Query 028954
Match_columns 201
No_of_seqs 53 out of 55
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 08:00:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028954.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028954hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p90a1 c.56.8.1 (A:6-274) Hyp 43.9 13 0.00095 28.7 4.6 33 132-164 231-266 (269)
2 d1e52a_ a.2.9.1 (A:) C-termina 40.3 5.8 0.00043 25.6 1.6 33 136-168 14-50 (56)
3 d1wa8a1 a.25.3.1 (A:1-99) ESAT 40.0 42 0.0031 21.5 8.5 64 133-196 9-72 (99)
4 d1wa8b1 a.25.3.1 (B:602-695) E 30.4 64 0.0046 20.7 7.2 58 139-196 15-72 (94)
5 d1fpoa2 a.23.1.1 (A:77-171) HS 22.0 1E+02 0.0074 20.2 7.4 34 130-163 22-60 (95)
6 d2vcha1 c.87.1.10 (A:6-476) Hy 21.5 54 0.0039 24.4 4.5 32 119-150 419-450 (471)
7 d1f5na1 a.114.1.1 (A:284-583) 18.3 1.6E+02 0.012 21.1 9.5 14 153-166 250-263 (300)
8 d1sa0e_ a.137.10.1 (E:) Stathm 17.8 31 0.0023 24.5 2.3 45 132-176 82-126 (138)
9 d1k4ta1 a.2.8.1 (A:641-712) Eu 15.3 1.6E+02 0.012 19.6 6.1 10 134-143 4-13 (72)
10 d2ayua1 d.305.1.1 (A:70-370) N 14.6 1.7E+02 0.012 23.1 6.4 40 137-177 23-62 (301)
No 1
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=43.88 E-value=13 Score=28.69 Aligned_cols=33 Identities=12% Similarity=0.336 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhhHH---HhhhhhhHHHHHHHHHh
Q 028954 132 DKMEEIEAKVKALGDE---QRATLDRIEAEYREQIA 164 (201)
Q Consensus 132 EKmEEiEaKikaLreE---q~a~l~riE~eYrEqla 164 (201)
++.|+||++|+.+.++ =...++++|.+|-+.+.
T Consensus 231 e~Ae~~e~~i~~l~e~~~e~~~~v~~LE~~yD~~~~ 266 (269)
T d2p90a1 231 RDAEKVHRQLMEQTEESSEIQRVVGALEQQYDSELE 266 (269)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhHhhhhh
Confidence 4456677788877764 35667888888876554
No 2
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=40.34 E-value=5.8 Score=25.59 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=17.9
Q ss_pred HHHHHHHhhhHHHhhhhhhHH----HHHHHHHhhhhh
Q 028954 136 EIEAKVKALGDEQRATLDRIE----AEYREQIAGLRK 168 (201)
Q Consensus 136 EiEaKikaLreEq~a~l~riE----~eYrEqla~LrR 168 (201)
+++..|+.|+.+=..+...+| +.||+|+..|+.
T Consensus 14 el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~ 50 (56)
T d1e52a_ 14 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 444555555555444444443 357777777654
No 3
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=40.00 E-value=42 Score=21.52 Aligned_cols=64 Identities=9% Similarity=0.191 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028954 133 KMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 133 KmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g 196 (201)
.|+..-.+|+....+=...|.+|.+.-....++..-+|-..=.....+|...-.+|.+.|+.|.
T Consensus 9 ~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~ 72 (99)
T d1wa8a1 9 TLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEIS 72 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666667777777776777788888888888889999999999999988774
No 4
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.39 E-value=64 Score=20.71 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=42.7
Q ss_pred HHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028954 139 AKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKLAEQWSAKHLRLTKFLEQMG 196 (201)
Q Consensus 139 aKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKlaEqW~~Kh~rL~kfleq~g 196 (201)
..|+.-..+=...|+.|++.-..-.+...-||-..=+-+..+|...-.+|...|.+|+
T Consensus 15 ~~i~~~~~~i~~~l~~L~~~~~~l~~~W~G~A~~af~~~~~~W~~~~~~l~~~L~~i~ 72 (94)
T d1wa8b1 15 SAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLA 72 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455666666666666778888877788899999999999999999875
No 5
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=22.00 E-value=1e+02 Score=20.20 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=16.1
Q ss_pred HHHHHHHHHHH-----HHhhhHHHhhhhhhHHHHHHHHH
Q 028954 130 RRDKMEEIEAK-----VKALGDEQRATLDRIEAEYREQI 163 (201)
Q Consensus 130 RREKmEEiEaK-----ikaLreEq~a~l~riE~eYrEql 163 (201)
-||++|++.+. +..|..+=...+..+..+...++
T Consensus 22 ~RE~lee~~~~~d~~~l~~l~~ei~~~~~~~~~~l~~~~ 60 (95)
T d1fpoa2 22 LREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQL 60 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666433 45554444444444444444333
No 6
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.50 E-value=54 Score=24.37 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=19.8
Q ss_pred HHHHHhHHHhhHHHHHHHHHHHHHhhhHHHhh
Q 028954 119 ELQLESEKACQRRDKMEEIEAKVKALGDEQRA 150 (201)
Q Consensus 119 ElQLESEKa~rRREKmEEiEaKikaLreEq~a 150 (201)
..=|++|+...-|+|+.++..++|.-.+|...
T Consensus 419 ~~vl~~~~~~~~r~ra~~l~e~~~~a~~~gG~ 450 (471)
T d2vcha1 419 KGLMEGEEGKGVRNKMKELKEAACRVLKDDGT 450 (471)
T ss_dssp HHHHTSTHHHHHHHHHHHHHHHHHHHTSTTSH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33345677667777777777776655555443
No 7
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.25 E-value=1.6e+02 Score=21.06 Aligned_cols=14 Identities=7% Similarity=0.245 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHhhh
Q 028954 153 DRIEAEYREQIAGL 166 (201)
Q Consensus 153 ~riE~eYrEqla~L 166 (201)
.+++.+....+...
T Consensus 250 ~~~e~e~~~~~~e~ 263 (300)
T d1f5na1 250 EKMENDRVQLLKEQ 263 (300)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 8
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.79 E-value=31 Score=24.47 Aligned_cols=45 Identities=11% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHH
Q 028954 132 DKMEEIEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQK 176 (201)
Q Consensus 132 EKmEEiEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqK 176 (201)
-++|+....++..++.-..-|.++|.....++..+.+-+..++.|
T Consensus 82 k~~E~~~~~~~~~~e~le~k~e~~ee~rea~l~~~~~k~~eee~k 126 (138)
T d1sa0e_ 82 KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKH 126 (138)
T ss_dssp HHHHHHHHHHHHHSTTTTTTTTHHHHHHHHHHHHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345666666677777667777777776666776666555444443
No 9
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.26 E-value=1.6e+02 Score=19.59 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q 028954 134 MEEIEAKVKA 143 (201)
Q Consensus 134 mEEiEaKika 143 (201)
|+-+-.||.+
T Consensus 4 MenLq~KI~~ 13 (72)
T d1k4ta1 4 MMNLQTKIDA 13 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 10
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.61 E-value=1.7e+02 Score=23.11 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=23.5
Q ss_pred HHHHHHhhhHHHhhhhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 028954 137 IEAKVKALGDEQRATLDRIEAEYREQIAGLRKDAEAKEQKL 177 (201)
Q Consensus 137 iEaKikaLreEq~a~l~riE~eYrEqla~LrRDAE~KEqKl 177 (201)
+-.+|.||+.=|.. .+.||++|.+.+..|++.-..+=+-|
T Consensus 23 v~~rv~aLk~lq~e-~~~le~~f~~e~~~LE~ky~~~~~pl 62 (301)
T d2ayua1 23 VKEKLLSLKTLQSE-LFEVEKEFQVEMFELENKFLQKYKPI 62 (301)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 33455666655543 35577777777777766555554444
Done!