Query 028953
Match_columns 201
No_of_seqs 131 out of 1160
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:58:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2phj_A 5'-nucleotidase SURE; S 100.0 3.6E-45 1.2E-49 308.4 14.0 153 1-189 95-248 (251)
2 3ty2_A 5'-nucleotidase SURE; s 100.0 2.9E-45 9.8E-50 310.0 12.7 155 1-191 103-258 (261)
3 2wqk_A 5'-nucleotidase SURE; S 100.0 2E-44 6.8E-49 304.9 13.8 154 1-190 95-249 (251)
4 2v4n_A Multifunctional protein 100.0 1E-43 3.5E-48 300.5 14.0 153 1-191 94-247 (254)
5 1j9j_A Stationary phase surviV 100.0 2.6E-43 8.9E-48 297.1 15.0 151 1-189 96-246 (247)
6 2e6c_A 5'-nucleotidase SURE; S 100.0 3.4E-41 1.2E-45 283.7 11.1 144 1-185 97-240 (244)
7 1l5x_A SurviVal protein E; str 100.0 5.4E-41 1.9E-45 287.4 12.0 157 1-192 94-265 (280)
8 4g41_A MTA/SAH nucleosidase; m 60.1 41 0.0014 26.3 8.1 46 15-60 181-231 (236)
9 1v4v_A UDP-N-acetylglucosamine 44.7 10 0.00034 31.4 2.1 22 9-32 279-300 (376)
10 3beo_A UDP-N-acetylglucosamine 42.2 13 0.00043 30.6 2.3 22 9-32 287-308 (375)
11 3o4v_A MTA/SAH nucleosidase; m 39.6 62 0.0021 25.2 6.0 49 14-62 177-230 (234)
12 2wzn_A TET3, 354AA long hypoth 38.6 23 0.00079 28.0 3.3 48 12-59 295-347 (354)
13 3vat_A Dnpep, aspartyl aminope 37.2 31 0.001 31.2 4.2 49 11-60 434-487 (496)
14 3bsf_A AT4G34840, nucleosidase 36.2 1E+02 0.0035 24.4 6.9 51 14-64 190-247 (254)
15 2iyf_A OLED, oleandomycin glyc 33.7 17 0.00059 30.6 1.9 24 9-33 304-327 (430)
16 3tsa_A SPNG, NDP-rhamnosyltran 32.7 19 0.00064 29.9 1.9 23 10-33 292-314 (391)
17 2o6l_A UDP-glucuronosyltransfe 31.4 19 0.00066 26.2 1.6 21 12-33 94-114 (170)
18 3ia7_A CALG4; glycosysltransfe 28.7 24 0.00082 29.1 1.9 24 9-33 302-325 (402)
19 3eei_A 5-methylthioadenosine n 25.6 1.1E+02 0.0038 23.7 5.3 47 14-60 179-230 (233)
20 1vgv_A UDP-N-acetylglucosamine 25.5 12 0.00041 30.9 -0.6 22 10-33 288-309 (384)
21 3rsc_A CALG2; TDP, enediyne, s 25.3 30 0.001 28.9 1.9 24 9-33 318-341 (415)
22 1ybf_A AMP nucleosidase; struc 24.9 2.5E+02 0.0085 22.4 7.5 46 15-60 189-247 (268)
23 4eme_A M18 aspartyl aminopepti 24.6 62 0.0021 29.8 4.0 49 11-60 508-561 (571)
24 1vi6_A 30S ribosomal protein S 23.5 46 0.0016 26.5 2.6 17 16-32 129-145 (208)
25 3dp9_A MTA/SAH nucleosidase; v 23.1 1.4E+02 0.0046 23.1 5.4 46 15-60 177-227 (231)
26 2h8g_A 5'-methylthioadenosine 22.9 1.7E+02 0.0058 23.5 6.1 49 14-62 203-258 (267)
27 1f0k_A MURG, UDP-N-acetylgluco 22.8 37 0.0013 27.6 2.0 24 9-33 259-282 (364)
28 3nm6_B MTA/SAH nucleosidase; h 21.8 1.5E+02 0.005 22.9 5.3 47 14-60 176-227 (230)
29 1zos_A 5'-methylthioadenosine 21.4 1.5E+02 0.0051 22.7 5.3 22 14-35 175-196 (230)
30 2p6p_A Glycosyl transferase; X 21.1 30 0.001 28.6 1.1 24 9-33 284-307 (384)
31 3bl6_A 5'-methylthioadenosine 20.2 1.6E+02 0.0055 22.5 5.2 21 15-35 177-197 (230)
32 3ddo_A Urdpase, upase, uridine 20.2 1.3E+02 0.0044 24.0 4.8 45 15-59 200-252 (253)
No 1
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=100.00 E-value=3.6e-45 Score=308.43 Aligned_cols=153 Identities=28% Similarity=0.394 Sum_probs=134.8
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 80 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~ 80 (201)
+|.|+|.||+|||||||||||+++||||||||+... ...+|+.|++++++|++++++ .+||++++||||||.
T Consensus 95 ~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~----~~~~~~~aa~~~~~lv~~l~~----~~lp~~~~lNVN~P~ 166 (251)
T 2phj_A 95 EGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAFGR----ENIMFEEIAKVCVDIVKKVLN----EGIPEDTYLNVNIPN 166 (251)
T ss_dssp SSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEECS----SSCCHHHHHHHHHHHHHHHHH----HCCCTTEEEEEEEES
T ss_pred CCCcCCCCCccchHHHHHHHHHHcCCCeEEEEcCCC----CccCHHHHHHHHHHHHHHHHh----cCCCCCEEEEecCCC
Confidence 699999999999999999999999999999999743 234799999999999999874 579999999999999
Q ss_pred CC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHH
Q 028953 81 DI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQ 159 (201)
Q Consensus 81 ~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~ 159 (201)
++ .++||+++||||++.|.+.|+++ .||+|+.|||+.+.... ...+++||++
T Consensus 167 ~~~~~~kgi~~tr~g~~~~~~~~~~~--------------------------~dp~G~~yyWl~g~~~~-~~~~~gTD~~ 219 (251)
T 2phj_A 167 LRYEEIKGIKVTRQGKRAYKERVFKY--------------------------IDPYGKPFYWIAAEEFG-WHAEEGTDYW 219 (251)
T ss_dssp SCGGGCCEEEECBCCCCSSEEEEEEE--------------------------ECTTSCEEEEEEEESTT-TTCCTTBHHH
T ss_pred CCccccCCEEEEECcccccccceEEE--------------------------ECCCCCEEEEeCCCccc-CcCCCCCHHH
Confidence 87 68999999999999998766543 47999999999986433 2348899999
Q ss_pred HHHCCCeEEccccCCCCCCHHHHHHHHhHh
Q 028953 160 FLREGYITVTPIGALSNADMESLLYFKDWL 189 (201)
Q Consensus 160 al~~G~ISVTPL~~~~~t~~~~l~~l~~~~ 189 (201)
||++||||||||+ +++|+++.|+.|++|-
T Consensus 220 av~~G~iSVTPl~-~DlT~~~~l~~l~~~~ 248 (251)
T 2phj_A 220 AVLNGYVSVTPLH-LDLTNYKVMKSIKYLE 248 (251)
T ss_dssp HHHTTEEEEEEEE-SCCBCGGGGGGGGGGG
T ss_pred HHHCCceEEEeEe-ecCccHHHHHHHhhcc
Confidence 9999999999999 8999999999998874
No 2
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=100.00 E-value=2.9e-45 Score=310.03 Aligned_cols=155 Identities=25% Similarity=0.336 Sum_probs=135.1
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 80 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~ 80 (201)
+|.|+|.||+||||||||+||+++||||||||+... ...+|+.|++++++|+++++ +.+||++++||||||.
T Consensus 103 ~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~----~~~~~~~aa~~~~~lv~~l~----~~~lp~~~~lNVN~P~ 174 (261)
T 3ty2_A 103 AGPNLGDDVWYSGTVAAAMEGRFLGLPALAVSLGGE----LFRYYETAAKVVYQLIQRIE----KDPLPPSTILNINVPD 174 (261)
T ss_dssp ESCCCGGGGGTCHHHHHC-CCSTTSCCEEEEEECSS----SCCCHHHHHHHHHHHHHHHH----HSCCCTTCEEEEEECS
T ss_pred CCCCCCCCcCCchHHHHHHHHHHcCCCeEEEEcCCC----CccCHHHHHHHHHHHHHHHH----hcCCCCCeEEEecCCC
Confidence 599999999999999999999999999999999643 23589999999999999987 4579999999999999
Q ss_pred CC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHH
Q 028953 81 DI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQ 159 (201)
Q Consensus 81 ~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~ 159 (201)
++ .+++|+++||||++.|.+.++++ .||+|+.|||+.+.... ...+++||++
T Consensus 175 ~~~~~~kGi~vtr~g~r~~~~~~~~~--------------------------~dprG~~yyW~~g~~~~-~~~~~gTD~~ 227 (261)
T 3ty2_A 175 LPYEELKGFEVTRLGTRHRAEPTIRQ--------------------------IDPRGHPIYWVGAAGPE-QDSGPGTDFF 227 (261)
T ss_dssp SCGGGCCEEEECBCCCBCSCCCCEEE--------------------------ECTTSCEEEECCCCCCB-SSCSTTBHHH
T ss_pred CCcccCCceEEEECcccccccceEEE--------------------------ECCCCCeEEEEcCCccc-ccCCCCChHH
Confidence 88 68999999999999998766543 47999999999874222 2348899999
Q ss_pred HHHCCCeEEccccCCCCCCHHHHHHHHhHhHH
Q 028953 160 FLREGYITVTPIGALSNADMESLLYFKDWLPV 191 (201)
Q Consensus 160 al~~G~ISVTPL~~~~~t~~~~l~~l~~~~~~ 191 (201)
||.+||||||||+ +++|+++.++.|++|+..
T Consensus 228 av~~G~iSVTPl~-~DlT~~~~l~~l~~~~~~ 258 (261)
T 3ty2_A 228 AMNHHCVSITPLR-VDLTHYEAFDQLASWVKR 258 (261)
T ss_dssp HHHTTEEEEEEBC-SCCBCGGGHHHHHHHHHH
T ss_pred HHHCCceEEEeEe-ecCccHHHHHHHHHHHhh
Confidence 9999999999999 899999999999999853
No 3
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=100.00 E-value=2e-44 Score=304.95 Aligned_cols=154 Identities=28% Similarity=0.390 Sum_probs=135.5
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 80 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~ 80 (201)
+|.|+|.||+|||||||||||+++||||||||+... ...+|+.+++++.+++++++. ..+|++++||||||.
T Consensus 95 ~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~~~~----~~~~~~~a~~~~~~ii~~ll~----~~~~~~~~lNVN~P~ 166 (251)
T 2wqk_A 95 EGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAFGR----ENIMFEEIAKVCVDIVKKVLN----EGIPEDTYLNVNIPN 166 (251)
T ss_dssp SSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEECS----SSCCHHHHHHHHHHHHHHHHH----HCCCTTEEEEEEEES
T ss_pred CCCccccceecchHHHHHHHHHhcCCCeEEEEcccC----CCcchHHHHHHHHHHHHHHHH----hCCccccccccccCC
Confidence 699999999999999999999999999999999743 246899999999999999874 578999999999999
Q ss_pred CC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHH
Q 028953 81 DI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQ 159 (201)
Q Consensus 81 ~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~ 159 (201)
++ .+++|+++|+||++.|.+.++++ .||+|+.|||+.+.... ...+++||++
T Consensus 167 ~~~~~~~g~~~t~~g~~~~~~~~~~~--------------------------~dp~g~~~yw~~~~~~~-~~~~~gtD~~ 219 (251)
T 2wqk_A 167 LRYEEIKGIKVTRQGKRAYKERVFKY--------------------------IDPYGKPFYWIAAEEFG-WHAEEGTDYW 219 (251)
T ss_dssp SCGGGCCEEEECBCCCCSSEEEEEEE--------------------------ECTTSCEEEEEEEESTT-TTCCTTBHHH
T ss_pred CCccccCceEeeeccccccccceeee--------------------------eCCCCCeEEEeccCccC-CCCCCCCHHH
Confidence 88 78999999999999988665442 47899999999975433 2347899999
Q ss_pred HHHCCCeEEccccCCCCCCHHHHHHHHhHhH
Q 028953 160 FLREGYITVTPIGALSNADMESLLYFKDWLP 190 (201)
Q Consensus 160 al~~G~ISVTPL~~~~~t~~~~l~~l~~~~~ 190 (201)
||++||||||||+ +|+|+++.|+.|+.|..
T Consensus 220 av~~G~iSVTPL~-~dlT~~~~l~~l~~~~~ 249 (251)
T 2wqk_A 220 AVLNGYVSVTPLH-LDLTNYKVMKSIKYLED 249 (251)
T ss_dssp HHHTTEEEEEEEE-SCCBCGGGGGGGGGGGC
T ss_pred HHhCCcEEEeEec-cCCcCHHHHHHHHHHhh
Confidence 9999999999999 89999999999988864
No 4
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=100.00 E-value=1e-43 Score=300.52 Aligned_cols=153 Identities=25% Similarity=0.346 Sum_probs=133.3
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 80 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~ 80 (201)
+|.|+|.||+|||||||||||+++||||||||+... .+|+.|++++++|+++++ +..+|++++||||||.
T Consensus 94 ~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~------~~~~~aa~~~~~li~~l~----~~~lp~~~~lNVN~P~ 163 (254)
T 2v4n_A 94 AGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGY------QHYDTAAAVTCALLRGLS----REPLRTGRILNVNVPD 163 (254)
T ss_dssp ESCCCGGGGGGCHHHHHHHTTTTSSSCEEEEEESSS------SCHHHHHHHHHHHHHHHH----HSCCCSCSEEEEEECS
T ss_pred CCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecCcc------cCHHHHHHHHHHHHHHHH----HcCCCccceEEecCCC
Confidence 599999999999999999999999999999999521 389999999999999987 4678999999999999
Q ss_pred CC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHH
Q 028953 81 DI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQ 159 (201)
Q Consensus 81 ~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~ 159 (201)
++ .+++|+++||||++.|.+.+.++ .||+|+.|||+.+.... ...+++||++
T Consensus 164 ~~~~~~kg~~~tr~g~~~~~~~~~~~--------------------------~dp~g~~~yw~~~~~~~-~~~~~gtD~~ 216 (254)
T 2v4n_A 164 LPLAQVKGIRVTRCGSRHPADKVIPQ--------------------------EDPRGNTLYWIGPPGDK-YDAGPDTDFA 216 (254)
T ss_dssp SCGGGCCCEEECBCCEESCCCCEEEE--------------------------ECTTSCEEEEECCCCCE-EECSTTBHHH
T ss_pred CCcccCCceEEEECCccccccceeEe--------------------------ECCCCCeEEEeCCCccC-CCCCCCCHHH
Confidence 88 68999999999999987655432 47899999999864321 2237899999
Q ss_pred HHHCCCeEEccccCCCCCCHHHHHHHHhHhHH
Q 028953 160 FLREGYITVTPIGALSNADMESLLYFKDWLPV 191 (201)
Q Consensus 160 al~~G~ISVTPL~~~~~t~~~~l~~l~~~~~~ 191 (201)
||++||||||||+ +++|+++.++.|++|+..
T Consensus 217 av~~G~iSVTPl~-~d~t~~~~l~~l~~~~~~ 247 (254)
T 2v4n_A 217 AVDEGYVSVTPLH-VDLTAHSAHDVVSDWLDS 247 (254)
T ss_dssp HHHTTCEEEEEEC-SCCCCGGGHHHHHHHHHH
T ss_pred HHHCCcEEEEeEe-ccCcCHHHHHHHHHHHhc
Confidence 9999999999999 899999999999999743
No 5
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=100.00 E-value=2.6e-43 Score=297.08 Aligned_cols=151 Identities=26% Similarity=0.343 Sum_probs=131.3
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 80 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~ 80 (201)
+|.|+|.||+|||||||||||+++||||||||+... ...+|+.|++++++|+++++ +.+||++++||||||
T Consensus 96 ~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~----~~~~~~~aa~~~~~lv~~l~----~~~lp~~~~lNVN~P- 166 (247)
T 1j9j_A 96 RGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY----ESPDFEGAARFLIDFLKEFD----FSLLDPFTMLNINVP- 166 (247)
T ss_dssp ESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS----SSCCHHHHHHHHHHHHHHCC----GGGSCTTCEEEEEEC-
T ss_pred cCCCCCcCeecchhHHHHHHHHhcCCCeEEEecCCC----CCCCHHHHHHHHHHHHHHHH----HcCCCcccEEEecCC-
Confidence 599999999999999999999999999999999632 13489999999999999887 457999999999999
Q ss_pred CCCCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHHH
Q 028953 81 DIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQF 160 (201)
Q Consensus 81 ~~~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~a 160 (201)
..+++|+++|+||++.|.+.++++ .||+|+.|||+.+.... ...+++||+++
T Consensus 167 -~~~~~g~~~tr~~~~~~~~~~~~~--------------------------~dp~g~~~yw~~g~~~~-~~~~~~tD~~a 218 (247)
T 1j9j_A 167 -AGEIKGWRFTRQSRRRWNDYFEER--------------------------VSPFGEKYYWMMGEVIE-DDDRDDVDYKA 218 (247)
T ss_dssp -SSCCCEEEECBCCCCEEEEEEEEE--------------------------ECTTSCEEEEEEEEEEC-CCCCSSBHHHH
T ss_pred -ccccCceEEEECCCcccccceEEE--------------------------ECCCCCeEEEeCCcccC-CCCCCCCHHHH
Confidence 467999999999999987555432 47899999999975433 22478999999
Q ss_pred HHCCCeEEccccCCCCCCHHHHHHHHhHh
Q 028953 161 LREGYITVTPIGALSNADMESLLYFKDWL 189 (201)
Q Consensus 161 l~~G~ISVTPL~~~~~t~~~~l~~l~~~~ 189 (201)
+.+||||||||+ +++|+++.++.|++|+
T Consensus 219 ~~~g~iSVTPl~-~d~T~~~~l~~l~~~~ 246 (247)
T 1j9j_A 219 VREGYVSITPIH-PFLTNEQCLKKLREVY 246 (247)
T ss_dssp HHTTEEEEEEEC-SCCCCHHHHHHHHHHC
T ss_pred HhCCcEEEEeee-ecCcCHHHHHHHHHhh
Confidence 999999999999 8999999999999987
No 6
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=100.00 E-value=3.4e-41 Score=283.71 Aligned_cols=144 Identities=24% Similarity=0.316 Sum_probs=121.8
Q ss_pred CCCcccccccchHHHHHHHHHHHcCCCEEEEeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcceEeecCCC
Q 028953 1 MGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 80 (201)
Q Consensus 1 ~G~N~G~dv~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~~lNVN~P~ 80 (201)
+|.|+|.||+|||||||||||+++||||||||+.... ...+|+.|++++++|++++++ . |++++||||||
T Consensus 97 ~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~~---~~~~~~~aa~~~~~li~~l~~----~--p~~~~lNVN~P- 166 (244)
T 2e6c_A 97 LGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSVPLNG---EVPDFAGLRPWLLRTLETLLR----L--ERPFLVNVNLP- 166 (244)
T ss_dssp ESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEECCSS---SCCCHHHHHHHHHHHHHHHTT----S--CSSCEEEEECC-
T ss_pred cCCCCCcCeechHhHHHHHHHHhcCCCeEEEeccCCC---CCCCHHHHHHHHHHHHHHHHh----C--CcCcEEEeeCC-
Confidence 5999999999999999999999999999999996321 124899999999999999873 3 88999999999
Q ss_pred CCCCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCCcChHHH
Q 028953 81 DIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQF 160 (201)
Q Consensus 81 ~~~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~tD~~a 160 (201)
.+++|+++|+||++.|.+.++++ .||+|+.|||+.+.... . ++++||+++
T Consensus 167 --~~~~g~~~tr~g~~~~~~~~~~~--------------------------~dp~g~~~yw~~g~~~~-~-~~~~tD~~a 216 (244)
T 2e6c_A 167 --LRPKGFLWTRQSVRAYEGVVIPG--------------------------EDPMGRPFYWFAPRPLK-E-AEEGTDRWA 216 (244)
T ss_dssp --SSCCEEEECBCCCCCEECCEEEE--------------------------ECTTSCEEEEECCEESS-C-CCTTBHHHH
T ss_pred --CccCCeEEEECCCCccccceEEE--------------------------ECCCCCeEEEeCCCcCC-C-CCCCcHHHH
Confidence 46899999999999987665432 47899999999865333 2 278999999
Q ss_pred HHCCCeEEccccCCCCCCHHHHHHH
Q 028953 161 LREGYITVTPIGALSNADMESLLYF 185 (201)
Q Consensus 161 l~~G~ISVTPL~~~~~t~~~~l~~l 185 (201)
+.+||||||||+ +++|+++.++.|
T Consensus 217 ~~~g~iSVTPl~-~d~T~~~~l~~l 240 (244)
T 2e6c_A 217 VAQGFVSATPLR-LDLTDETRLQPT 240 (244)
T ss_dssp HHTTEEEEEEBC-SCCBCTTCSSCC
T ss_pred HhCCCEEeecee-cCCccHHHHHHh
Confidence 999999999999 899998765544
No 7
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=100.00 E-value=5.4e-41 Score=287.37 Aligned_cols=157 Identities=18% Similarity=0.267 Sum_probs=129.1
Q ss_pred CCCccccc-ccchHHHHHHHHHHHcCCCEEEEeeecCCCCCC---CCChHHHHHHHHHHHHHHHHHHHhcCCCCcc-eEe
Q 028953 1 MGSNCGYH-VVYSGTVAGAREAFFHGVPSVSISYDWVGGKSN---VNDYTLAAEACLPIINAILAEIRNQTYPERC-FLN 75 (201)
Q Consensus 1 ~G~N~G~d-v~ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~~---~~~~~~aa~~~~~li~~l~~~~~~~~~p~~~-~lN 75 (201)
+|.|+|.| |+|||||||||||+++||||||||+........ ..+|+.|++++++|++++++ .+||+++ +||
T Consensus 94 ~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~~~~~~~~~~~~~~~~~~aa~~~~~lv~~l~~----~~lp~~~d~LN 169 (280)
T 1l5x_A 94 LGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLK----NGMPQGVDVIS 169 (280)
T ss_dssp EBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEECCSCHHHHHTCHHHHHHHHHHHHHHHHHHHH----HCSCTTCSEEE
T ss_pred cCCcCCccccccchhHHHHHHHHHcCCCeEEEEccccCCCcccccccCHHHHHHHHHHHHHHHHh----cCCCCCCceEE
Confidence 59999999 999999999999999999999999963110000 13699999999999999874 5799999 999
Q ss_pred ecCCCCC-CCCCCeEEeecccccccceeeEeeeecCCceeeeeeeccCCccccccccCCCCCCcceEEeeeccCCCCCCC
Q 028953 76 IDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADP 154 (201)
Q Consensus 76 VN~P~~~-~~~~gi~~t~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 154 (201)
||||.++ .++| +++||||++.|.+.++++ .||+|+.|||+.+... .+++
T Consensus 170 VN~P~~~~~~~k-~~~tr~g~~~~~~~~~~~--------------------------~dprg~~~yw~~g~~~---~~~~ 219 (280)
T 1l5x_A 170 VNFPRRLGRGVR-AKLVKAAKLRYAQQVVER--------------------------VDPRGVRYYWLYGRDL---APEP 219 (280)
T ss_dssp EEECSCCCTTCC-EEECBCCSCSBCSCCEEE--------------------------ECTTSCEEEECSCSBC---CCCT
T ss_pred ecCCCCCCCCce-EEEEECCCcccccceEEE--------------------------ECCCCCeEEEeCCCcC---CCCC
Confidence 9999988 6789 999999999987665542 4789999999886432 2278
Q ss_pred cChH-HHHHCCCeEEccccCCCCCC--------HHHHHHHHhHhHHh
Q 028953 155 DTDW-QFLREGYITVTPIGALSNAD--------MESLLYFKDWLPVV 192 (201)
Q Consensus 155 ~tD~-~al~~G~ISVTPL~~~~~t~--------~~~l~~l~~~~~~~ 192 (201)
+||+ +++.+||||||||+ +++|+ .+.+..+++||...
T Consensus 220 ~tD~~~av~~G~iSVTPl~-~d~T~~~~l~~l~~~~~~~~~~~~~~~ 265 (280)
T 1l5x_A 220 ETDVYVVLKEGGIAITPLT-LNLNAVDAHREVDMDSLNRMVEYINAS 265 (280)
T ss_dssp TBHHHHHHTSCCEEEEEEC-CCCBSSCCBCCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHhCCeEEEEeEe-ccCCChHHHHhccHHHHHHHHHHHHHH
Confidence 9999 99999999999999 78886 44567777788653
No 8
>4g41_A MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, S-adenosylhomocysteine, cleavag; HET: MTA; 1.45A {Streptococcus pyogenes}
Probab=60.10 E-value=41 Score=26.28 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCEEEEeeecC-CCCCCCCChHH----HHHHHHHHHHHHH
Q 028953 15 VAGAREAFFHGVPSVSISYDWV-GGKSNVNDYTL----AAEACLPIINAIL 60 (201)
Q Consensus 15 VgAA~EA~l~GiPAIA~S~~~~-~~~~~~~~~~~----aa~~~~~li~~l~ 60 (201)
.|-|.-|..+|+|.+++..-.+ .+.....+|+. |++.+.+++.+++
T Consensus 181 aa~~~va~~~~~p~~~Ir~ISD~ad~~~~~~~~~~~~~Aa~~~a~~v~~~l 231 (236)
T 4g41_A 181 AAIAQAAHTAGKPFIVVRAMSDTAAHDANITFDQFIIEAGKRSAQILMTFL 231 (236)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSCTTCCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEEEeCCCCcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4556667789999999986433 12223345654 4555556666655
No 9
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=44.73 E-value=10 Score=31.39 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=17.8
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEe
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSIS 32 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S 32 (201)
|+-||++ .+||+.+|+|.|+.+
T Consensus 279 v~~S~g~--~lEA~a~G~PvI~~~ 300 (376)
T 1v4v_A 279 VTDSGGL--QEEGAALGVPVVVLR 300 (376)
T ss_dssp EESCHHH--HHHHHHTTCCEEECS
T ss_pred EECCcCH--HHHHHHcCCCEEecc
Confidence 3447776 779999999999875
No 10
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=42.16 E-value=13 Score=30.58 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=18.0
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEe
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSIS 32 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S 32 (201)
|+-||++ .+||+.+|+|.|+..
T Consensus 287 v~~sg~~--~lEA~a~G~Pvi~~~ 308 (375)
T 3beo_A 287 LTDSGGV--QEEAPSLGVPVLVLR 308 (375)
T ss_dssp EECCHHH--HHHHHHHTCCEEECS
T ss_pred EECCCCh--HHHHHhcCCCEEEec
Confidence 3447877 899999999999883
No 11
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A*
Probab=39.60 E-value=62 Score=25.23 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCC-CCCCCCChH----HHHHHHHHHHHHHHHH
Q 028953 14 TVAGAREAFFHGVPSVSISYDWVG-GKSNVNDYT----LAAEACLPIINAILAE 62 (201)
Q Consensus 14 TVgAA~EA~l~GiPAIA~S~~~~~-~~~~~~~~~----~aa~~~~~li~~l~~~ 62 (201)
+.+-|.-|..+|+|.+++..-.+. ++....+|+ .|++.+.+++.++++.
T Consensus 177 ~aa~a~va~~~~ip~~~ir~ISD~a~~~~~~~~~~~~~~aa~~~a~~v~~~l~~ 230 (234)
T 3o4v_A 177 ATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQK 230 (234)
T ss_dssp HHHHHHHHHHHTCCEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEEEecCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677789999999874331 111122343 3566666777766654
No 12
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=38.57 E-value=23 Score=27.98 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCCC-CC----CChHHHHHHHHHHHHHH
Q 028953 12 SGTVAGAREAFFHGVPSVSISYDWVGGKS-NV----NDYTLAAEACLPIINAI 59 (201)
Q Consensus 12 SGTVgAA~EA~l~GiPAIA~S~~~~~~~~-~~----~~~~~aa~~~~~li~~l 59 (201)
.||=|..+..+-.|||+|.++.....-+. .+ .++..+.++..++|++|
T Consensus 295 ggTDa~~~~~~~~Giptv~~G~g~~~~Ht~~E~v~i~dl~~~~~ll~~~i~~L 347 (354)
T 2wzn_A 295 TGTDANVMQINKEGVATAVLSIPIRYMHSQVELADARDVDNTIKLAKALLEEL 347 (354)
T ss_dssp CSSHHHHHHTSTTCCEEEEEEEEEBSTTSTTCEEEHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHhcCCCCEEEECcccCCCCcccEEEEHHHHHHHHHHHHHHHHhC
Confidence 56777777777789999999976432121 11 24555666555555543
No 13
>3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea center, M18 peptidase, MH CLAN, tetrahedral aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB: 3var_A 3l6s_A* 4dyo_A*
Probab=37.15 E-value=31 Score=31.23 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHcCCCEEEEeeecCCCCC-----CCCChHHHHHHHHHHHHHHH
Q 028953 11 YSGTVAGAREAFFHGVPSVSISYDWVGGKS-----NVNDYTLAAEACLPIINAIL 60 (201)
Q Consensus 11 ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~-----~~~~~~~aa~~~~~li~~l~ 60 (201)
.-||+| ++.++-.|||+|.+|....--++ ...|++.+.++...+++.+-
T Consensus 434 gGgTig-~i~~s~~Gi~tvdIGiP~ryMHS~~E~~~~~D~~~~v~Ll~af~~~~~ 487 (496)
T 3vat_A 434 CGTTIG-PILASRLGLRVLDLGSPQLAMHSIRETACTTGVLQTITLFKGFFELFP 487 (496)
T ss_dssp CCCCHH-HHHHHHHTCEEEEEECEEESTTSSSEEEESHHHHHHHHHHHHHHHHHH
T ss_pred CcchHH-HHHhcccCCcEEEecHhhhccccHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 468888 46678899999999976321111 13478788887777776643
No 14
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana}
Probab=36.20 E-value=1e+02 Score=24.45 Aligned_cols=51 Identities=16% Similarity=0.064 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCEEEEeeecC--CCCC-CCCC----hHHHHHHHHHHHHHHHHHHH
Q 028953 14 TVAGAREAFFHGVPSVSISYDWV--GGKS-NVND----YTLAAEACLPIINAILAEIR 64 (201)
Q Consensus 14 TVgAA~EA~l~GiPAIA~S~~~~--~~~~-~~~~----~~~aa~~~~~li~~l~~~~~ 64 (201)
+.+-|.-|..+|+|.+++..-.+ ..+. .... .+.+++.+.+++.++++.+.
T Consensus 190 ~aa~a~va~~~~ip~~~Ir~ISD~a~~~~~s~~~~~~~~~~a~~~~~~~l~~~l~~l~ 247 (254)
T 3bsf_A 190 GAAVAYVADIFKVPTILIKGVTDIVDGNRPTSEEFLENLAAVTAKLDESLTKVIDFIS 247 (254)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEEETTTTCCSTTTTTSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556667789999999976422 1111 1222 34566666677777665543
No 15
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=33.71 E-value=17 Score=30.64 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=19.5
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEee
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
|..||. +..+||+.+|+|.|++-.
T Consensus 304 v~~~G~-~t~~Ea~~~G~P~i~~p~ 327 (430)
T 2iyf_A 304 VTHAGA-GGSQEGLATATPMIAVPQ 327 (430)
T ss_dssp EECCCH-HHHHHHHHTTCCEEECCC
T ss_pred EECCCc-cHHHHHHHhCCCEEECCC
Confidence 445775 779999999999999853
No 16
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=32.65 E-value=19 Score=29.94 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHHcCCCEEEEee
Q 028953 10 VYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 10 ~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
..+|+ +..+||+.+|+|.|++..
T Consensus 292 ~~~G~-~t~~Ea~~~G~P~v~~p~ 314 (391)
T 3tsa_A 292 CAGGS-GTAFTATRLGIPQLVLPQ 314 (391)
T ss_dssp ECCCH-HHHHHHHHTTCCEEECCC
T ss_pred eCCCH-HHHHHHHHhCCCEEecCC
Confidence 34665 667999999999999854
No 17
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=31.41 E-value=19 Score=26.22 Aligned_cols=21 Identities=43% Similarity=0.841 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEee
Q 028953 12 SGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 12 SGTVgAA~EA~l~GiPAIA~S~ 33 (201)
+| .+..+||+.+|+|.|++-.
T Consensus 94 ~G-~~t~~Ea~~~G~P~i~~p~ 114 (170)
T 2o6l_A 94 GG-ANGIYEAIYHGIPMVGIPL 114 (170)
T ss_dssp CC-HHHHHHHHHHTCCEEECCC
T ss_pred CC-ccHHHHHHHcCCCEEeccc
Confidence 44 4888999999999999975
No 18
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=28.73 E-value=24 Score=29.14 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=18.7
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEee
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
|..||+ +..+||+.+|+|.|.+-.
T Consensus 302 v~~~G~-~t~~Ea~~~G~P~v~~p~ 325 (402)
T 3ia7_A 302 LTHGTT-GAVLEAFAAGVPLVLVPH 325 (402)
T ss_dssp EECCCH-HHHHHHHHTTCCEEECGG
T ss_pred EECCCH-HHHHHHHHhCCCEEEeCC
Confidence 445765 556999999999998754
No 19
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1
Probab=25.62 E-value=1.1e+02 Score=23.68 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCC-CCCCCCChHH----HHHHHHHHHHHHH
Q 028953 14 TVAGAREAFFHGVPSVSISYDWVG-GKSNVNDYTL----AAEACLPIINAIL 60 (201)
Q Consensus 14 TVgAA~EA~l~GiPAIA~S~~~~~-~~~~~~~~~~----aa~~~~~li~~l~ 60 (201)
+.+-|.-|..+|+|.+++..-.+. +.....+|+. |++.+.+++.+++
T Consensus 179 ~aa~a~~a~~~gip~~~ir~IsD~a~~~~~~~~~~~~~~aa~~~~~~v~~~l 230 (233)
T 3eei_A 179 AAAIAQTCHQLETPFVIIRAVSDSADEKADISFDEFLKTAAANSAKMVAEIV 230 (233)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEEecCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345566677899999999864331 1111223544 4555555665554
No 20
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=25.51 E-value=12 Score=30.90 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=17.9
Q ss_pred cchHHHHHHHHHHHcCCCEEEEee
Q 028953 10 VYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 10 ~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
+-||++ .+||+.+|+|.|+.-.
T Consensus 288 ~~Sg~~--~lEA~a~G~PvI~~~~ 309 (384)
T 1vgv_A 288 TDSGGI--QEEAPSLGKPVLVMRD 309 (384)
T ss_dssp ESSSTG--GGTGGGGTCCEEEESS
T ss_pred ECCcch--HHHHHHcCCCEEEccC
Confidence 347766 7899999999999854
No 21
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=25.26 E-value=30 Score=28.91 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=18.5
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEee
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
|..||+ +..+||+.+|+|.|++-.
T Consensus 318 v~~~G~-~t~~Ea~~~G~P~v~~p~ 341 (415)
T 3rsc_A 318 VTHGGM-GTLMEALYWGRPLVVVPQ 341 (415)
T ss_dssp EESCCH-HHHHHHHHTTCCEEECCC
T ss_pred EECCcH-HHHHHHHHhCCCEEEeCC
Confidence 344664 556999999999999854
No 22
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1
Probab=24.89 E-value=2.5e+02 Score=22.43 Aligned_cols=46 Identities=9% Similarity=-0.107 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCEEEEeeecCC---CC-C---------CCCChHHHHHHHHHHHHHHH
Q 028953 15 VAGAREAFFHGVPSVSISYDWVG---GK-S---------NVNDYTLAAEACLPIINAIL 60 (201)
Q Consensus 15 VgAA~EA~l~GiPAIA~S~~~~~---~~-~---------~~~~~~~aa~~~~~li~~l~ 60 (201)
.+-|.-|..+|+|++++..-... .+ . -...++.+.+++.+.++.|.
T Consensus 189 aal~~~a~~~gv~~~~i~~VsD~~~~~~g~~~~~~~~~~~~~~~~~~i~iale~~~~l~ 247 (268)
T 1ybf_A 189 ATLMTVGFANKIPMGALLLISDRPMFPEGVKTEESDQLVTDNFAEEHLMLGIDALEIIR 247 (268)
T ss_dssp HHHHHHHHHTTCCEEEEEEECSCSSCCSSCCCCCC------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEEEcCCCCcccccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677899999999875321 11 0 11346777788777777665
No 23
>4eme_A M18 aspartyl aminopeptidase; dnpep/M18/aminopeptidase, protease, hydrolase; 2.60A {Plasmodium falciparum 3D7}
Probab=24.61 E-value=62 Score=29.79 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHcCCCEEEEeeecCCCCC-----CCCChHHHHHHHHHHHHHHH
Q 028953 11 YSGTVAGAREAFFHGVPSVSISYDWVGGKS-----NVNDYTLAAEACLPIINAIL 60 (201)
Q Consensus 11 ySGTVgAA~EA~l~GiPAIA~S~~~~~~~~-----~~~~~~~aa~~~~~li~~l~ 60 (201)
.-||+| ++.++-.|||+|.+|....--++ ...|+..+.++...+++.+-
T Consensus 508 gGgTig-~i~~s~~GIpTvdIGiP~ryMHS~~E~~~~~Dv~~~vkLl~aFl~~~~ 561 (571)
T 4eme_A 508 CGSTVG-SMVAANLSMPGIDIGIPQLAMHSIREIAAVHDVFFLIKGVFAFYTYYN 561 (571)
T ss_dssp CCCCSH-HHHHHHHTCCEEEEECEEESTTSSSEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHH-HHHHhCCCCcEEEechhhhccchHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 457886 56677899999999976321111 12367777777777766643
No 24
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=23.50 E-value=46 Score=26.53 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCEEEEe
Q 028953 16 AGAREAFFHGVPSVSIS 32 (201)
Q Consensus 16 gAA~EA~l~GiPAIA~S 32 (201)
-|-.||...|||.||+-
T Consensus 129 ~ai~EA~~l~IPvIalv 145 (208)
T 1vi6_A 129 QAVSEATAVGIPVVALC 145 (208)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHhCCCEEEEe
Confidence 37899999999999994
No 25
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1
Probab=23.07 E-value=1.4e+02 Score=23.12 Aligned_cols=46 Identities=17% Similarity=0.071 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCC-CCCCCCChHH----HHHHHHHHHHHHH
Q 028953 15 VAGAREAFFHGVPSVSISYDWVG-GKSNVNDYTL----AAEACLPIINAIL 60 (201)
Q Consensus 15 VgAA~EA~l~GiPAIA~S~~~~~-~~~~~~~~~~----aa~~~~~li~~l~ 60 (201)
.+-|.-|..+|+|.+++..-.+. ++....+|+. |++.+.+++.+++
T Consensus 177 aa~a~~a~~~~ip~~~ir~ISD~a~~~~~~~~~~~~~~aa~~~a~~v~~~l 227 (231)
T 3dp9_A 177 SAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFLPLAAKSSSAMVLKMV 227 (231)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEEecCCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 45566677789999999864331 1111223443 5556666666655
No 26
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A*
Probab=22.91 E-value=1.7e+02 Score=23.46 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCEEEEeeecC--CCCCC-CCChH----HHHHHHHHHHHHHHHH
Q 028953 14 TVAGAREAFFHGVPSVSISYDWV--GGKSN-VNDYT----LAAEACLPIINAILAE 62 (201)
Q Consensus 14 TVgAA~EA~l~GiPAIA~S~~~~--~~~~~-~~~~~----~aa~~~~~li~~l~~~ 62 (201)
+.+-|.-|..+|+|.+++..-.+ ..+.. ...|. .+++.+.+++.++++.
T Consensus 203 ~aa~a~va~~~gip~~~Ir~ISD~a~~~~~s~~~~~~~~~~aa~~~~~~l~~~l~~ 258 (267)
T 2h8g_A 203 GAAVAYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLTVVTAALEGTATKVINF 258 (267)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEEETTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEEEECccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667789999999986432 21111 12343 3445555555555544
No 27
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=22.84 E-value=37 Score=27.55 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=19.2
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEee
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
|+-|| =...+||..+|+|.|+...
T Consensus 259 v~~sg-~~~~~EAma~G~Pvi~~~~ 282 (364)
T 1f0k_A 259 VCRSG-ALTVSEIAAAGLPALFVPF 282 (364)
T ss_dssp EECCC-HHHHHHHHHHTCCEEECCC
T ss_pred EECCc-hHHHHHHHHhCCCEEEeeC
Confidence 34477 5667999999999999865
No 28
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A*
Probab=21.77 E-value=1.5e+02 Score=22.87 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCC-CCCCCCChHH----HHHHHHHHHHHHH
Q 028953 14 TVAGAREAFFHGVPSVSISYDWVG-GKSNVNDYTL----AAEACLPIINAIL 60 (201)
Q Consensus 14 TVgAA~EA~l~GiPAIA~S~~~~~-~~~~~~~~~~----aa~~~~~li~~l~ 60 (201)
|.+-|.-|..+|+|.+++..-.+. +.....+|+. +++.+.+++.+++
T Consensus 176 ~aa~a~~a~~~gi~~~~ir~IsD~a~~~~~~~~~~~~~~a~~~~~~~~~~~l 227 (230)
T 3nm6_B 176 GASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMV 227 (230)
T ss_dssp HHHHHHHHHHHTCCEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEEecCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 345566677799999999864331 1111223443 4444455555544
No 29
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A*
Probab=21.39 E-value=1.5e+02 Score=22.73 Aligned_cols=22 Identities=23% Similarity=0.061 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCEEEEeeec
Q 028953 14 TVAGAREAFFHGVPSVSISYDW 35 (201)
Q Consensus 14 TVgAA~EA~l~GiPAIA~S~~~ 35 (201)
+.+-|.-|..+|+|.+++..-.
T Consensus 175 ~aa~~~~a~~~~~~~~~ir~Is 196 (230)
T 1zos_A 175 GAAIAQAAHTLNLPVLVIRAMS 196 (230)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEEec
Confidence 3455666778999999998643
No 30
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=21.10 E-value=30 Score=28.58 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.4
Q ss_pred ccchHHHHHHHHHHHcCCCEEEEee
Q 028953 9 VVYSGTVAGAREAFFHGVPSVSISY 33 (201)
Q Consensus 9 v~ySGTVgAA~EA~l~GiPAIA~S~ 33 (201)
|..+|. +..+||+.+|+|.|++-.
T Consensus 284 v~~~G~-~t~~Ea~~~G~P~v~~p~ 307 (384)
T 2p6p_A 284 VHHAGG-VSTLTGLSAGVPQLLIPK 307 (384)
T ss_dssp EECSCT-THHHHHHHTTCCEEECCC
T ss_pred EeCCcH-HHHHHHHHhCCCEEEccC
Confidence 333453 567999999999999975
No 31
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus}
Probab=20.23 E-value=1.6e+02 Score=22.52 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCCEEEEeeec
Q 028953 15 VAGAREAFFHGVPSVSISYDW 35 (201)
Q Consensus 15 VgAA~EA~l~GiPAIA~S~~~ 35 (201)
.+-|.-|..+|+|.+++..-.
T Consensus 177 a~~~~~a~~~~~~~~~ir~Is 197 (230)
T 3bl6_A 177 TAIAQTCYQFNVPFVVVRAVS 197 (230)
T ss_dssp HHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEec
Confidence 445556667899999998643
No 32
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} SCOP: c.56.2.1 PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3nsr_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A ...
Probab=20.20 E-value=1.3e+02 Score=23.99 Aligned_cols=45 Identities=7% Similarity=-0.037 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCC--------CCCCCCChHHHHHHHHHHHHHH
Q 028953 15 VAGAREAFFHGVPSVSISYDWVG--------GKSNVNDYTLAAEACLPIINAI 59 (201)
Q Consensus 15 VgAA~EA~l~GiPAIA~S~~~~~--------~~~~~~~~~~aa~~~~~li~~l 59 (201)
.+-|.-|..+|+|+.+++.-... .+.....++.+.+.+.+.++.|
T Consensus 200 aa~a~va~~~gi~~~~i~~v~~~R~~sd~~~~~~~~~~~~~~~~~~le~~~~l 252 (253)
T 3ddo_A 200 ATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESHAVKIVVEAARRL 252 (253)
T ss_dssp HHHHHHHHTTTCEEEEEEEECCCTTC---------CCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEEEEEeccccccCChhHHHHHHHHHHHHHHHHHHHh
Confidence 45566778899999999864221 1111234667778777776654
Done!