~e~~~r~i~a~~ll~et~~---~~PDP~AAa~v-ve~lnk--------------~~~l~V~td 207 (244)
T COG1938 163 NECLKRGIPALVLLAETFG---DRPDPRAAARV-VEALNK--------------MLGLNVDTD 207 (244)
T ss_pred HHHHHcCCCeEEEeccccC---CCCChHHHHHH-HHHHHH--------------HhcCccCHH
Confidence 5778899999999654332 23456555554 334444 557788753
No 30
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=25.16 E-value=61 Score=26.93 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCCEEEEee
Q 028953 15 VAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 15 VgAA~EA~l~GiPAIA~S~ 33 (201)
--|..||...|||.||+-=
T Consensus 127 ~~AI~EA~kl~IP~IaivD 145 (204)
T PRK04020 127 AQAVKEAIEVGIPVVALCD 145 (204)
T ss_pred HHHHHHHHHhCCCEEEEEe
Confidence 3588999999999999963
No 31
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=24.86 E-value=2.9e+02 Score=25.23 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=25.9
Q ss_pred HHHHHHHcCCCEEEEeeecC-CCCCCCCChH----HHHHHHHHHHHHHHHHH
Q 028953 17 GAREAFFHGVPSVSISYDWV-GGKSNVNDYT----LAAEACLPIINAILAEI 63 (201)
Q Consensus 17 AA~EA~l~GiPAIA~S~~~~-~~~~~~~~~~----~aa~~~~~li~~l~~~~ 63 (201)
.|.-|..+|||.+++=.-+. .++....+|+ .+++.+.+++.++++.+
T Consensus 176 va~va~~~~vp~~~iR~iSD~a~~~~~~~~~~~~~~a~~~~~~~v~~~l~~~ 227 (459)
T PRK06698 176 IGHVAYINEVPFLVIRCISDSADDEAQISYDDFAKTAANYCSEIIVEMLKTI 227 (459)
T ss_pred HHHHHHHcCCCEEEEEEeccCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556678999999843221 1122233444 45555666666666543
No 32
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=23.40 E-value=49 Score=28.42 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=17.0
Q ss_pred cchHHHHHHHHHHHcCCCEEEEe
Q 028953 10 VYSGTVAGAREAFFHGVPSVSIS 32 (201)
Q Consensus 10 ~ySGTVgAA~EA~l~GiPAIA~S 32 (201)
.-||+ ...||+++|+|.|.+-
T Consensus 283 ~~Sgg--i~~Ea~~~g~PvI~~~ 303 (363)
T cd03786 283 TDSGG--IQEEASFLGVPVLNLR 303 (363)
T ss_pred EcCcc--HHhhhhhcCCCEEeeC
Confidence 34884 5789999999999975
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=22.85 E-value=67 Score=27.68 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=19.2
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEee
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
|+.||+ +..+||+.+|+|.|++..
T Consensus 257 i~~~g~-~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 257 ICRAGA-STVAELAAAGLPAILVPL 280 (357)
T ss_pred EECCCH-HHHHHHHHhCCCEEEecC
Confidence 344674 568899999999999975
No 34
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=22.51 E-value=1.5e+02 Score=26.29 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeee
Q 028953 13 GTVAGAREAFFHGVPSVSISYD 34 (201)
Q Consensus 13 GTVgAA~EA~l~GiPAIA~S~~ 34 (201)
=|++||+.|..++||-+=+..+
T Consensus 79 ~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 79 EALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHTT-EEEEES--
T ss_pred hHHHHHHHHHHhCCCEEEecCC
Confidence 3789999999999998888765
No 35
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=20.35 E-value=83 Score=26.98 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCCEEEEe
Q 028953 16 AGAREAFFHGVPSVSIS 32 (201)
Q Consensus 16 gAA~EA~l~GiPAIA~S 32 (201)
-|-+||...|||.|||-
T Consensus 132 qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 132 QAIREASYVNIPVIALC 148 (249)
T ss_pred HHHHHHHHhCCCEEEEe
Confidence 47899999999999996
No 36
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=20.15 E-value=52 Score=21.68 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=13.4
Q ss_pred cccchHHHHHHHHHHH
Q 028953 8 HVVYSGTVAGAREAFF 23 (201)
Q Consensus 8 dv~ySGTVgAA~EA~l 23 (201)
+++||.|++.++-|..
T Consensus 27 ~~Ly~~Tm~L~~~gt~ 42 (56)
T PF02238_consen 27 DILYRVTMPLTVAGTS 42 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 6899999999887764
Done!