Query 028954
Match_columns 201
No_of_seqs 53 out of 55
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 05:09:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04696 Pinin_SDK_memA: pinin 95.1 0.22 4.7E-06 39.9 8.9 30 164-193 71-101 (131)
2 PF08514 STAG: STAG domain ; 88.9 0.93 2E-05 35.6 4.9 44 85-142 72-117 (118)
3 smart00502 BBC B-Box C-termina 85.4 12 0.00025 27.1 11.2 54 126-179 36-90 (127)
4 PF10186 Atg14: UV radiation r 83.8 22 0.00048 29.8 10.8 16 89-104 24-39 (302)
5 KOG3756 Pinin (desmosome-assoc 81.7 15 0.00032 34.8 9.7 82 85-193 147-233 (340)
6 TIGR01541 tape_meas_lam_C phag 80.1 36 0.00078 31.4 11.6 27 146-172 82-108 (332)
7 PF13801 Metal_resist: Heavy-m 80.1 4.4 9.6E-05 28.8 4.7 62 113-178 33-94 (125)
8 PRK02224 chromosome segregatio 79.1 60 0.0013 32.2 13.5 12 159-170 542-553 (880)
9 PF05700 BCAS2: Breast carcino 77.6 34 0.00073 29.3 10.1 61 99-164 129-189 (221)
10 PRK06228 F0F1 ATP synthase sub 77.0 6.6 0.00014 31.6 5.3 32 131-169 100-131 (131)
11 TIGR01069 mutS2 MutS2 family p 75.5 30 0.00064 35.2 10.5 46 135-180 546-591 (771)
12 PF09731 Mitofilin: Mitochondr 74.5 81 0.0018 30.0 14.7 47 142-188 310-357 (582)
13 PF03179 V-ATPase_G: Vacuolar 71.1 41 0.0009 25.2 9.5 46 133-178 49-94 (105)
14 PF12128 DUF3584: Protein of u 71.0 1.5E+02 0.0032 31.5 14.5 94 88-181 348-444 (1201)
15 PF03179 V-ATPase_G: Vacuolar 70.4 43 0.00093 25.1 8.5 69 125-193 26-98 (105)
16 PF08703 PLC-beta_C: PLC-beta 69.8 18 0.00038 31.4 6.5 42 126-167 120-162 (185)
17 KOG3654 Uncharacterized CH dom 68.0 14 0.0003 37.4 6.1 43 117-160 409-451 (708)
18 PRK08476 F0F1 ATP synthase sub 67.5 49 0.0011 26.4 8.2 40 153-192 84-123 (141)
19 PRK11637 AmiB activator; Provi 67.5 1E+02 0.0023 28.4 13.1 19 151-169 237-255 (428)
20 KOG0250 DNA repair protein RAD 64.9 1.8E+02 0.0038 31.6 13.6 44 125-169 309-352 (1074)
21 TIGR01069 mutS2 MutS2 family p 62.1 1.4E+02 0.003 30.5 12.0 74 87-168 517-590 (771)
22 PF05266 DUF724: Protein of un 61.9 63 0.0014 27.6 8.3 66 111-177 108-175 (190)
23 KOG2412 Nuclear-export-signal 61.4 41 0.00089 34.0 8.0 22 159-180 267-288 (591)
24 PF12128 DUF3584: Protein of u 59.1 2E+02 0.0044 30.5 12.9 27 153-179 724-750 (1201)
25 COG4942 Membrane-bound metallo 57.3 1.9E+02 0.0042 28.1 13.2 95 85-179 143-242 (420)
26 PHA02675 ORF104 fusion protein 56.9 14 0.0003 29.1 3.2 36 87-141 46-81 (90)
27 PRK00409 recombination and DNA 56.9 1.2E+02 0.0026 30.9 10.6 35 137-171 553-587 (782)
28 PRK00409 recombination and DNA 56.7 1.5E+02 0.0032 30.3 11.2 30 139-168 566-595 (782)
29 PF07227 DUF1423: Protein of u 55.5 52 0.0011 32.2 7.5 28 152-179 391-419 (446)
30 PRK10884 SH3 domain-containing 54.9 1.2E+02 0.0027 26.2 9.0 66 114-187 94-172 (206)
31 PRK14471 F0F1 ATP synthase sub 53.9 1.1E+02 0.0025 24.4 8.6 15 108-122 55-69 (164)
32 PF15188 CCDC-167: Coiled-coil 53.6 18 0.00039 27.9 3.4 21 148-168 44-64 (85)
33 PRK11637 AmiB activator; Provi 51.6 2E+02 0.0043 26.6 10.8 42 138-179 207-251 (428)
34 PLN02372 violaxanthin de-epoxi 50.8 2E+02 0.0043 28.5 10.5 72 94-172 367-443 (455)
35 PF15070 GOLGA2L5: Putative go 50.6 95 0.0021 31.1 8.6 60 116-177 79-138 (617)
36 PF07352 Phage_Mu_Gam: Bacteri 50.5 1.2E+02 0.0025 24.3 7.7 36 149-185 27-62 (149)
37 PF12737 Mating_C: C-terminal 50.2 16 0.00034 35.0 3.1 24 123-147 394-417 (419)
38 PF04719 TAFII28: hTAFII28-lik 50.2 17 0.00036 28.1 2.7 32 84-115 55-90 (90)
39 KOG2891 Surface glycoprotein [ 49.8 2.5E+02 0.0053 27.1 11.8 103 82-192 265-383 (445)
40 PRK13824 replication initiatio 48.4 1E+02 0.0022 29.3 8.0 19 152-170 195-213 (404)
41 PF11166 DUF2951: Protein of u 48.3 87 0.0019 25.1 6.5 55 108-175 6-60 (98)
42 PF03938 OmpH: Outer membrane 48.1 1.3E+02 0.0028 23.4 9.7 44 150-196 83-126 (158)
43 PRK11098 microcin B17 transpor 47.9 25 0.00055 33.4 4.1 24 153-176 276-299 (409)
44 smart00502 BBC B-Box C-termina 47.9 1E+02 0.0022 22.2 9.9 17 163-179 63-79 (127)
45 PF09726 Macoilin: Transmembra 47.8 65 0.0014 32.7 7.1 20 158-177 549-568 (697)
46 PRK11519 tyrosine kinase; Prov 47.5 85 0.0018 31.2 7.7 73 113-195 267-348 (719)
47 PF15397 DUF4618: Domain of un 46.6 2.3E+02 0.005 25.8 12.3 92 95-186 63-174 (258)
48 KOG1924 RhoA GTPase effector D 46.6 72 0.0016 34.1 7.3 19 4-22 516-535 (1102)
49 TIGR01147 V_ATP_synt_G vacuola 46.6 1.5E+02 0.0033 23.7 8.3 62 131-192 34-99 (113)
50 PF14357 DUF4404: Domain of un 45.7 64 0.0014 24.2 5.2 52 143-195 18-76 (85)
51 PF09726 Macoilin: Transmembra 45.6 3.5E+02 0.0076 27.7 11.8 8 119-126 508-515 (697)
52 PF04795 PAPA-1: PAPA-1-like c 45.2 28 0.00061 26.3 3.2 27 123-155 6-32 (89)
53 PF05178 Kri1: KRI1-like famil 44.7 51 0.0011 25.7 4.7 32 118-149 7-38 (101)
54 PF00261 Tropomyosin: Tropomyo 44.1 2.1E+02 0.0045 24.6 13.5 59 135-195 172-230 (237)
55 PF06886 TPX2: Targeting prote 44.1 88 0.0019 22.2 5.4 36 113-148 15-50 (57)
56 PF01486 K-box: K-box region; 43.6 50 0.0011 24.7 4.4 35 114-148 50-84 (100)
57 CHL00118 atpG ATP synthase CF0 43.5 1.7E+02 0.0037 23.5 8.6 14 109-122 70-83 (156)
58 PF12072 DUF3552: Domain of un 43.5 2E+02 0.0043 24.2 9.8 52 132-183 120-187 (201)
59 KOG4364 Chromatin assembly fac 43.2 1.3E+02 0.0028 31.5 8.4 76 118-195 306-382 (811)
60 PF07352 Phage_Mu_Gam: Bacteri 42.3 92 0.002 25.0 5.9 32 151-182 18-49 (149)
61 smart00830 CM_2 Chorismate mut 42.1 90 0.0019 21.6 5.2 54 131-186 1-54 (79)
62 KOG4593 Mitotic checkpoint pro 42.1 3.2E+02 0.007 28.5 10.9 61 115-176 78-141 (716)
63 cd07667 BAR_SNX30 The Bin/Amph 41.7 2.6E+02 0.0057 25.1 9.5 49 128-183 170-218 (240)
64 PRK09841 cryptic autophosphory 41.4 3.3E+02 0.0072 27.2 10.8 23 151-177 364-386 (726)
65 KOG0163 Myosin class VI heavy 41.3 2.6E+02 0.0056 30.3 10.2 11 154-164 980-990 (1259)
66 PF04111 APG6: Autophagy prote 41.2 2.2E+02 0.0048 25.8 8.9 23 160-182 77-99 (314)
67 TIGR03185 DNA_S_dndD DNA sulfu 41.1 3.2E+02 0.007 26.8 10.5 60 110-170 402-465 (650)
68 PF03791 KNOX2: KNOX2 domain ; 40.9 72 0.0016 22.6 4.5 34 91-124 16-49 (52)
69 KOG2391 Vacuolar sorting prote 40.8 3.4E+02 0.0074 26.2 12.0 16 162-177 261-276 (365)
70 PF07227 DUF1423: Protein of u 40.2 80 0.0017 31.0 6.2 57 131-188 349-405 (446)
71 COG2825 HlpA Outer membrane pr 39.8 2.3E+02 0.0049 23.8 9.4 63 116-178 43-121 (170)
72 PLN00180 NDF6 (NDH-dependent f 39.8 39 0.00085 29.4 3.6 38 113-150 139-177 (180)
73 PF05300 DUF737: Protein of un 39.6 65 0.0014 27.9 5.0 18 150-167 144-161 (187)
74 KOG4643 Uncharacterized coiled 39.6 80 0.0017 34.3 6.4 56 115-170 186-245 (1195)
75 cd07653 F-BAR_CIP4-like The F- 38.3 2.4E+02 0.0052 23.7 10.7 83 85-167 91-192 (251)
76 KOG0981 DNA topoisomerase I [R 38.2 59 0.0013 33.5 5.1 106 85-197 562-697 (759)
77 PF09744 Jnk-SapK_ap_N: JNK_SA 38.2 2.4E+02 0.0052 23.6 9.5 18 116-133 60-77 (158)
78 PRK02224 chromosome segregatio 38.1 4.2E+02 0.0091 26.4 13.4 37 87-124 155-198 (880)
79 PF07926 TPR_MLP1_2: TPR/MLP1/ 37.9 2E+02 0.0043 22.6 7.4 17 156-172 19-35 (132)
80 PF00170 bZIP_1: bZIP transcri 37.4 1.4E+02 0.003 20.6 7.2 55 112-167 4-60 (64)
81 PF09731 Mitofilin: Mitochondr 37.2 3.7E+02 0.008 25.7 10.0 12 111-122 256-267 (582)
82 PRK13729 conjugal transfer pil 37.1 74 0.0016 31.4 5.5 14 114-127 77-90 (475)
83 PF12808 Mto2_bdg: Micro-tubul 36.7 83 0.0018 22.4 4.3 17 114-130 5-21 (52)
84 PRK00106 hypothetical protein; 36.7 3.2E+02 0.007 27.1 9.8 29 154-182 177-205 (535)
85 PF07946 DUF1682: Protein of u 35.7 88 0.0019 28.2 5.4 18 8-25 146-164 (321)
86 cd07648 F-BAR_FCHO The F-BAR ( 35.6 2.8E+02 0.0062 23.7 12.6 15 153-167 160-174 (261)
87 PF09304 Cortex-I_coil: Cortex 35.6 2.4E+02 0.0052 22.9 10.2 68 103-172 6-76 (107)
88 PF10211 Ax_dynein_light: Axon 35.3 2.8E+02 0.006 23.5 10.1 38 134-172 122-159 (189)
89 TIGR03142 cytochro_ccmI cytoch 35.1 24 0.00052 27.3 1.5 15 157-171 39-53 (117)
90 PF00816 Histone_HNS: H-NS his 35.0 61 0.0013 23.8 3.6 28 116-143 8-35 (93)
91 KOG4404 Tandem pore domain K+ 34.9 40 0.00087 32.1 3.2 23 121-143 29-51 (350)
92 PF14712 Snapin_Pallidin: Snap 34.5 1.8E+02 0.0039 21.0 7.9 35 133-168 15-49 (92)
93 PF14235 DUF4337: Domain of un 34.3 1.9E+02 0.0042 24.0 6.8 44 149-193 68-111 (157)
94 PRK13453 F0F1 ATP synthase sub 33.9 2.6E+02 0.0057 22.8 8.6 18 154-171 122-139 (173)
95 PF08663 HalX: HalX domain; I 33.5 61 0.0013 23.9 3.4 40 121-160 22-65 (71)
96 PF10779 XhlA: Haemolysin XhlA 33.1 1.2E+02 0.0027 21.6 4.8 40 130-170 4-43 (71)
97 PF10253 PRCC: Mitotic checkpo 31.9 51 0.0011 26.7 3.0 30 155-184 140-169 (182)
98 COG1340 Uncharacterized archae 31.8 3.5E+02 0.0075 25.3 8.6 17 131-147 157-173 (294)
99 TIGR03007 pepcterm_ChnLen poly 31.4 1.3E+02 0.0029 27.8 5.9 58 114-176 162-219 (498)
100 PF10376 Mei5: Double-strand r 30.6 3.8E+02 0.0082 23.6 9.2 13 187-199 203-215 (221)
101 PRK04778 septation ring format 30.6 5.1E+02 0.011 25.2 10.3 86 82-168 345-432 (569)
102 PRK10203 hypothetical protein; 30.6 2E+02 0.0044 23.4 6.2 56 104-164 59-116 (122)
103 KOG0249 LAR-interacting protei 30.6 1.4E+02 0.0029 31.7 6.3 65 107-171 157-240 (916)
104 PF10211 Ax_dynein_light: Axon 30.2 3.4E+02 0.0073 22.9 10.0 79 114-194 96-177 (189)
105 PHA03046 Hypothetical protein; 29.9 79 0.0017 26.8 3.8 25 86-124 99-123 (142)
106 cd07607 BAR_SH3P_plant The Bin 29.8 3.1E+02 0.0068 24.6 7.7 57 133-196 151-207 (209)
107 PF13935 Ead_Ea22: Ead/Ea22-li 29.6 2.9E+02 0.0064 22.1 9.2 11 91-101 70-80 (139)
108 PRK13729 conjugal transfer pil 29.3 1.3E+02 0.0028 29.7 5.8 45 132-177 76-120 (475)
109 PF01099 Uteroglobin: Uteroglo 29.3 97 0.0021 21.9 3.7 36 143-178 3-38 (67)
110 TIGR02894 DNA_bind_RsfA transc 28.4 2.2E+02 0.0048 24.5 6.3 32 133-168 119-150 (161)
111 smart00307 ILWEQ I/LWEQ domain 27.9 4.2E+02 0.009 23.3 9.0 79 84-169 116-195 (200)
112 smart00338 BRLZ basic region l 26.9 2.1E+02 0.0046 19.6 5.0 34 117-150 9-44 (65)
113 KOG3859 Septins (P-loop GTPase 26.7 4.1E+02 0.0089 25.7 8.3 64 91-154 333-399 (406)
114 PF15346 ARGLU: Arginine and g 26.6 3.6E+02 0.0079 22.8 7.2 8 116-123 22-29 (149)
115 KOG4005 Transcription factor X 26.6 2.1E+02 0.0046 26.6 6.3 20 129-148 87-106 (292)
116 PRK03578 hscB co-chaperone Hsc 25.8 2E+02 0.0043 24.1 5.6 25 91-115 53-77 (176)
117 PRK09841 cryptic autophosphory 25.1 3.4E+02 0.0073 27.2 7.8 78 107-194 260-347 (726)
118 TIGR03007 pepcterm_ChnLen poly 25.0 5.6E+02 0.012 23.7 10.0 14 163-176 357-370 (498)
119 PF10153 DUF2361: Uncharacteri 24.9 2.2E+02 0.0048 22.9 5.4 38 158-195 25-62 (114)
120 PRK11546 zraP zinc resistance 24.8 4.2E+02 0.009 22.2 8.3 69 122-190 44-118 (143)
121 PF05761 5_nucleotid: 5' nucle 24.4 1.4E+02 0.0031 28.7 5.0 43 151-195 346-388 (448)
122 PF01025 GrpE: GrpE; InterPro 24.4 3.4E+02 0.0074 21.4 6.5 23 175-197 88-110 (165)
123 PF12718 Tropomyosin_1: Tropom 24.2 1.4E+02 0.003 24.3 4.3 45 132-176 14-71 (143)
124 PRK04863 mukB cell division pr 23.9 8.8E+02 0.019 27.2 11.2 80 114-195 322-409 (1486)
125 PF07106 TBPIP: Tat binding pr 23.8 3.9E+02 0.0084 21.5 8.1 23 127-149 81-103 (169)
126 PRK11519 tyrosine kinase; Prov 23.6 7.5E+02 0.016 24.7 10.0 12 164-175 373-384 (719)
127 PF11348 DUF3150: Protein of u 23.5 3E+02 0.0066 24.4 6.6 49 131-194 80-128 (257)
128 PRK11029 FtsH protease regulat 23.4 6E+02 0.013 23.5 10.1 76 118-194 223-299 (334)
129 KOG0018 Structural maintenance 23.3 8.9E+02 0.019 26.8 10.8 101 92-196 342-475 (1141)
130 PRK13460 F0F1 ATP synthase sub 23.3 4.1E+02 0.0089 21.6 8.6 18 106-123 61-78 (173)
131 PF09486 HrpB7: Bacterial type 23.2 4.6E+02 0.01 22.1 7.9 45 129-174 97-141 (158)
132 PF13654 AAA_32: AAA domain; P 22.8 28 0.00061 33.8 0.0 65 131-196 174-246 (509)
133 PF00769 ERM: Ezrin/radixin/mo 22.8 5.2E+02 0.011 22.7 10.5 19 159-177 108-126 (246)
134 PF04949 Transcrip_act: Transc 22.8 2.1E+02 0.0045 24.7 5.1 24 153-177 91-114 (159)
135 KOG3119 Basic region leucine z 22.7 1.8E+02 0.0038 26.0 4.9 37 130-167 213-249 (269)
136 PF07889 DUF1664: Protein of u 22.6 4.3E+02 0.0093 21.6 9.0 33 92-124 47-79 (126)
137 PTZ00464 SNF-7-like protein; P 22.5 5.2E+02 0.011 22.5 8.0 36 125-168 18-53 (211)
138 TIGR02680 conserved hypothetic 22.2 1.1E+03 0.023 25.9 13.7 107 85-194 266-372 (1353)
139 PF02151 UVR: UvrB/uvrC motif; 22.1 1.7E+02 0.0036 18.5 3.5 11 157-167 24-34 (36)
140 TIGR03545 conserved hypothetic 22.1 3.2E+02 0.0068 27.2 6.9 45 93-147 162-206 (555)
141 PF07106 TBPIP: Tat binding pr 22.0 4.3E+02 0.0092 21.3 7.2 60 87-146 74-137 (169)
142 COG3678 CpxP P pilus assembly/ 21.9 4.8E+02 0.01 21.9 8.6 27 138-164 99-128 (160)
143 PF07888 CALCOCO1: Calcium bin 21.8 7.9E+02 0.017 24.9 9.6 77 89-177 372-454 (546)
144 PRK11546 zraP zinc resistance 21.6 1.6E+02 0.0035 24.6 4.2 40 143-182 43-82 (143)
145 KOG3091 Nuclear pore complex, 21.3 2.6E+02 0.0056 28.0 6.2 60 101-166 312-388 (508)
146 PF07743 HSCB_C: HSCB C-termin 21.2 3E+02 0.0066 19.3 5.2 24 130-153 13-41 (78)
147 PF14193 DUF4315: Domain of un 21.1 1.5E+02 0.0032 22.6 3.6 26 115-145 3-28 (83)
148 PF00804 Syntaxin: Syntaxin; 21.1 3E+02 0.0064 19.2 6.3 44 127-170 9-54 (103)
149 KOG4348 Adaptor protein CMS/SE 21.0 8.7E+02 0.019 24.8 9.6 46 86-135 570-616 (627)
150 KOG1029 Endocytic adaptor prot 20.7 1.1E+03 0.024 25.7 13.9 109 87-196 488-609 (1118)
151 PTZ00121 MAEBL; Provisional 20.6 1.3E+03 0.027 27.2 11.4 13 92-104 1125-1137(2084)
152 PF06476 DUF1090: Protein of u 20.6 2.5E+02 0.0054 22.3 4.9 14 112-125 42-55 (115)
153 PF13019 Telomere_Sde2: Telome 20.5 95 0.0021 26.5 2.7 47 91-140 111-159 (162)
154 PF06472 ABC_membrane_2: ABC t 20.3 81 0.0018 27.4 2.3 20 153-172 202-221 (281)
155 PF12240 Angiomotin_C: Angiomo 20.2 6.3E+02 0.014 22.6 8.0 54 127-180 18-90 (205)
156 KOG2265 Nuclear distribution p 20.2 1E+02 0.0022 27.0 2.8 55 133-197 116-170 (179)
157 COG1422 Predicted membrane pro 20.1 2.9E+02 0.0062 24.6 5.6 19 128-146 75-93 (201)
No 1
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=95.09 E-value=0.22 Score=39.88 Aligned_cols=30 Identities=30% Similarity=0.655 Sum_probs=22.6
Q ss_pred hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 028954 164 AGLRK-DAEAKEQKLAEQWSAKHLRLTKFLE 193 (201)
Q Consensus 164 a~LrR-DAE~KEqKlaEqW~~Kh~rL~kfle 193 (201)
..||+ +....+.++.+.|..++..|++||-
T Consensus 71 ~elr~~e~~~~~~~~~~~~~~~~~~l~~fi~ 101 (131)
T PF04696_consen 71 RELRRLEQKKEEERLMEIWHEHYLALANFIR 101 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34443 4555667788999999999999975
No 2
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=88.89 E-value=0.93 Score=35.64 Aligned_cols=44 Identities=34% Similarity=0.625 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHH--HHHHHHHHHH
Q 028954 85 LLVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRD--KMEEIEAKVK 142 (201)
Q Consensus 85 ~~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRRE--KmEEiEaKik 142 (201)
.+|..|++.+.+|.+ .+.....||+.||..+++. ++|+++.+|+
T Consensus 72 ~i~t~L~~v~~~l~~--------------~~~~~~rQl~aE~~k~~~~~~r~~~l~~~i~ 117 (118)
T PF08514_consen 72 KIMTSLCDVAKSLSE--------------ELEKTQRQLEAEKKKKRKNKSRLEELEQKIK 117 (118)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 577889999998887 3556778999999876654 6899999886
No 3
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=85.44 E-value=12 Score=27.12 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=43.6
Q ss_pred HHhhHHHHH-HHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 028954 126 KACQRRDKM-EEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAE 179 (201)
Q Consensus 126 Ka~rRREKm-EEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaE 179 (201)
++...|+.+ .+|+.=+..|.+++...|++|+.++++.+..|..--+.-++.+..
T Consensus 36 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 36 NAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555 778999999999999999999999999999988777776666654
No 4
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.75 E-value=22 Score=29.77 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhhHHH
Q 028954 89 ELMECCRELKEGHRAW 104 (201)
Q Consensus 89 eLvecCrELEEG~raw 104 (201)
++-.+-.++-+.+..+
T Consensus 24 ~~~~~l~~~~~~~~~l 39 (302)
T PF10186_consen 24 ELRSELQQLKEENEEL 39 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 5
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=81.65 E-value=15 Score=34.77 Aligned_cols=82 Identities=27% Similarity=0.453 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHH----HHH
Q 028954 85 LLVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEA----EYR 160 (201)
Q Consensus 85 ~~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~----eYr 160 (201)
.+||+|-.+|+|= .++..|-.|-.|||-|+--=++++...|..-+. +-|
T Consensus 147 ~LlGTL~KFkqE~---------------------------kr~t~rq~KraEieqKlEeq~~eE~e~l~~qe~~l~~~rr 199 (340)
T KOG3756|consen 147 LLLGTLQKFKQES---------------------------KRATERQVKRAEIEQKLEEQAEEEREQLEKQERELLEERR 199 (340)
T ss_pred HHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888753 333334444455555555444444444433322 234
Q ss_pred HHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHH
Q 028954 161 EQIAGLRKDAE-AKEQKLAEQWSAKHLRLTKFLE 193 (201)
Q Consensus 161 Eqla~LrRDAE-~KEqKlaEqW~~Kh~rL~kfle 193 (201)
.+.-.||+=+- .-++|+.++|..-..++..|+.
T Consensus 200 ~r~~ElR~l~~kka~~q~~e~w~~~~kk~s~~IR 233 (340)
T KOG3756|consen 200 ARQTELRLLEQKKALAQLFEEWNEHNKKISNYIR 233 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44455554333 3367899999998888888764
No 6
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=80.14 E-value=36 Score=31.37 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=21.3
Q ss_pred HHHhhhhhhHHHHHHHHHhhhhhhHHH
Q 028954 146 DEQRATLDRIEAEYREQIAGLRKDAEA 172 (201)
Q Consensus 146 eEq~a~l~riE~eYrEqla~LrRDAE~ 172 (201)
.+....+-.|+.+|.+|+..|+++.+.
T Consensus 82 ~~r~~~~~~i~~~~~~q~~~l~~~~~~ 108 (332)
T TIGR01541 82 RERLDARLQIDRTFRKQQRDLNKAMTA 108 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345566778999999999999998553
No 7
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=80.09 E-value=4.4 Score=28.84 Aligned_cols=62 Identities=29% Similarity=0.326 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 028954 113 WRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLA 178 (201)
Q Consensus 113 WRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKla 178 (201)
+....-.++|-.|...+-|+-+++.-.+++.+|.+-.+ ...++++.+..=.=|.+.=++-+.
T Consensus 33 ~~~~~~~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~----~r~~l~~ll~~~~~D~~~i~a~~~ 94 (125)
T PF13801_consen 33 HPMLADMLNLTPEQQAKLRALMDEFRQEMRALRQELRA----ARQELRALLAAPPPDEAAIEALLE 94 (125)
T ss_dssp HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCSSS-HHHHHHHHH
T ss_pred chhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444556777777777777777777777777655433 333444444443334443333333
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=79.09 E-value=60 Score=32.19 Aligned_cols=12 Identities=42% Similarity=0.548 Sum_probs=4.9
Q ss_pred HHHHHhhhhhhH
Q 028954 159 YREQIAGLRKDA 170 (201)
Q Consensus 159 YrEqla~LrRDA 170 (201)
+++++..|+-++
T Consensus 542 l~~e~~~l~~~~ 553 (880)
T PRK02224 542 LRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 9
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=77.58 E-value=34 Score=29.29 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=44.4
Q ss_pred HhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHh
Q 028954 99 EGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIA 164 (201)
Q Consensus 99 EG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla 164 (201)
=|..+|..|- +.|..+..+||.+... .|+.+++|-.+=|.-..+-..-|..+|..|.+.+.
T Consensus 129 ~g~naW~~~n----~~Le~~~~~le~~l~~-~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~ 189 (221)
T PF05700_consen 129 YGENAWLIHN----EQLEAMLKRLEKELAK-LKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVS 189 (221)
T ss_pred HhHHHHHHHH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4667777776 4566666666666554 45778888888888888888888888888887654
No 10
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=76.99 E-value=6.6 Score=31.65 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhh
Q 028954 131 RDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKD 169 (201)
Q Consensus 131 REKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRD 169 (201)
..++|+-+..+|+ .+.|||++...|+-.|+||
T Consensus 100 ~~~~~~~~~~~r~-------~~~~le~~~~~~~~~~~~~ 131 (131)
T PRK06228 100 FLTLDERERSVRS-------ALAKLESGFIRRFMELKHD 131 (131)
T ss_pred HHhhhhhHHHHHH-------HHHHHHHHHHHHHHHhcCC
Confidence 4455555555544 8999999999999999998
No 11
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.51 E-value=30 Score=35.15 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028954 135 EEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQ 180 (201)
Q Consensus 135 EEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEq 180 (201)
++.|.+.+.|+++....+.+...+|++.+...|+.++....+|-+.
T Consensus 546 ~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~~ 591 (771)
T TIGR01069 546 KELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEK 591 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466667777777777777778888888888887777666555543
No 12
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=74.52 E-value=81 Score=30.05 Aligned_cols=47 Identities=23% Similarity=0.476 Sum_probs=33.6
Q ss_pred HhhhHHHhhhhhhHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHH
Q 028954 142 KALGDEQRATLDRIEAEYREQIA-GLRKDAEAKEQKLAEQWSAKHLRL 188 (201)
Q Consensus 142 kaLreEq~a~l~riE~eYrEqla-~LrRDAE~KEqKlaEqW~~Kh~rL 188 (201)
+.++.+-......++..|.++|. .|+|-++.=+++|.+.=...-..|
T Consensus 310 ~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~ 357 (582)
T PF09731_consen 310 EELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIEL 357 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777888888888988887 788877777777766644443333
No 13
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=71.06 E-value=41 Score=25.19 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 028954 133 KMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLA 178 (201)
Q Consensus 133 KmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKla 178 (201)
+-+++.........+.......|+.++.+++..|+.++..+-.+.+
T Consensus 49 ~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~vv 94 (105)
T PF03179_consen 49 AEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEIKKSASKNKDKVV 94 (105)
T ss_dssp HHHHHH-S------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3345666666666666667777777777777777777776655544
No 14
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=70.96 E-value=1.5e+02 Score=31.51 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhh---HHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHh
Q 028954 88 SELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQ---RRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIA 164 (201)
Q Consensus 88 ~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~r---RREKmEEiEaKikaLreEq~a~l~riE~eYrEqla 164 (201)
...++.--++.........|+..-+=...-++.+.+.-+..- .-...+.+.+++..+|++.....++++.+|..+..
T Consensus 348 ~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~ 427 (1201)
T PF12128_consen 348 IARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQ 427 (1201)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666677777766666666665555444322 22345667788888899988889999999999999
Q ss_pred hhhhhHHHHHHHHHHHH
Q 028954 165 GLRKDAEAKEQKLAEQW 181 (201)
Q Consensus 165 ~LrRDAE~KEqKlaEqW 181 (201)
.+|...+...+++.++=
T Consensus 428 ~~~~~~~~~~~~~~~~~ 444 (1201)
T PF12128_consen 428 ELRQQSQEQLEELQEQR 444 (1201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99887777777766553
No 15
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=70.40 E-value=43 Score=25.10 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=45.6
Q ss_pred HHHhhHHHHHHHHHHHHHhhhHHHhhhhh----hHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028954 125 EKACQRRDKMEEIEAKVKALGDEQRATLD----RIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLE 193 (201)
Q Consensus 125 EKa~rRREKmEEiEaKikaLreEq~a~l~----riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfle 193 (201)
++..+.++..+|.+..|...|.+.-..+. .++.++......|.++.+.+=++|-..-..+....+++|=
T Consensus 26 ~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~vv~~ll 98 (105)
T PF03179_consen 26 EREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEIKKSASKNKDKVVDMLL 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444555667788888888876655444 4444555677788888888888888877777777776653
No 16
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=69.75 E-value=18 Score=31.36 Aligned_cols=42 Identities=29% Similarity=0.502 Sum_probs=24.7
Q ss_pred HHhhHHHHHHH-HHHHHHhhhHHHhhhhhhHHHHHHHHHhhhh
Q 028954 126 KACQRRDKMEE-IEAKVKALGDEQRATLDRIEAEYREQIAGLR 167 (201)
Q Consensus 126 Ka~rRREKmEE-iEaKikaLreEq~a~l~riE~eYrEqla~Lr 167 (201)
+..||+++.++ -++-...|.++...+...+++||.+++.+|-
T Consensus 120 ~qekrqekL~~kh~e~lq~i~ee~~k~q~~l~~eye~k~~~L~ 162 (185)
T PF08703_consen 120 KQEKRQEKLEEKHEEVLQQIEEEEKKLQAELEQEYEEKMKRLP 162 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555533 3444455666666666677777777766664
No 17
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=67.97 E-value=14 Score=37.36 Aligned_cols=43 Identities=33% Similarity=0.421 Sum_probs=30.1
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHH
Q 028954 117 RVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYR 160 (201)
Q Consensus 117 RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYr 160 (201)
|-.||||.|+.-||-|.---.|.. |+=.|||++--+-|-+||-
T Consensus 409 ~rkqqleae~e~kreearrkaeee-r~~keee~arrefirqey~ 451 (708)
T KOG3654|consen 409 RRKQQLEAEKEQKREEARRKAEEE-RAPKEEEVARREFIRQEYE 451 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhh-hcchhhhhhHHHHHHHHHH
Confidence 346899999988774432222111 6778999999899999983
No 18
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=67.50 E-value=49 Score=26.39 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028954 153 DRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFL 192 (201)
Q Consensus 153 ~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfl 192 (201)
+.-..++.+.+..-|+|++..-++...+=...-..+..-|
T Consensus 84 ~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l 123 (141)
T PRK08476 84 AKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQL 123 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544444444444333
No 19
>PRK11637 AmiB activator; Provisional
Probab=67.47 E-value=1e+02 Score=28.39 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHHhhhhhh
Q 028954 151 TLDRIEAEYREQIAGLRKD 169 (201)
Q Consensus 151 ~l~riE~eYrEqla~LrRD 169 (201)
.|.+-+..+..+|..|.++
T Consensus 237 ~l~~~~~~L~~~I~~l~~~ 255 (428)
T PRK11637 237 ELRANESRLRDSIARAERE 255 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=64.86 E-value=1.8e+02 Score=31.64 Aligned_cols=44 Identities=41% Similarity=0.557 Sum_probs=34.9
Q ss_pred HHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhh
Q 028954 125 EKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKD 169 (201)
Q Consensus 125 EKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRD 169 (201)
.|...-|.|+-+|||+|.+++.|..+-=+.|+ +-|+-|.++||.
T Consensus 309 ~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~-~~r~~~~~~~re 352 (1074)
T KOG0250|consen 309 GKIEEARQKLTEIEAKIGELKDEVDAQDEEIE-EARKDLDDLRRE 352 (1074)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHH
Confidence 45566788889999999999999988777776 567777777773
No 21
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.13 E-value=1.4e+02 Score=30.54 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhh
Q 028954 87 VSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGL 166 (201)
Q Consensus 87 ~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~L 166 (201)
+..|-+--+++|+-.+.-..+++|+.=...++|.+++.=+. + -+..+..+++|-...+.....+-++.+..|
T Consensus 517 i~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~-~-------~~~~~~~a~~ea~~~~~~a~~~~~~~i~~l 588 (771)
T TIGR01069 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE-R-------ERNKKLELEKEAQEALKALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555544444444333221111 1 111222334444445555555555555555
Q ss_pred hh
Q 028954 167 RK 168 (201)
Q Consensus 167 rR 168 (201)
|.
T Consensus 589 k~ 590 (771)
T TIGR01069 589 KE 590 (771)
T ss_pred Hh
Confidence 54
No 22
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=61.89 E-value=63 Score=27.63 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=37.4
Q ss_pred hhhhhhHHHHHHHhHHHh--hHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 028954 111 AAWRLRRVELQLESEKAC--QRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKL 177 (201)
Q Consensus 111 AaWRL~RvElQLESEKa~--rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKl 177 (201)
..=..+++|.+++-+.+. +.-++|-++|.||..|+++....-..-|+.. ..++.|.-|+++=.+.+
T Consensus 108 ~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~-~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 108 LLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKD-KEISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 333445666666555332 3346677788888888776544444444333 44566666666555544
No 23
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=61.44 E-value=41 Score=33.95 Aligned_cols=22 Identities=45% Similarity=0.451 Sum_probs=11.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHH
Q 028954 159 YREQIAGLRKDAEAKEQKLAEQ 180 (201)
Q Consensus 159 YrEqla~LrRDAE~KEqKlaEq 180 (201)
-++|=+.-+-|-++-|+|+|+|
T Consensus 267 ~e~~~~k~~q~~~~~eek~a~q 288 (591)
T KOG2412|consen 267 AEEQAEKEVQDPKAHEEKLAEQ 288 (591)
T ss_pred HHHHHHHHhcCchhcccccccc
Confidence 3344444555555566666654
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=59.06 E-value=2e+02 Score=30.51 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 028954 153 DRIEAEYREQIAGLRKDAEAKEQKLAE 179 (201)
Q Consensus 153 ~riE~eYrEqla~LrRDAE~KEqKlaE 179 (201)
.-+++++.+++..+....+.+.+++.+
T Consensus 724 ~~~~~~~d~~i~~i~~~i~~~~~~~~~ 750 (1201)
T PF12128_consen 724 QELEAELDEQIEQIKQEIAAAKQEAKE 750 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 25
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=57.26 E-value=1.9e+02 Score=28.11 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHH--HHHHHHHHhhhHHHhhhhhhHHHHHHH-
Q 028954 85 LLVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKM--EEIEAKVKALGDEQRATLDRIEAEYRE- 161 (201)
Q Consensus 85 ~~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKm--EEiEaKikaLreEq~a~l~riE~eYrE- 161 (201)
.--..+.-|-+.|-.+++--+.|=+...=-|..|++.++.|++.-+.--- -+=..|+..+++|++..+..++++|..
T Consensus 143 ~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~ 222 (420)
T COG4942 143 QRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSAD 222 (420)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457788888898898888888888888999999999999887653222 234567888999999999999999975
Q ss_pred --HHhhhhhhHHHHHHHHHH
Q 028954 162 --QIAGLRKDAEAKEQKLAE 179 (201)
Q Consensus 162 --qla~LrRDAE~KEqKlaE 179 (201)
.+..|+.++..=.+.++.
T Consensus 223 q~~l~eL~~~~~~L~~~Ias 242 (420)
T COG4942 223 QKKLEELRANESRLKNEIAS 242 (420)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 366777666655555543
No 26
>PHA02675 ORF104 fusion protein; Provisional
Probab=56.95 E-value=14 Score=29.11 Aligned_cols=36 Identities=33% Similarity=0.703 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHH
Q 028954 87 VSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAKV 141 (201)
Q Consensus 87 ~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaKi 141 (201)
..++++||+++.+ +|+|||--+|+ -|+-|=-.-.||
T Consensus 46 ~~~i~~cC~~~~~--------------~L~RLE~H~ET-----LRk~Ml~L~KKI 81 (90)
T PHA02675 46 YKTITDCCRETGA--------------RLDRLERHLET-----LREALLKLNTKI 81 (90)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHH-----HHHHHHHHHhhc
Confidence 3567889988877 68999988876 455555444444
No 27
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.94 E-value=1.2e+02 Score=30.94 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=17.7
Q ss_pred HHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHH
Q 028954 137 IEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAE 171 (201)
Q Consensus 137 iEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE 171 (201)
+|.+.+.|.++....+.+.+.+|.+.|...|+.++
T Consensus 553 l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~ 587 (782)
T PRK00409 553 LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEAD 587 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555555433
No 28
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.67 E-value=1.5e+02 Score=30.29 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=17.9
Q ss_pred HHHHhhhHHHhhhhhhHHHHHHHHHhhhhh
Q 028954 139 AKVKALGDEQRATLDRIEAEYREQIAGLRK 168 (201)
Q Consensus 139 aKikaLreEq~a~l~riE~eYrEqla~LrR 168 (201)
..++.+++|-...+.....+-++-+..||.
T Consensus 566 ~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 566 KLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666666666653
No 29
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=55.52 E-value=52 Score=32.22 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHhhhh-hhHHHHHHHHHH
Q 028954 152 LDRIEAEYREQIAGLR-KDAEAKEQKLAE 179 (201)
Q Consensus 152 l~riE~eYrEqla~Lr-RDAE~KEqKlaE 179 (201)
-++||.||-++++.|| -+||++-+++-|
T Consensus 391 ~~k~EEEYas~~~kl~l~eaee~r~~~~e 419 (446)
T PF07227_consen 391 SEKIEEEYASRYLKLRLNEAEEERKKKFE 419 (446)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3445555555555555 344444444433
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.92 E-value=1.2e+02 Score=26.19 Aligned_cols=66 Identities=15% Similarity=0.321 Sum_probs=0.0
Q ss_pred hhhHHHHHHH-------------hHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028954 114 RLRRVELQLE-------------SEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQ 180 (201)
Q Consensus 114 RL~RvElQLE-------------SEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEq 180 (201)
||..+|+||+ .+......+|.++-+..|..|.+|-... ++||..++.+.+.-++++.++
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L--------~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL--------KNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 028954 181 WSAKHLR 187 (201)
Q Consensus 181 W~~Kh~r 187 (201)
......+
T Consensus 166 ~~~~~~~ 172 (206)
T PRK10884 166 QRTIIMQ 172 (206)
T ss_pred HHHHHHH
No 31
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=53.89 E-value=1.1e+02 Score=24.41 Aligned_cols=15 Identities=27% Similarity=0.045 Sum_probs=6.1
Q ss_pred hhhhhhhhhHHHHHH
Q 028954 108 KKEAAWRLRRVELQL 122 (201)
Q Consensus 108 KKEAaWRL~RvElQL 122 (201)
++||.=-+...|.+|
T Consensus 55 ~~ea~~~~~e~e~~l 69 (164)
T PRK14471 55 RKEMQNLQADNERLL 69 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444443344444433
No 32
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=53.64 E-value=18 Score=27.89 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=12.9
Q ss_pred HhhhhhhHHHHHHHHHhhhhh
Q 028954 148 QRATLDRIEAEYREQIAGLRK 168 (201)
Q Consensus 148 q~a~l~riE~eYrEqla~LrR 168 (201)
|+..+-..=..|.+||..||+
T Consensus 44 E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 44 ELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHhhccHHHHHHHHH
Confidence 333333333468888888887
No 33
>PRK11637 AmiB activator; Provisional
Probab=51.64 E-value=2e+02 Score=26.57 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=23.4
Q ss_pred HHHHHhhhHHHhhhhhhHHHHH---HHHHhhhhhhHHHHHHHHHH
Q 028954 138 EAKVKALGDEQRATLDRIEAEY---REQIAGLRKDAEAKEQKLAE 179 (201)
Q Consensus 138 EaKikaLreEq~a~l~riE~eY---rEqla~LrRDAE~KEqKlaE 179 (201)
-+++...+.+....+..++.++ ..+|+.|++|.+.-+..|++
T Consensus 207 k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 207 QQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444555555443 34677777766666665554
No 34
>PLN02372 violaxanthin de-epoxidase
Probab=50.82 E-value=2e+02 Score=28.48 Aligned_cols=72 Identities=21% Similarity=0.359 Sum_probs=40.2
Q ss_pred HHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHH-----HHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhh
Q 028954 94 CRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKM-----EEIEAKVKALGDEQRATLDRIEAEYREQIAGLRK 168 (201)
Q Consensus 94 CrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKm-----EEiEaKikaLreEq~a~l~riE~eYrEqla~LrR 168 (201)
-|.+|+|-+--+.. ...+|.|+|-|-..-+++.| +-++.+++.|...+..++..+-.|-.++|..|..
T Consensus 367 ~~~~e~~e~~i~~e-------~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~ 439 (455)
T PLN02372 367 EKDVEEGEKTIVKE-------ARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKM 439 (455)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46777777665543 45556555543333222222 1255566666666666666666666666666655
Q ss_pred hHHH
Q 028954 169 DAEA 172 (201)
Q Consensus 169 DAE~ 172 (201)
.|..
T Consensus 440 ~~~~ 443 (455)
T PLN02372 440 EASE 443 (455)
T ss_pred HHHH
Confidence 5543
No 35
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=50.60 E-value=95 Score=31.15 Aligned_cols=60 Identities=28% Similarity=0.428 Sum_probs=36.8
Q ss_pred hHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 028954 116 RRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKL 177 (201)
Q Consensus 116 ~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKl 177 (201)
+.+|+||..|-.. -|...|.+++++++.- +.+..|+++-.+..++|..|.+..+..+...
T Consensus 79 se~E~~Lq~E~~~-L~kElE~L~~qlqaqv-~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 79 SEVEQQLQAEAEH-LRKELESLEEQLQAQV-ENNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555443 3444677777777743 3555777777777778877776666554443
No 36
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=50.54 E-value=1.2e+02 Score=24.33 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=24.3
Q ss_pred hhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 028954 149 RATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKH 185 (201)
Q Consensus 149 ~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh 185 (201)
...+++|...|..+++.|+.+-+.-+..| .+||..|
T Consensus 27 ~~~I~~i~~~~~~~~~~l~~~i~~l~~~l-~~y~e~~ 62 (149)
T PF07352_consen 27 NDEIARIKEWYEAEIAPLQNRIEYLEGLL-QAYAEAN 62 (149)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHH-HHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC
Confidence 55667777788888887777777666544 4565544
No 37
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=50.23 E-value=16 Score=34.99 Aligned_cols=24 Identities=46% Similarity=0.769 Sum_probs=19.0
Q ss_pred HhHHHhhHHHHHHHHHHHHHhhhHH
Q 028954 123 ESEKACQRRDKMEEIEAKVKALGDE 147 (201)
Q Consensus 123 ESEKa~rRREKmEEiEaKikaLreE 147 (201)
++||+-|+| +.+|.||+.++||.|
T Consensus 394 ~~~~~AK~r-eL~eLeAq~~aL~AE 417 (419)
T PF12737_consen 394 EAEREAKRR-ELEELEAQARALRAE 417 (419)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 566766655 578899999999976
No 38
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=50.16 E-value=17 Score=28.12 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHhhH----HHHhhhhhhhhhh
Q 028954 84 NLLVSELMECCRELKEGHR----AWAAHKKEAAWRL 115 (201)
Q Consensus 84 ~~~~~eLvecCrELEEG~r----aw~aHKKEAaWRL 115 (201)
-.+++||||-++++.+... ---.|-+||..||
T Consensus 55 KvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rrL 90 (90)
T PF04719_consen 55 KVFVGEIVEEARDVQEEWGETGPLQPDHLREAYRRL 90 (90)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHhC
Confidence 4689999999999887321 2347889988876
No 39
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=49.84 E-value=2.5e+02 Score=27.07 Aligned_cols=103 Identities=31% Similarity=0.420 Sum_probs=57.1
Q ss_pred cchhhHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHH--HhhHHH-------HHHHHHHHHHhhhHHHhhhh
Q 028954 82 GENLLVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEK--ACQRRD-------KMEEIEAKVKALGDEQRATL 152 (201)
Q Consensus 82 ~~~~~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEK--a~rRRE-------KmEEiEaKikaLreEq~a~l 152 (201)
.-+-.+++ |+.+|-.||-++.-- =||+.-|-.|---| +|+... ..|..|.|-+.|--.++.-|
T Consensus 265 drsrhlse-vqiakraeerrqiet-------erlrqeeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqel 336 (445)
T KOG2891|consen 265 DRSRHLSE-VQIAKRAEERRQIET-------ERLRQEEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQEL 336 (445)
T ss_pred chhhhhhH-HHHHHHHHHHhhhhH-------HHHhhhHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHH
Confidence 33455677 888888888777532 24433332222111 222111 12344555555544455555
Q ss_pred hhH--HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-----HHHHHH
Q 028954 153 DRI--EAEYREQIAGLRKDAEAKEQKLAEQWSAKHL-----RLTKFL 192 (201)
Q Consensus 153 ~ri--E~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~-----rL~kfl 192 (201)
++. |.--|+.-+.-|.-||.||||=+|+-..-.. ||.||+
T Consensus 337 eqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~ 383 (445)
T KOG2891|consen 337 EQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFE 383 (445)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 543 3344666677788899999999998765433 455554
No 40
>PRK13824 replication initiation protein RepC; Provisional
Probab=48.37 E-value=1e+02 Score=29.29 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHhhhhhhH
Q 028954 152 LDRIEAEYREQIAGLRKDA 170 (201)
Q Consensus 152 l~riE~eYrEqla~LrRDA 170 (201)
.+.++..|.+-+..|+|.+
T Consensus 195 w~~~~~~~~~i~~~l~R~~ 213 (404)
T PRK13824 195 WEGVEQRFRAIVARLPRRA 213 (404)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 3444444444444444443
No 41
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=48.29 E-value=87 Score=25.11 Aligned_cols=55 Identities=22% Similarity=0.477 Sum_probs=34.9
Q ss_pred hhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHH
Q 028954 108 KKEAAWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQ 175 (201)
Q Consensus 108 KKEAaWRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEq 175 (201)
|.|--||+.||| |-...--.+..+|+-+++.. ..-..++. -+|..++||-|.-|+
T Consensus 6 r~e~e~Ri~rLE-----endk~i~~~L~~Ik~gq~~q----e~v~~kld----~tlD~i~reRe~dee 60 (98)
T PF11166_consen 6 RHEHEWRIRRLE-----ENDKTIFNKLDEIKDGQHDQ----ELVNQKLD----RTLDEINREREEDEE 60 (98)
T ss_pred hhhHHHHHHHHH-----HhhHHHHHHHHHHHHhHhhH----HHHHHHHH----hhHHHHHHHHHHHHH
Confidence 458899999999 34445567888888887753 22233333 245567776555443
No 42
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=48.12 E-value=1.3e+02 Score=23.39 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=24.9
Q ss_pred hhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028954 150 ATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 150 a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g 196 (201)
..+.+.+.+|+.....++++.+.+++++...=..+ +-++++.++
T Consensus 83 ~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~---i~~~v~~~a 126 (158)
T PF03938_consen 83 QELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKK---INKAVEEYA 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34455666666666666666666666655544433 444444443
No 43
>PRK11098 microcin B17 transporter; Reviewed
Probab=47.91 E-value=25 Score=33.43 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHH
Q 028954 153 DRIEAEYREQIAGLRKDAEAKEQK 176 (201)
Q Consensus 153 ~riE~eYrEqla~LrRDAE~KEqK 176 (201)
.|.||+||-.|.-+|.+||..|.+
T Consensus 276 qr~EAdFR~~LVrvrenaE~~E~~ 299 (409)
T PRK11098 276 QRVEAAYRKELVYGEDDADRATPP 299 (409)
T ss_pred HHHHHHHHHHHhHhhhhhhHHHHH
Confidence 468999999999999999955543
No 44
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=47.91 E-value=1e+02 Score=22.15 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=6.7
Q ss_pred HhhhhhhHHHHHHHHHH
Q 028954 163 IAGLRKDAEAKEQKLAE 179 (201)
Q Consensus 163 la~LrRDAE~KEqKlaE 179 (201)
|..|.+..+.|...|-+
T Consensus 63 l~~l~~~~~~~~~~l~~ 79 (127)
T smart00502 63 LEDLEEQKENKLKVLEQ 79 (127)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444433
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.84 E-value=65 Score=32.72 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=10.4
Q ss_pred HHHHHHhhhhhhHHHHHHHH
Q 028954 158 EYREQIAGLRKDAEAKEQKL 177 (201)
Q Consensus 158 eYrEqla~LrRDAE~KEqKl 177 (201)
+-...+..||||--.||.-+
T Consensus 549 ~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666665433
No 46
>PRK11519 tyrosine kinase; Provisional
Probab=47.54 E-value=85 Score=31.18 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHh---------hhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 028954 113 WRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQR---------ATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSA 183 (201)
Q Consensus 113 WRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~---------a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~ 183 (201)
=-+.=++.||+ +-|.++++.|.++.+.|.+.+ +.++.+ ++|+.|+..| +.+++.|......
T Consensus 267 ~a~~fL~~ql~-----~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~-~~l~~ql~~l----~~~~~~l~~~y~~ 336 (719)
T PRK11519 267 KSLAFLAQQLP-----EVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSM-VNIDAQLNEL----TFKEAEISKLYTK 336 (719)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHhcc
Confidence 34455666664 456678888888888776543 334444 4666776655 5567777778888
Q ss_pred HHHHHHHHHHHh
Q 028954 184 KHLRLTKFLEQM 195 (201)
Q Consensus 184 Kh~rL~kfleq~ 195 (201)
+|-.+.....|.
T Consensus 337 ~hP~v~~l~~~~ 348 (719)
T PRK11519 337 EHPAYRTLLEKR 348 (719)
T ss_pred cCcHHHHHHHHH
Confidence 887776655543
No 47
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=46.63 E-value=2.3e+02 Score=25.82 Aligned_cols=92 Identities=16% Similarity=0.292 Sum_probs=73.3
Q ss_pred HHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhh--------------------HHHHHHHHHHHHHhhhHHHhhhhhh
Q 028954 95 RELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQ--------------------RRDKMEEIEAKVKALGDEQRATLDR 154 (201)
Q Consensus 95 rELEEG~raw~aHKKEAaWRL~RvElQLESEKa~r--------------------RREKmEEiEaKikaLreEq~a~l~r 154 (201)
+.|+....-.-.-++...+.+..|++||+--++.= |.=++.++.-.|..|+++|..-++-
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdElde 142 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDE 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666667888999999999998766542 1226788889999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 028954 155 IEAEYREQIAGLRKDAEAKEQKLAEQWSAKHL 186 (201)
Q Consensus 155 iE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~ 186 (201)
++.-|+.-++.|-+.-..|.+++--.=+.|..
T Consensus 143 l~e~~~~el~~l~~~~q~k~~~il~~~~~k~~ 174 (258)
T PF15397_consen 143 LNEMRQMELASLSRKIQEKKEEILSSAAEKTQ 174 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887665555543
No 48
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=46.57 E-value=72 Score=34.08 Aligned_cols=19 Identities=42% Similarity=0.700 Sum_probs=9.6
Q ss_pred CCCcccccCCC-CCCCCCCC
Q 028954 4 SNGGFLHTDPA-TPPNLLPP 22 (201)
Q Consensus 4 s~~~fl~~~~~-~~~~~LPP 22 (201)
|+...+..+.. |++|-+||
T Consensus 516 s~~~~~~~~~~iP~PP~~pp 535 (1102)
T KOG1924|consen 516 SPSQLLPIDGGIPPPPPLPP 535 (1102)
T ss_pred CcccCCCCCCCCCCCCCCCC
Confidence 34444444332 55566776
No 49
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=46.55 E-value=1.5e+02 Score=23.74 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHH----HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028954 131 RDKMEEIEAKVKALGDEQRATLDRIEAE----YREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFL 192 (201)
Q Consensus 131 REKmEEiEaKikaLreEq~a~l~riE~e----YrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfl 192 (201)
|+.-+|.+..|...|.+.-+-+.+.|++ +......|.++.+.|=+.|-..-..+...++++|
T Consensus 34 KqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~~ki~~ik~~~~~~~~~Vv~~L 99 (113)
T TIGR01147 34 KQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQAKIREIKKAVQKNKDAVIKDL 99 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444444444444433333333322 1222333444444444444444444444454444
No 50
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=45.73 E-value=64 Score=24.24 Aligned_cols=52 Identities=29% Similarity=0.534 Sum_probs=33.0
Q ss_pred hhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 028954 143 ALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQK-------LAEQWSAKHLRLTKFLEQM 195 (201)
Q Consensus 143 aLreEq~a~l~riE~eYrEqla~LrRDAE~KEqK-------laEqW~~Kh~rL~kfleq~ 195 (201)
.+-+++++.|.-+..+-+.+|.. -...+..... +++.....|-+|+..+.+|
T Consensus 18 ~ld~~~~~~L~~l~~dIe~~L~~-~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~lr~i 76 (85)
T PF14357_consen 18 PLDEETRAELSSLDDDIEAQLAE-EDEAEAEDESLVDRLNEAVERFEASHPKLAGILRNI 76 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc-CCcccccchhHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 46667777777777777776666 2122233334 4555667999998888765
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=45.55 E-value=3.5e+02 Score=27.65 Aligned_cols=8 Identities=50% Similarity=0.684 Sum_probs=3.0
Q ss_pred HHHHHhHH
Q 028954 119 ELQLESEK 126 (201)
Q Consensus 119 ElQLESEK 126 (201)
|.||-.||
T Consensus 508 EkQL~eEr 515 (697)
T PF09726_consen 508 EKQLQEER 515 (697)
T ss_pred HHHHHHHH
Confidence 33333333
No 52
>PF04795 PAPA-1: PAPA-1-like conserved region; InterPro: IPR006880 This is a group of proteins with a conserved C-terminal region which is found in PAPA-1, a PAP-1 binding protein, Q9C086 from SWISSPROT.
Probab=45.17 E-value=28 Score=26.35 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=22.3
Q ss_pred HhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhH
Q 028954 123 ESEKACQRRDKMEEIEAKVKALGDEQRATLDRI 155 (201)
Q Consensus 123 ESEKa~rRREKmEEiEaKikaLreEq~a~l~ri 155 (201)
=+|+|+|||.-.| |.+.||.+.+++||
T Consensus 6 raE~ArkRk~~~e------Kk~EEeK~eTInKL 32 (89)
T PF04795_consen 6 RAENARKRKNQSE------KKLEEEKMETINKL 32 (89)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 3689999998776 67888888888888
No 53
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=44.66 E-value=51 Score=25.74 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=26.1
Q ss_pred HHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHh
Q 028954 118 VELQLESEKACQRRDKMEEIEAKVKALGDEQR 149 (201)
Q Consensus 118 vElQLESEKa~rRREKmEEiEaKikaLreEq~ 149 (201)
-.+|-+.|..+.+--|++||+.||+-|++.-.
T Consensus 7 Ek~~k~eElkrlK~lK~~Ei~~kl~kik~~~G 38 (101)
T PF05178_consen 7 EKQEKEEELKRLKNLKRKEIEEKLEKIKEVAG 38 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35667778888888999999999999987654
No 54
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=44.11 E-value=2.1e+02 Score=24.57 Aligned_cols=59 Identities=25% Similarity=0.368 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028954 135 EEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQM 195 (201)
Q Consensus 135 EEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~ 195 (201)
+.+|.+|+.|.+-=+.+-.|.|...|. +..|.+.-..=|..| +.|..||..+.+=|+++
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~-v~~Le~~id~le~eL-~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERR-VKKLEKEIDRLEDEL-EKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 556666666666666666666655543 555555555555554 46888898888888764
No 55
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=44.09 E-value=88 Score=22.17 Aligned_cols=36 Identities=31% Similarity=0.305 Sum_probs=24.9
Q ss_pred hhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHH
Q 028954 113 WRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQ 148 (201)
Q Consensus 113 WRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq 148 (201)
=.|..=+.+.|.++...++...++-|.-|+.||.+.
T Consensus 15 ~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~l 50 (57)
T PF06886_consen 15 KKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKEL 50 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555666677777777777777777788887653
No 56
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.61 E-value=50 Score=24.68 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=26.8
Q ss_pred hhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHH
Q 028954 114 RLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQ 148 (201)
Q Consensus 114 RL~RvElQLESEKa~rRREKmEEiEaKikaLreEq 148 (201)
.|..||.|||.--.+=|-.|++-+-..|..|+..+
T Consensus 50 eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke 84 (100)
T PF01486_consen 50 ELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKE 84 (100)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999998877777777777777777776543
No 57
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=43.54 E-value=1.7e+02 Score=23.46 Aligned_cols=14 Identities=21% Similarity=0.143 Sum_probs=5.5
Q ss_pred hhhhhhhhHHHHHH
Q 028954 109 KEAAWRLRRVELQL 122 (201)
Q Consensus 109 KEAaWRL~RvElQL 122 (201)
+||.=.+...|.+|
T Consensus 70 ~ea~~~~~e~e~~L 83 (156)
T CHL00118 70 AKANELTKQYEQEL 83 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 33433333344333
No 58
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=43.47 E-value=2e+02 Score=24.21 Aligned_cols=52 Identities=27% Similarity=0.428 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhhHHHhhh----------------hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 028954 132 DKMEEIEAKVKALGDEQRAT----------------LDRIEAEYREQIAGLRKDAEAKEQKLAEQWSA 183 (201)
Q Consensus 132 EKmEEiEaKikaLreEq~a~----------------l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~ 183 (201)
+.+++.+..+..+.+++... |+.+|.+++...+.+-|+.|..-..=|++.+.
T Consensus 120 ~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk~~Ll~~le~e~~~e~a~~ir~~eeeak~~A~~~Ar 187 (201)
T PF12072_consen 120 EELEEREEELEELIEEQQQELEEIAGLTAEEAKEILLEKLEEEARREAAALIRRIEEEAKEEADKKAR 187 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666655554 34567777777777777776665555555543
No 59
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=43.23 E-value=1.3e+02 Score=31.48 Aligned_cols=76 Identities=26% Similarity=0.335 Sum_probs=52.0
Q ss_pred HHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 028954 118 VELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHL-RLTKFLEQM 195 (201)
Q Consensus 118 vElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~-rL~kfleq~ 195 (201)
=++|-|+||..+||.+ |+-++|-.-++++.+.-++|-|.--| .+..=|+-+|.||.--+|+=+.+|. -++||+.-+
T Consensus 306 KKqqkekEkeEKrrKd-E~Ek~kKqeek~KR~k~~Erkee~~r-k~deerkK~e~ke~ea~E~rkkr~~aei~Kffqk~ 382 (811)
T KOG4364|consen 306 KKQQKEKEKEEKRRKD-EQEKLKKQEEKQKRAKIMERKEEKSR-KSDEERKKLESKEVEAQELRKKRHEAEIGKFFQKI 382 (811)
T ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhccc
Confidence 3567788887776644 44455556666666666676664333 3456688888888888888888885 468888754
No 60
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=42.30 E-value=92 Score=24.95 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 028954 151 TLDRIEAEYREQIAGLRKDAEAKEQKLAEQWS 182 (201)
Q Consensus 151 ~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~ 182 (201)
.+++||++|.++++.++-.++..-..|..+=.
T Consensus 18 ~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~ 49 (149)
T PF07352_consen 18 EIARIEAEANDEIARIKEWYEAEIAPLQNRIE 49 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666555555544444433
No 61
>smart00830 CM_2 Chorismate mutase type II. Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine PUBMED:9642265, PUBMED:9497350.
Probab=42.08 E-value=90 Score=21.65 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 028954 131 RDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHL 186 (201)
Q Consensus 131 REKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~ 186 (201)
|.++.+|..+|-.|=.+=...+..| ++|+.. .|+--+....|+++.+.|...-.
T Consensus 1 R~~Id~iD~~ii~Ll~~R~~l~~~i-~~~K~~-~~~~i~d~~Re~~vl~~~~~~a~ 54 (79)
T smart00830 1 RAEIDAIDDQILALLAERAALAREV-ARLKAK-NGLPIYDPEREAEVLERLRALAE 54 (79)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-CCCCCCChHHHHHHHHHHHHHcc
Confidence 5678889998888877777777777 788877 56666777788888888665543
No 62
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.07 E-value=3.2e+02 Score=28.51 Aligned_cols=61 Identities=26% Similarity=0.359 Sum_probs=41.6
Q ss_pred hhHHHHHHHhHHHhhHHHHHHHHHHH---HHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHH
Q 028954 115 LRRVELQLESEKACQRRDKMEEIEAK---VKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQK 176 (201)
Q Consensus 115 L~RvElQLESEKa~rRREKmEEiEaK---ikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqK 176 (201)
.+|+|++++-.-.---|--.++++-| ..-|+..| ++++.-|..|.+|+-..|.|-+++-.|
T Consensus 78 ~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q-~a~~~~e~~lq~q~e~~~n~~q~~~~k 141 (716)
T KOG4593|consen 78 HKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQ-EALKGQEEKLQEQLERNRNQCQANLKK 141 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788887766555555444555444 44578888 888899999999998888665554433
No 63
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.74 E-value=2.6e+02 Score=25.07 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 028954 128 CQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSA 183 (201)
Q Consensus 128 ~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~ 183 (201)
..||++|+.+|++|..|..+= +.++.+-+ +.+.|=-+.|.+-|-++-..
T Consensus 170 ~~rre~~~kLe~~ie~~~~~v----e~f~~~~~---~E~~~Fe~~K~~e~k~~l~~ 218 (240)
T cd07667 170 ALRKEERPKVPTDVEKCQDRV----ECFNADLK---ADMERWQNNKRQDFRQLLMG 218 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999887654 44443333 33333344555555554433
No 64
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=41.39 E-value=3.3e+02 Score=27.17 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 028954 151 TLDRIEAEYREQIAGLRKDAEAKEQKL 177 (201)
Q Consensus 151 ~l~riE~eYrEqla~LrRDAE~KEqKl 177 (201)
.+...|.+|+ .|.||++.++.-.
T Consensus 364 ~~p~~e~~~~----~L~R~~~~~~~lY 386 (726)
T PRK09841 364 AMPSTQQEVL----RLSRDVEAGRAVY 386 (726)
T ss_pred hccHHHHHHH----HHHHHHHHHHHHH
Confidence 4444454444 4788888887543
No 65
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=41.26 E-value=2.6e+02 Score=30.28 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=5.4
Q ss_pred hHHHHHHHHHh
Q 028954 154 RIEAEYREQIA 164 (201)
Q Consensus 154 riE~eYrEqla 164 (201)
||+.+-.|||+
T Consensus 980 ~l~~e~q~qla 990 (1259)
T KOG0163|consen 980 RLALELQEQLA 990 (1259)
T ss_pred HHHHHHHHHHH
Confidence 44444455544
No 66
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=41.23 E-value=2.2e+02 Score=25.84 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=9.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHH
Q 028954 160 REQIAGLRKDAEAKEQKLAEQWS 182 (201)
Q Consensus 160 rEqla~LrRDAE~KEqKlaEqW~ 182 (201)
..++..|....+..++.-.+-|.
T Consensus 77 ~~el~~le~e~~~l~~eE~~~~~ 99 (314)
T PF04111_consen 77 DQELEELEEELEELDEEEEEYWR 99 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333334444
No 67
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.06 E-value=3.2e+02 Score=26.77 Aligned_cols=60 Identities=25% Similarity=0.311 Sum_probs=36.2
Q ss_pred hhhhhhhHHHHHHH---h-HHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhH
Q 028954 110 EAAWRLRRVELQLE---S-EKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDA 170 (201)
Q Consensus 110 EAaWRL~RvElQLE---S-EKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDA 170 (201)
+..=.|..++.||. + |....-.++.++++.+|..+..+-......|+ ...+++..++++-
T Consensus 402 ~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 465 (650)
T TIGR03185 402 ELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLE-TLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34445566666663 2 66677777777777777777766666555555 3444444454433
No 68
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=40.95 E-value=72 Score=22.64 Aligned_cols=34 Identities=26% Similarity=0.182 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHh
Q 028954 91 MECCRELKEGHRAWAAHKKEAAWRLRRVELQLES 124 (201)
Q Consensus 91 vecCrELEEG~raw~aHKKEAaWRL~RvElQLES 124 (201)
..||.=|-.=+.....|=+||.==++++|+||.+
T Consensus 16 eaYc~~L~kykeeL~~p~~EA~~f~~~ie~qL~~ 49 (52)
T PF03791_consen 16 EAYCDMLVKYKEELQRPFQEAMEFCREIEQQLSS 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888888888999999999999999975
No 69
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.84 E-value=3.4e+02 Score=26.18 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=6.7
Q ss_pred HHhhhhhhHHHHHHHH
Q 028954 162 QIAGLRKDAEAKEQKL 177 (201)
Q Consensus 162 qla~LrRDAE~KEqKl 177 (201)
|+..|..+-+.=-.|-
T Consensus 261 q~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 261 QLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHHhhhHHHHHHH
Confidence 4444444444333333
No 70
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=40.21 E-value=80 Score=30.96 Aligned_cols=57 Identities=26% Similarity=0.469 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 028954 131 RDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRL 188 (201)
Q Consensus 131 REKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL 188 (201)
+.-.||+|.-|| |.+.|..-...-=.|=|-...+|||=+.+|-.|+-|-.++++++|
T Consensus 349 k~~~eeLESIVR-iKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl 405 (446)
T PF07227_consen 349 KPQIEELESIVR-IKQAEAKMFQLKADEARREAEGLQRIALAKSEKIEEEYASRYLKL 405 (446)
T ss_pred ccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 344566665554 233333222222235566668999999999999999999999987
No 71
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=39.82 E-value=2.3e+02 Score=23.80 Aligned_cols=63 Identities=24% Similarity=0.387 Sum_probs=36.8
Q ss_pred hHHHHHHHhHHHhhHHH--HH-HHHHHHHHhhhHH------------Hhhhhh-hHHHHHHHHHhhhhhhHHHHHHHHH
Q 028954 116 RRVELQLESEKACQRRD--KM-EEIEAKVKALGDE------------QRATLD-RIEAEYREQIAGLRKDAEAKEQKLA 178 (201)
Q Consensus 116 ~RvElQLESEKa~rRRE--Km-EEiEaKikaLreE------------q~a~l~-riE~eYrEqla~LrRDAE~KEqKla 178 (201)
+.|=..||+|+..+..+ || ++++++.+.|-.. |..... +...+|+.+-...+.|...++++.-
T Consensus 43 k~~~~~le~~f~~~~~~lq~~~~el~~~~~kL~~~~~~~~~~d~~k~e~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~ 121 (170)
T COG2825 43 KKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAFNKKQQEYEKDLNRREAEEE 121 (170)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788887766554 22 4556666555542 222222 4566676666777777766665543
No 72
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=39.76 E-value=39 Score=29.42 Aligned_cols=38 Identities=39% Similarity=0.479 Sum_probs=23.8
Q ss_pred hhhhHHHHHHHhHHHhhHHHH-HHHHHHHHHhhhHHHhh
Q 028954 113 WRLRRVELQLESEKACQRRDK-MEEIEAKVKALGDEQRA 150 (201)
Q Consensus 113 WRL~RvElQLESEKa~rRREK-mEEiEaKikaLreEq~a 150 (201)
|=-.|-|--=+|-++.=-||. +||||.|+.-|||=|-|
T Consensus 139 W~Yd~QEd~E~sAReeL~REELiEEIEQkVGGLRELEEa 177 (180)
T PLN00180 139 WVYERQEDIEESARAELWREELIEEIEQKVGGLRELEEA 177 (180)
T ss_pred eEeehHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 333343322245455555655 59999999999986654
No 73
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=39.65 E-value=65 Score=27.87 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=16.0
Q ss_pred hhhhhHHHHHHHHHhhhh
Q 028954 150 ATLDRIEAEYREQIAGLR 167 (201)
Q Consensus 150 a~l~riE~eYrEqla~Lr 167 (201)
+-|.++++=|+|||+.|.
T Consensus 144 ~el~~~d~fykeql~~le 161 (187)
T PF05300_consen 144 AELKKQDAFYKEQLARLE 161 (187)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999999999999984
No 74
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=39.59 E-value=80 Score=34.30 Aligned_cols=56 Identities=29% Similarity=0.535 Sum_probs=30.3
Q ss_pred hhHHHHHHH--hHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhH--HHHHHHHHhhhhhhH
Q 028954 115 LRRVELQLE--SEKACQRRDKMEEIEAKVKALGDEQRATLDRI--EAEYREQIAGLRKDA 170 (201)
Q Consensus 115 L~RvElQLE--SEKa~rRREKmEEiEaKikaLreEq~a~l~ri--E~eYrEqla~LrRDA 170 (201)
+++|++||| +|--.+-|+.++..|+.|..||.|+..+++-- =.-||..|+.||--|
T Consensus 186 ir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~a 245 (1195)
T KOG4643|consen 186 IRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQA 245 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Confidence 455666665 23334556666667777777777776665421 113444444444433
No 75
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=38.28 E-value=2.4e+02 Score=23.68 Aligned_cols=83 Identities=22% Similarity=0.279 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHH-----h----hHHHHHHHHHH----------HHHhhh
Q 028954 85 LLVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKA-----C----QRRDKMEEIEA----------KVKALG 145 (201)
Q Consensus 85 ~~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa-----~----rRREKmEEiEa----------KikaLr 145 (201)
.++..|-.++++++..+..+..+-+-+.-.+.....+|+--|. | +-+.|++.+++ |+++--
T Consensus 91 ~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~ 170 (251)
T cd07653 91 NVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANA 170 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 4557788889999999999999988888888887777764332 2 12333333221 233333
Q ss_pred HHHhhhhhhHHHHHHHHHhhhh
Q 028954 146 DEQRATLDRIEAEYREQIAGLR 167 (201)
Q Consensus 146 eEq~a~l~riE~eYrEqla~Lr 167 (201)
..-...++.-+.+|..+|..+-
T Consensus 171 ~k~~~~~~~a~~~Y~~~l~~~N 192 (251)
T cd07653 171 NLKTQAAEEAKNEYAAQLQKFN 192 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556778889999988873
No 76
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=38.23 E-value=59 Score=33.47 Aligned_cols=106 Identities=28% Similarity=0.306 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHH---------------Hhh--------H-------HHHH
Q 028954 85 LLVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEK---------------ACQ--------R-------RDKM 134 (201)
Q Consensus 85 ~~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEK---------------a~r--------R-------REKm 134 (201)
+.-+.|-.+-+||=+|--|=+----.|.-. |..||--+- |+| + -.-|
T Consensus 562 Ldt~~LN~hL~~lM~GLTAKVFRTYNASiT---lqeqL~~lt~p~~~v~~KIl~YnrANr~VAIlCNHQR~v~K~h~~sm 638 (759)
T KOG0981|consen 562 LDTSSLNKHLQELMDGLTAKVFRTYNASIT---LQEQLDKLTNPDGNVAAKILSYNRANRTVAILCNHQRAVSKTHEKSM 638 (759)
T ss_pred hchHHHHHHHHHHhccchhhhhhhcchhhH---HHHHHHhccCCCccHHHHHHHHhhccceeeeeecccccCCccHHHHH
Confidence 334567778888888866544333333332 344554332 222 1 2468
Q ss_pred HHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028954 135 EEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQMGC 197 (201)
Q Consensus 135 EEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g~ 197 (201)
|-+..||++|++. |...+++|+-.-++--.-+-.|+.|-.|+|-.+..||-.-|++|-.
T Consensus 639 ekl~~kI~~~keq----l~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~ 697 (759)
T KOG0981|consen 639 EKLAEKIKAKKEQ----LKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEI 697 (759)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999886 5555555544333322223456677888998888888777776543
No 77
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=38.17 E-value=2.4e+02 Score=23.64 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=12.5
Q ss_pred hHHHHHHHhHHHhhHHHH
Q 028954 116 RRVELQLESEKACQRRDK 133 (201)
Q Consensus 116 ~RvElQLESEKa~rRREK 133 (201)
.+|+.|.+.||..|++-.
T Consensus 60 e~L~~q~~~ek~~r~~~e 77 (158)
T PF09744_consen 60 EQLETQYEREKELRKQAE 77 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367777788887766544
No 78
>PRK02224 chromosome segregation protein; Provisional
Probab=38.07 E-value=4.2e+02 Score=26.41 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhHHHHh-------hhhhhhhhhhHHHHHHHh
Q 028954 87 VSELMECCRELKEGHRAWAA-------HKKEAAWRLRRVELQLES 124 (201)
Q Consensus 87 ~~eLvecCrELEEG~raw~a-------HKKEAaWRL~RvElQLES 124 (201)
+.+|+.. ..||+-...-.. -++...=.+..++.+|+.
T Consensus 155 i~~l~~l-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 155 IDDLLQL-GKLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 445554444333 444445556666666655
No 79
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=37.87 E-value=2e+02 Score=22.61 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhhhhHHH
Q 028954 156 EAEYREQIAGLRKDAEA 172 (201)
Q Consensus 156 E~eYrEqla~LrRDAE~ 172 (201)
..+|.+++..+|.|-+.
T Consensus 19 ~~~~~~~~~~~~~dl~~ 35 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLES 35 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666666543
No 80
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.35 E-value=1.4e+02 Score=20.58 Aligned_cols=55 Identities=31% Similarity=0.474 Sum_probs=33.5
Q ss_pred hhhhhHHHHHHHhHHHhhHHHH--HHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhh
Q 028954 112 AWRLRRVELQLESEKACQRRDK--MEEIEAKVKALGDEQRATLDRIEAEYREQIAGLR 167 (201)
Q Consensus 112 aWRL~RvElQLESEKa~rRREK--mEEiEaKikaLreEq~a~l~riE~eYrEqla~Lr 167 (201)
..+.+|.+..-+|=+.||.|-| |++.|.++..|-.+-......++ .+..++..|+
T Consensus 4 ~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~-~L~~~~~~L~ 60 (64)
T PF00170_consen 4 DKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELE-QLKKEIQSLK 60 (64)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4566777777788788776654 68888888887655444333332 3444444443
No 81
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=37.15 E-value=3.7e+02 Score=25.68 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=5.3
Q ss_pred hhhhhhHHHHHH
Q 028954 111 AAWRLRRVELQL 122 (201)
Q Consensus 111 AaWRL~RvElQL 122 (201)
|-.++..|..+|
T Consensus 256 a~~~i~~L~~~l 267 (582)
T PF09731_consen 256 AKERIDALQKEL 267 (582)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 82
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.11 E-value=74 Score=31.37 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=9.0
Q ss_pred hhhHHHHHHHhHHH
Q 028954 114 RLRRVELQLESEKA 127 (201)
Q Consensus 114 RL~RvElQLESEKa 127 (201)
+++.+|.||+.+|.
T Consensus 77 kasELEKqLaaLrq 90 (475)
T PRK13729 77 TAAQMQKQYEEIRR 90 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666777777753
No 83
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=36.74 E-value=83 Score=22.35 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=11.1
Q ss_pred hhhHHHHHHHhHHHhhH
Q 028954 114 RLRRVELQLESEKACQR 130 (201)
Q Consensus 114 RL~RvElQLESEKa~rR 130 (201)
||..+|.+|=+|...|.
T Consensus 5 Rl~ELe~klkaerE~R~ 21 (52)
T PF12808_consen 5 RLEELERKLKAEREARS 21 (52)
T ss_pred HHHHHHHHHHHhHHhcc
Confidence 66777777777764443
No 84
>PRK00106 hypothetical protein; Provisional
Probab=36.73 E-value=3.2e+02 Score=27.14 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 028954 154 RIEAEYREQIAGLRKDAEAKEQKLAEQWS 182 (201)
Q Consensus 154 riE~eYrEqla~LrRDAE~KEqKlaEqW~ 182 (201)
.+|.+++.+.+.+-|+.|..-..=|++.+
T Consensus 177 ~~~~~~~~~~~~~i~~~e~~a~~~a~~~a 205 (535)
T PRK00106 177 ETENKLTHEIATRIREAEREVKDRSDKMA 205 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444444443
No 85
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=35.72 E-value=88 Score=28.22 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=10.8
Q ss_pred cccc-CCCCCCCCCCCCcC
Q 028954 8 FLHT-DPATPPNLLPPWLS 25 (201)
Q Consensus 8 fl~~-~~~~~~~~LPPWls 25 (201)
+|+. ......+-||.|+.
T Consensus 146 dLs~~t~~~~~~~Lp~~~~ 164 (321)
T PF07946_consen 146 DLSLFTKTSESPKLPESLV 164 (321)
T ss_pred chhhccccccccCCCcceE
Confidence 4444 33345568888876
No 86
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.65 E-value=2.8e+02 Score=23.72 Aligned_cols=15 Identities=13% Similarity=0.415 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHhhhh
Q 028954 153 DRIEAEYREQIAGLR 167 (201)
Q Consensus 153 ~riE~eYrEqla~Lr 167 (201)
++-+.+|+.+|..+.
T Consensus 160 ~ka~~~Y~~~v~~~~ 174 (261)
T cd07648 160 KKAQDEYKALVEKYN 174 (261)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445678999988874
No 87
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=35.61 E-value=2.4e+02 Score=22.85 Aligned_cols=68 Identities=28% Similarity=0.399 Sum_probs=38.8
Q ss_pred HHHhhhhhhhhhhhHHHHHHHhHHHhhHH---HHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHH
Q 028954 103 AWAAHKKEAAWRLRRVELQLESEKACQRR---DKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEA 172 (201)
Q Consensus 103 aw~aHKKEAaWRL~RvElQLESEKa~rRR---EKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~ 172 (201)
+..+-+-|-.=+|.-++.-||.+|..+-. +| ++.++-...|+.+......||. |-.-+|+.++++-|.
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqk-d~L~~~l~~L~~q~~s~~qr~~-eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQK-DQLRNALQSLQAQNASRNQRIA-ELQAKIDEARRNLED 76 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44455556666788888888888877532 22 3366777777777666666653 455555556655544
No 88
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.34 E-value=2.8e+02 Score=23.48 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHH
Q 028954 134 MEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEA 172 (201)
Q Consensus 134 mEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~ 172 (201)
+.+++.+|..|.. +...|..--++.+.++..+.+..+.
T Consensus 122 ~~~l~~~i~~L~~-e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 122 KQELEEEIEELEE-EKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777744 5555555556666666665554443
No 89
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=35.06 E-value=24 Score=27.32 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=12.9
Q ss_pred HHHHHHHhhhhhhHH
Q 028954 157 AEYREQIAGLRKDAE 171 (201)
Q Consensus 157 ~eYrEqla~LrRDAE 171 (201)
+=||+||+.|.||.+
T Consensus 39 ~iyr~qL~ELe~d~~ 53 (117)
T TIGR03142 39 AVYRDRLAELERDLA 53 (117)
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999999955
No 90
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=34.96 E-value=61 Score=23.84 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=14.8
Q ss_pred hHHHHHHHhHHHhhHHHHHHHHHHHHHh
Q 028954 116 RRVELQLESEKACQRRDKMEEIEAKVKA 143 (201)
Q Consensus 116 ~RvElQLESEKa~rRREKmEEiEaKika 143 (201)
..|+.+++..+...+.+++.+|...|..
T Consensus 8 ~~l~~~~~~~~~~e~~~~~~~i~~~~~~ 35 (93)
T PF00816_consen 8 KELEKEIEERRKQEREEAIAEIRELMAE 35 (93)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 91
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=34.88 E-value=40 Score=32.09 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.9
Q ss_pred HHHhHHHhhHHHHHHHHHHHHHh
Q 028954 121 QLESEKACQRRDKMEEIEAKVKA 143 (201)
Q Consensus 121 QLESEKa~rRREKmEEiEaKika 143 (201)
-||||+..++|+++|.++++++.
T Consensus 29 aLEse~E~~~r~~l~~~~~~~~~ 51 (350)
T KOG4404|consen 29 ALESENEARERERLERRLANLKR 51 (350)
T ss_pred HhcCcchHHHHHHHHHHHHHHHH
Confidence 58999999999999999998875
No 92
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=34.46 E-value=1.8e+02 Score=21.05 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhh
Q 028954 133 KMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRK 168 (201)
Q Consensus 133 KmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrR 168 (201)
.++.++++++.|+..|..-+..|+.+..+ |..+..
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~-L~~~~~ 49 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEK-LKELNE 49 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 35667777777777777777777766533 444443
No 93
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=34.33 E-value=1.9e+02 Score=24.01 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=32.0
Q ss_pred hhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028954 149 RATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLE 193 (201)
Q Consensus 149 ~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfle 193 (201)
.+.++.--++|+.+....++|++.=|+| ++.|..++.++.+.-.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~-A~~~e~~~d~~~~~~~ 111 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAK-AKEAEAESDHALHHHH 111 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHhcccc
Confidence 5555555668888888888888777666 8888887777655433
No 94
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=33.89 E-value=2.6e+02 Score=22.82 Aligned_cols=18 Identities=17% Similarity=0.339 Sum_probs=7.3
Q ss_pred hHHHHHHHHHhhhhhhHH
Q 028954 154 RIEAEYREQIAGLRKDAE 171 (201)
Q Consensus 154 riE~eYrEqla~LrRDAE 171 (201)
.|+.+-..-+..||..+-
T Consensus 122 ~I~~ek~~a~~~l~~ei~ 139 (173)
T PRK13453 122 EINSQKERAIADINNQVS 139 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334443344444444433
No 95
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=33.45 E-value=61 Score=23.93 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=30.4
Q ss_pred HHHhHHHhhHHHHH---HHHHHHHHhhhHHHhhhhhhHHH-HHH
Q 028954 121 QLESEKACQRRDKM---EEIEAKVKALGDEQRATLDRIEA-EYR 160 (201)
Q Consensus 121 QLESEKa~rRREKm---EEiEaKikaLreEq~a~l~riE~-eYr 160 (201)
=||+||.....+.- .++++.|..||.+=-..++.|+. +|.
T Consensus 22 ~Leaek~~~eL~~seeY~eL~~ri~~lr~~ld~~~~~~d~~Df~ 65 (71)
T PF08663_consen 22 VLEAEKSEAELEESEEYQELEDRIEELRAELDDTLDEFDDDDFE 65 (71)
T ss_pred HHHhcCCHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 37889988766554 45788999999988888888875 443
No 96
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.14 E-value=1.2e+02 Score=21.59 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhH
Q 028954 130 RRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDA 170 (201)
Q Consensus 130 RREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDA 170 (201)
-+||+..+|.|++.+ ++....+++-.+.+..++..+..|-
T Consensus 4 i~e~l~~ie~~l~~~-~~~i~~lE~~~~~~e~~i~~~~~~l 43 (71)
T PF10779_consen 4 IKEKLNRIETKLDNH-EERIDKLEKRDAANEKDIKNLNKQL 43 (71)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888884 3444556666666666666665553
No 97
>PF10253 PRCC: Mitotic checkpoint regulator, MAD2B-interacting; InterPro: IPR018800 This is the highly conserved C-terminal domain of the renal papillary carcinoma protein PRCC. The function of this domain is not known.
Probab=31.85 E-value=51 Score=26.74 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 028954 155 IEAEYREQIAGLRKDAEAKEQKLAEQWSAK 184 (201)
Q Consensus 155 iE~eYrEqla~LrRDAE~KEqKlaEqW~~K 184 (201)
+-+--+-||.-|=.+|..+|..|.|+|+.-
T Consensus 140 ~~~krKHQit~L~~~A~~~e~eL~e~~a~~ 169 (182)
T PF10253_consen 140 IAQKRKHQITYLAHQAKENEEELEERWAQG 169 (182)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 336678899999999999999999999864
No 98
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=31.83 E-value=3.5e+02 Score=25.26 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhhHH
Q 028954 131 RDKMEEIEAKVKALGDE 147 (201)
Q Consensus 131 REKmEEiEaKikaLreE 147 (201)
-++..|+-++|.+|+.+
T Consensus 157 ~~~~~el~aei~~lk~~ 173 (294)
T COG1340 157 NEKLKELKAEIDELKKK 173 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 99
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=31.39 E-value=1.3e+02 Score=27.76 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=36.1
Q ss_pred hhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHH
Q 028954 114 RLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQK 176 (201)
Q Consensus 114 RL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqK 176 (201)
-..-++.|+ .+.|+++++.|.+++..|.+-...+..-...+.++++.+...-...+..
T Consensus 162 ~~~fl~~ql-----~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 219 (498)
T TIGR03007 162 AQRFIDEQI-----KTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLE 219 (498)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 344445444 4567889999999999987766555444455666666665554433333
No 100
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=30.63 E-value=3.8e+02 Score=23.63 Aligned_cols=13 Identities=8% Similarity=0.388 Sum_probs=9.1
Q ss_pred HHHHHHHHhccCC
Q 028954 187 RLTKFLEQMGCRP 199 (201)
Q Consensus 187 rL~kfleq~g~~~ 199 (201)
-|..|++++|+-.
T Consensus 203 TM~eL~~~l~ID~ 215 (221)
T PF10376_consen 203 TMGELIKRLGIDY 215 (221)
T ss_pred cHHHHHHHhCCCc
Confidence 4777788887654
No 101
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=30.62 E-value=5.1e+02 Score=25.17 Aligned_cols=86 Identities=14% Similarity=0.241 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHh--HHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHH
Q 028954 82 GENLLVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLES--EKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEY 159 (201)
Q Consensus 82 ~~~~~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLES--EKa~rRREKmEEiEaKikaLreEq~a~l~riE~eY 159 (201)
++-..+..+-+-..+|++....-...-.+..=..+.|+-+++. ++-..-.+..++|...|..||.++..+-++|+ .|
T Consensus 345 ~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~-~~ 423 (569)
T PRK04778 345 SELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLE-RY 423 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_pred HHHHhhhhh
Q 028954 160 REQIAGLRK 168 (201)
Q Consensus 160 rEqla~LrR 168 (201)
+.+|..++|
T Consensus 424 ~~~L~~ikr 432 (569)
T PRK04778 424 RNKLHEIKR 432 (569)
T ss_pred HHHHHHHHH
No 102
>PRK10203 hypothetical protein; Provisional
Probab=30.61 E-value=2e+02 Score=23.42 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=32.5
Q ss_pred HHhhhhhhhhhhhHHHHHHH--hHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHh
Q 028954 104 WAAHKKEAAWRLRRVELQLE--SEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIA 164 (201)
Q Consensus 104 w~aHKKEAaWRL~RvElQLE--SEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla 164 (201)
|++-+||+.= |..+=..++ .|+..+.+.++.+++.|++-+++. ..++. .+|+++|.
T Consensus 59 el~LrKE~~~-l~~~l~~~~d~~~~~~~~~k~L~~l~lr~~~~~~~-~~~~~---~~Y~~ki~ 116 (122)
T PRK10203 59 ELEQRREAIQ-LLDLLKGIREDDPQYQEVSRRLSLLELKLRQAGLS-TDFLR---GDYADKLL 116 (122)
T ss_pred HHHHHHHHHH-HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhh-hhhhH---HHHHHHHH
Confidence 5556666541 111112222 234346778999999999876543 33333 78998875
No 103
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.59 E-value=1.4e+02 Score=31.69 Aligned_cols=65 Identities=29% Similarity=0.422 Sum_probs=42.2
Q ss_pred hhhhhhhhhhHHHHHHHhHHH----hhHHHHHHHHHHH----------HHhhhH-----HHhhhhhhHHHHHHHHHhhhh
Q 028954 107 HKKEAAWRLRRVELQLESEKA----CQRRDKMEEIEAK----------VKALGD-----EQRATLDRIEAEYREQIAGLR 167 (201)
Q Consensus 107 HKKEAaWRL~RvElQLESEKa----~rRREKmEEiEaK----------ikaLre-----Eq~a~l~riE~eYrEqla~Lr 167 (201)
|-.++-=|+.+++.|++-+-+ -++|+||+|--+| --+|.| |.+..|..+++-.+.||..++
T Consensus 157 ~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~ 236 (916)
T KOG0249|consen 157 HSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMR 236 (916)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566688899999887765 3788999874332 112222 344556666677788888888
Q ss_pred hhHH
Q 028954 168 KDAE 171 (201)
Q Consensus 168 RDAE 171 (201)
+|.+
T Consensus 237 ~~k~ 240 (916)
T KOG0249|consen 237 HDKD 240 (916)
T ss_pred HHHH
Confidence 7754
No 104
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.23 E-value=3.4e+02 Score=22.94 Aligned_cols=79 Identities=24% Similarity=0.301 Sum_probs=40.7
Q ss_pred hhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHH---HHHHHHHHHH
Q 028954 114 RLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQ---WSAKHLRLTK 190 (201)
Q Consensus 114 RL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEq---W~~Kh~rL~k 190 (201)
-|.....+.+|..+-.-|..++. |..+..+ +++...|+.--.++..++..|+...+.-+++..+. ...+|.-=..
T Consensus 96 ~l~~y~~l~~s~~~f~~rk~l~~-e~~~~~l-~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~ 173 (189)
T PF10211_consen 96 TLDAYQTLYESSIAFGMRKALQA-EQGKQEL-EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEID 173 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666554444433 2222333 23455566666666667777766666655555442 3344444444
Q ss_pred HHHH
Q 028954 191 FLEQ 194 (201)
Q Consensus 191 fleq 194 (201)
||.+
T Consensus 174 ~lk~ 177 (189)
T PF10211_consen 174 FLKK 177 (189)
T ss_pred HHHH
Confidence 4443
No 105
>PHA03046 Hypothetical protein; Provisional
Probab=29.93 E-value=79 Score=26.78 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHh
Q 028954 86 LVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLES 124 (201)
Q Consensus 86 ~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLES 124 (201)
.....|+||+++.+ +|+|||--+|+
T Consensus 99 ~~~~~i~~c~~~~~--------------~i~RLE~H~ET 123 (142)
T PHA03046 99 LFQLSIKRCKSLNN--------------IIKRLENHTET 123 (142)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 34566788887765 68899988876
No 106
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=29.85 E-value=3.1e+02 Score=24.59 Aligned_cols=57 Identities=23% Similarity=0.407 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028954 133 KMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 133 KmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g 196 (201)
||.|+-+-|..|..|-.++|.-+|+. .|--.|+| =--|+|.=.+-|.|++..|+++-
T Consensus 151 Kl~elks~M~~LGKEA~aAm~aVEaQ--QQrlTlqR-----L~amVeaEr~Yhqrv~~ILd~l~ 207 (209)
T cd07607 151 KLDELKSSMNTLGKEATSAMLAVEDQ--QQQVTLQR-----LLAMVEAERAYHQRAADILDKLH 207 (209)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888888999999999999999954 23334444 23467777889999999999874
No 107
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=29.61 E-value=2.9e+02 Score=22.07 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=5.2
Q ss_pred HHHHHHHHHhh
Q 028954 91 MECCRELKEGH 101 (201)
Q Consensus 91 vecCrELEEG~ 101 (201)
.....|||.-+
T Consensus 70 LALLDElE~~~ 80 (139)
T PF13935_consen 70 LALLDELERAQ 80 (139)
T ss_pred HHHHHHHHHHH
Confidence 34445555533
No 108
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.34 E-value=1.3e+02 Score=29.70 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 028954 132 DKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKL 177 (201)
Q Consensus 132 EKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKl 177 (201)
.|.+|+|.||.+||-| ..-|.+...++.++|..|..+-..-++++
T Consensus 76 ~kasELEKqLaaLrqE-lq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 76 VTAAQMQKQYEEIRRE-LDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888533 23344555566666665555544444443
No 109
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=29.32 E-value=97 Score=21.89 Aligned_cols=36 Identities=33% Similarity=0.315 Sum_probs=26.4
Q ss_pred hhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 028954 143 ALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLA 178 (201)
Q Consensus 143 aLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKla 178 (201)
+|.++=..++..-+.+|+++|...--|.++.|.++-
T Consensus 3 al~~~v~~~l~~s~~~Y~~~l~~y~~~~~~~~A~~~ 38 (67)
T PF01099_consen 3 ALEDVVTKFLFGSPEEYKESLQKYNPPPEAVEAKLE 38 (67)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHCC---HHHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 455566678888999999999999999999998764
No 110
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.40 E-value=2.2e+02 Score=24.47 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhh
Q 028954 133 KMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRK 168 (201)
Q Consensus 133 KmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrR 168 (201)
+.+..+.++..|..+ +.-|+.||+..+.=+-|
T Consensus 119 ~~e~Le~e~~~L~~~----~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 119 RNEELEKELEKLRQR----LSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 555555555555444 35689999988876644
No 111
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=27.91 E-value=4.2e+02 Score=23.26 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHhhhhhhhhh-hhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHH
Q 028954 84 NLLVSELMECCRELKEGHRAWAAHKKEAAWR-LRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQ 162 (201)
Q Consensus 84 ~~~~~eLvecCrELEEG~raw~aHKKEAaWR-L~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEq 162 (201)
+.....|..++|.+=+.-..+++.=|...=+ ....+ ...-.|-.----|..|+|+.++-|+-|.. +| .=|.+
T Consensus 116 S~~~~~L~~Ask~V~~At~~LVaaak~~~~~~~e~~~-~~d~s~l~~~~~k~~emE~Qv~IL~lE~~-----L~-~ar~~ 188 (200)
T smart00307 116 SQAQDRLQAASKAVTNATANLVAAVKSGMIFDEEQEE-EEDFSKLSLHEGKTQEMEQQVEILKLENE-----LE-AARKK 188 (200)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchhccchHHHHHHHHHHHHHHHHHHHH-----HH-HHHHH
Confidence 3456789999999998888888776655422 11111 12223333344578899999999987653 22 34788
Q ss_pred Hhhhhhh
Q 028954 163 IAGLRKD 169 (201)
Q Consensus 163 la~LrRD 169 (201)
|+.|||.
T Consensus 189 L~~lRk~ 195 (200)
T smart00307 189 LAEIRKQ 195 (200)
T ss_pred HHHHHHH
Confidence 9999986
No 112
>smart00338 BRLZ basic region leucin zipper.
Probab=26.90 E-value=2.1e+02 Score=19.63 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=20.0
Q ss_pred HHHHHHHhHHHhhH--HHHHHHHHHHHHhhhHHHhh
Q 028954 117 RVELQLESEKACQR--RDKMEEIEAKVKALGDEQRA 150 (201)
Q Consensus 117 RvElQLESEKa~rR--REKmEEiEaKikaLreEq~a 150 (201)
|.+.-=+|=..||. +..+.++|.++..|..+-..
T Consensus 9 R~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~ 44 (65)
T smart00338 9 RRERNREAARRSRERKKAEIEELERKVEQLEAENER 44 (65)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444544 45567888888887765433
No 113
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.68 E-value=4.1e+02 Score=25.73 Aligned_cols=64 Identities=28% Similarity=0.254 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHH---HHHHHHhhhHHHhhhhhh
Q 028954 91 MECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKMEE---IEAKVKALGDEQRATLDR 154 (201)
Q Consensus 91 vecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKmEE---iEaKikaLreEq~a~l~r 154 (201)
-+|-|.=||-++-.++-=||-.-.|+..|..|-.--..-+|.--|| +|.|+|.|-||-+++..|
T Consensus 333 ~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 333 GELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777776666666666666655432222222222222 556666666665555444
No 114
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=26.60 E-value=3.6e+02 Score=22.76 Aligned_cols=8 Identities=50% Similarity=0.758 Sum_probs=3.7
Q ss_pred hHHHHHHH
Q 028954 116 RRVELQLE 123 (201)
Q Consensus 116 ~RvElQLE 123 (201)
+||+-.|.
T Consensus 22 krVee~l~ 29 (149)
T PF15346_consen 22 KRVEEELN 29 (149)
T ss_pred HHHHHHHh
Confidence 34444444
No 115
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=26.59 E-value=2.1e+02 Score=26.62 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHhhhHHH
Q 028954 129 QRRDKMEEIEAKVKALGDEQ 148 (201)
Q Consensus 129 rRREKmEEiEaKikaLreEq 148 (201)
|+.+.|+|||-.||.|-||-
T Consensus 87 rKKaRm~eme~~i~dL~een 106 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEEN 106 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999998774
No 116
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=25.76 E-value=2e+02 Score=24.15 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhHHHHhhhhhhhhhh
Q 028954 91 MECCRELKEGHRAWAAHKKEAAWRL 115 (201)
Q Consensus 91 vecCrELEEG~raw~aHKKEAaWRL 115 (201)
.+....+-++++....-.+-|..-|
T Consensus 53 ~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 53 MQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3556788888888877777777764
No 117
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.10 E-value=3.4e+02 Score=27.16 Aligned_cols=78 Identities=19% Similarity=0.364 Sum_probs=46.3
Q ss_pred hhhhhhh-hhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHH---------hhhhhhHHHHHHHHHhhhhhhHHHHHHH
Q 028954 107 HKKEAAW-RLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQ---------RATLDRIEAEYREQIAGLRKDAEAKEQK 176 (201)
Q Consensus 107 HKKEAaW-RL~RvElQLESEKa~rRREKmEEiEaKikaLreEq---------~a~l~riE~eYrEqla~LrRDAE~KEqK 176 (201)
.|.+++- -+.=++.||+ .-+.+++..|.++...|.+. .+.+++| ++++.|++.|+ .++..
T Consensus 260 ~k~~~a~~a~~fL~~qL~-----~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~-~~l~~ql~~l~----~~~~~ 329 (726)
T PRK09841 260 RQAAQDSQSLEFLQRQLP-----EVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQI-VNVDNQLNELT----FREAE 329 (726)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHHHHHHHHHH----HHHHH
Confidence 3444333 3455665554 34566777777777776643 3345554 45666666654 45667
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028954 177 LAEQWSAKHLRLTKFLEQ 194 (201)
Q Consensus 177 laEqW~~Kh~rL~kfleq 194 (201)
|...+..+|-.+..+-.|
T Consensus 330 l~~~~~~~hP~v~~l~~~ 347 (726)
T PRK09841 330 ISQLYKKDHPTYRALLEK 347 (726)
T ss_pred HHHHhcccCchHHHHHHH
Confidence 777778788777655444
No 118
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=25.00 E-value=5.6e+02 Score=23.74 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=9.9
Q ss_pred HhhhhhhHHHHHHH
Q 028954 163 IAGLRKDAEAKEQK 176 (201)
Q Consensus 163 la~LrRDAE~KEqK 176 (201)
+..|.||.+.++..
T Consensus 357 l~~L~Re~~~~~~~ 370 (498)
T TIGR03007 357 LTQLNRDYEVNKSN 370 (498)
T ss_pred HHHHHHHHHHHHHH
Confidence 35678888887753
No 119
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=24.88 E-value=2.2e+02 Score=22.88 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=26.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028954 158 EYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQM 195 (201)
Q Consensus 158 eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~ 195 (201)
+....|.+|+.|.+..+.+-.+.=-++--..++|+|+-
T Consensus 25 ~~Er~L~~L~~~l~~~~~~~~~kk~~~kYh~VRFfERk 62 (114)
T PF10153_consen 25 EKERELEALKRELEEAERKEKEKKMAKKYHMVRFFERK 62 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888777776666666556666778999864
No 120
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.77 E-value=4.2e+02 Score=22.20 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=42.5
Q ss_pred HHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHH------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 028954 122 LESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYR------EQIAGLRKDAEAKEQKLAEQWSAKHLRLTK 190 (201)
Q Consensus 122 LESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYr------Eqla~LrRDAE~KEqKlaEqW~~Kh~rL~k 190 (201)
|-.|+-.....=..++-+++-.||++-.+.-.-+.+.|. +.+..|..+-..=-+||.|+=..-+.+++|
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444466777777777776666655555552 446666666666667777776666666665
No 121
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=24.43 E-value=1.4e+02 Score=28.67 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028954 151 TLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQM 195 (201)
Q Consensus 151 ~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~ 195 (201)
.|+.+-.++..++..+|++++ .+...++|...+..+.+-++++
T Consensus 346 ~L~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 388 (448)
T PF05761_consen 346 ELEELLEELQDHLDQLRSSSE--LRPDISELRKERRELRREMKEL 388 (448)
T ss_dssp HHHHHCHHHHCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcccccchh--hHHHHHHHHHHHHHHHHHHhhh
Confidence 344444555566666666654 4556788999999998887743
No 122
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=24.42 E-value=3.4e+02 Score=21.37 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 028954 175 QKLAEQWSAKHLRLTKFLEQMGC 197 (201)
Q Consensus 175 qKlaEqW~~Kh~rL~kfleq~g~ 197 (201)
.++.+.-..=+..|.+.|+..|+
T Consensus 88 ~~~~~g~~~~~~~l~~~L~~~Gv 110 (165)
T PF01025_consen 88 ESLLEGLEMILKQLEDILEKNGV 110 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Confidence 35555555555666666666554
No 123
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.20 E-value=1.4e+02 Score=24.26 Aligned_cols=45 Identities=33% Similarity=0.559 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhH------HHhhhhh----hHHH---HHHHHHhhhhhhHHHHHHH
Q 028954 132 DKMEEIEAKVKALGD------EQRATLD----RIEA---EYREQIAGLRKDAEAKEQK 176 (201)
Q Consensus 132 EKmEEiEaKikaLre------Eq~a~l~----riE~---eYrEqla~LrRDAE~KEqK 176 (201)
++.+++|+++|.|=. .+..+|. .+|. .+.++|..+...++..+..
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~ 71 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456777777777643 3333332 2332 2455555555555555544
No 124
>PRK04863 mukB cell division protein MukB; Provisional
Probab=23.88 E-value=8.8e+02 Score=27.21 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhHHH--------hhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 028954 114 RLRRVELQLESEKA--------CQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKH 185 (201)
Q Consensus 114 RL~RvElQLESEKa--------~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh 185 (201)
+++.|+.|++.-+. .+.-.+++.....++.|.+........+ .+.++++..++.+.+..|+++ +.+..++
T Consensus 322 rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeL-eeleeeleeleeEleelEeeL-eeLqeqL 399 (1486)
T PRK04863 322 AESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVV-EEADEQQEENEARAEAAEEEV-DELKSQL 399 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_pred HHHHHHHHHh
Q 028954 186 LRLTKFLEQM 195 (201)
Q Consensus 186 ~rL~kfleq~ 195 (201)
..+...+++.
T Consensus 400 aelqqel~el 409 (1486)
T PRK04863 400 ADYQQALDVQ 409 (1486)
T ss_pred HHHHHHHHHH
No 125
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.81 E-value=3.9e+02 Score=21.51 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=14.3
Q ss_pred HhhHHHHHHHHHHHHHhhhHHHh
Q 028954 127 ACQRRDKMEEIEAKVKALGDEQR 149 (201)
Q Consensus 127 a~rRREKmEEiEaKikaLreEq~ 149 (201)
...-|+.+.+++..++.|+.|=+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666665543
No 126
>PRK11519 tyrosine kinase; Provisional
Probab=23.63 E-value=7.5e+02 Score=24.74 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=8.9
Q ss_pred hhhhhhHHHHHH
Q 028954 164 AGLRKDAEAKEQ 175 (201)
Q Consensus 164 a~LrRDAE~KEq 175 (201)
..|.||++.++.
T Consensus 373 ~~L~Re~~~~~~ 384 (719)
T PRK11519 373 VRLTRDVESGQQ 384 (719)
T ss_pred HHHHHHHHHHHH
Confidence 457888888775
No 127
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.54 E-value=3e+02 Score=24.43 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028954 131 RDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQ 194 (201)
Q Consensus 131 REKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq 194 (201)
.+|+++|..++..++.|=....+-.=+.|... .+.|+.+|-...+++.+
T Consensus 80 ~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~---------------i~~w~~~~pew~~~Ir~ 128 (257)
T PF11348_consen 80 EDKAEELAEELEDIKTEFEQEKQDFLANYDQA---------------IEEWIDRHPEWADIIRR 128 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHChHHHHHHHh
Confidence 46888888888777776665555555555433 45688888777777654
No 128
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=23.37 E-value=6e+02 Score=23.52 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=39.4
Q ss_pred HHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028954 118 VELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKL-AEQWSAKHLRLTKFLEQ 194 (201)
Q Consensus 118 vElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKl-aEqW~~Kh~rL~kfleq 194 (201)
++.|..+|+..+.+.-.-|-|+.-..+|-+-..-..+|.++-..|=.-+|=++|++-.++ ++.-. +...+..|+..
T Consensus 223 i~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~-~~p~~~~~~~~ 299 (334)
T PRK11029 223 IYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFS-QDPDFYAFIRS 299 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 556666666544323233344444444555555556666666555555666666666554 44443 44445555443
No 129
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.34 E-value=8.9e+02 Score=26.83 Aligned_cols=101 Identities=22% Similarity=0.299 Sum_probs=58.4
Q ss_pred HHHHHHHHhhHHHHh------------------hhhhhhhhhhHHHHHHHhHHHhhH--HHHHHHHHHHHHhhhHHHh--
Q 028954 92 ECCRELKEGHRAWAA------------------HKKEAAWRLRRVELQLESEKACQR--RDKMEEIEAKVKALGDEQR-- 149 (201)
Q Consensus 92 ecCrELEEG~raw~a------------------HKKEAaWRL~RvElQLESEKa~rR--REKmEEiEaKikaLreEq~-- 149 (201)
.+|+|.++-.|.|.. --+|+.-.|.-++++-.+.+..-. ++++.++|++++.|++.=.
T Consensus 342 ~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~ 421 (1141)
T KOG0018|consen 342 EFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERL 421 (1141)
T ss_pred HHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776651 123334445556666666555444 4678899999998876431
Q ss_pred --------hhhhhHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028954 150 --------ATLDRIEAEYREQ---IAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 150 --------a~l~riE~eYrEq---la~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g 196 (201)
+.+.-.++.|.|+ +..|++|...-+-+-++ ....|+..++|++
T Consensus 422 ~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e----~n~eL~~~~~ql~ 475 (1141)
T KOG0018|consen 422 DKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYE----LNEELVEVLDQLL 475 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHH
Confidence 2233344566665 45566665544433332 3456777777765
No 130
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=23.28 E-value=4.1e+02 Score=21.58 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=9.7
Q ss_pred hhhhhhhhhhhHHHHHHH
Q 028954 106 AHKKEAAWRLRRVELQLE 123 (201)
Q Consensus 106 aHKKEAaWRL~RvElQLE 123 (201)
..+.+|.=.+...|.+|.
T Consensus 61 ~~~~eA~~~~~e~e~~l~ 78 (173)
T PRK13460 61 ELRLEAEALLKDYEARLN 78 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555554
No 131
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=23.23 E-value=4.6e+02 Score=22.15 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHH
Q 028954 129 QRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKE 174 (201)
Q Consensus 129 rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KE 174 (201)
+-+...+..+..|.+.+..=.---.+|+ -|+|.+..|||.+|.-.
T Consensus 97 ~l~~~l~~~~~~ia~~~raIarn~a~id-~~~er~~~l~r~~ea~~ 141 (158)
T PF09486_consen 97 ALRQALRAAEDEIAATRRAIARNDARID-VCRERIDRLRRAAEAAA 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhH
Confidence 3455666677777777665555555666 69999999999887644
No 132
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=22.84 E-value=28 Score=33.75 Aligned_cols=65 Identities=26% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhh---hhhHHHHHHHHHhhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHhc
Q 028954 131 RDKMEEIEAKVKALGDEQRAT---LDRIEAEYREQIAGLRKDAEAKE-----QKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 131 REKmEEiEaKikaLreEq~a~---l~riE~eYrEqla~LrRDAE~KE-----qKlaEqW~~Kh~rL~kfleq~g 196 (201)
.|..++|+.|+..|+++=... +..+|.+|+|+|..|.||.-... ..|.++... +.++..||+.|.
T Consensus 174 ~e~r~~i~~~~~~l~~~l~~~l~~l~~~e~e~~e~l~~L~~~~~~~~v~~~~~~l~~~y~~-~~~v~~yL~~v~ 246 (509)
T PF13654_consen 174 EEEREEIEEKIEELQEELQEILRQLRELEREAREKLKELNREIALFAVEPLIEELREKYAD-NPKVLAYLEAVK 246 (509)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 445677888888888765444 56679999999999999853322 234444432 556777777653
No 133
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=22.82 E-value=5.2e+02 Score=22.66 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=7.8
Q ss_pred HHHHHhhhhhhHHHHHHHH
Q 028954 159 YREQIAGLRKDAEAKEQKL 177 (201)
Q Consensus 159 YrEqla~LrRDAE~KEqKl 177 (201)
++++|..-|+|-+...++|
T Consensus 108 lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 108 LQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333
No 134
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=22.82 E-value=2.1e+02 Score=24.73 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHH
Q 028954 153 DRIEAEYREQIAGLRKDAEAKEQKL 177 (201)
Q Consensus 153 ~riE~eYrEqla~LrRDAE~KEqKl 177 (201)
.+||.--|| |.-|+.--..||+.+
T Consensus 91 kkID~vNre-Lkpl~~~cqKKEkEy 114 (159)
T PF04949_consen 91 KKIDSVNRE-LKPLGQSCQKKEKEY 114 (159)
T ss_pred HHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 344443332 334444444444443
No 135
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=22.68 E-value=1.8e+02 Score=25.98 Aligned_cols=37 Identities=30% Similarity=0.531 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhh
Q 028954 130 RRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLR 167 (201)
Q Consensus 130 RREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~Lr 167 (201)
||.|-.||.-||.-|..|..+.-.+|| +-+.+|..||
T Consensus 213 ~k~~~~e~~~r~~~leken~~lr~~v~-~l~~el~~~~ 249 (269)
T KOG3119|consen 213 RKQKEDEMAHRVAELEKENEALRTQVE-QLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 444556777777777666665555555 2333344443
No 136
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.63 E-value=4.3e+02 Score=21.58 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=28.2
Q ss_pred HHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHh
Q 028954 92 ECCRELKEGHRAWAAHKKEAAWRLRRVELQLES 124 (201)
Q Consensus 92 ecCrELEEG~raw~aHKKEAaWRL~RvElQLES 124 (201)
...+.||.-..+...-||+-+=||.+|.-+|+.
T Consensus 47 ~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe 79 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDE 79 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 445889999999999999999999999966653
No 137
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.46 E-value=5.2e+02 Score=22.51 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=25.0
Q ss_pred HHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhh
Q 028954 125 EKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRK 168 (201)
Q Consensus 125 EKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrR 168 (201)
+.+.+-|.+.+.++.||+. ++.-.+.||+++...|.
T Consensus 18 d~~~~l~~r~~~l~kKi~~--------ld~E~~~ak~~~k~~~~ 53 (211)
T PTZ00464 18 DASKRIGGRSEVVDARINK--------IDAELMKLKEQIQRTRG 53 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcc
Confidence 4456777888888888843 44445668888877665
No 138
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.16 E-value=1.1e+03 Score=25.94 Aligned_cols=107 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHh
Q 028954 85 LLVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIA 164 (201)
Q Consensus 85 ~~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla 164 (201)
....+++....++++.... .++.+....-.+-++.-..++...-.+.++++++++.+|+.-..--..+=..+-++|+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~ 343 (1353)
T TIGR02680 266 RRATRLRSAQTQYDQLSRD--LGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAE 343 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028954 165 GLRKDAEAKEQKLAEQWSAKHLRLTKFLEQ 194 (201)
Q Consensus 165 ~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq 194 (201)
.+..+++.|+.++.++ ..+...+..=+++
T Consensus 344 ~~~~~a~~~~~~~~~a-~~~~e~~~~~~~~ 372 (1353)
T TIGR02680 344 ALQAAAADARQAIREA-ESRLEEERRRLDE 372 (1353)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
No 139
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=22.09 E-value=1.7e+02 Score=18.51 Aligned_cols=11 Identities=45% Similarity=0.718 Sum_probs=6.6
Q ss_pred HHHHHHHhhhh
Q 028954 157 AEYREQIAGLR 167 (201)
Q Consensus 157 ~eYrEqla~Lr 167 (201)
+.||+++..|+
T Consensus 24 a~~Rd~i~~l~ 34 (36)
T PF02151_consen 24 ARLRDQIKALK 34 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35666666665
No 140
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.07 E-value=3.2e+02 Score=27.15 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHH
Q 028954 93 CCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDE 147 (201)
Q Consensus 93 cCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaKikaLreE 147 (201)
-.++.|+-.+.|.+|+.+-.=|.+.|+ .++++++++.+|++|++.
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp----------~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLP----------NKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcC----------CchhHHHHHHHHHHHHhc
Confidence 346667777776666554443444443 244555555555555553
No 141
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.95 E-value=4.3e+02 Score=21.29 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHH----HhhHHHHHHHHHHHHHhhhH
Q 028954 87 VSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEK----ACQRRDKMEEIEAKVKALGD 146 (201)
Q Consensus 87 ~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEK----a~rRREKmEEiEaKikaLre 146 (201)
+.+|=.-..+|.+--......-|...=.|+.|..++-.+. -...+++.+++++|+..||.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444666666666666666666666666655443222 12233445556666666665
No 142
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=21.92 E-value=4.8e+02 Score=21.90 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=11.9
Q ss_pred HHHHHhhhH---HHhhhhhhHHHHHHHHHh
Q 028954 138 EAKVKALGD---EQRATLDRIEAEYREQIA 164 (201)
Q Consensus 138 EaKikaLre---Eq~a~l~riE~eYrEqla 164 (201)
++||+++.+ .+...+..+..+|+.++.
T Consensus 99 ~aka~a~~~~m~~~~~~~~~~r~k~~~~m~ 128 (160)
T COG3678 99 EAKARAQAEKMENQRQALRELRVKSDNQMY 128 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555432 333444444444444443
No 143
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=21.81 E-value=7.9e+02 Score=24.88 Aligned_cols=77 Identities=26% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhH------HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHH
Q 028954 89 ELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQR------RDKMEEIEAKVKALGDEQRATLDRIEAEYREQ 162 (201)
Q Consensus 89 eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rR------REKmEEiEaKikaLreEq~a~l~riE~eYrEq 162 (201)
++.+.-+|++..-......++|-. +|+.||-.|+.|.| |.++.|..+-+|-+.-|--...+---
T Consensus 372 ~ie~L~~el~~~e~~lqEer~E~q----kL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ------ 441 (546)
T PF07888_consen 372 EIEKLSRELQMLEEHLQEERMERQ----KLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ------ 441 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred HhhhhhhHHHHHHHH
Q 028954 163 IAGLRKDAEAKEQKL 177 (201)
Q Consensus 163 la~LrRDAE~KEqKl 177 (201)
.|.+|.+.=|++|
T Consensus 442 --eL~~yi~~Le~r~ 454 (546)
T PF07888_consen 442 --ELLEYIERLEQRL 454 (546)
T ss_pred --HHHHHHHHHHHHH
No 144
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.57 E-value=1.6e+02 Score=24.61 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=33.7
Q ss_pred hhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 028954 143 ALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWS 182 (201)
Q Consensus 143 aLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~ 182 (201)
.|=.||-+.++.|=++|..+...||.+--+|...|--..+
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~ 82 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLT 82 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4778999999999999999999999998888877765543
No 145
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.32 E-value=2.6e+02 Score=28.04 Aligned_cols=60 Identities=23% Similarity=0.394 Sum_probs=42.7
Q ss_pred hHHHHhhh-----------------hhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHH
Q 028954 101 HRAWAAHK-----------------KEAAWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQI 163 (201)
Q Consensus 101 ~raw~aHK-----------------KEAaWRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEql 163 (201)
.+-|.+-+ |+--|||+ .|-+- ..--|..|.+|..++.-|...+..+.-+|| +||-.+
T Consensus 312 ~~~W~QA~~dnp~s~kliPVpvvGF~dL~~R~K---~Q~q~--~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~-~~k~r~ 385 (508)
T KOG3091|consen 312 QRIWRQAMKDNPPSNKLIPVPVVGFEDLRQRLK---VQDQE--VKQHRIRINAIGERVTELQKHHADAVAKIE-EAKNRH 385 (508)
T ss_pred HHHHHHHhhcCCCcccccceeccchHHHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHH
Confidence 36788877 34455554 44333 334577799999999999999999999998 566555
Q ss_pred hhh
Q 028954 164 AGL 166 (201)
Q Consensus 164 a~L 166 (201)
..|
T Consensus 386 ~~L 388 (508)
T KOG3091|consen 386 VEL 388 (508)
T ss_pred HHH
Confidence 444
No 146
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=21.16 E-value=3e+02 Score=19.28 Aligned_cols=24 Identities=25% Similarity=0.453 Sum_probs=12.9
Q ss_pred HHHHHHHHH-----HHHHhhhHHHhhhhh
Q 028954 130 RRDKMEEIE-----AKVKALGDEQRATLD 153 (201)
Q Consensus 130 RREKmEEiE-----aKikaLreEq~a~l~ 153 (201)
.||.+|++. +.+..|..+-...+.
T Consensus 13 ~rE~le~~~~~~~~~~L~~l~~~~~~~~~ 41 (78)
T PF07743_consen 13 LREELEEAQNSDDEAELEELKKEIEERIK 41 (78)
T ss_dssp HHHHHHHHCCCTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 578888773 445554444333333
No 147
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=21.09 E-value=1.5e+02 Score=22.62 Aligned_cols=26 Identities=27% Similarity=0.658 Sum_probs=17.4
Q ss_pred hhHHHHHHHhHHHhhHHHHHHHHHHHHHhhh
Q 028954 115 LRRVELQLESEKACQRRDKMEEIEAKVKALG 145 (201)
Q Consensus 115 L~RvElQLESEKa~rRREKmEEiEaKikaLr 145 (201)
|.||...++ |-|+|+.|+.+|+|.|-
T Consensus 3 leKi~~eie-----K~k~Kiae~Q~rlK~Le 28 (83)
T PF14193_consen 3 LEKIRAEIE-----KTKEKIAELQARLKELE 28 (83)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 455554443 45688888888888873
No 148
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=21.08 E-value=3e+02 Score=19.15 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=27.7
Q ss_pred HhhHHHHHHHHHHHHHhhhHHHhhhhhhHHH--HHHHHHhhhhhhH
Q 028954 127 ACQRRDKMEEIEAKVKALGDEQRATLDRIEA--EYREQIAGLRKDA 170 (201)
Q Consensus 127 a~rRREKmEEiEaKikaLreEq~a~l~riE~--eYrEqla~LrRDA 170 (201)
+..-+..|..|+.+|..|+.-+...|..... +.+++|..|-.+.
T Consensus 9 v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i 54 (103)
T PF00804_consen 9 VQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEI 54 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence 3445667777888777777777777766654 3555555554443
No 149
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=20.98 E-value=8.7e+02 Score=24.78 Aligned_cols=46 Identities=33% Similarity=0.280 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhhHHH-HhhhhhhhhhhhHHHHHHHhHHHhhHHHHHH
Q 028954 86 LVSELMECCRELKEGHRAW-AAHKKEAAWRLRRVELQLESEKACQRRDKME 135 (201)
Q Consensus 86 ~~~eLvecCrELEEG~raw-~aHKKEAaWRL~RvElQLESEKa~rRREKmE 135 (201)
.+.||---.+||----.+. .+|+|| |+.|--.||-||..|-|=.||
T Consensus 570 s~delr~qi~el~~ive~lk~~~~ke----l~kl~~dleeek~mr~~leme 616 (627)
T KOG4348|consen 570 SLDELRAQIIELLCIVEALKKDHGKE----LEKLRKDLEEEKTMRSNLEME 616 (627)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHhh
Confidence 3456655555554333332 367776 677778889999999998886
No 150
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.72 E-value=1.1e+03 Score=25.71 Aligned_cols=109 Identities=23% Similarity=0.401 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHH--------HHHhHHHhhHHHHH-HHHHHHHHhhhHHHhhhhhhHHH
Q 028954 87 VSELMECCRELKEGHRAWAAHKKEAAWRLRRVEL--------QLESEKACQRRDKM-EEIEAKVKALGDEQRATLDRIEA 157 (201)
Q Consensus 87 ~~eLvecCrELEEG~raw~aHKKEAaWRL~RvEl--------QLESEKa~rRREKm-EEiEaKikaLreEq~a~l~riE~ 157 (201)
|.+|++-.+|+.+--+-.+..|-+--=+|+.+-. +-+=+++.+.||-+ .-|+.++..|-.|-...++-|+
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eid- 566 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEID- 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 4566666777777666666666554444443321 22334444444433 3355555556555555666665
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHhc
Q 028954 158 EYREQIAGLRKDAEAKEQKLAEQWSAKHLRLT----KFLEQMG 196 (201)
Q Consensus 158 eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~----kfleq~g 196 (201)
-+.-||..||-|--.+--+.-+-..++..+|. |.||-||
T Consensus 567 i~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~ 609 (1118)
T KOG1029|consen 567 IFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIG 609 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777766666666666666666663 5555554
No 151
>PTZ00121 MAEBL; Provisional
Probab=20.60 E-value=1.3e+03 Score=27.17 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=5.3
Q ss_pred HHHHHHHHhhHHH
Q 028954 92 ECCRELKEGHRAW 104 (201)
Q Consensus 92 ecCrELEEG~raw 104 (201)
+-.|..||++++-
T Consensus 1125 e~arr~eeARrae 1137 (2084)
T PTZ00121 1125 EDARKAEEARKAE 1137 (2084)
T ss_pred HHHHHHHHHhhHH
Confidence 3344444444333
No 152
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=20.56 E-value=2.5e+02 Score=22.34 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=8.7
Q ss_pred hhhhhHHHHHHHhH
Q 028954 112 AWRLRRVELQLESE 125 (201)
Q Consensus 112 aWRL~RvElQLESE 125 (201)
.=|...||.-|+.=
T Consensus 42 ~~rv~GLe~AL~~v 55 (115)
T PF06476_consen 42 QHRVAGLEKALEEV 55 (115)
T ss_pred HHHHHHHHHHHHHH
Confidence 44667777776643
No 153
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=20.51 E-value=95 Score=26.52 Aligned_cols=47 Identities=30% Similarity=0.556 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhHH--HHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHH
Q 028954 91 MECCRELKEGHRA--WAAHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAK 140 (201)
Q Consensus 91 vecCrELEEG~ra--w~aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaK 140 (201)
.+-||.|. |+|- -.+.|+=+.|.=+.-|.. -++..++|+|+|+|+.+
T Consensus 111 ~dscRdL~-GRRlr~v~~~k~l~~~~~~~~er~--k~~~e~~~~k~~~l~~~ 159 (162)
T PF13019_consen 111 FDSCRDLS-GRRLRTVNEEKKLAEWLEKKPERE--KKEKEKRRKKLEKLVEM 159 (162)
T ss_pred cccccCCC-CcChhhhHHHHHHHHHHhcChhHH--HHHHHHHHHHHHHHHHH
Confidence 57799995 8763 233344445543333322 23334455666666554
No 154
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=20.33 E-value=81 Score=27.40 Aligned_cols=20 Identities=40% Similarity=0.752 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHhhhhhhHHH
Q 028954 153 DRIEAEYREQIAGLRKDAEA 172 (201)
Q Consensus 153 ~riE~eYrEqla~LrRDAE~ 172 (201)
.+.|++||-.+..+|.-||.
T Consensus 202 q~~Ea~fR~~l~r~r~naE~ 221 (281)
T PF06472_consen 202 QRLEADFRYALVRLRENAES 221 (281)
T ss_pred HHhhchHHHHHHHHHHhHHH
Confidence 56788888888888888774
No 155
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=20.19 E-value=6.3e+02 Score=22.58 Aligned_cols=54 Identities=33% Similarity=0.553 Sum_probs=29.0
Q ss_pred HhhHHHHHHH-----HHHHHHhhhHHHhh--------------hhhhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 028954 127 ACQRRDKMEE-----IEAKVKALGDEQRA--------------TLDRIEAEYREQIAGLRKDAEAKEQKLAEQ 180 (201)
Q Consensus 127 a~rRREKmEE-----iEaKikaLreEq~a--------------~l~riE~eYrEqla~LrRDAE~KEqKlaEq 180 (201)
+|.|||.+|- .|..++.||--|+. .|.+.=.|+.|++-.|.-|--.=|||--|.
T Consensus 18 a~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEE 90 (205)
T PF12240_consen 18 ACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLEE 90 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666653 55666666554432 244444566666666655554445544433
No 156
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=20.18 E-value=1e+02 Score=27.01 Aligned_cols=55 Identities=36% Similarity=0.504 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028954 133 KMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQMGC 197 (201)
Q Consensus 133 KmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g~ 197 (201)
|++.-++|++-|=+|-.|.++++-=+||....||=+--|.| +|..|-||.+|.+-
T Consensus 116 ki~~e~skl~dldeEtra~vekmmfdq~qk~~~~p~sde~~----------~~d~Lkk~~~~~~~ 170 (179)
T KOG2265|consen 116 KIEPEESKLSDLDEETRATVEKMMFDQRQKSMGLPTSDELK----------KHDMLKKFMDQHPE 170 (179)
T ss_pred ccChhhhhhhhccHHHHHhhhccchhHHHhhcCCCCCchhh----------HHHHHHHHHHhCCC
Confidence 34444679999999999999999999999999987766654 78899999999764
No 157
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.08 E-value=2.9e+02 Score=24.59 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHhhhH
Q 028954 128 CQRRDKMEEIEAKVKALGD 146 (201)
Q Consensus 128 ~rRREKmEEiEaKikaLre 146 (201)
.|-++-|.|+..++++.|+
T Consensus 75 ~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 75 KELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
Done!