BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028954
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H1Z|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|B Chain B, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|C Chain C, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|D Chain D, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|E Chain E, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|F Chain F, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|G Chain G, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|H Chain H, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
Length = 412
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 142 KALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKF 191
K LG ++R DRI A I+GL +D AK +LA W AK KF
Sbjct: 167 KLLGGQRR---DRIAA----YISGLPEDTRAKRAELAAAWQAKGFSSFKF 209
>pdb|2PPG|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
pdb|2PPG|B Chain B, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
pdb|2PPG|C Chain C, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
pdb|2PPG|D Chain D, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
Length = 399
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 142 KALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKF 191
K LG ++R DRI A I+GL +D AK +LA W AK KF
Sbjct: 146 KLLGGQRR---DRIAA----YISGLPEDTRAKRAELAAAWQAKGFSSFKF 188
>pdb|1A7E|A Chain A, Hydroxomet Myohemerythrin From Themiste Zostericola
Length = 118
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 154 RIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKF 191
++ ++ E+I GL +AK ++W+ H++ T F
Sbjct: 75 KMHKDFLEKIGGLSAPVDAKNVDYCKEWNVNHIKGTDF 112
>pdb|2MHR|A Chain A, Structure Of Myohemerythrin In The Azidomet State At
1.7(Slash)1.3 Angstroms Resolution
Length = 118
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 154 RIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKF 191
++ ++ E+I GL +AK ++W H++ T F
Sbjct: 75 KMHKDFLEKIGGLSAPVDAKNVDYCKEWLVNHIKGTDF 112
>pdb|2NSF|A Chain A, Crystal Structure Of The Mycothiol-Dependent
Maleylpyruvate Isomerase
Length = 261
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 147 EQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHL 186
E+R TL R+ + + L +AE E L E W+ HL
Sbjct: 30 EERLTLARLGTSHYSRQLSLVDNAEFGEHSLLEGWTRSHL 69
>pdb|1A7D|A Chain A, Chloromet Myohemerythrin From Themiste Zostericola
Length = 118
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 154 RIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKF 191
++ ++ E+I GL +AK ++W H++ T F
Sbjct: 75 KMHKDFLEKIGGLSAPVDAKNVDYCKEWLVNHIKGTDF 112
>pdb|2NSG|A Chain A, Crystal Structure Of The Mycothiol-Dependent
Maleylpyruvate Isomerase H52a Mutant
Length = 261
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 147 EQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHL 186
E+R TL R+ + + L +AE E L E W+ HL
Sbjct: 30 EERLTLARLGTSHYSRQLSLVDNAEFGEHSLLEGWTRSHL 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,018,038
Number of Sequences: 62578
Number of extensions: 165560
Number of successful extensions: 568
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 49
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)