Query 028954
Match_columns 201
No_of_seqs 53 out of 55
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 08:00:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_A Leucine-rich immune mol 91.2 2.2 7.6E-05 37.3 11.1 70 95-168 370-449 (487)
2 3oja_A Leucine-rich immune mol 89.6 1.7 6E-05 38.0 9.1 21 175-195 441-461 (487)
3 3o0z_A RHO-associated protein 89.5 3.2 0.00011 34.3 10.1 90 85-174 41-138 (168)
4 3oja_B Anopheles plasmodium-re 85.6 8.1 0.00028 34.3 11.0 27 151-177 548-574 (597)
5 3lay_A Zinc resistance-associa 77.8 3 0.0001 34.1 4.9 30 120-149 66-95 (175)
6 3u59_A Tropomyosin beta chain; 76.7 7.1 0.00024 28.6 6.3 23 134-156 4-26 (101)
7 3u1c_A Tropomyosin alpha-1 cha 75.7 7.7 0.00026 28.7 6.3 23 134-156 4-26 (101)
8 3v6i_B V-type ATP synthase, su 72.2 17 0.00059 28.2 7.6 34 131-164 30-63 (105)
9 2y39_A Nickel and cobalt resis 65.0 8.2 0.00028 30.3 4.5 42 144-185 21-62 (118)
10 1d7m_A Cortexillin I; coiled-c 62.3 51 0.0017 25.3 10.1 72 113-184 4-97 (101)
11 4i0x_A ESAT-6-like protein MAB 62.3 37 0.0013 23.7 7.5 64 133-196 4-67 (94)
12 2z5i_I TM, tropomyosin alpha-1 59.3 10 0.00036 24.7 3.5 24 133-156 4-27 (40)
13 2f42_A STIP1 homology and U-bo 57.5 22 0.00074 28.9 5.9 57 129-195 33-94 (179)
14 3mq7_A Bone marrow stromal ant 57.4 22 0.00074 28.2 5.7 49 118-175 58-106 (121)
15 2efl_A Formin-binding protein 54.1 83 0.0028 25.2 14.3 37 86-122 103-139 (305)
16 2dpr_A CON-T(K7GLA); conantoxi 52.8 6.8 0.00023 23.6 1.6 19 156-175 2-20 (26)
17 2b9c_A Striated-muscle alpha t 50.1 48 0.0016 26.2 6.7 52 110-166 77-141 (147)
18 2p2u_A HOST-nuclease inhibitor 49.8 45 0.0015 26.6 6.6 54 134-188 25-79 (171)
19 1dh3_A Transcription factor CR 49.4 56 0.0019 21.8 6.1 38 115-152 3-42 (55)
20 3fav_A ESAT-6-like protein ESX 49.3 53 0.0018 22.7 6.2 57 140-196 18-74 (101)
21 3hfe_A Potassium voltage-gated 48.8 6.9 0.00024 24.6 1.3 11 113-123 10-20 (31)
22 1jnm_A Proto-oncogene C-JUN; B 48.3 36 0.0012 22.8 5.0 38 129-167 19-56 (62)
23 3q8t_A Beclin-1; autophagy, AT 44.6 90 0.0031 22.9 9.0 63 133-195 5-76 (96)
24 1ic2_A Tropomyosin alpha chain 43.7 42 0.0015 23.5 5.0 21 136-156 3-23 (81)
25 3vkg_A Dynein heavy chain, cyt 42.9 2.3E+02 0.0079 32.4 12.6 45 96-142 1942-1986(3245)
26 3mq9_A Bone marrow stromal ant 42.4 1.3E+02 0.0043 26.1 8.7 47 97-144 406-455 (471)
27 3f1i_H Hepatocyte growth facto 41.4 45 0.0015 25.6 5.0 38 130-171 60-97 (98)
28 1t2k_D Cyclic-AMP-dependent tr 38.6 85 0.0029 20.8 7.3 50 117-167 5-56 (61)
29 2dgc_A Protein (GCN4); basic d 38.4 40 0.0014 23.1 4.0 20 129-148 27-46 (63)
30 4dnd_A Syntaxin-10, SYN10; str 38.4 1.2E+02 0.0042 23.2 7.3 38 110-147 78-127 (130)
31 1jad_A PLC-beta, phospholipase 38.3 59 0.002 28.2 6.0 42 125-166 163-208 (251)
32 3oja_B Anopheles plasmodium-re 34.9 2.4E+02 0.0081 24.9 15.0 23 161-183 544-566 (597)
33 3vkg_A Dynein heavy chain, cyt 32.8 2.3E+02 0.0077 32.5 10.6 42 152-193 2044-2101(3245)
34 2cly_A ATP synthase B chain, m 32.7 1.7E+02 0.0059 24.5 7.8 64 116-186 102-181 (214)
35 2wt7_A Proto-oncogene protein 31.8 1.2E+02 0.004 20.4 7.3 52 115-167 4-57 (63)
36 2o71_A Death domain-containing 31.2 74 0.0025 23.8 4.8 40 152-198 52-97 (115)
37 3s9g_A Protein hexim1; cyclin 31.2 1.1E+02 0.0037 23.7 5.7 50 87-148 32-81 (104)
38 2of5_A Death domain-containing 30.9 68 0.0023 24.0 4.6 40 152-198 52-97 (114)
39 2khk_A ATP synthase subunit B; 30.5 65 0.0022 20.2 3.8 19 152-170 25-43 (53)
40 3s4r_A Vimentin; alpha-helix, 30.3 1.5E+02 0.005 21.6 6.2 31 137-170 35-65 (93)
41 3v6i_B V-type ATP synthase, su 28.3 2.1E+02 0.0071 22.2 9.2 70 83-163 4-77 (105)
42 2ovc_A Potassium voltage-gated 27.8 27 0.00092 22.0 1.5 13 112-124 9-21 (33)
43 2jee_A YIIU; FTSZ, septum, coi 27.5 1.8E+02 0.0063 21.3 9.2 23 174-196 57-79 (81)
44 4dbg_B Ring finger protein 31; 27.3 59 0.002 26.8 3.9 35 98-140 78-112 (162)
45 3na7_A HP0958; flagellar bioge 27.1 2.6E+02 0.0088 22.9 13.8 53 104-156 65-121 (256)
46 3mtu_A Tropomyosin alpha-1 cha 26.7 57 0.002 23.0 3.3 25 133-157 3-27 (75)
47 1e52_A Excinuclease ABC subuni 25.4 31 0.0011 24.0 1.6 11 158-168 47-57 (63)
48 4i0x_B ESAT-6-like protein MAB 25.3 1.8E+02 0.006 20.3 8.9 57 140-196 22-80 (103)
49 1fpo_A HSC20, chaperone protei 25.3 2.4E+02 0.0084 22.0 7.2 49 91-139 48-107 (171)
50 2efk_A CDC42-interacting prote 24.9 2.6E+02 0.009 22.2 14.1 83 86-168 96-197 (301)
51 3fb2_A Spectrin alpha chain, b 24.8 2.3E+02 0.008 21.6 12.3 100 83-192 11-119 (218)
52 2vs0_A Virulence factor ESXA; 24.2 1.6E+02 0.0054 19.5 7.9 62 135-196 12-73 (97)
53 1fad_A Protein (FADD protein); 24.1 98 0.0034 21.7 4.2 39 152-197 42-86 (99)
54 1hjb_A Ccaat/enhancer binding 24.0 1.5E+02 0.005 21.7 5.2 50 107-156 10-60 (87)
55 4fye_A SIDF, inhibitor of grow 23.5 1.8E+02 0.0063 27.7 6.9 67 107-173 514-593 (761)
56 1gu4_A CAAT/enhancer binding p 23.2 1.6E+02 0.0055 21.1 5.2 50 107-156 10-60 (78)
57 1wt6_A Myotonin-protein kinase 22.8 2.3E+02 0.008 20.9 7.5 60 114-179 9-70 (81)
58 1utg_A Uteroglobin; steroid bi 22.1 90 0.0031 21.5 3.6 53 144-196 6-64 (70)
59 3zbh_A ESXA; unknown function, 22.1 1.8E+02 0.0061 19.3 8.8 57 140-196 20-76 (99)
60 3nr7_A DNA-binding protein H-N 21.6 1.2E+02 0.004 22.2 4.3 31 167-197 43-73 (86)
61 3a1g_B Polymerase basic protei 21.1 62 0.0021 21.3 2.3 21 150-175 2-22 (40)
62 3lvh_D LCB, clathrin light cha 21.0 2E+02 0.0067 24.5 6.0 29 140-168 101-129 (205)
63 4h3z_A TRNA (guanine-N(1)-)-me 20.7 96 0.0033 27.4 4.2 50 106-160 225-274 (276)
No 1
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.19 E-value=2.2 Score=37.34 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=35.2
Q ss_pred HHHHHhhHHHHhhhhhhhhhhhHHHHHHHh----------HHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHh
Q 028954 95 RELKEGHRAWAAHKKEAAWRLRRVELQLES----------EKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIA 164 (201)
Q Consensus 95 rELEEG~raw~aHKKEAaWRL~RvElQLES----------EKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla 164 (201)
++||++.-.......|..=++....+|+|. +--.++..++|++.+++...|+. +.+....++++..
T Consensus 370 ~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 445 (487)
T 3oja_A 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN----AIRDWDMYQHKET 445 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhc----chhhhhhhhhHHH
Confidence 466665555555555555555555555553 11334455555555554444433 4444445555555
Q ss_pred hhhh
Q 028954 165 GLRK 168 (201)
Q Consensus 165 ~LrR 168 (201)
.|++
T Consensus 446 ~~~~ 449 (487)
T 3oja_A 446 QLAE 449 (487)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 2
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.64 E-value=1.7 Score=38.02 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028954 175 QKLAEQWSAKHLRLTKFLEQM 195 (201)
Q Consensus 175 qKlaEqW~~Kh~rL~kfleq~ 195 (201)
|...+++..+..|+.|.++.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhh
Confidence 344455556666666666554
No 3
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.48 E-value=3.2 Score=34.28 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHH--HHHHHHHHhhhHHHhhhhh---hHHHHH
Q 028954 85 LLVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKM--EEIEAKVKALGDEQRATLD---RIEAEY 159 (201)
Q Consensus 85 ~~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKm--EEiEaKikaLreEq~a~l~---riE~eY 159 (201)
..++.+-.-|+||.+--...-.||..--=.+-.|--||+.||..|.+..- -|.+.+|.+|.+|=...-. +++.|-
T Consensus 41 k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~ 120 (168)
T 3o0z_A 41 KSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGER 120 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999988877543 6889999999988655444 444443
Q ss_pred H---HHHhhhhhhHHHHH
Q 028954 160 R---EQIAGLRKDAEAKE 174 (201)
Q Consensus 160 r---Eqla~LrRDAE~KE 174 (201)
| |.|+.|.+....-|
T Consensus 121 r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 121 KEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 3 56666666655555
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.58 E-value=8.1 Score=34.27 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 028954 151 TLDRIEAEYREQIAGLRKDAEAKEQKL 177 (201)
Q Consensus 151 ~l~riE~eYrEqla~LrRDAE~KEqKl 177 (201)
.|++.-.+-++++..|++|.+...+|+
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444433
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=77.80 E-value=3 Score=34.13 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=17.7
Q ss_pred HHHHhHHHhhHHHHHHHHHHHHHhhhHHHh
Q 028954 120 LQLESEKACQRRDKMEEIEAKVKALGDEQR 149 (201)
Q Consensus 120 lQLESEKa~rRREKmEEiEaKikaLreEq~ 149 (201)
++|-.|...+-|+=++++-.+++.||++-.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~ 95 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLI 95 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666665533
No 6
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.66 E-value=7.1 Score=28.63 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhHHHhhhhhhHH
Q 028954 134 MEEIEAKVKALGDEQRATLDRIE 156 (201)
Q Consensus 134 mEEiEaKikaLreEq~a~l~riE 156 (201)
|+-|--||.+|+-|--.+++|.|
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae 26 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAE 26 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 7
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.72 E-value=7.7 Score=28.70 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhHHHhhhhhhHH
Q 028954 134 MEEIEAKVKALGDEQRATLDRIE 156 (201)
Q Consensus 134 mEEiEaKikaLreEq~a~l~riE 156 (201)
|+-|--||.+|+-|--.+++|.|
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae 26 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAE 26 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554
No 8
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=72.19 E-value=17 Score=28.22 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHh
Q 028954 131 RDKMEEIEAKVKALGDEQRATLDRIEAEYREQIA 164 (201)
Q Consensus 131 REKmEEiEaKikaLreEq~a~l~riE~eYrEqla 164 (201)
+.++++.|++.+.+=.|--+....++++||++++
T Consensus 30 ~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~ 63 (105)
T 3v6i_B 30 EERVKRAEAEAKALLEEAEAKAKALEAQYRERER 63 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777766666666666777777777664
No 9
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=65.03 E-value=8.2 Score=30.27 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=35.8
Q ss_pred hhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 028954 144 LGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKH 185 (201)
Q Consensus 144 LreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh 185 (201)
|=.+|.+.|+.||.+|..+...|+.+-.+--.+|++.-.++|
T Consensus 21 Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~~ 62 (118)
T 2y39_A 21 LDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNP 62 (118)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 557899999999999999999999999999999998866443
No 10
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=62.32 E-value=51 Score=25.31 Aligned_cols=72 Identities=35% Similarity=0.444 Sum_probs=35.1
Q ss_pred hhhhHHHHHHHhHHHhh-----HHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHH-----------------hhhhhhH
Q 028954 113 WRLRRVELQLESEKACQ-----RRDKMEEIEAKVKALGDEQRATLDRIEAEYREQI-----------------AGLRKDA 170 (201)
Q Consensus 113 WRL~RvElQLESEKa~r-----RREKmEEiEaKikaLreEq~a~l~riE~eYrEql-----------------a~LrRDA 170 (201)
-+|..+|+-||+||-.+ +....+..=+.|+.=-++-...+.-|++-|-+-| +.--.|-
T Consensus 4 n~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDk 83 (101)
T 1d7m_A 4 NRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDR 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHH
Confidence 35666667677766543 2222333333333333333344444444444444 4444555
Q ss_pred HHHHHHHHHHHHHH
Q 028954 171 EAKEQKLAEQWSAK 184 (201)
Q Consensus 171 E~KEqKlaEqW~~K 184 (201)
---|-||||.-..|
T Consensus 84 AiLELkLaE~~Dek 97 (101)
T 1d7m_A 84 AILELKLAEAIDEK 97 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh
Confidence 55566666654444
No 11
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=62.31 E-value=37 Score=23.65 Aligned_cols=64 Identities=9% Similarity=0.128 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028954 133 KMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 133 KmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g 196 (201)
.|...-.+++..-++=...|+.|++.-..-.++..-+|-..=+-..++|...-.+|...|+.|+
T Consensus 4 el~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~ 67 (94)
T 4i0x_A 4 EVGALSKFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALTDIA 67 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666777777777777888899999999999999999999999999875
No 12
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=59.27 E-value=10 Score=24.67 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhHH
Q 028954 133 KMEEIEAKVKALGDEQRATLDRIE 156 (201)
Q Consensus 133 KmEEiEaKikaLreEq~a~l~riE 156 (201)
.||-|--||.+|+-|.-.+++|.|
T Consensus 4 ~MdAIKKKMq~lK~ekd~A~drAe 27 (40)
T 2z5i_I 4 SMDAIKKKMQMLKLDKENALDRAE 27 (40)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHH
Confidence 488899999999999999999987
No 13
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=57.52 E-value=22 Score=28.89 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Q 028954 129 QRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAE-----AKEQKLAEQWSAKHLRLTKFLEQM 195 (201)
Q Consensus 129 rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE-----~KEqKlaEqW~~Kh~rL~kfleq~ 195 (201)
+|+..+.++.+.+..| |+++|..+|+.+.++.+ ....++.+.+..+-..|..++.++
T Consensus 33 ~r~~~~~~l~~~~~~l----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 94 (179)
T 2f42_A 33 KRISQENELHAYLSKL----------ILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMDELFSQV 94 (179)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHTTC------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666665 45777777777765422 334456666666666666666654
No 14
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.39 E-value=22 Score=28.23 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=34.1
Q ss_pred HHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHH
Q 028954 118 VELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQ 175 (201)
Q Consensus 118 vElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEq 175 (201)
|---|+-||+.. ..+++|++.+|+.|-..=..+... +..|||+-+.--.
T Consensus 58 L~~SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae--------~erlr~~~~~~~~ 106 (121)
T 3mq7_A 58 LMASLDAEKAQG-QKKVEELEGEITTLNHKLQDASAE--------VERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhchhhhh
Confidence 445688999988 678999999999997754443333 3467777664333
No 15
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=54.11 E-value=83 Score=25.16 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHH
Q 028954 86 LVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQL 122 (201)
Q Consensus 86 ~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQL 122 (201)
++..|-.++++++..+..+..+-..+.-.+......|
T Consensus 103 v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l 139 (305)
T 2efl_A 103 IIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQL 139 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777766666665555555555544444
No 16
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=52.80 E-value=6.8 Score=23.57 Aligned_cols=19 Identities=47% Similarity=0.788 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhhhHHHHHH
Q 028954 156 EAEYREQIAGLRKDAEAKEQ 175 (201)
Q Consensus 156 E~eYrEqla~LrRDAE~KEq 175 (201)
|.||.|-|..|| +||.|..
T Consensus 2 eeeyqemlenlr-eaevkkn 20 (26)
T 2dpr_A 2 EEEYQEMLENLR-EAEVKKN 20 (26)
T ss_dssp CHHHHHHHHHHH-HHHHHHH
T ss_pred cHHHHHHHHHHH-HHHHHhc
Confidence 468999999996 6777643
No 17
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=50.10 E-value=48 Score=26.17 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=34.1
Q ss_pred hhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhH-------------HHHHHHHHhhh
Q 028954 110 EAAWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRI-------------EAEYREQIAGL 166 (201)
Q Consensus 110 EAaWRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~ri-------------E~eYrEqla~L 166 (201)
|++=+|.-||..|| |--++.+.+|+||+.|-++=...-+.| |..|.+++..|
T Consensus 77 E~~RKl~~~E~dLe-----raeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 77 EVARKLVIIESDLE-----RAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 55556666666555 556778888999998887754433322 56677777655
No 18
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=49.83 E-value=45 Score=26.57 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHH
Q 028954 134 MEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKH-LRL 188 (201)
Q Consensus 134 mEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh-~rL 188 (201)
|-++..++..+-.+-+..+++|...|..++..|.-+.+.-+..| .+||.-| ..|
T Consensus 25 ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l-~~y~e~~r~el 79 (171)
T 2p2u_A 25 IATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGV-ATFATLNKTEM 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHh
Confidence 33444444444455577889999999999999999988887665 4688777 555
No 19
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=49.39 E-value=56 Score=21.79 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=24.7
Q ss_pred hhHHHHHHHhHHHhhHHHH--HHHHHHHHHhhhHHHhhhh
Q 028954 115 LRRVELQLESEKACQRRDK--MEEIEAKVKALGDEQRATL 152 (201)
Q Consensus 115 L~RvElQLESEKa~rRREK--mEEiEaKikaLreEq~a~l 152 (201)
.+|+..-=||=..+|.|-| ++++|.++..|..|-....
T Consensus 3 ~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 3 EVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666665544 7999999998877654433
No 20
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=49.28 E-value=53 Score=22.66 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=39.5
Q ss_pred HHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028954 140 KVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 140 KikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g 196 (201)
+|+....+=...|+.|+..-....+...-+|-..=+....+|..+-.+|...|++|+
T Consensus 18 ~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~ 74 (101)
T 3fav_A 18 NFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEIS 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555444445677778888888888999999999999999875
No 21
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=48.78 E-value=6.9 Score=24.63 Aligned_cols=11 Identities=45% Similarity=0.495 Sum_probs=9.0
Q ss_pred hhhhHHHHHHH
Q 028954 113 WRLRRVELQLE 123 (201)
Q Consensus 113 WRL~RvElQLE 123 (201)
-||.|||+|+-
T Consensus 10 aRLnRvE~k~t 20 (31)
T 3hfe_A 10 ARLNRVEDKVT 20 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 48999998874
No 22
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.28 E-value=36 Score=22.81 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhh
Q 028954 129 QRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLR 167 (201)
Q Consensus 129 rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~Lr 167 (201)
|+.+.++++|.++..|..+-..--..| ...++++..|+
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v-~~L~~e~~~Lk 56 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTA-NMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 345667889999998876654444444 35566666654
No 23
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=44.65 E-value=90 Score=22.85 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhH------HHHHHHHHhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 028954 133 KMEEIEAKVKALGDEQRATLDRI------EAEYREQIAGLRKDAEAKEQKLAEQWS---AKHLRLTKFLEQM 195 (201)
Q Consensus 133 KmEEiEaKikaLreEq~a~l~ri------E~eYrEqla~LrRDAE~KEqKlaEqW~---~Kh~rL~kfleq~ 195 (201)
-++.++++++.|..|+...+..| ++....+|..++..++..++.=..-|. .-+..+..|.+.+
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~ 76 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDEL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888887765544 346777888888888877766666665 4455566665543
No 24
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=43.70 E-value=42 Score=23.53 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=9.9
Q ss_pred HHHHHHHhhhHHHhhhhhhHH
Q 028954 136 EIEAKVKALGDEQRATLDRIE 156 (201)
Q Consensus 136 EiEaKikaLreEq~a~l~riE 156 (201)
-|--||.+|+-|--.+.+|.+
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~ 23 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAE 23 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444444443
No 25
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.86 E-value=2.3e+02 Score=32.41 Aligned_cols=45 Identities=13% Similarity=0.303 Sum_probs=22.9
Q ss_pred HHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 028954 96 ELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAKVK 142 (201)
Q Consensus 96 ELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaKik 142 (201)
||++-.....+-.+||.=-|..++. +++.|.++++.++++|+++.
T Consensus 1942 ~L~~~~~~L~~k~~ea~~~l~~i~~--~~~~ae~~k~~v~~~~~~~~ 1986 (3245)
T 3vkg_A 1942 SLAQKNRELDVKNEQANQKLKQMVQ--DQQAAEIKQKDARELQVQLD 1986 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4444444444545555545555543 34456666665555555543
No 26
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=42.44 E-value=1.3e+02 Score=26.10 Aligned_cols=47 Identities=28% Similarity=0.426 Sum_probs=22.7
Q ss_pred HHHhhHHHHhhhhhh-hhhhhHHHHH--HHhHHHhhHHHHHHHHHHHHHhh
Q 028954 97 LKEGHRAWAAHKKEA-AWRLRRVELQ--LESEKACQRRDKMEEIEAKVKAL 144 (201)
Q Consensus 97 LEEG~raw~aHKKEA-aWRL~RvElQ--LESEKa~rRREKmEEiEaKikaL 144 (201)
|.|.+.+..+-+|-| +=.+.-|-|| ||.+++... .|++|.|+.|+.|
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 455 (471)
T 3mq9_A 406 LTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ-KKVEELEGEITTL 455 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 334444444333333 2333333333 566666533 3667777766654
No 27
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=41.40 E-value=45 Score=25.57 Aligned_cols=38 Identities=34% Similarity=0.536 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHH
Q 028954 130 RRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAE 171 (201)
Q Consensus 130 RREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE 171 (201)
+|..-|.+.-|+--+||. .++||.+-.|||++| ||.||
T Consensus 60 ~R~~yE~LQDkL~qi~eA-R~ALdaLR~eH~~Kl---rr~ae 97 (98)
T 3f1i_H 60 RRLYYEGLQDKLAQIRDA-RGALSALREEHREKL---RRAAE 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHC
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHhc
Confidence 567778888888888765 677888888888764 66654
No 28
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.62 E-value=85 Score=20.81 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHHhHHHhh--HHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhh
Q 028954 117 RVELQLESEKACQ--RRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLR 167 (201)
Q Consensus 117 RvElQLESEKa~r--RREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~Lr 167 (201)
|+|--=++=.-|| +++.++++|.++..|-.+-..--..| ...++++..|+
T Consensus 5 r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i-~~L~~e~~~Lk 56 (61)
T 1t2k_D 5 FLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEV-TLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3333333333444 45567889999998876554444444 35666666654
No 29
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.42 E-value=40 Score=23.09 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHhhhHHH
Q 028954 129 QRRDKMEEIEAKVKALGDEQ 148 (201)
Q Consensus 129 rRREKmEEiEaKikaLreEq 148 (201)
|+.+.++++|.++..|..+-
T Consensus 27 RK~~~~~~Le~~v~~L~~eN 46 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKN 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999986543
No 30
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=38.42 E-value=1.2e+02 Score=23.25 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=22.6
Q ss_pred hhhhhhhHHHHHHH------------hHHHhhHHHHHHHHHHHHHhhhHH
Q 028954 110 EAAWRLRRVELQLE------------SEKACQRRDKMEEIEAKVKALGDE 147 (201)
Q Consensus 110 EAaWRL~RvElQLE------------SEKa~rRREKmEEiEaKikaLreE 147 (201)
++.|.|.-|+.-.. ..-..+||.=+.+++.+|+.++.+
T Consensus 78 sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 78 SIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666664433 112456666777777777776653
No 31
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=38.31 E-value=59 Score=28.20 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=20.2
Q ss_pred HHHhhHHHHH----HHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhh
Q 028954 125 EKACQRRDKM----EEIEAKVKALGDEQRATLDRIEAEYREQIAGL 166 (201)
Q Consensus 125 EKa~rRREKm----EEiEaKikaLreEq~a~l~riE~eYrEqla~L 166 (201)
|+.++.||.- .+|=.-||.|.+-|.--.+++..-+.|+|..|
T Consensus 163 e~Er~~rEin~s~ike~veerkrl~~kQ~k~qEkL~~~h~e~le~l 208 (251)
T 1jad_A 163 AQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAI 208 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555542 33444455555544444555555555555444
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.91 E-value=2.4e+02 Score=24.87 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=13.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHH
Q 028954 161 EQIAGLRKDAEAKEQKLAEQWSA 183 (201)
Q Consensus 161 Eqla~LrRDAE~KEqKlaEqW~~ 183 (201)
+++..|++.-+.+.+++.|....
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHH
Confidence 55666666666666666554433
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.80 E-value=2.3e+02 Score=32.50 Aligned_cols=42 Identities=10% Similarity=0.328 Sum_probs=22.6
Q ss_pred hhhHHHHHHHH---HhhhhhhHHHHHHHHH-------------HHHHHHHHHHHHHHH
Q 028954 152 LDRIEAEYREQ---IAGLRKDAEAKEQKLA-------------EQWSAKHLRLTKFLE 193 (201)
Q Consensus 152 l~riE~eYrEq---la~LrRDAE~KEqKla-------------EqW~~Kh~rL~kfle 193 (201)
|..+.++|.+. -..|..+++.=++||. +.|...-..|..-++
T Consensus 2044 l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2044 IATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 33444455443 2456677777777654 346665555544333
No 34
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=32.74 E-value=1.7e+02 Score=24.50 Aligned_cols=64 Identities=20% Similarity=0.388 Sum_probs=35.4
Q ss_pred hHHHHHHHhHHHhhHHH-HHHH-HHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHH--------------HHHHHHHH
Q 028954 116 RRVELQLESEKACQRRD-KMEE-IEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAE--------------AKEQKLAE 179 (201)
Q Consensus 116 ~RvElQLESEKa~rRRE-KmEE-iEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE--------------~KEqKlaE 179 (201)
.-|+..+|++|...-|- ..+. +++| | |+++| ..|+.||||+..+...+. ..||+-.=
T Consensus 102 ~~lk~~Ie~~k~~q~~~~~~~~Lf~~~----k--En~al-~lEa~yre~~~~v~~EvK~rLDy~v~~e~~~r~~eQ~~mv 174 (214)
T 2cly_A 102 KQIQDAIDMEKSQQALVQKRHYLFDVQ----R--NNIAM-ALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMI 174 (214)
T ss_dssp HHHHHHHHHHHHHHHHTGGGHHHHHHH----H--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----H--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666555321 1111 1222 2 33444 479999999988876553 34566666
Q ss_pred HHHHHHH
Q 028954 180 QWSAKHL 186 (201)
Q Consensus 180 qW~~Kh~ 186 (201)
.|-.+|.
T Consensus 175 ~wV~~~V 181 (214)
T 2cly_A 175 NWVEKRV 181 (214)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 35
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.77 E-value=1.2e+02 Score=20.39 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=30.7
Q ss_pred hhHHHHHHHhHHHhhH--HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhh
Q 028954 115 LRRVELQLESEKACQR--RDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLR 167 (201)
Q Consensus 115 L~RvElQLESEKa~rR--REKmEEiEaKikaLreEq~a~l~riE~eYrEqla~Lr 167 (201)
.+|.|--=++=.-||. .+.+++++.++..|-.+-..--..|+ .+++++..|+
T Consensus 4 ~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~-~L~~e~~~Lk 57 (63)
T 2wt7_A 4 RIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIA-NLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3444444444444544 45578889998888776555555554 3666665554
No 36
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=31.25 E-value=74 Score=23.85 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHhccC
Q 028954 152 LDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKH------LRLTKFLEQMGCR 198 (201)
Q Consensus 152 l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh------~rL~kfleq~g~~ 198 (201)
+++|+.+|. +|-...=..|-..|..++ .+|.+.|..+|..
T Consensus 52 Id~I~~~~p-------~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~ 97 (115)
T 2o71_A 52 IYRCKANHP-------HNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVD 97 (115)
T ss_dssp HHHHHHHCT-------TCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHCC-------CCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCC
Confidence 567777774 344444445567787766 6788888887753
No 37
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=31.21 E-value=1.1e+02 Score=23.72 Aligned_cols=50 Identities=24% Similarity=0.293 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHH
Q 028954 87 VSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQ 148 (201)
Q Consensus 87 ~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq 148 (201)
=.+||+-|-+||.-.-..- +-+=||+.+ |-..+ -++.|.+++|.-||.|-
T Consensus 32 KqELIqEYl~LE~~~s~le----~e~~rlr~~-----~~~~~---~~v~eLe~everL~~EN 81 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRME----DENNRLRLE-----SKRLD---ARVRELELELDRLRAEN 81 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHH-----HHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHH-----hccch---hhHHHHHHHHHHHHHHH
Confidence 3589999999986432210 011122222 11111 25777777777777654
No 38
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=30.87 E-value=68 Score=24.01 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHhccC
Q 028954 152 LDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKH------LRLTKFLEQMGCR 198 (201)
Q Consensus 152 l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh------~rL~kfleq~g~~ 198 (201)
+++|+.+|. +|-...=..|-..|..++ .+|.+.|..+|..
T Consensus 52 Id~I~~~~p-------~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~ 97 (114)
T 2of5_A 52 IYRCKANHP-------HNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVD 97 (114)
T ss_dssp HHHHHHHCS-------SCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHCC-------CCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCC
Confidence 567777774 344434445567787766 6788888887754
No 39
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}
Probab=30.52 E-value=65 Score=20.18 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHhhhhhhH
Q 028954 152 LDRIEAEYREQIAGLRKDA 170 (201)
Q Consensus 152 l~riE~eYrEqla~LrRDA 170 (201)
...+.++|.++|..-|..|
T Consensus 25 a~~~~~~~e~~l~~Ar~ea 43 (53)
T 2khk_A 25 LDLAKASATDQLKKAKAEA 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567789999998887765
No 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.30 E-value=1.5e+02 Score=21.59 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=17.3
Q ss_pred HHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhH
Q 028954 137 IEAKVKALGDEQRATLDRIEAEYREQIAGLRKDA 170 (201)
Q Consensus 137 iEaKikaLreEq~a~l~riE~eYrEqla~LrRDA 170 (201)
.|+||+.+++.. -.+|..-|...+..||+-.
T Consensus 35 Le~~i~~l~~~~---~~~~~~~ye~~i~~Lr~~i 65 (93)
T 3s4r_A 35 LLAELEQLKGQG---KSRLGDLYEEEMRELRRQV 65 (93)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc---CCCcHHHHHHHHHHHHHHH
Confidence 344555555432 2456666777777777643
No 41
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=28.31 E-value=2.1e+02 Score=22.15 Aligned_cols=70 Identities=40% Similarity=0.469 Sum_probs=43.9
Q ss_pred chhhHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHH----HhhhhhhHHHH
Q 028954 83 ENLLVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDE----QRATLDRIEAE 158 (201)
Q Consensus 83 ~~~~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaKikaLreE----q~a~l~riE~e 158 (201)
+..++++|.+-=++|-.- .-+-|++|.=.+++-| .|- +--++|.|++.++|-.+ ...-..||+.+
T Consensus 4 g~gllk~LAerE~~L~~~---lE~Ar~eA~~~v~~AE----AeA----~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~e 72 (105)
T 3v6i_B 4 GLGLIKSLAEKEKQLLER---LEAAKKEAEERVKRAE----AEA----KALLEEAEAKAKALEAQYRERERAETEALLAR 72 (105)
T ss_dssp -CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888766665421 2234677776665554 222 23467888888888544 44556789999
Q ss_pred HHHHH
Q 028954 159 YREQI 163 (201)
Q Consensus 159 YrEql 163 (201)
||.|-
T Consensus 73 ara~A 77 (105)
T 3v6i_B 73 YRERA 77 (105)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98763
No 42
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=27.84 E-value=27 Score=21.96 Aligned_cols=13 Identities=38% Similarity=0.406 Sum_probs=10.2
Q ss_pred hhhhhHHHHHHHh
Q 028954 112 AWRLRRVELQLES 124 (201)
Q Consensus 112 aWRL~RvElQLES 124 (201)
.-||-|||.|+.+
T Consensus 9 ~~Rl~kVE~qv~~ 21 (33)
T 2ovc_A 9 MGRVVKVEKQVQS 21 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4589999988654
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.52 E-value=1.8e+02 Score=21.28 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 028954 174 EQKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 174 EqKlaEqW~~Kh~rL~kfleq~g 196 (201)
-++|-+.=.+...||..+|.+|-
T Consensus 57 n~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 57 NNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 35677777788889999888763
No 44
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=27.33 E-value=59 Score=26.79 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=26.7
Q ss_pred HHhhHHHHhhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHH
Q 028954 98 KEGHRAWAAHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAK 140 (201)
Q Consensus 98 EEG~raw~aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaK 140 (201)
+|+++||..|+.+. |+. |. +=.++||.|++|+-++
T Consensus 78 ~EAr~Aw~~~~Gd~-~~A--v~-----~ci~~R~~K~~eL~s~ 112 (162)
T 4dbg_B 78 QEARRAWLDRHGNL-DEA--VE-----ECVRTRRRKVQELQSL 112 (162)
T ss_dssp HHHHHHHHHTTTCH-HHH--HH-----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCh-HHH--HH-----HHHHHHHHHHHHHHhc
Confidence 89999999999864 443 22 3456889999998776
No 45
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.07 E-value=2.6e+02 Score=22.87 Aligned_cols=53 Identities=6% Similarity=0.073 Sum_probs=27.6
Q ss_pred HHhhhhhhhhhhhHHHHHHHhHHHhhHHHH----HHHHHHHHHhhhHHHhhhhhhHH
Q 028954 104 WAAHKKEAAWRLRRVELQLESEKACQRRDK----MEEIEAKVKALGDEQRATLDRIE 156 (201)
Q Consensus 104 w~aHKKEAaWRL~RvElQLESEKa~rRREK----mEEiEaKikaLreEq~a~l~riE 156 (201)
--.+=.++.=|+++.+.||.+-+..|--+. ++-.+.+|..|.++....+++||
T Consensus 65 ~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 65 NEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566666666655544443322 23344555566666666666665
No 46
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=26.70 E-value=57 Score=23.01 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhHHH
Q 028954 133 KMEEIEAKVKALGDEQRATLDRIEA 157 (201)
Q Consensus 133 KmEEiEaKikaLreEq~a~l~riE~ 157 (201)
-|+.|..||.+|..|--.++++++.
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~ 27 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQ 27 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999988888877763
No 47
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=25.39 E-value=31 Score=24.02 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=7.7
Q ss_pred HHHHHHhhhhh
Q 028954 158 EYREQIAGLRK 168 (201)
Q Consensus 158 eYrEqla~LrR 168 (201)
.||+|+..|++
T Consensus 47 ~lRD~I~~L~~ 57 (63)
T 1e52_A 47 QIRDQLHQLRE 57 (63)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57777777765
No 48
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=25.30 E-value=1.8e+02 Score=20.33 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=40.0
Q ss_pred HHHhhhHHHhhhhhhHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028954 140 KVKALGDEQRATLDRIEAEYREQIAG--LRKDAEAKEQKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 140 KikaLreEq~a~l~riE~eYrEqla~--LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g 196 (201)
.|+.-..+=...|+.|++.-....+. ..-+|-..=+-...+|...-.+|...|++|+
T Consensus 22 ~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~ 80 (103)
T 4i0x_B 22 RARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQME 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344566666666666677 7777877778888899999999998888875
No 49
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=25.27 E-value=2.4e+02 Score=21.98 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHhH--------H---HhhHHHHHHHHHH
Q 028954 91 MECCRELKEGHRAWAAHKKEAAWRLRRVELQLESE--------K---ACQRRDKMEEIEA 139 (201)
Q Consensus 91 vecCrELEEG~raw~aHKKEAaWRL~RvElQLESE--------K---a~rRREKmEEiEa 139 (201)
.+.++.+-++++....-.+=+...+..--..+..| . .--.||++|+++.
T Consensus 48 ~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~lee~~~ 107 (171)
T 1fpo_A 48 VQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQ 107 (171)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTTCSSSCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHhcCCCccccccccCCHHHHHHHHHHHHHHHHhhc
Confidence 46788899999998887777777764321111222 1 2346777887764
No 50
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=24.89 E-value=2.6e+02 Score=22.25 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHHHHh-----HHHhhH----HHHHHHHH----------HHHHhhhH
Q 028954 86 LVSELMECCRELKEGHRAWAAHKKEAAWRLRRVELQLES-----EKACQR----RDKMEEIE----------AKVKALGD 146 (201)
Q Consensus 86 ~~~eLvecCrELEEG~raw~aHKKEAaWRL~RvElQLES-----EKa~rR----REKmEEiE----------aKikaLre 146 (201)
++..|-.+.++.+..+..+..+-..+.-.+..+...|+- ++.|+. |.+.+..+ .|+++--+
T Consensus 96 v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~ 175 (301)
T 2efk_A 96 VCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAH 175 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHH
Confidence 455666777788888877777777777777666655542 222222 22222221 12233233
Q ss_pred HHhhhhhhHHHHHHHHHhhhhh
Q 028954 147 EQRATLDRIEAEYREQIAGLRK 168 (201)
Q Consensus 147 Eq~a~l~riE~eYrEqla~LrR 168 (201)
.-...++.-+.+|+.+|..+-+
T Consensus 176 ~~~~~~~~a~~~Y~~~v~~~n~ 197 (301)
T 2efk_A 176 LRSHMAEESKNEYAAQLQRFNR 197 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667888887776643
No 51
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=24.75 E-value=2.3e+02 Score=21.60 Aligned_cols=100 Identities=16% Similarity=0.290 Sum_probs=55.7
Q ss_pred chhhHHHHHHHHHHHHHhhHHHHhhhhhh------hhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhH-
Q 028954 83 ENLLVSELMECCRELKEGHRAWAAHKKEA------AWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRI- 155 (201)
Q Consensus 83 ~~~~~~eLvecCrELEEG~raw~aHKKEA------aWRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~ri- 155 (201)
++........-|++|. +|+..+... .=.+..||.+|+.=+. .+.+|+.-+..+..+.......+...
T Consensus 11 ~~~~~~~F~~~~~~l~----~Wl~~~~~~l~~~e~~~d~~~ve~ll~~H~~--l~~ei~~~~~~~~~~~~~G~~Ll~~~~ 84 (218)
T 3fb2_A 11 DSHDLQRFLSDFRDLM----SWINGIRGLVSSDELAKDVTGAEALLERHQE--HRTEIDARAGTFQAFEQFGQQLLAHGH 84 (218)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHTCCCCCSSSHHHHHHHHHHHH--HHHHHHTTHHHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHhCCC
Confidence 4444555566666654 677766543 2356778877764222 12223322245666655554444332
Q ss_pred --HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028954 156 --EAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFL 192 (201)
Q Consensus 156 --E~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfl 192 (201)
-.+.+++|..|+ .+.+.|-+.|..+..+|-..+
T Consensus 85 ~~~~~i~~~l~~L~----~~w~~L~~~~~~R~~~L~q~l 119 (218)
T 3fb2_A 85 YASPEIKQKLDILD----QERADLEKAWVQRRMMLDQCL 119 (218)
T ss_dssp TTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 245666676664 456677777877777776544
No 52
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=24.22 E-value=1.6e+02 Score=19.45 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028954 135 EEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 135 EEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g 196 (201)
+..-..|+....+=...++.|++.-....+...-+|-..=+..-.+|...-.++...|+.|+
T Consensus 12 ~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~ 73 (97)
T 2vs0_A 12 RAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIK 73 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555555666666665555666688888888888887764
No 53
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=24.05 E-value=98 Score=21.66 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHhcc
Q 028954 152 LDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKH------LRLTKFLEQMGC 197 (201)
Q Consensus 152 l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh------~rL~kfleq~g~ 197 (201)
++.|+.+|. +|-..+=..|-..|..++ ..|.+.|..+|.
T Consensus 42 I~~I~~~~~-------~d~~eq~~~mL~~W~~~~g~~At~~~L~~AL~~~~~ 86 (99)
T 1fad_A 42 MDGIEEKYP-------RSLSERVRESLKVWKNAEKKNASVAGLVKALRTCRL 86 (99)
T ss_dssp HHHHHHHCS-------SCHHHHHHHHHHHHHHHHGGGGSHHHHHHHHHHHTC
T ss_pred HHHHHHHCC-------CCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHCCc
Confidence 455665553 444444456667787665 456666666653
No 54
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.97 E-value=1.5e+02 Score=21.74 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=27.5
Q ss_pred hhhhhhhhhhHHHHHHHhHHHh-hHHHHHHHHHHHHHhhhHHHhhhhhhHH
Q 028954 107 HKKEAAWRLRRVELQLESEKAC-QRRDKMEEIEAKVKALGDEQRATLDRIE 156 (201)
Q Consensus 107 HKKEAaWRL~RvElQLESEKa~-rRREKmEEiEaKikaLreEq~a~l~riE 156 (201)
.|+...++.+|----..+=|.+ ++|.+..+++.++..|..|-..--.+|+
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666655444443333 3556667777777777665444333343
No 55
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=23.54 E-value=1.8e+02 Score=27.68 Aligned_cols=67 Identities=27% Similarity=0.518 Sum_probs=45.7
Q ss_pred hhhhhhhh---hhHHHHHHH-hHHHhhHHHH-HHHHHHHHHhhhH----HHhhhhhhHHHHHHHHHhhhh----hhHHHH
Q 028954 107 HKKEAAWR---LRRVELQLE-SEKACQRRDK-MEEIEAKVKALGD----EQRATLDRIEAEYREQIAGLR----KDAEAK 173 (201)
Q Consensus 107 HKKEAaWR---L~RvElQLE-SEKa~rRREK-mEEiEaKikaLre----Eq~a~l~riE~eYrEqla~Lr----RDAE~K 173 (201)
.|.|..|. |..|.-|.. -||.-++.|- +=|+-..|.|||. |.+..+.+-=.|.+||++-.- -|-|.|
T Consensus 514 qkgegkwdqakldqlknqvdgyeksikkqesaiyelhnqidalrkayytehkgqinkalqelkeqispviqnketdpetk 593 (761)
T 4fye_A 514 QKGEGKWDQAKLDQLKNQVDGYEKSIKKQESAIYELHNQIDALRKAYYTEHKGQINKALQELKEQISPVIQNKETDPETK 593 (761)
T ss_dssp HSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHH
T ss_pred hccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcChhhcCCCCChhHH
Confidence 46666775 555555665 3777766654 4677777777775 778888888888999987653 455544
No 56
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.22 E-value=1.6e+02 Score=21.07 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=29.6
Q ss_pred hhhhhhhhhhHHHHHHHhHHHh-hHHHHHHHHHHHHHhhhHHHhhhhhhHH
Q 028954 107 HKKEAAWRLRRVELQLESEKAC-QRRDKMEEIEAKVKALGDEQRATLDRIE 156 (201)
Q Consensus 107 HKKEAaWRL~RvElQLESEKa~-rRREKmEEiEaKikaLreEq~a~l~riE 156 (201)
.|+...++.+|----..+=|.+ ++|.+..+++.++..|..|-..--.+|+
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666655443333332 3566677888888888776655545554
No 57
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.83 E-value=2.3e+02 Score=20.89 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=28.8
Q ss_pred hhhHHHHH--HHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 028954 114 RLRRVELQ--LESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAE 179 (201)
Q Consensus 114 RL~RvElQ--LESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaE 179 (201)
.+.|+|+| |++|--.|. - |--++...|....++..++- ||..+-..|..+-+.++.+|-|
T Consensus 9 ~~~~leLQSALeaEIqAKQ--~---i~EELs~vr~~ni~~eskL~-eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 9 EVTLRELQEALEEEVLTRQ--S---LSREMEAIRTDNQNFASQLR-EAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777 555543321 1 22223444555555555443 4444444444444455554444
No 58
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=22.15 E-value=90 Score=21.54 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=37.3
Q ss_pred hhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Q 028954 144 LGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWS------AKHLRLTKFLEQMG 196 (201)
Q Consensus 144 LreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~------~Kh~rL~kfleq~g 196 (201)
|.++=..++..=+.+|+++|...--|.+++|.++-=.=| .+..-+.++++.|-
T Consensus 6 l~~~v~~~l~~s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~kI~ 64 (70)
T 1utg_A 6 FAHVIENLLLGTPSSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKIV 64 (70)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 444455677778889999999999999999987643222 12345667777664
No 59
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=22.14 E-value=1.8e+02 Score=19.27 Aligned_cols=57 Identities=5% Similarity=0.068 Sum_probs=32.6
Q ss_pred HHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028954 140 KVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 140 KikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g 196 (201)
+++....+=...+++|.+.-..-.+...-+|-..=+..-.+|..+..++...|+.|+
T Consensus 20 ~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~ 76 (99)
T 3zbh_A 20 QYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVG 76 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444566666666656666678888777777777664
No 60
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.64 E-value=1.2e+02 Score=22.16 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028954 167 RKDAEAKEQKLAEQWSAKHLRLTKFLEQMGC 197 (201)
Q Consensus 167 rRDAE~KEqKlaEqW~~Kh~rL~kfleq~g~ 197 (201)
||+.+.++++-.++=..|-..+.+++.+-|+
T Consensus 43 Rree~~~~~~~~~er~~Kl~~~~e~l~~~GI 73 (86)
T 3nr7_A 43 RREEESAAAAEVEERTRKLQQYREMLIADGI 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444444444444333333334444444454
No 61
>3a1g_B Polymerase basic protein 2; influenza virus, RNA polymerase, nucleotide-binding, nucleotidyltransferase, nucleus, RNA replication; 1.70A {Influenza a virus} PDB: 2ztt_B
Probab=21.09 E-value=62 Score=21.27 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHhhhhhhHHHHHH
Q 028954 150 ATLDRIEAEYREQIAGLRKDAEAKEQ 175 (201)
Q Consensus 150 a~l~riE~eYrEqla~LrRDAE~KEq 175 (201)
.+|+||+ .|-.|=+|++++|-
T Consensus 2 ~~~~~ik-----elk~L~~d~~a~~i 22 (40)
T 3a1g_B 2 GSMERIK-----ELRNLMSQSRTREI 22 (40)
T ss_dssp HHHHHHH-----HHHHHTTSHHHHHH
T ss_pred chHHHHH-----HHHHHHHHHHHHHH
Confidence 4677886 45567889999874
No 62
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=21.02 E-value=2e+02 Score=24.53 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=15.5
Q ss_pred HHHhhhHHHhhhhhhHHHHHHHHHhhhhh
Q 028954 140 KVKALGDEQRATLDRIEAEYREQIAGLRK 168 (201)
Q Consensus 140 KikaLreEq~a~l~riE~eYrEqla~LrR 168 (201)
+||.-||||+.-|.+.++.-+++...+|.
T Consensus 101 sIRkWREEq~kRLeekDa~sekkk~E~re 129 (205)
T 3lvh_D 101 SIRKWREEQRKRLQELDAASKVMEQEWRE 129 (205)
T ss_dssp HHHHHHHHHTTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544
No 63
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A*
Probab=20.70 E-value=96 Score=27.37 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=34.9
Q ss_pred hhhhhhhhhhhHHHHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHH
Q 028954 106 AHKKEAAWRLRRVELQLESEKACQRRDKMEEIEAKVKALGDEQRATLDRIEAEYR 160 (201)
Q Consensus 106 aHKKEAaWRL~RvElQLESEKa~rRREKmEEiEaKikaLreEq~a~l~riE~eYr 160 (201)
.|+|=+.||.+. .| ++..+||=-+=+--.+-+.|-+++++.|..+..|..
T Consensus 225 nH~~I~~WR~~q---sl--~rT~~rRPDLl~~~~~~~~Ls~~d~~~L~~~~~e~~ 274 (276)
T 4h3z_A 225 HHAEIEQWRRRE---AL--RNTWLKRPDLIVQARKNKLLSRADEAWLASLAKDAS 274 (276)
T ss_dssp CHHHHHHHHHHH---HH--HHHHHHCHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HH--HHHHHHCHHHHHhhhhcCCCCHHHHHHHHHHHHHhh
Confidence 488999998753 22 466677766544334556788899999888877654
Done!