BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028956
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42
PE=1 SV=1
Length = 295
Score = 294 bits (752), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 145/180 (80%), Positives = 159/180 (88%)
Query: 22 LILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 81
L P VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFV
Sbjct: 116 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFV 175
Query: 82 ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 141
E PENNEKPM Q+SR KFKI+S+KVK +DYVPELFDEQKD + EQILRV+FL+PER
Sbjct: 176 EPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSN 235
Query: 142 PALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 201
PALEKLKRQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 236 PALEKLKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 295
>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41
PE=2 SV=1
Length = 266
Score = 275 bits (702), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/183 (73%), Positives = 156/183 (85%), Gaps = 1/183 (0%)
Query: 20 SSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79
S L P VRSAIK+KNTSKSH AFKFQTTAPKSC+MRPPG +LAPGES+ ATVFK
Sbjct: 83 SYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFATVFK 142
Query: 80 FVELPENNEK-PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 138
FVE PENNEK P+ QKS+ KFKI+S+KVK V+YVPELFDEQKDQ A EQ+LRV+F++ +
Sbjct: 143 FVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFIDAD 202
Query: 139 RPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGV 198
RP ALEKLKRQL +A+AAV ARKKPP +TGPR++GEGLVIDEWKERRE+YLARQQVE V
Sbjct: 203 RPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGEGLVIDEWKERREKYLARQQVESV 262
Query: 199 DSV 201
DS+
Sbjct: 263 DSL 265
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 236 bits (603), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 128/183 (69%), Positives = 145/183 (79%), Gaps = 2/183 (1%)
Query: 20 SSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79
+ L P VRSAIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IATVFK
Sbjct: 106 AKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFK 165
Query: 80 FVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 139
FVE PENNEKPM QKS KFKI+S+K+K DY+PELF+EQKD + EQ++RVVFL+PE
Sbjct: 166 FVEPPENNEKPMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPEN 225
Query: 140 PEPALEKLKRQLADADAAVAARKKPPED-TGPRIIGEGLVIDEWKERRERYLARQQVEGV 198
P +EKLK QLA+ADAA ARKK E GP+ IGEGLVIDEWK+RRERYLA+QQ GV
Sbjct: 226 PNSMMEKLKSQLAEADAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQ-GGV 284
Query: 199 DSV 201
D+
Sbjct: 285 DAA 287
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKS 95
+K+ N ++++VAFK +TT+PK F+RP ++ P +S I V L E P +
Sbjct: 31 LKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIR----VTLQAQREYPPDMQC 86
Query: 96 RDKFKIISMKV--KADVDYVPE-LFDEQKDQTAAEQILRVVFLNPERPEPALE 145
+DKF + S V DVD +P+ F + +T E L+V ++ P + + E
Sbjct: 87 KDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITPSTTQRSSE 139
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS2 PE=1 SV=3
Length = 244
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 38 IKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ-KSR 96
I N S +AFK +TTAPK +RP A++APGE++ V F+ L E+P K R
Sbjct: 27 ISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVI-FLGL---TEEPAADFKCR 82
Query: 97 DKFKIIS------MKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 138
DKF +I+ + KA D +L E K Q +++I ++P+
Sbjct: 83 DKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAISKKIKVKYLISPD 130
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 25 PISSTFP------VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVF 78
P+ FP + ++ + N + ++VAFK +TT PK +RP ++ P +T
Sbjct: 27 PLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR----STCE 82
Query: 79 KFVELPENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL 135
V + E P + +DKF + + V + PE+F ++ E LRV ++
Sbjct: 83 VLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYV 142
Query: 136 NPERP 140
P RP
Sbjct: 143 APPRP 147
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKS 95
+++ NT+ +VAFK +TT+PK +RP ++AP + TV + E P
Sbjct: 27 VQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI----MQAFKEPPPDMVC 82
Query: 96 RDKFKIISMKVKA---DVDYVPELFDEQKDQTAAEQILRVVFLNP-ERPE 141
+DKF I S V A D D +F + + + E LRV + P + PE
Sbjct: 83 KDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSDSPE 132
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 41 TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFK 100
T+ VAFK +TT P+ +RP ++ PG+S T V + E P+ + +DKF
Sbjct: 34 TTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVT----VTMQAQKEAPLDMQCKDKFL 89
Query: 101 IISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL--NPERPEP 142
+ ++ V + + E+F+++ + + LRVV++ NP P P
Sbjct: 90 VQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIPANPPSPVP 136
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 23 ILPISSTFP------VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 76
I P+ FP + ++ + N + ++VAFK +TT PK +RP ++ P S
Sbjct: 8 IDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSSEV- 66
Query: 77 VFKFVELPENNEKPMYQKSRDKF---KIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 133
V + E P + +DKF +++ D E+F ++ E LRVV
Sbjct: 67 ---LVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVV 123
Query: 134 FLNPERP 140
++ P RP
Sbjct: 124 YVAPPRP 130
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus
scrofa GN=VAPB PE=3 SV=1
Length = 243
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
V + +K+ N + +V FK +TTAP+ +RP I+ G S+ +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPFDYDP- 80
Query: 92 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 134
+KS+ KF + SM AD + + E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPADTSDMEAAWKEAKPEDLMDSKLRCVF 123
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 22 LILPISSTFP------VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIA 75
+I P+ FP V ++ + N ++++VAFK +TT K ++RP ++ P S
Sbjct: 178 IIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSCEV 237
Query: 76 TVFKFVELPENNEKPMYQKSRDKF----KIISMKVKADVDYVPELFDEQKDQTAAEQILR 131
V + E P + RDK K++ + A D E+F ++ A E L+
Sbjct: 238 LVI----MQALKEAPADMQCRDKLLFQCKVVEPETTAK-DVTSEMFSKEAGHPAEETRLK 292
Query: 132 VVFLNPERP 140
V+++ P +P
Sbjct: 293 VMYVTPPQP 301
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 34 SAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ 93
++ + N + ++VAFK QTT PK ++P ++ P S V + E P +
Sbjct: 26 CSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSSCEV----LVVMQALKEAPADR 81
Query: 94 KSRDKFKIISMKV----KADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKR 149
+ +DK + KV D + E+F ++ E I +++++ P +P+ +++
Sbjct: 82 QCKDKL-LFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYVAPPQPQSPVQEGLE 140
Query: 150 QLADADAAVAARKKPPED-TGP--------RIIGEGLVID 180
+ A+V+ + E GP R+ E L+ID
Sbjct: 141 DGSSPSASVSDKGNASEVFVGPSVGIVDLIRMSDELLIID 180
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B OS=Rattus
norvegicus GN=Vapb PE=1 SV=3
Length = 243
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
V + +K+ N + +V FK +TTAP+ +RP ++ G SL +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVSVM----LQPFDYDP- 80
Query: 92 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 134
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS22 PE=1 SV=2
Length = 175
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKS 95
IK++N + V FK +T+AP +RP AI+ ES+ + F+ LP++ +
Sbjct: 22 IKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESVNVQIV-FLGLPKSTADDEMDQK 80
Query: 96 RDKFKIISMKVKADVDYV---------PELFDEQKDQTAAEQI 129
RDKF I+++ + A V P L ++ KD ++I
Sbjct: 81 RDKFLIVTLPIPAAYQNVEDGELLSDWPNLEEQYKDDIVFKKI 123
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos
taurus GN=VAPB PE=2 SV=1
Length = 243
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
V + +K+ N + +V FK +TTAP+ +RP I+ G S+ +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPFDYDP- 80
Query: 92 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 134
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|O95292|VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C OS=Homo
sapiens GN=VAPB PE=1 SV=3
Length = 243
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
V + +K+ N + +V FK +TTAP+ +RP I+ G S+ +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPFDYDP- 80
Query: 92 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 134
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos
taurus GN=VAPA PE=2 SV=1
Length = 249
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
V + +K++N S V FK +TTAP+ +RP I+ PG ++ +V L + P
Sbjct: 33 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTVTVSVM----LQPFDYDP- 87
Query: 92 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 138
+KS+ KF + ++ ++ + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
abelii GN=VAPA PE=2 SV=2
Length = 249
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
V + +K++N S V FK +TTAP+ +RP I+ PG ++ +V L + P
Sbjct: 33 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM----LQPFDYDP- 87
Query: 92 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 138
+KS+ KF + ++ + + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
sapiens GN=VAPA PE=1 SV=3
Length = 249
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
V + +K++N S V FK +TTAP+ +RP I+ PG ++ +V L + P
Sbjct: 33 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM----LQPFDYDP- 87
Query: 92 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 138
+KS+ KF + ++ + + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 20 SSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79
S+++ P T V+ ++++NT+ + FK +TTAPK +RP G + E+ A +
Sbjct: 7 STIVFPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRI---EANSAVSVE 63
Query: 80 FVELPENNEKPMYQKSRDKFKIISMKVKADVDY--VPELFDEQKDQTAAEQILRVVF 134
+ P ++E K RDKF + S ++K ++ + +++ + +E+ +R V+
Sbjct: 64 VILQPLDHEPAPGTKCRDKFLVQSTELKPELQGMDIADIWTQVSKANISERKIRCVY 120
>sp|Q9QY76|VAPB_MOUSE Vesicle-associated membrane protein-associated protein B OS=Mus
musculus GN=Vapb PE=2 SV=3
Length = 243
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
V + +K+ N + +V FK +TT P+ +RP ++ G SL +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGASLNVSVM----LQPFDYDP- 80
Query: 92 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 134
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A OS=Mus
musculus GN=Vapa PE=1 SV=2
Length = 249
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
V + +K++N S V FK +TTAP+ +RP I+ PG + +V L + P
Sbjct: 33 VTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM----LQPFDYDP- 87
Query: 92 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 138
+KS+ KF + ++ ++ + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein
OS=Aplysia californica PE=2 SV=1
Length = 260
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 24/179 (13%)
Query: 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
V + +K+ N + + FK +TTAPK +RP IL P S+ V L N P
Sbjct: 26 VTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSIAVAVM----LQPFNYDP- 80
Query: 92 YQKSRDKFKIISMKVKADVDYVPE----LFDEQKDQTAAEQILRVVFLNPERPEPALEKL 147
+K++ KF + SM D+V E L+ + ++ + LR VF P+ A
Sbjct: 81 NEKNKHKFMVQSMYAP---DHVVESQELLWKDAPPESLMDTKLRCVFEMPDGSHQAPASD 137
Query: 148 KRQLADA----------DAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVE 196
+ DA D VA+RK E P+ +G E ++ + L + Q E
Sbjct: 138 ASRATDAGAHFSESALEDPTVASRKT--ETQSPKRVGAVGSAGEDVKKLQHELKKAQSE 194
>sp|Q9Z270|VAPA_RAT Vesicle-associated membrane protein-associated protein A OS=Rattus
norvegicus GN=Vapa PE=1 SV=3
Length = 249
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91
V + +K++N S V FK +TTAP+ +RP ++ PG + +V L + P
Sbjct: 33 VTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM----LQPFDYDP- 87
Query: 92 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 138
+KS+ KF + ++ ++ + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|P53022|MSP2_GLORO Major sperm protein 2 OS=Globodera rostochiensis GN=MSP-2 PE=2
SV=2
Length = 126
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 73
+++ N + + F F+TT PK M PP +L P ES+
Sbjct: 31 VRVINPGTNRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|P53021|MSP1_GLORO Major sperm protein 1 OS=Globodera rostochiensis GN=MSP-1 PE=2
SV=2
Length = 126
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 73
++I N + F F+TT PK M PP +L P ES+
Sbjct: 31 VRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|P53023|MSP3_GLORO Major sperm protein 3 OS=Globodera rostochiensis GN=MSP-3 PE=2
SV=2
Length = 126
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 73
++I N + F F+TT PK M PP +L P ES+
Sbjct: 31 VRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ-K 94
I + N + V FK +TTAPK +RP + P +TV V L E+P K
Sbjct: 23 ISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPK----STVNVQVLLQAMKEEPAPDFK 78
Query: 95 SRDKFKIISMKV----KADVDYVPELFDEQKDQTAA--EQILRVVFLNPERPEPALEKLK 148
RDKF I SM + ++V+ E + E + Q + ++ +R V+ + P+ A ++++
Sbjct: 79 CRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVYSTKQPPQSADKQVE 138
Query: 149 R 149
Sbjct: 139 N 139
>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2
PE=1 SV=2
Length = 518
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 33 RSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 73
++ I + N +K+ VAFK +TTAP+ ++P + PG S+
Sbjct: 347 KTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 387
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2
PE=1 SV=1
Length = 518
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 33 RSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 73
++ I + N +K+ VAFK +TTAP+ ++P + PG S+
Sbjct: 347 KTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASV 387
>sp|Q19832|MSP3_CAEEL Major sperm protein 3 OS=Caenorhabditis elegans GN=msp-3 PE=2
SV=3
Length = 127
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 89
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q21244|MSP63_CAEEL Major sperm protein 63 OS=Caenorhabditis elegans GN=msp-63 PE=2
SV=3
Length = 127
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 89
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q94053|MSP78_CAEEL Major sperm protein 78 OS=Caenorhabditis elegans GN=msp-78 PE=2
SV=3
Length = 127
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 89
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P05634|MSP10_CAEEL Major sperm protein 10/36/56/76 OS=Caenorhabditis elegans
GN=msp-10 PE=2 SV=4
Length = 127
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 89
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142
OS=Caenorhabditis elegans GN=msp-19 PE=1 SV=2
Length = 127
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 89
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q9TVW5|MSP77_CAEEL Major sperm protein 77/79 OS=Caenorhabditis elegans GN=msp-77
PE=2 SV=3
Length = 127
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 89
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q23519|MS152_CAEEL Major sperm protein 152 OS=Caenorhabditis elegans GN=msp-152 PE=2
SV=3
Length = 127
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 89
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 34 SAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ 93
++ + N + ++VAFK +TT + +RP ++ P +T V + E P
Sbjct: 26 CSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPK----STCKVLVTMQAQKEVPSDM 81
Query: 94 KSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL 135
+S +KF I S+ V + E+F ++ E LRV ++
Sbjct: 82 QSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRVTYV 126
>sp|Q17856|MSP55_CAEEL Major sperm protein 55/57 OS=Caenorhabditis elegans GN=msp-55
PE=2 SV=3
Length = 127
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 89
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIVYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P53018|MSP32_CAEEL Major sperm protein 32 OS=Caenorhabditis elegans GN=msp-32 PE=2
SV=1
Length = 190
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 36 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 89
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 95 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 152
>sp|Q98KJ4|MIAA_RHILO tRNA dimethylallyltransferase OS=Rhizobium loti (strain MAFF303099)
GN=miaA PE=3 SV=1
Length = 321
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 71 ESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQIL 130
E L A+ +E +P+ + +F +I A VD + FD+ D+ A E++
Sbjct: 179 EVLDASGRSILEWQAERGRPLIDRQTARFLVIEPDRAALVDRIERRFDQMLDKGALEEVR 238
Query: 131 RVVFLNPERPEPALEKLKRQLADADAAVAARKKPPE 166
++ L + PA++ + + D AA+A + PE
Sbjct: 239 QLAALGLDPDLPAMKAIG--VRDLQAAMAGQLSFPE 272
>sp|P25648|SRB8_YEAST Mediator of RNA polymerase II transcription subunit 12
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRB8 PE=1 SV=2
Length = 1427
Score = 30.4 bits (67), Expect = 9.2, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 76 TVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 133
T F ++ ENNE M + F +++ D ++FD+ KD E I ++V
Sbjct: 1093 TCFCIKKIMENNEPAMAMEDLKNFIFQIIEITNSNDLCSQIFDQLKDMQTIEMITQIV 1150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,739,270
Number of Sequences: 539616
Number of extensions: 3160666
Number of successful extensions: 9400
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 9350
Number of HSP's gapped (non-prelim): 74
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)