Query 028956
Match_columns 201
No_of_seqs 148 out of 594
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:11:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0439 VAMP-associated protei 100.0 1.2E-30 2.6E-35 219.7 14.7 184 10-200 8-218 (218)
2 COG5066 SCS2 VAMP-associated p 100.0 2.1E-28 4.5E-33 206.3 12.0 118 10-135 2-121 (242)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 2.2E-23 4.7E-28 156.7 12.7 104 10-121 1-108 (109)
4 PF14874 PapD-like: Flagellar- 98.5 1.3E-06 2.8E-11 64.9 10.3 66 10-79 3-71 (102)
5 PF00345 PapD_N: Pili and flag 96.7 0.05 1.1E-06 41.6 11.6 63 10-79 1-72 (122)
6 PF14646 MYCBPAP: MYCBP-associ 94.3 1.2 2.6E-05 41.6 13.2 112 20-152 237-361 (426)
7 PF11614 FixG_C: IG-like fold 92.6 0.72 1.6E-05 35.1 7.4 71 7-80 9-83 (118)
8 PRK09918 putative fimbrial cha 92.2 6.8 0.00015 33.7 13.8 108 10-138 25-137 (230)
9 PF07610 DUF1573: Protein of u 92.0 0.71 1.5E-05 29.8 5.7 42 36-78 2-44 (45)
10 PRK11385 putativi pili assembl 88.7 14 0.00031 32.1 12.6 107 10-137 27-147 (236)
11 PRK15249 fimbrial chaperone pr 86.8 8 0.00017 33.8 10.1 63 10-79 29-102 (253)
12 PRK09926 putative chaperone pr 86.5 8.8 0.00019 33.3 10.1 63 10-79 26-98 (246)
13 PF06280 DUF1034: Fn3-like dom 85.9 2.1 4.6E-05 32.2 5.3 51 29-79 7-78 (112)
14 smart00809 Alpha_adaptinC2 Ada 84.0 5.7 0.00012 29.0 6.8 50 30-79 18-71 (104)
15 PRK15211 fimbrial chaperone pr 83.0 18 0.00039 31.3 10.4 63 10-79 23-91 (229)
16 PF03173 CHB_HEX: Putative car 82.4 2.5 5.5E-05 34.9 4.7 32 48-79 69-102 (164)
17 PF05506 DUF756: Domain of unk 82.2 6.6 0.00014 28.5 6.4 45 32-79 20-65 (89)
18 PRK15295 fimbrial assembly cha 81.9 20 0.00044 30.8 10.3 61 10-79 20-89 (226)
19 PRK15299 fimbrial chaperone pr 81.7 32 0.0007 29.4 12.9 110 10-137 23-140 (227)
20 PRK15246 fimbrial assembly cha 81.4 35 0.00075 29.5 13.7 111 10-138 11-134 (233)
21 PF02883 Alpha_adaptinC2: Adap 78.3 7.3 0.00016 29.1 5.7 51 29-79 23-77 (115)
22 PF00927 Transglut_C: Transglu 76.6 10 0.00022 28.1 6.0 52 28-79 13-74 (107)
23 PF06030 DUF916: Bacterial pro 76.4 20 0.00044 27.9 7.9 58 22-79 19-101 (121)
24 PF10633 NPCBM_assoc: NPCBM-as 76.2 4.6 0.0001 28.4 3.9 52 28-79 3-58 (78)
25 PRK15208 long polar fimbrial c 74.3 44 0.00096 28.6 10.2 63 10-79 22-90 (228)
26 PRK15290 lfpB fimbrial chapero 73.9 46 0.00099 29.1 10.2 111 10-137 38-156 (243)
27 TIGR03079 CH4_NH3mon_ox_B meth 73.9 8.9 0.00019 35.8 6.0 52 28-79 280-352 (399)
28 PRK15249 fimbrial chaperone pr 73.6 5.6 0.00012 34.8 4.5 74 2-77 145-219 (253)
29 PRK15195 fimbrial chaperone pr 72.7 44 0.00096 28.8 9.8 61 10-79 26-94 (229)
30 PRK15192 fimbrial chaperone Bc 71.6 68 0.0015 27.9 13.8 84 9-108 22-119 (234)
31 PRK15254 fimbrial chaperone pr 70.7 65 0.0014 28.0 10.4 87 10-108 17-110 (239)
32 PRK15192 fimbrial chaperone Bc 70.0 9.2 0.0002 33.2 5.0 67 2-77 135-202 (234)
33 COG3121 FimC P pilus assembly 69.4 9.7 0.00021 32.9 5.0 69 2-77 138-208 (235)
34 PRK15188 fimbrial chaperone pr 68.1 80 0.0017 27.3 12.9 111 10-138 28-145 (228)
35 PRK09926 putative chaperone pr 67.8 11 0.00024 32.7 5.1 73 2-77 142-216 (246)
36 PF11611 DUF4352: Domain of un 67.4 25 0.00054 26.0 6.4 52 28-79 34-99 (123)
37 PRK15246 fimbrial assembly cha 67.2 11 0.00023 32.8 4.8 66 3-77 127-192 (233)
38 PRK15290 lfpB fimbrial chapero 65.8 11 0.00025 32.8 4.7 66 2-77 149-215 (243)
39 COG3121 FimC P pilus assembly 65.5 89 0.0019 26.9 13.7 112 10-141 28-149 (235)
40 PF12690 BsuPI: Intracellular 65.1 32 0.0007 24.9 6.3 47 33-79 3-68 (82)
41 TIGR02745 ccoG_rdxA_fixG cytoc 64.6 75 0.0016 30.2 10.2 72 6-79 323-397 (434)
42 PRK15218 fimbrial chaperone pr 64.4 66 0.0014 27.7 9.1 101 21-137 26-139 (226)
43 PRK15233 putative fimbrial cha 63.7 96 0.0021 27.2 10.1 69 32-109 56-131 (246)
44 PRK15295 fimbrial assembly cha 62.2 15 0.00032 31.6 4.7 67 3-78 130-198 (226)
45 PRK15224 pili assembly chapero 61.6 69 0.0015 27.9 8.8 76 21-108 36-118 (237)
46 PRK15188 fimbrial chaperone pr 61.6 15 0.00032 31.8 4.6 65 2-75 137-201 (228)
47 PRK11385 putativi pili assembl 60.7 17 0.00037 31.6 4.9 67 2-77 140-207 (236)
48 PF02753 PapD_C: Pili assembly 60.2 10 0.00022 25.8 2.8 44 36-79 1-45 (68)
49 PRK15285 putative fimbrial cha 59.6 1.2E+02 0.0027 26.5 10.5 56 21-79 33-95 (250)
50 PRK15208 long polar fimbrial c 59.4 18 0.00039 31.1 4.7 67 2-77 131-198 (228)
51 PRK15299 fimbrial chaperone pr 58.3 19 0.00042 30.8 4.8 66 3-77 134-200 (227)
52 PF04744 Monooxygenase_B: Mono 57.0 47 0.001 31.1 7.2 58 21-80 255-334 (381)
53 PRK15211 fimbrial chaperone pr 56.1 22 0.00048 30.7 4.8 69 2-76 131-204 (229)
54 PRK15253 putative fimbrial ass 55.1 1.1E+02 0.0024 26.6 9.0 76 21-108 41-128 (242)
55 PF00553 CBM_2: Cellulose bind 54.9 30 0.00064 25.7 4.7 50 30-79 13-82 (101)
56 PRK09918 putative fimbrial cha 54.7 29 0.00063 29.7 5.3 69 2-78 129-200 (230)
57 PF05753 TRAP_beta: Translocon 53.1 69 0.0015 26.7 7.1 51 28-79 36-95 (181)
58 PRK15274 putative periplasmic 52.7 1.6E+02 0.0036 25.9 10.5 78 21-108 34-120 (257)
59 smart00637 CBD_II CBD_II domai 50.9 62 0.0013 23.2 5.8 48 32-79 8-75 (92)
60 PHA01327 hypothetical protein 48.3 18 0.00039 23.7 2.2 14 180-193 20-33 (49)
61 PF07705 CARDB: CARDB; InterP 45.0 71 0.0015 22.3 5.3 52 28-79 17-69 (101)
62 PRK15253 putative fimbrial ass 44.7 43 0.00092 29.2 4.8 65 4-76 149-214 (242)
63 PF14796 AP3B1_C: Clathrin-ada 43.9 1.3E+02 0.0028 24.4 7.1 59 21-79 72-138 (145)
64 PRK15218 fimbrial chaperone pr 42.9 51 0.0011 28.4 5.0 66 4-77 134-199 (226)
65 PRK15224 pili assembly chapero 42.6 40 0.00086 29.4 4.3 62 6-76 146-208 (237)
66 PF07233 DUF1425: Protein of u 41.4 1.3E+02 0.0027 22.2 6.3 51 29-79 23-80 (94)
67 PRK15195 fimbrial chaperone pr 40.4 53 0.0011 28.3 4.6 64 3-76 137-201 (229)
68 PF08277 PAN_3: PAN-like domai 40.3 40 0.00086 22.8 3.2 19 32-50 53-71 (71)
69 PF13473 Cupredoxin_1: Cupredo 39.8 1.5E+02 0.0032 21.6 6.8 53 11-79 30-82 (104)
70 TIGR02656 cyanin_plasto plasto 38.3 1.2E+02 0.0026 22.1 5.8 15 64-78 61-75 (99)
71 PRK15254 fimbrial chaperone pr 37.6 72 0.0016 27.8 5.1 70 2-78 126-199 (239)
72 PRK15308 putative fimbrial pro 36.6 2.9E+02 0.0062 24.1 10.7 85 10-110 17-119 (234)
73 smart00605 CW CW domain. 34.8 71 0.0015 23.1 4.0 22 35-56 58-80 (94)
74 PF03168 LEA_2: Late embryogen 33.8 1.6E+02 0.0036 20.4 6.2 45 35-79 1-51 (101)
75 PF11616 EZH2_WD-Binding: WD r 32.8 21 0.00046 21.6 0.7 9 178-186 18-26 (30)
76 PF06159 DUF974: Protein of un 31.6 1.5E+02 0.0033 25.7 6.1 51 29-79 13-75 (249)
77 PF06483 ChiC: Chitinase C; I 29.7 62 0.0014 27.3 3.2 26 44-80 116-141 (180)
78 PF13205 Big_5: Bacterial Ig-l 29.2 2.1E+02 0.0046 20.3 6.6 56 21-79 26-84 (107)
79 PF11538 Snurportin1: Snurport 28.0 44 0.00096 21.4 1.6 15 181-195 15-29 (40)
80 PRK02710 plastocyanin; Provisi 27.8 2.2E+02 0.0048 21.6 5.9 15 65-79 82-96 (119)
81 PF11668 Gp_UL130: HCMV glycop 25.5 1.8E+02 0.0039 23.9 5.1 45 20-64 100-154 (156)
82 PF09640 DUF2027: Domain of un 25.3 2.6E+02 0.0055 23.3 6.0 68 32-110 18-85 (162)
83 PF12086 DUF3563: Protein of u 23.1 56 0.0012 22.8 1.5 13 181-193 18-30 (59)
84 PF00127 Copper-bind: Copper b 23.1 2E+02 0.0043 20.9 4.7 16 63-78 60-75 (99)
85 PRK15285 putative fimbrial cha 22.1 2.3E+02 0.005 24.8 5.6 66 6-77 139-208 (250)
86 PRK15233 putative fimbrial cha 22.1 1E+02 0.0022 27.0 3.4 62 6-74 160-221 (246)
87 PF11906 DUF3426: Protein of u 21.1 2.5E+02 0.0055 21.7 5.2 50 30-79 68-134 (149)
88 PF09478 CBM49: Carbohydrate b 20.9 3.1E+02 0.0067 19.3 5.4 21 33-53 20-41 (80)
89 KOG1769 Ubiquitin-like protein 20.7 1.2E+02 0.0027 23.2 3.1 26 32-57 19-44 (99)
90 COG3311 AlpA Predicted transcr 20.5 51 0.0011 23.6 0.9 22 165-187 42-65 (70)
91 PRK15274 putative periplasmic 20.4 2.3E+02 0.0049 25.0 5.2 66 5-77 139-209 (257)
No 1
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-30 Score=219.71 Aligned_cols=184 Identities=34% Similarity=0.464 Sum_probs=157.5
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 89 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e~ 89 (201)
.|.++|.+ +|.|.+++.+++++.|+|+|+++.++|||||||+|++||||||.|+|.||+++.|.|.+ +| ....
T Consensus 8 ~l~i~P~~---~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~---q~-~~~~ 80 (218)
T KOG0439|consen 8 LLEIEPSD---ELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTH---QP-FEKS 80 (218)
T ss_pred ccccCCCc---eEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEe---cc-CccC
Confidence 57889974 99999999999999999999999999999999999999999999999999999999998 67 3445
Q ss_pred CCCCCCCCeEEEEEEEeCCC-CCChhHhhhccC--CCcceeEEeEEEEeCCCCCCchhHHH---HhhhhhHHHHHHHhcC
Q 028956 90 PMYQKSRDKFKIISMKVKAD-VDYVPELFDEQK--DQTAAEQILRVVFLNPERPEPALEKL---KRQLADADAAVAARKK 163 (201)
Q Consensus 90 p~~~~~kDKFlVqs~~v~~~-~d~~~~lwk~~~--~~~i~e~kLrV~f~~p~~ps~~~e~l---~~~l~~a~~~~~~~~~ 163 (201)
|.+++|+|||+||++.++.+ .....++|+..+ +..+.+.+++|.|+.|..+....++. ..+..+.++...+...
T Consensus 81 P~d~~~r~kF~v~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (218)
T KOG0439|consen 81 PPDFKSRHKFLIQSLKAPPPTTRDVVDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEATKE 160 (218)
T ss_pred chhhcccceEEEEEEecCCccccchhhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCccccccccccc
Confidence 78889999999999999976 567899999988 78899999999999887777666555 5566666677777666
Q ss_pred CCCCC---CCceeeeeeehhHH------------------HHHHHHHHHHhhhcccCC
Q 028956 164 PPEDT---GPRIIGEGLVIDEW------------------KERRERYLARQQVEGVDS 200 (201)
Q Consensus 164 ~~~~~---~~~~~~~~~~~~~~------------------~~~r~~~~~~~~~~~~~~ 200 (201)
..... .+...++.+++++| +++++++++.+|.+...|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
T KOG0439|consen 161 ASDGEVCVKSKEFGEKLELKEELKAFKLKANKVDEERLLKKKKEGRLLAELQAELVIS 218 (218)
T ss_pred cCcccccchhhhhhccccchhhhhccccccccccccchhhhhhhHHHHHhhhhhhccC
Confidence 65543 46677899999999 889999999999876543
No 2
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.95 E-value=2.1e-28 Score=206.28 Aligned_cols=118 Identities=22% Similarity=0.284 Sum_probs=109.6
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 89 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e~ 89 (201)
.+.++|. +.|..++....++.+-|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+| +++.+++
T Consensus 2 aveisp~-----~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVil---q~l~eEp 73 (242)
T COG5066 2 AVEISPQ-----TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVIL---QGLTEEP 73 (242)
T ss_pred ceEecCc-----eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEe---eccccCC
Confidence 5677777 8888899999999999999999999999999999999999999999999999999999 8999999
Q ss_pred CCCCCCCCeEEEEEEEeCCCC--CChhHhhhccCCCcceeEEeEEEEe
Q 028956 90 PMYQKSRDKFKIISMKVKADV--DYVPELFDEQKDQTAAEQILRVVFL 135 (201)
Q Consensus 90 p~~~~~kDKFlVqs~~v~~~~--d~~~~lwk~~~~~~i~e~kLrV~f~ 135 (201)
.++.+|+||||||++..+.+. .+..++|+...+.-|+++||+|+|.
T Consensus 74 apdfKCrdKFLiqs~~~~~~l~g~d~ad~wt~~sk~~i~~rkIrcvys 121 (242)
T COG5066 74 APDFKCRDKFLIQSYRFDWRLSGSDFADHWTSSSKKPIWTRKIRCVYS 121 (242)
T ss_pred CCCccccceeEEEEeccChhhccchHHHHHHhhccccchhhheeEEee
Confidence 999999999999999998654 4569999999988899999999998
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.90 E-value=2.2e-23 Score=156.67 Aligned_cols=104 Identities=25% Similarity=0.353 Sum_probs=82.8
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 89 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e~ 89 (201)
.|.|+|.+ .|.|..+.++..++.|+|+|+++.+||||||||+|.+|+|+|+.|+|.||+++.|.|++ ++.....
T Consensus 1 ~l~v~P~~---~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~---~~~~~~~ 74 (109)
T PF00635_consen 1 DLSVEPSE---LIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITF---QPFDFEP 74 (109)
T ss_dssp -CEEESSS---EEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTTT
T ss_pred CeEEeCCc---ceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEE---EecccCC
Confidence 37899995 99999999999999999999999999999999999999999999999999999999998 6654432
Q ss_pred CCCCCCCCeEEEEEEEeCCCCC----ChhHhhhccC
Q 028956 90 PMYQKSRDKFKIISMKVKADVD----YVPELFDEQK 121 (201)
Q Consensus 90 p~~~~~kDKFlVqs~~v~~~~d----~~~~lwk~~~ 121 (201)
. ...+|||+|+++.++++.. .+..+|++..
T Consensus 75 -~-~~~~dkf~I~~~~~~~~~~~~~~~~~~~~~~~~ 108 (109)
T PF00635_consen 75 -S-NKKKDKFLIQSIVVPDNATDPKKDFKQIWKNGK 108 (109)
T ss_dssp -T-STSSEEEEEEEEEE-TT-SSSHHHHHCCHHHSS
T ss_pred -C-CCCCCEEEEEEEEcCCCccchhhhHHHHHhccC
Confidence 1 1239999999999987763 3567777654
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.53 E-value=1.3e-06 Score=64.91 Aligned_cols=66 Identities=23% Similarity=0.265 Sum_probs=58.7
Q ss_pred eeEEccCCCceeEEEccC-CCCceEEEEEEEcCCCCeEEEEEeeCC--CcceeecCCceeeCCCCeEEEEEEe
Q 028956 10 HDHFYPNGAVSSLILPIS-STFPVRSAIKIKNTSKSHVAFKFQTTA--PKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~-~~k~~~~~LtLtN~S~~~VAFKVKTTa--P~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.|.++|. +|.|-.- .+...+..++|+|.|..+..|+|+... ...|.|.|..|.|+||++..+.|++
T Consensus 3 ~l~v~P~----~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~ 71 (102)
T PF14874_consen 3 TLEVSPK----ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTF 71 (102)
T ss_pred EEEEeCC----EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEE
Confidence 7899999 8999764 566788999999999999999997533 5689999999999999999999998
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.69 E-value=0.05 Score=41.61 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=52.0
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCC----C-----cceeecCCceeeCCCCeEEEEEEe
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTA----P-----KSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTa----P-----~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.|.|+|. .+.|... .....++|+|.++.++.+.+.... + ..|.|-|+.-.|+||++..|.|..
T Consensus 1 gi~i~~t----rii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~ 72 (122)
T PF00345_consen 1 GIQISPT----RIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR 72 (122)
T ss_dssp EEEESSS----EEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred CEEEccE----EEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence 3678888 7887763 358899999999999999987553 1 268999999999999999999943
No 6
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=94.31 E-value=1.2 Score=41.57 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=76.5
Q ss_pred eeEEEccCCCCceEEEEE-EEcCCCCeEEEEEeeCC------------CcceeecCCceeeCCCCeEEEEEEeeccCCCC
Q 028956 20 SSLILPISSTFPVRSAIK-IKNTSKSHVAFKFQTTA------------PKSCFMRPPGAILAPGESLIATVFKFVELPEN 86 (201)
Q Consensus 20 ~eL~F~~~~~k~~~~~Lt-LtN~S~~~VAFKVKTTa------------P~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~ 86 (201)
-.|.|.-.++......|+ |.|.+..-|-|..+--. ...|......|+|.||++..+.|+. +|..
T Consensus 237 ~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F---~s~~ 313 (426)
T PF14646_consen 237 IRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMF---KSRK 313 (426)
T ss_pred eEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEE---eCCC
Confidence 478999999987877777 99999999999986432 3468889999999999999999997 5542
Q ss_pred CCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeCCCCCCchhHHHHhhhh
Q 028956 87 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLA 152 (201)
Q Consensus 87 ~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~p~~ps~~~e~l~~~l~ 152 (201)
. .-.++...+..-+. +|. .....-+|+.+-+++..-...++.+++.|+
T Consensus 314 ~-----Gif~E~W~L~t~P~---------l~~----~~~l~v~L~G~~~~~~~~~~~~~~~~~~l~ 361 (426)
T PF14646_consen 314 V-----GIFKERWELRTFPP---------LFG----GASLTVRLHGVCTPPDEYLDKRKMLEEELA 361 (426)
T ss_pred c-----eEEEEEEEEEEecc---------ccC----CCceEEEEEEEEcCchHhHHHHHHHHHHHH
Confidence 1 12356666655332 222 122445777777765444444555555443
No 7
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.58 E-value=0.72 Score=35.07 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=41.4
Q ss_pred eCceeEEccCCCceeEEEc-cCCCC-ceEEEEEEEcCCCCeEEEEEeeCCCcceee-cCCce-eeCCCCeEEEEEEee
Q 028956 7 LPLHDHFYPNGAVSSLILP-ISSTF-PVRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGA-ILAPGESLIATVFKF 80 (201)
Q Consensus 7 ~p~~L~i~P~~~~~eL~F~-~~~~k-~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~V-rP~~G-iI~Pg~s~~I~V~l~ 80 (201)
.|+.+.+-+. +-..|. ...|. ...-.|+|.|.+.++..|.|+...+..+.+ .|... .|.||++..+.|.+.
T Consensus 9 ~~~~~~V~rd---r~~ly~~~~dg~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 9 KPVELNVLRD---RGPLYRELSDGSIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp -SEEEEEEE----SS---------SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred CcEEEEEEec---CCCcEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence 3556666665 344444 33333 446799999999999999999888888888 66455 599999999888873
No 8
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=92.23 E-value=6.8 Score=33.66 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=68.2
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCC-----cceeecCCceeeCCCCeEEEEEEeeccCC
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAP-----KSCFMRPPGAILAPGESLIATVFKFVELP 84 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP-----~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p 84 (201)
.|.++|. .+.|... ....+++|+|.++.++......... .-|.|-|+.-.|+||++..|.|.+ ..
T Consensus 25 ~v~l~~t----Rvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~---~~ 94 (230)
T PRK09918 25 GMVPETS----VVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFIL---KS 94 (230)
T ss_pred eEEEccE----EEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEE---CC
Confidence 5677777 6777654 4678999999998876665543211 259999999999999999999987 22
Q ss_pred CCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeCCC
Q 028956 85 ENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 138 (201)
Q Consensus 85 ~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~p~ 138 (201)
..|.+. ---|.+....++...+. +..=+.....++++-|-+..
T Consensus 95 ---~lp~dr--Es~f~l~v~~IP~~~~~------~~~l~ia~r~~iklfyRP~~ 137 (230)
T PRK09918 95 ---GSPLNT--EHLLRVSFEGVPPKPGG------KNKVVMPIRQDLPVLIQPAA 137 (230)
T ss_pred ---CCCCCe--eEEEEEEEEEcCCCCCC------CCEEEEEEEeEEEEEEeCCC
Confidence 123322 12366666666653221 10112223556777676444
No 9
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=91.96 E-value=0.71 Score=29.77 Aligned_cols=42 Identities=26% Similarity=0.184 Sum_probs=33.9
Q ss_pred EEEEcCCCCeE-EEEEeeCCCcceeecCCceeeCCCCeEEEEEE
Q 028956 36 IKIKNTSKSHV-AFKFQTTAPKSCFMRPPGAILAPGESLIATVF 78 (201)
Q Consensus 36 LtLtN~S~~~V-AFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~ 78 (201)
++++|.++.++ -.+|+|+ =+=..+..+...|.||++..|.|+
T Consensus 2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEE
Confidence 68999998776 6677664 556677778889999999999987
No 10
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=88.65 E-value=14 Score=32.06 Aligned_cols=107 Identities=16% Similarity=0.228 Sum_probs=65.3
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEee--C------------CCcceeecCCceeeCCCCeEEE
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQT--T------------APKSCFMRPPGAILAPGESLIA 75 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKT--T------------aP~~Y~VrP~~GiI~Pg~s~~I 75 (201)
.+.+++. .+.|... ....+++|.|.++.++ =|++ . ...-|.|-|+.=-|+||+...+
T Consensus 27 ~v~l~~T----RvIy~~~---~~~~sv~l~N~~~~p~--LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~l 97 (236)
T PRK11385 27 GVVVGGT----RFIFPAD---RESISILLTNTSQESW--LINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTL 97 (236)
T ss_pred eEEeCce----EEEEcCC---CceEEEEEEeCCCCcE--EEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEE
Confidence 4566776 6777653 4778999999998864 4444 1 1124999999999999999999
Q ss_pred EEEeeccCCCCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeCC
Q 028956 76 TVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 137 (201)
Q Consensus 76 ~V~l~~e~p~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~p 137 (201)
.|.. ... ...|.|. -.-|-+....+++..+. ...=......+|++-|-+.
T Consensus 98 RIi~---~~~-~~LP~DR--ESlf~lnv~~IPp~~~~------~n~L~iair~riKLFyRP~ 147 (236)
T PRK11385 98 RLLR---TES-DILPVDR--ETLFELSIASVPSGKVE------NQSVKVAMRSVFKLFWRPE 147 (236)
T ss_pred EEEE---CCC-CCCCCCc--eEEEEEEEEecCCCcCC------CceEEEEEEeeEEEEEccc
Confidence 9997 221 1123332 23355666666653211 0011223466677766543
No 11
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=86.81 E-value=8 Score=33.81 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=47.6
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCC------C-----cceeecCCceeeCCCCeEEEEEE
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTA------P-----KSCFMRPPGAILAPGESLIATVF 78 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTa------P-----~~Y~VrP~~GiI~Pg~s~~I~V~ 78 (201)
.|.|+|. .+.|... ....+|+|.|.++.++....-+.. | .-|.|-|+.--|+||+...|.|.
T Consensus 29 ~l~l~~T----Rviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~ 101 (253)
T PRK15249 29 SVTILGS----RIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVI 101 (253)
T ss_pred EEEeCce----EEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEE
Confidence 4778888 7777644 367899999999887554442211 1 13999999999999999999999
Q ss_pred e
Q 028956 79 K 79 (201)
Q Consensus 79 l 79 (201)
.
T Consensus 102 ~ 102 (253)
T PRK15249 102 Y 102 (253)
T ss_pred E
Confidence 7
No 12
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=86.54 E-value=8.8 Score=33.35 Aligned_cols=63 Identities=8% Similarity=0.101 Sum_probs=49.1
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCc----------ceeecCCceeeCCCCeEEEEEEe
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPK----------SCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~----------~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.|.|+|. .+.|... ....+++|.|.++.++.--.-...-+ -|.|-|+.--|+||+...|.|..
T Consensus 26 ~i~l~~T----RvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~ 98 (246)
T PRK09926 26 DIVISGT----RIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMY 98 (246)
T ss_pred eEEeCce----EEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEe
Confidence 5677887 7887764 46789999999988766554332211 39999999999999999999997
No 13
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=85.86 E-value=2.1 Score=32.24 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCceEEEEEEEcCCCCeEEEEEeeC-----C---Ccceee-c------------CCceeeCCCCeEEEEEEe
Q 028956 29 TFPVRSAIKIKNTSKSHVAFKFQTT-----A---PKSCFM-R------------PPGAILAPGESLIATVFK 79 (201)
Q Consensus 29 ~k~~~~~LtLtN~S~~~VAFKVKTT-----a---P~~Y~V-r------------P~~GiI~Pg~s~~I~V~l 79 (201)
+...+..|+|+|.+++.+.|++.-. . .+.|.. . |..=.|+||++..|.|++
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti 78 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTI 78 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEE
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEE
Confidence 3447889999999999999998644 1 112221 1 222368999999999998
No 14
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=83.99 E-value=5.7 Score=29.02 Aligned_cols=50 Identities=30% Similarity=0.513 Sum_probs=39.0
Q ss_pred CceEEEEEEEcCCCCeEE-EEEeeCCCcceeec--CCce-eeCCCCeEEEEEEe
Q 028956 30 FPVRSAIKIKNTSKSHVA-FKFQTTAPKSCFMR--PPGA-ILAPGESLIATVFK 79 (201)
Q Consensus 30 k~~~~~LtLtN~S~~~VA-FKVKTTaP~~Y~Vr--P~~G-iI~Pg~s~~I~V~l 79 (201)
....-.++..|.+..++. |.++-..|+.+.++ |..| .|+||+.+.-.+.+
T Consensus 18 ~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i 71 (104)
T smart00809 18 GLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKV 71 (104)
T ss_pred CeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEE
Confidence 457788899999988874 88888888887776 5544 89999887666665
No 15
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=83.02 E-value=18 Score=31.29 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=46.5
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeC------CCcceeecCCceeeCCCCeEEEEEEe
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTT------aP~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.|.+++. .+.|... ....+++|+|.++.++.-..... ..--|.|-|+.-.|+||+...|.|..
T Consensus 23 ~v~l~~T----RvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~ 91 (229)
T PRK15211 23 AFVLNGT----RFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMK 91 (229)
T ss_pred EEEECce----EEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence 4566666 6777653 46889999999988744333221 11249999999999999999999997
No 16
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=82.45 E-value=2.5 Score=34.86 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=24.6
Q ss_pred EEEeeCCCcceeecCCcee--eCCCCeEEEEEEe
Q 028956 48 FKFQTTAPKSCFMRPPGAI--LAPGESLIATVFK 79 (201)
Q Consensus 48 FKVKTTaP~~Y~VrP~~Gi--I~Pg~s~~I~V~l 79 (201)
|+|.-=+-+.|++.|.-|+ |.||+++.|.++-
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~ 102 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVG 102 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEE
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEc
Confidence 6777777788999999997 8999999999885
No 17
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=82.20 E-value=6.6 Score=28.46 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=31.4
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCCccee-ecCCceeeCCCCeEEEEEEe
Q 028956 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCF-MRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 32 ~~~~LtLtN~S~~~VAFKVKTTaP~~Y~-VrP~~GiI~Pg~s~~I~V~l 79 (201)
..-.|+|.|.+...+.|.|... .|. -.|-.=.|.||++..+..-+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~---~y~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDN---AYGGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeC---CcCCCCCEEEEECCCCEEEEEEee
Confidence 4678999999999999999862 122 22333355668877777665
No 18
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=81.89 E-value=20 Score=30.78 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=46.1
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEee--CC-------CcceeecCCceeeCCCCeEEEEEEe
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQT--TA-------PKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKT--Ta-------P~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.|.+++. .+.|... ....+++|.|.++.++ =|++ .. ..-|.|-|+.=.|+||+...|.|..
T Consensus 20 ~i~l~~T----RvI~~~~---~~~~si~i~N~~~~p~--LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~ 89 (226)
T PRK15295 20 SIVVGGT----RLVFDGN---NDESSINVENKDSKAN--LVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIR 89 (226)
T ss_pred cEEeCce----EEEEeCC---CceeEEEEEeCCCCcE--EEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEE
Confidence 4567777 6777664 3578999999998764 3553 11 1249999999999999999999987
No 19
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=81.71 E-value=32 Score=29.41 Aligned_cols=110 Identities=9% Similarity=0.088 Sum_probs=66.5
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCC--------CcceeecCCceeeCCCCeEEEEEEeec
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTA--------PKSCFMRPPGAILAPGESLIATVFKFV 81 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTa--------P~~Y~VrP~~GiI~Pg~s~~I~V~l~~ 81 (201)
.|.|+|. .+.|... ....+|+|+|.++.++.-..-+.. ..-|.|-|+.-.|+||+...|.|..
T Consensus 23 ~i~l~~T----Rvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~-- 93 (227)
T PRK15299 23 GINIGTT----RVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIR-- 93 (227)
T ss_pred eEEECce----EEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEE--
Confidence 4677777 6777665 367899999998876544432211 1239999999999999999999997
Q ss_pred cCCCCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeCC
Q 028956 82 ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 137 (201)
Q Consensus 82 e~p~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~p 137 (201)
... ..|.+.. .-|.+....++...+... ++ .=.....++|++.|-++
T Consensus 94 -~~~--~lP~DrE--slf~lnv~eIP~~~~~~~---~n-~l~iavr~riKLfyRP~ 140 (227)
T PRK15299 94 -TGG--NLPEDRE--SLYWLDIKSIPSSNPDNK---HN-TLMLAVKAEFKLIYRPK 140 (227)
T ss_pred -CCC--CCCCcce--EEEEEEeEecCCCCcccc---cc-eEEEEEeeeeeEEEccc
Confidence 221 1233321 236666666665321100 00 01223456777777544
No 20
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=81.39 E-value=35 Score=29.55 Aligned_cols=111 Identities=11% Similarity=0.173 Sum_probs=67.0
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEee--C------CCc----ceeecCCceeeCCCCeEEEEE
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQT--T------APK----SCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKT--T------aP~----~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
.|.|++. .+.|... ....+++|.|.++.++ -|++ . .|. -|.|-|+.=.|+||+...+.|
T Consensus 11 ~v~l~~T----RvI~~~~---~~~~sv~l~N~~~~p~--LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI 81 (233)
T PRK15246 11 AVNIDRT----RIIFASD---DVAQSLTLSNDNTTPM--LLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRL 81 (233)
T ss_pred EEEECce----EEEEcCC---CceEEEEEEeCCCCcE--EEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEE
Confidence 4667777 7777753 4678999999998764 4443 1 111 499999999999999999999
Q ss_pred EeeccCCCCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCC-CcceeEEeEEEEeCCC
Q 028956 78 FKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE 138 (201)
Q Consensus 78 ~l~~e~p~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~-~~i~e~kLrV~f~~p~ 138 (201)
.+ ... ...|.|. ---|-+....+++..+... +.... ......+|++-|-+..
T Consensus 82 ~~---~~~-~~LP~DR--ESlf~lnv~~IP~~~~~~~---~~~~~l~iair~rIKlFyRP~~ 134 (233)
T PRK15246 82 LL---SSR-QQLATDR--ESLFWLNIYQIPPVTQDIK---NHPRKLVLPLRLRLKILIRPTG 134 (233)
T ss_pred EE---CCC-CCCCCCc--eEEEEEEEEEcCCCCcccc---cccceEEEEeeeEEEEEECCcc
Confidence 97 221 1123322 1236666666665322100 00001 1223667777776443
No 21
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=78.28 E-value=7.3 Score=29.10 Aligned_cols=51 Identities=25% Similarity=0.488 Sum_probs=35.7
Q ss_pred CCceEEEEEEEcCCCCeEE-EEEeeCCCcceeec--CC-ceeeCCCCeEEEEEEe
Q 028956 29 TFPVRSAIKIKNTSKSHVA-FKFQTTAPKSCFMR--PP-GAILAPGESLIATVFK 79 (201)
Q Consensus 29 ~k~~~~~LtLtN~S~~~VA-FKVKTTaP~~Y~Vr--P~-~GiI~Pg~s~~I~V~l 79 (201)
+....-.++..|.+..++. |.++-..|+.|.++ |. ...|+|+..++-.+.+
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v 77 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKV 77 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEE
Confidence 4567889999999988875 88777667765554 65 5599999988877776
No 22
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=76.56 E-value=10 Score=28.12 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=38.4
Q ss_pred CCCceEEEEEEEcCCCCe--------EEEEEeeCCCc--ceeecCCceeeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSKSH--------VAFKFQTTAPK--SCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~~~--------VAFKVKTTaP~--~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
-|+.....++++|+++.+ .|+-|--|.-- .+..+-..+.|.||++..+.+.+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 578899999999999876 55555544332 25677889999999999999998
No 23
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=76.38 E-value=20 Score=27.86 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=40.8
Q ss_pred EEEccCCCCceEEEEEEEcCCCCeEEEEEe-----eCCCcc--e------------------eecCCceeeCCCCeEEEE
Q 028956 22 LILPISSTFPVRSAIKIKNTSKSHVAFKFQ-----TTAPKS--C------------------FMRPPGAILAPGESLIAT 76 (201)
Q Consensus 22 L~F~~~~~k~~~~~LtLtN~S~~~VAFKVK-----TTaP~~--Y------------------~VrP~~GiI~Pg~s~~I~ 76 (201)
..+...+++..+-.++|+|.|++.+.|+|. |+..+. | .=.|..-.|+|+++..|.
T Consensus 19 FdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~ 98 (121)
T PF06030_consen 19 FDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVT 98 (121)
T ss_pred EEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEE
Confidence 444456777888999999999999999985 333331 2 112333578889988888
Q ss_pred EEe
Q 028956 77 VFK 79 (201)
Q Consensus 77 V~l 79 (201)
+++
T Consensus 99 ~~i 101 (121)
T PF06030_consen 99 FTI 101 (121)
T ss_pred EEE
Confidence 876
No 24
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=76.18 E-value=4.6 Score=28.39 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCCceEEEEEEEcCCCCeE-EEEEeeCCCccee--ecCCce-eeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSKSHV-AFKFQTTAPKSCF--MRPPGA-ILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~~~V-AFKVKTTaP~~Y~--VrP~~G-iI~Pg~s~~I~V~l 79 (201)
.|...+-.++++|.++.++ ..++.-..|.-.. ..|... .|.||++..+++.+
T Consensus 3 ~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V 58 (78)
T PF10633_consen 3 PGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTV 58 (78)
T ss_dssp TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEE
Confidence 4566788999999987543 3555555688777 445443 79999999999887
No 25
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=74.34 E-value=44 Score=28.63 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=45.6
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCC-eE-EEEEeeCCC----cceeecCCceeeCCCCeEEEEEEe
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKS-HV-AFKFQTTAP----KSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~-~V-AFKVKTTaP----~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.|.++|. .+.|... ....+++|+|.+++ ++ .+..-.... .-|.|-|+.-.|+||+...|.|..
T Consensus 22 gv~l~~T----RvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~ 90 (228)
T PRK15208 22 GVALSST----RVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVN 90 (228)
T ss_pred cEEeCce----EEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEE
Confidence 5677777 6777764 36789999999863 33 333221111 129999999999999999999987
No 26
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=73.95 E-value=46 Score=29.06 Aligned_cols=111 Identities=7% Similarity=0.058 Sum_probs=66.4
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCC-CeEEEEEeeC--C-C----cceeecCCceeeCCCCeEEEEEEeec
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSK-SHVAFKFQTT--A-P----KSCFMRPPGAILAPGESLIATVFKFV 81 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~-~~VAFKVKTT--a-P----~~Y~VrP~~GiI~Pg~s~~I~V~l~~ 81 (201)
.|.+++. .+.|+.. ....+++|+|.++ .++.--.-.. . . .-|.|-|+.-.|+||+...+.|..
T Consensus 38 gv~l~~T----RvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~-- 108 (243)
T PRK15290 38 GVVIGGT----RVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIH-- 108 (243)
T ss_pred eEEECce----EEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEE--
Confidence 4667777 7777753 4677999999986 4555444332 1 1 139999999999999999999997
Q ss_pred cCCCCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeCC
Q 028956 82 ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 137 (201)
Q Consensus 82 e~p~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~p 137 (201)
.... ..|.|. ---|-+....+++..+. .+ ++ .=+.....++++-|-+.
T Consensus 109 -~~~~-~LP~DR--ESlf~lnv~eIPp~~~~-~~--~n-~L~iair~rIKlFyRP~ 156 (243)
T PRK15290 109 -TKGV-SLPDDR--ESVFWLNIKNIPPSASN-KA--TN-SLEIAVKTRIKLFWRPA 156 (243)
T ss_pred -cCCC-CCCCCe--eEEEEEEEEEcCCCCcc-cc--cc-eEEEEEEEeeeEEEecc
Confidence 2211 123332 23366666666653211 00 00 11223466677777644
No 27
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=73.91 E-value=8.9 Score=35.82 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=38.3
Q ss_pred CCCceEEEEEEEcCCCCeEEEEEeeCCCc-------ceeecCCce--------------eeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSKSHVAFKFQTTAPK-------SCFMRPPGA--------------ILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~~~VAFKVKTTaP~-------~Y~VrP~~G--------------iI~Pg~s~~I~V~l 79 (201)
+++..+-++++||.++++|-.+==+|+.- .|...|++. -|.||||.+|.|..
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEA 352 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEE
Confidence 57788999999999999998774444443 333333332 38999999999998
No 28
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=73.60 E-value=5.6 Score=34.77 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=44.6
Q ss_pred cccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEEE
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
+|+-|=|..| -.|.++.+.|.|....+......|+++|+|..++.|- ++....++ .+....|+|.|+++..+.+
T Consensus 145 IKLFyRP~~L-~~~~~~~~~L~~~~~~~~~~~~~l~v~Nptpyyitl~~l~~~~~~~-~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 145 IKLFYRPDGL-GKPDNLAKKLQIKTVNKGSGKSGIVIVNPQPWFASLSNLNVKVNGA-SYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEEccccC-CChhHhhhceEEEEeeccCCCCEEEEECCCceEEEeeeeeeccCCe-ecCCCCceECCCCccEEEc
Confidence 4566667666 4554444567777533111122599999999988775 33211221 1222458999999988764
No 29
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=72.74 E-value=44 Score=28.76 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=45.1
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCC-eEEEEEee---CC----CcceeecCCceeeCCCCeEEEEEEe
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKS-HVAFKFQT---TA----PKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~-~VAFKVKT---Ta----P~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.|.+++. .+.|.... ...+++|+|.++. +.. |++ +. ..-|.|-|+.=-|+||+...|.|..
T Consensus 26 gi~i~~T----RvIy~~~~---~~~si~l~N~~~~~~~L--vQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~ 94 (229)
T PRK15195 26 GIALGAT----RVIYPADA---KQTSLAIRNSHTNERYL--VNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIY 94 (229)
T ss_pred eEEECCe----EEEEeCCC---ceEEEEEEeCCCCccEE--EEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence 4667777 67776543 4589999999864 333 442 11 1249999999999999999999997
No 30
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=71.61 E-value=68 Score=27.87 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=56.5
Q ss_pred ceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeC----------C----CcceeecCCceeeCCCCeEE
Q 028956 9 LHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTT----------A----PKSCFMRPPGAILAPGESLI 74 (201)
Q Consensus 9 ~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTT----------a----P~~Y~VrP~~GiI~Pg~s~~ 74 (201)
-.|.++.. .+.|+.. ....+++|.|.++.+ |=|++. . ..-|.|-|+.-.|+||+...
T Consensus 22 Agi~l~~T----RvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~ 92 (234)
T PRK15192 22 AGVVIGGT----RFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENS 92 (234)
T ss_pred eeEEeCce----EEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceE
Confidence 35667766 6777663 467899999999876 555551 1 11399999999999999999
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCeEEEEEEEeCC
Q 028956 75 ATVFKFVELPENNEKPMYQKSRDKFKIISMKVKA 108 (201)
Q Consensus 75 I~V~l~~e~p~~~e~p~~~~~kDKFlVqs~~v~~ 108 (201)
+.|.. ... ..|.|. ---|-+....+++
T Consensus 93 lRI~~---~~~--~LP~DR--ESlf~lnv~~IPp 119 (234)
T PRK15192 93 MRVVY---TGA--PLPADR--ESLFTLSIAAIPS 119 (234)
T ss_pred EEEEE---CCC--CCCCcc--eEEEEEEEEecCC
Confidence 99997 221 123332 2335666666665
No 31
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=70.69 E-value=65 Score=28.02 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=55.1
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCC-CeEEEEEee-C-C--C-cceeecCCceeeCCCCeEEEEEEeeccC
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSK-SHVAFKFQT-T-A--P-KSCFMRPPGAILAPGESLIATVFKFVEL 83 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~-~~VAFKVKT-T-a--P-~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~ 83 (201)
.+.+++. .+.|... ....+++|.|.++ .++-=..-. . . + .-|.|-|+.-.|+||+...|.|.. .
T Consensus 17 ~v~l~~T----RvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~---~ 86 (239)
T PRK15254 17 AVNVDRT----RIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQ---V 86 (239)
T ss_pred eEEECce----EEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEE---c
Confidence 4667776 6777753 4678999999986 354333211 1 1 1 249999999999999999999987 2
Q ss_pred CC-CCCCCCCCCCCCeEEEEEEEeCC
Q 028956 84 PE-NNEKPMYQKSRDKFKIISMKVKA 108 (201)
Q Consensus 84 p~-~~e~p~~~~~kDKFlVqs~~v~~ 108 (201)
.. ....|.|. -.-|-+....+++
T Consensus 87 ~~~~~~lP~DR--ESlf~lnv~~IP~ 110 (239)
T PRK15254 87 RGLTDKLPQDR--ETLFWFNVRGVPP 110 (239)
T ss_pred ccCCCCCCCCc--eEEEEEEEEEcCC
Confidence 11 11223332 2335555555655
No 32
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=69.96 E-value=9.2 Score=33.24 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=45.6
Q ss_pred cccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEEE
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
+++-|=|..|.-.|.++.+.|.|....+ .|+++|+|..+|.|- ++-. .+. + ...++|+|.++..+.+
T Consensus 135 iKlFYRP~~L~~~~~~a~~~L~~~~~~~-----~l~v~NpTPyyvtl~~l~v~-~~~--~-~~~~miaPfs~~~~~~ 202 (234)
T PRK15192 135 LKLLYRPEGLAGNPQQAYRHLIWSLTPD-----GATVRNPTPYYVTLFLLRAN-ERA--Q-DNAGVVAPFATRQTDW 202 (234)
T ss_pred eeEEEccccccCChhhhhhheEEEEcCC-----EEEEECCCCcEEEEEeEEEc-Ccc--c-CCCceECCCCccEEec
Confidence 3556777777777766666888886533 299999999999875 2322 222 2 2457899999887764
No 33
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.44 E-value=9.7 Score=32.89 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=47.3
Q ss_pred cccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE--EeeCCCcceeecCCceeeCCCCeEEEEE
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK--FQTTAPKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK--VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
+++-|=|-.|.-.|.++...|.|.... ..|+++|++..++.|- .-+. .++-.. -+.+.|.|+++..+.+
T Consensus 138 iKlf~RP~~l~~~~~~~~~~L~~~~~~-----~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l 208 (235)
T COG3121 138 IKLFYRPAGLAGPPAEAPKKLTWSRSG-----NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPL 208 (235)
T ss_pred eeEEECcccCCCChhHhhheEEEEEcC-----CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeec
Confidence 345566666766665444567776654 6899999999999987 3333 333322 7889999999988443
No 34
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=68.06 E-value=80 Score=27.31 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=64.7
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCC-eEE-EEE-eeCC---CcceeecCCceeeCCCCeEEEEEEeeccC
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKS-HVA-FKF-QTTA---PKSCFMRPPGAILAPGESLIATVFKFVEL 83 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~-~VA-FKV-KTTa---P~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~ 83 (201)
.|.+++. .+.|+.. ....+++|+|.+++ +.. ... .... ..-|.|.|+.--|+||+...+.|.. .
T Consensus 28 gi~l~~T----RvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~---~ 97 (228)
T PRK15188 28 GIALGAT----RVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMY---V 97 (228)
T ss_pred eEEECcE----EEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEE---C
Confidence 4667777 6777664 46789999999864 333 221 1111 1249999999999999999999997 2
Q ss_pred CCCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCC-CcceeEEeEEEEeCCC
Q 028956 84 PENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE 138 (201)
Q Consensus 84 p~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~-~~i~e~kLrV~f~~p~ 138 (201)
.. ..|.|.. --|-+....+++..+.. .+... ......+|++-|-+..
T Consensus 98 ~~--~lP~DRE--Slf~lnv~~IP~~~~~~----~~~n~l~ia~r~~IKLFyRP~~ 145 (228)
T PRK15188 98 GP--SLPTDRE--SVFYLNSKAIPSVDKNK----LTGNSLQIATQSVIKLFIRPKN 145 (228)
T ss_pred CC--CCCCCce--EEEEEEEEecCCCCccc----cccceEEEEEeeeEEEEECCcc
Confidence 21 1233322 33556666666532210 01111 2233666777776443
No 35
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=67.81 E-value=11 Score=32.68 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=46.1
Q ss_pred cccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeC-CCcceeecCCceeeCCCCeEEEEE
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTT-APKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTT-aP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
+|+-|=|-.|.-.|.++.+.|.|....+. ....|+++|+|..++.|- ++-. .-+.+.+ ..+.|.|+++..+.+
T Consensus 142 IKLFyRP~~l~~~~~~~~~~L~~~~~~~~-~~~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l 216 (246)
T PRK09926 142 IKLFYRPDGLKGNPSEAPLALKWSWAGSE-GKASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKV 216 (246)
T ss_pred EEEEEcCccCCCChhHhhhccEEEEecCC-CeEEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEec
Confidence 35556666666555555567888754332 235699999999988764 3322 2222322 347899999888764
No 36
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=67.40 E-value=25 Score=25.99 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCCceEEEEEEEcCCCCeEE-----EEEeeCCCcceeecC---------CceeeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSKSHVA-----FKFQTTAPKSCFMRP---------PGAILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~~~VA-----FKVKTTaP~~Y~VrP---------~~GiI~Pg~s~~I~V~l 79 (201)
.++-..-.++++|.++.++. |++.+..-..|.... ..+.|.||+++.-.+..
T Consensus 34 g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F 99 (123)
T PF11611_consen 34 GNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVF 99 (123)
T ss_dssp -SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEE
T ss_pred CCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEE
Confidence 34456789999999987775 788876656665332 45899999999999886
No 37
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=67.19 E-value=11 Score=32.75 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=44.7
Q ss_pred ccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEE
Q 028956 3 PVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 3 ~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
++-|=|-.|.-.|.++.+.|.|....+ .|++.|+|..+|.|---.-.-+. + ..++|.|+++..+.+
T Consensus 127 KlFyRP~~L~~~~~~a~~~L~~~~~~~-----~l~v~NpTPyyvtl~~l~~~~~~--~--~~~mi~P~s~~~~~~ 192 (233)
T PRK15246 127 KILIRPTGLKAPTEAEEKKLRFIAKEN-----TIRIVNPTSWYMSLTLTMDNKKS--I--GDIMVAPKTALDVPL 192 (233)
T ss_pred EEEECCcccCCChhhhhhccEEEEcCC-----EEEEECCCCcEEEEEeEEECCcc--c--CcceECCCCccEEEc
Confidence 455667777666666667888885432 39999999999988632222222 2 246899999887753
No 38
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=65.82 E-value=11 Score=32.80 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=45.2
Q ss_pred cccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEE-EEeeCCCcceeecCCceeeCCCCeEEEEE
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAF-KVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
+++-|=|-.|.-.|.++.+.|.|.... ..|+++|+|..++.| .++-. .+ .+ ..+.|.|+++..+.+
T Consensus 149 IKlFyRP~~L~~~~~~a~~~L~~~~~g-----~~l~v~NptPyyvtl~~l~v~-g~--~~--~~~mI~P~s~~~~~~ 215 (243)
T PRK15290 149 IKLFWRPASIRLIPEDAAPKVKWRREG-----RNLIAENPNPIHISVMDVIVD-GH--DV--PLNMIRPFETLTLPL 215 (243)
T ss_pred eeEEEeccccCCChhHhhhhcEEEEcC-----CEEEEECCCcEEEEEEEEeec-Cc--cc--CCceECCCCceEEEc
Confidence 456677777766666555678888432 259999999999987 45432 22 22 247899999987753
No 39
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.47 E-value=89 Score=26.91 Aligned_cols=112 Identities=12% Similarity=0.187 Sum_probs=73.9
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeC-------CCcceeecCCceeeCCCCeEEEEEEeecc
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTT-------APKSCFMRPPGAILAPGESLIATVFKFVE 82 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTT-------aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e 82 (201)
.+.+++. .+.|+.. ....+++|.|.++.++.-.+..- ...-|-|-|+.=.|+||+...|.|.+
T Consensus 28 ~v~i~~T----RiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~--- 97 (235)
T COG3121 28 GVVLGGT----RIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILY--- 97 (235)
T ss_pred eEEecce----EEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEe---
Confidence 4556666 6776665 36789999998889998886543 23359999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCC---CcceeEEeEEEEeCCCCCC
Q 028956 83 LPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD---QTAAEQILRVVFLNPERPE 141 (201)
Q Consensus 83 ~p~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~---~~i~e~kLrV~f~~p~~ps 141 (201)
.+. . .|.|. ..-|-+....++.... +...+ +....++|++-|-++.-..
T Consensus 98 ~~~-~-lP~dr--Eslf~lnv~eIPp~~~------~~~~~n~lq~a~r~riKlf~RP~~l~~ 149 (235)
T COG3121 98 TGN-K-LPADR--ESLFRLNVDEIPPKSK------DDKGPNVLQLALRSRIKLFYRPAGLAG 149 (235)
T ss_pred cCC-C-CCCCc--eeEEEEEeeecCCCCc------ccCCcceEEEEeeeeeeEEECcccCCC
Confidence 332 1 23432 3457777777765431 11111 2334678888777654443
No 40
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=65.12 E-value=32 Score=24.91 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=22.3
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCcceeec-------------------CCceeeCCCCeEEEEEEe
Q 028956 33 RSAIKIKNTSKSHVAFKFQTTAPKSCFMR-------------------PPGAILAPGESLIATVFK 79 (201)
Q Consensus 33 ~~~LtLtN~S~~~VAFKVKTTaP~~Y~Vr-------------------P~~GiI~Pg~s~~I~V~l 79 (201)
.-.|+|+|.++.+|-+.+.|..-=-|.|+ -..=.|+||++....+++
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~ 68 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETW 68 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEE
Confidence 44666777766666665533222222222 223356777777777776
No 41
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=64.58 E-value=75 Score=30.15 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=49.4
Q ss_pred eeCceeEEccCCCceeEEEccCCCC-ceEEEEEEEcCCCCeEEEEEeeCCCcceeec-C-CceeeCCCCeEEEEEEe
Q 028956 6 FLPLHDHFYPNGAVSSLILPISSTF-PVRSAIKIKNTSKSHVAFKFQTTAPKSCFMR-P-PGAILAPGESLIATVFK 79 (201)
Q Consensus 6 ~~p~~L~i~P~~~~~eL~F~~~~~k-~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~Vr-P-~~GiI~Pg~s~~I~V~l 79 (201)
..|+.|.+..+- .-|....+.+. ...-+++|.|.+.++..|.++........+. + +.=.|+||+...+.|++
T Consensus 323 r~~~~~~v~r~r--~~l~~~~~~g~i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v 397 (434)
T TIGR02745 323 REPMDLNVLRDR--NLLYVRNSDGVVENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFL 397 (434)
T ss_pred CCceEEEEEecC--CcceEECCCCcEEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEE
Confidence 457788887773 22444444443 5577999999999888888876554443333 2 23489999999888887
No 42
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=64.39 E-value=66 Score=27.71 Aligned_cols=101 Identities=18% Similarity=0.292 Sum_probs=60.8
Q ss_pred eEEEccCCCCceEEEEEEEcCCCCeEEEEEee---CC-----C----cceeecCCceeeCCCCeEEEEEEeeccCCCCCC
Q 028956 21 SLILPISSTFPVRSAIKIKNTSKSHVAFKFQT---TA-----P----KSCFMRPPGAILAPGESLIATVFKFVELPENNE 88 (201)
Q Consensus 21 eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKT---Ta-----P----~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e 88 (201)
.+.|+.. ....+++|.|.++.+ |=|++ +. | .-|.|.|+.=.|+||+...+.|.. .. . .
T Consensus 26 RvIy~~~---~~~~si~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~---~~-~-~ 95 (226)
T PRK15218 26 RIIYPAQ---KKDITVQLMNDGKRS--SLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKK---LA-N-N 95 (226)
T ss_pred EEEEcCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEE---CC-C-C
Confidence 5666643 467799999999876 55554 11 1 149999999999999999999997 22 1 1
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCC-CcceeEEeEEEEeCC
Q 028956 89 KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNP 137 (201)
Q Consensus 89 ~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~-~~i~e~kLrV~f~~p 137 (201)
.|.|. ---|-+....+++..+.. +.... +.....+|++-|-+.
T Consensus 96 LP~DR--ESlfwlnv~~IPp~~~~~----~~~n~L~iairtrIKLfYRP~ 139 (226)
T PRK15218 96 LPGDR--ESLFYLNVLDIPPNSDEN----KDKNIIKFALQNRIKLIYRPP 139 (226)
T ss_pred CCcce--eEEEEEEEEEcCCCCCCc----CcCcEEEEEeeeEEEEEEccc
Confidence 23332 223666666666532210 01111 223366677767543
No 43
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=63.73 E-value=96 Score=27.24 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=46.7
Q ss_pred eEEEEEEEcCCCCeEEEEEee---CC----CcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCCeEEEEEE
Q 028956 32 VRSAIKIKNTSKSHVAFKFQT---TA----PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISM 104 (201)
Q Consensus 32 ~~~~LtLtN~S~~~VAFKVKT---Ta----P~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e~p~~~~~kDKFlVqs~ 104 (201)
...+++|.|.++.+ |-|++ +. ..-|.|.|+.=.|+||+...+.|.. . +. ..|.|.. --|.+...
T Consensus 56 ~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~---~-~~-~LP~DRE--Slfwlnv~ 126 (246)
T PRK15233 56 PSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIP---T-SN-LFNKNEE--SLYWLCVK 126 (246)
T ss_pred cEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEE---C-CC-CCCcCce--EEEEEEEE
Confidence 67899999987776 55554 11 1249999999999999999999997 2 21 2233321 12666666
Q ss_pred EeCCC
Q 028956 105 KVKAD 109 (201)
Q Consensus 105 ~v~~~ 109 (201)
.+|+.
T Consensus 127 ~IPp~ 131 (246)
T PRK15233 127 GVPPL 131 (246)
T ss_pred EcCCC
Confidence 66653
No 44
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=62.16 E-value=15 Score=31.58 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=44.0
Q ss_pred ccceeCceeEE-ccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEEEE
Q 028956 3 PVRFLPLHDHF-YPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATVF 78 (201)
Q Consensus 3 ~~~~~p~~L~i-~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~ 78 (201)
++-|=|-.|.- .|.++.+.|.|....+ .|+++|+|..++.|- ++... +. +. +.|.|.|+++..+.+-
T Consensus 130 KLFyRP~~L~~~~~~~~~~~L~~~~~~~-----~l~v~NptPyyitl~~l~~~~-~~--~~-~~~mI~P~s~~~~~~~ 198 (226)
T PRK15295 130 KLIYRPPALTKSTPDSQSQQLKWQTAGD-----VITVNNPTPYYMNFASVTLNS-HE--VK-SATFVPPKSSASFKLG 198 (226)
T ss_pred eEEEchhhcCCCChhHhhhccEEEEcCC-----EEEEECCCceEEEEEEEEECC-cc--cC-CCceECCCCccEEEcc
Confidence 44555666654 3454556788885432 499999999999764 54432 22 22 3589999999888643
No 45
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=61.62 E-value=69 Score=27.88 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=50.9
Q ss_pred eEEEccCCCCceEEEEEEEcCCCCeEEEEEee----CC---CcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 028956 21 SLILPISSTFPVRSAIKIKNTSKSHVAFKFQT----TA---PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ 93 (201)
Q Consensus 21 eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKT----Ta---P~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e~p~~~ 93 (201)
.+.|+.. ....+++|.|.++.+ |=|++ .. ..-|.|.|+.=.|+|++...+.|.. .. . ..|.|.
T Consensus 36 RvIy~~~---~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~---~~-~-~LP~DR 105 (237)
T PRK15224 36 RVIYHAG---TAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR---TG-G-DMPTDR 105 (237)
T ss_pred EEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEE---CC-C-CCCCce
Confidence 5665543 467899999998876 66665 11 1239999999999999999999997 22 1 123332
Q ss_pred CCCCeEEEEEEEeCC
Q 028956 94 KSRDKFKIISMKVKA 108 (201)
Q Consensus 94 ~~kDKFlVqs~~v~~ 108 (201)
. --|-+....+++
T Consensus 106 E--SlFwlnv~~IPp 118 (237)
T PRK15224 106 E--TLQWVCIKAVPP 118 (237)
T ss_pred e--EEEEEEEEEcCC
Confidence 2 235555555665
No 46
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=61.56 E-value=15 Score=31.81 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=43.3
Q ss_pred cccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEE
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIA 75 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I 75 (201)
+++-|=|..|.-.|.++.+.|.|....+ .|+++|+|..+|.|-=-+-+-+. + ..++|+|.++..+
T Consensus 137 IKLFyRP~~l~~~~~~a~~~L~~~~~~~-----~l~v~NpTPyyvtl~~l~v~~~~--~--~~~mi~P~s~~~~ 201 (228)
T PRK15188 137 IKLFIRPKNLAEAPAHAPSTLRCRNERG-----QLTITNPSPYYVSMVELYSAGKK--L--PNTMVPPKGAITL 201 (228)
T ss_pred EEEEECCccCCCChhhhhhceEEEEcCC-----EEEEECCCCcEEEEEEEEECCcc--c--CCceECCCCccee
Confidence 3566778788777776667889986533 49999999999987421112222 2 2367888888543
No 47
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=60.75 E-value=17 Score=31.58 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=46.0
Q ss_pred cccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEEE
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
+++-|=|-.|.-.|.++.+.|.|....+ .|+++|+|..++.|- ++-. .+ .+ .+.++|+|.++..+.+
T Consensus 140 iKLFyRP~~L~~~~~~a~~~L~~~~~g~-----~l~v~NpTPyyvtl~~l~~~-~~--~~-~~~~mi~Pfs~~~~~~ 207 (236)
T PRK11385 140 FKLFWRPEGLPGDPLEAYQQLRWTRNSQ-----GVQLTNPTPYYINLIQVSVN-GK--AL-SNAGVVPPKSQRQTSW 207 (236)
T ss_pred EEEEEcccccCCChhhhhhheEEEEcCC-----EEEEECCCCcEEEEEeEEEC-Cc--cc-CCCceECCCCccEEec
Confidence 3556667777777776677899885432 499999999999763 3332 22 22 2356899999887764
No 48
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=60.21 E-value=10 Score=25.82 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=27.4
Q ss_pred EEEEcCCCCeEEEEE-eeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028956 36 IKIKNTSKSHVAFKF-QTTAPKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 36 LtLtN~S~~~VAFKV-KTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
|+++|+|.-+|.|-= +....+.=.--...++|+|+++..+.+.-
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~~ 45 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLPA 45 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETST
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEeccC
Confidence 689999999998864 44433332233444499999998877653
No 49
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=59.58 E-value=1.2e+02 Score=26.53 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=39.7
Q ss_pred eEEEccCCCCceEEEEEEEcCCCC-eEEEEE--eeCCCc----ceeecCCceeeCCCCeEEEEEEe
Q 028956 21 SLILPISSTFPVRSAIKIKNTSKS-HVAFKF--QTTAPK----SCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 21 eL~F~~~~~k~~~~~LtLtN~S~~-~VAFKV--KTTaP~----~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.+.|+.. ....+++|+|.++. ++.=-. .....+ -|.|.|+.-.|+||+...+.|..
T Consensus 33 RVIy~~~---~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~ 95 (250)
T PRK15285 33 RLVFRGE---DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQG 95 (250)
T ss_pred EEEEcCC---CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEE
Confidence 5666643 46789999999864 432222 111111 39999999999999999999996
No 50
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=59.42 E-value=18 Score=31.08 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=43.8
Q ss_pred cccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEEE
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
+|+-|=|-.|.-.+.++.+.|.|.... ..|+++|+|..++.|- ++-. -+ .+. ..|.|.|+++..+.+
T Consensus 131 IKlFyRP~~l~~~~~~~~~~L~~~~~~-----~~l~v~Nptpy~vtl~~l~~~-g~--~~~-~~~mi~P~s~~~~~l 198 (228)
T PRK15208 131 LKLFYRPAGLKGNSMDAWNKLRFTRAG-----NQIKVENPSAFNLTFNQFYAN-GR--DIE-KAGMVPAKGSLNIEL 198 (228)
T ss_pred eeEEEchhhcCCchhhhhhceEEEEeC-----CEEEEECCCccEEEEEEEEEC-Cc--ccC-CCceECCCCccEEEc
Confidence 355566666655555545577887432 2599999999999875 4432 22 222 368999999888764
No 51
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=58.34 E-value=19 Score=30.79 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=43.4
Q ss_pred ccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEEE
Q 028956 3 PVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 3 ~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
++.|=|..|.-.+.++.+.|.|.... ..|+++|+|..++.|- ++-... . + ...|.|.|+++..+.+
T Consensus 134 KLfyRP~~l~~~~~~~~~~L~~~~~~-----~~l~v~Nptpy~vtl~~l~~~~~-~--~-~~~~mv~P~s~~~~~l 200 (227)
T PRK15299 134 KLIYRPKALTQKPEEVADRLTWSRQG-----RTLTVKNPTPYYMNFATLSVGSQ-K--V-KAPRYVAPFGNAQYTL 200 (227)
T ss_pred eEEEcccccCcchhhhhhccEEEEcC-----CEEEEECCCccEEEEEeEEECCc-c--c-CCCceECCCCccEEEc
Confidence 45677777766555455678887432 2599999999888763 333322 1 2 2358999999887764
No 52
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=57.00 E-value=47 Score=31.13 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=36.8
Q ss_pred eEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCccee----------------------ecCCceeeCCCCeEEEEEE
Q 028956 21 SLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCF----------------------MRPPGAILAPGESLIATVF 78 (201)
Q Consensus 21 eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~----------------------VrP~~GiI~Pg~s~~I~V~ 78 (201)
.-.|.- +++..+-.|+++|.++++|-..==+|+.-+|. |.| .+-|.||++.+++|.
T Consensus 255 ~A~Y~v-pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~-~~pI~PGETrtl~V~ 332 (381)
T PF04744_consen 255 DATYRV-PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSD-NSPIAPGETRTLTVE 332 (381)
T ss_dssp EEEEES-SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-EEEEEEE
T ss_pred ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCC-CCCcCCCceEEEEEE
Confidence 345544 47789999999999999998774344443332 233 346899999999999
Q ss_pred ee
Q 028956 79 KF 80 (201)
Q Consensus 79 l~ 80 (201)
.+
T Consensus 333 a~ 334 (381)
T PF04744_consen 333 AQ 334 (381)
T ss_dssp EE
T ss_pred ee
Confidence 84
No 53
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=56.11 E-value=22 Score=30.72 Aligned_cols=69 Identities=16% Similarity=0.039 Sum_probs=44.7
Q ss_pred cccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecC----CceeeCCCCeEEEE
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRP----PGAILAPGESLIAT 76 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP----~~GiI~Pg~s~~I~ 76 (201)
+++-|=|..|.-+|.++.+.|.|....+ .|++.|+|..++.|- ++- ..+...... ..+.|+|.++..+.
T Consensus 131 iKLfyRP~~L~~~~~~~~~~L~~~~~~~-----~l~v~NpTPyyitl~~l~v-~~~~~~~~~~~~~~~~mi~Pfs~~~~~ 204 (229)
T PRK15211 131 VKLIYRPKALKEGRENAEKNLQIIHRGG-----ETYLKNPTPYYFAVTGVKL-NGQPVKLSDRVMNEIAQLAPFSEVSLG 204 (229)
T ss_pred eeeEEcchhcccChhhhhhccEEEEeCC-----EEEEECCCCcEEEeEeEEE-CCeeccccccccccceeECCCCcceEe
Confidence 3556777778777766667888875433 499999999999874 332 222221111 23579999987664
No 54
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=55.06 E-value=1.1e+02 Score=26.61 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=50.6
Q ss_pred eEEEccCCCCceEEEEEEEcCCCCeEEEEEee---CC-----C----cceeecCCceeeCCCCeEEEEEEeeccCCCCCC
Q 028956 21 SLILPISSTFPVRSAIKIKNTSKSHVAFKFQT---TA-----P----KSCFMRPPGAILAPGESLIATVFKFVELPENNE 88 (201)
Q Consensus 21 eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKT---Ta-----P----~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e 88 (201)
.+.|+.. ....+++|.|.++.+ |=|++ .. | .-|.|.|+.=.|+||+...+.|.. .+ . .
T Consensus 41 RvIy~~~---~k~~sv~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~---~~-~-~ 110 (242)
T PRK15253 41 RVIYPAE---KKEVVVQLVNQGEQA--SLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKK---MP-N-S 110 (242)
T ss_pred EEEEeCC---CceEEEEEEcCCCCc--EEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEE---CC-C-C
Confidence 5666643 467799999999875 55554 11 1 149999999999999999999996 22 1 1
Q ss_pred CCCCCCCCCeEEEEEEEeCC
Q 028956 89 KPMYQKSRDKFKIISMKVKA 108 (201)
Q Consensus 89 ~p~~~~~kDKFlVqs~~v~~ 108 (201)
.|.|. ---|-+....+|+
T Consensus 111 LP~DR--ESlfwlnv~~IPp 128 (242)
T PRK15253 111 LPDNK--ESLFYLNVLDIPP 128 (242)
T ss_pred CCcce--eEEEEEEEEEcCC
Confidence 23332 1235566666665
No 55
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=54.93 E-value=30 Score=25.67 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=34.0
Q ss_pred CceEEEEEEEcCCCCeEE-EEEeeCCC-----------------cceeecCCc--eeeCCCCeEEEEEEe
Q 028956 30 FPVRSAIKIKNTSKSHVA-FKFQTTAP-----------------KSCFMRPPG--AILAPGESLIATVFK 79 (201)
Q Consensus 30 k~~~~~LtLtN~S~~~VA-FKVKTTaP-----------------~~Y~VrP~~--GiI~Pg~s~~I~V~l 79 (201)
......|+|+|.++.++. ++|.=+-| ..|.|+|.. +.|+||+++.+-+..
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~ 82 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQA 82 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEE
Confidence 345668899998877652 33332222 358888654 699999999887775
No 56
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=54.72 E-value=29 Score=29.75 Aligned_cols=69 Identities=23% Similarity=0.268 Sum_probs=42.6
Q ss_pred cccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-E-eeC-CCcceeecCCceeeCCCCeEEEEEE
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-F-QTT-APKSCFMRPPGAILAPGESLIATVF 78 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-V-KTT-aP~~Y~VrP~~GiI~Pg~s~~I~V~ 78 (201)
+|+-|-|-.|. .+.++.+.|.|.... ..|+++|++..++-|- + +.. .-+.+.+ ..|.|.|+++..+.+-
T Consensus 129 iklfyRP~~l~-~~~~~~~~l~~~~~~-----~~l~v~N~~p~~i~l~~l~~~~~~g~~~~~--~~~~v~P~s~~~~~l~ 200 (230)
T PRK09918 129 LPVLIQPAALP-VVRDPWKLLVWSISG-----NNLVVSNPSPYVVRLGQQVILLPSGKVVAL--PKPYILPGESLTVAIT 200 (230)
T ss_pred EEEEEeCCCCC-CcccchhccEEEEeC-----CEEEEECCCCEEEEEeccEEEccCCceecc--CCceECCCceEEEEcc
Confidence 45666676665 333333457776542 2499999999888764 2 221 2333333 3489999999888643
No 57
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.13 E-value=69 Score=26.70 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=36.9
Q ss_pred CCCceEEEEEEEcCCCCeEEEEEeeCC----CcceeecC-----CceeeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSKSHVAFKFQTTA----PKSCFMRP-----PGAILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~~~VAFKVKTTa----P~~Y~VrP-----~~GiI~Pg~s~~I~V~l 79 (201)
.++..+..++|.|.++. -||.|+-+. ++.|-+.- ....|+||+++.-.+++
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv 95 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVV 95 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEE
Confidence 47789999999999877 799998776 24444332 13567788877777776
No 58
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=52.67 E-value=1.6e+02 Score=25.89 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=50.0
Q ss_pred eEEEccCCCCceEEEEEEEcCCCC-eEEEEEee---CC-----CcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCC
Q 028956 21 SLILPISSTFPVRSAIKIKNTSKS-HVAFKFQT---TA-----PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 91 (201)
Q Consensus 21 eL~F~~~~~k~~~~~LtLtN~S~~-~VAFKVKT---Ta-----P~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e~p~ 91 (201)
.+.|... ....+|+|+|.++. ++ =|++ .. ..-|.|.|+.-.|+||+...|.|.. .+.....|.
T Consensus 34 RvIy~e~---~~~~sv~v~N~~~~~p~--LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~---~~~~~~LP~ 105 (257)
T PRK15274 34 RVIFNGN---ENSITVTLKNGNATLPY--LAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQP---LPAAASLPQ 105 (257)
T ss_pred EEEEeCC---CceEEEEEEeCCCCCcE--EEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEE---CCCCCCCCC
Confidence 5666643 46789999999865 53 3333 11 1149999999999999999999997 221112233
Q ss_pred CCCCCCeEEEEEEEeCC
Q 028956 92 YQKSRDKFKIISMKVKA 108 (201)
Q Consensus 92 ~~~~kDKFlVqs~~v~~ 108 (201)
|.. --|-+....+|+
T Consensus 106 DRE--SlFwlNv~eIPp 120 (257)
T PRK15274 106 DRE--SLFYFNVREIPP 120 (257)
T ss_pred cee--EEEEEEEEEcCC
Confidence 322 235666666665
No 59
>smart00637 CBD_II CBD_II domain.
Probab=50.91 E-value=62 Score=23.24 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=30.5
Q ss_pred eEEEEEEEcCCCCeE-----EEEEee-------------CCCcceeecCCc--eeeCCCCeEEEEEEe
Q 028956 32 VRSAIKIKNTSKSHV-----AFKFQT-------------TAPKSCFMRPPG--AILAPGESLIATVFK 79 (201)
Q Consensus 32 ~~~~LtLtN~S~~~V-----AFKVKT-------------TaP~~Y~VrP~~--GiI~Pg~s~~I~V~l 79 (201)
....|+|+|.++.++ .|.+-- .....|.++|.. +.|+||+++.+-+..
T Consensus 8 ~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 8 FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 456788888776443 333311 123368888644 799999998876654
No 60
>PHA01327 hypothetical protein
Probab=48.34 E-value=18 Score=23.72 Aligned_cols=14 Identities=43% Similarity=1.037 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHh
Q 028956 180 DEWKERRERYLARQ 193 (201)
Q Consensus 180 ~~~~~~r~~~~~~~ 193 (201)
++|.|||+++-.|.
T Consensus 20 e~wqer~drmkkrh 33 (49)
T PHA01327 20 EEWQERKDRMKKRH 33 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999998753
No 61
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=45.00 E-value=71 Score=22.29 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=34.5
Q ss_pred CCCceEEEEEEEcCCCC-eEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSKS-HVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~~-~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.++..+-.++|+|.+.. .=.|+|+-...+.-.-.-..+-|.||++..+++.+
T Consensus 17 ~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~ 69 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTW 69 (101)
T ss_dssp TTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEE
Confidence 56788999999999764 34567664333333322333788999999999998
No 62
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=44.72 E-value=43 Score=29.23 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=43.2
Q ss_pred cceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEE
Q 028956 4 VRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIAT 76 (201)
Q Consensus 4 ~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~ 76 (201)
+-|=|-.|...+.++.+.|.|....+ .|+++|+|..++.|- ++- ..+ .+....++|+|.++..+.
T Consensus 149 LFYRP~~L~~~~~~~~~~L~~~~~g~-----~l~v~NpTPyyvtl~~l~~-~~~--~~~~~~~mi~Pfs~~~~~ 214 (242)
T PRK15253 149 LIWRPSRIAAVTKDSFQRIGLFRSNK-----TVIMKNDTANWITVTDVKA-GNT--KINDQTIMLPPLSTQNIN 214 (242)
T ss_pred EEEcchhcccchhhhhhceEEEEcCC-----EEEEECCCCcEEEeEeeEE-CCc--ccCCCCceECCCCccEEe
Confidence 34556666666666666888885432 499999999999875 232 222 233345689999988765
No 63
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=43.88 E-value=1.3e+02 Score=24.43 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=38.1
Q ss_pred eEEEccCC----CCceEEEEEEEcCCCCeEE-EEEeeCC-Ccceeec--CCceeeCCCCeEEEEEEe
Q 028956 21 SLILPISS----TFPVRSAIKIKNTSKSHVA-FKFQTTA-PKSCFMR--PPGAILAPGESLIATVFK 79 (201)
Q Consensus 21 eL~F~~~~----~k~~~~~LtLtN~S~~~VA-FKVKTTa-P~~Y~Vr--P~~GiI~Pg~s~~I~V~l 79 (201)
+..|...+ ...+.-.|+++|.++..+. -+|.... +.--+|+ |..+.|+||+++.+.+-.
T Consensus 72 ~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 72 EYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred EEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 45566632 3455678999999997652 3333322 2233444 888999999998877654
No 64
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=42.92 E-value=51 Score=28.40 Aligned_cols=66 Identities=21% Similarity=0.180 Sum_probs=42.6
Q ss_pred cceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEE
Q 028956 4 VRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 4 ~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
+-|=|-.|.-.|.++.+.|.|....+ .|+++|+|..++.|-==. ..+. +....+.|+|.++..+.+
T Consensus 134 LfYRP~~L~~~~~~a~~~L~~~~~~~-----~l~v~NpTPyyitl~~l~-~~~~--~~~~~~mi~Pfs~~~~~~ 199 (226)
T PRK15218 134 LIYRPPGVQKVDKATFSRLQLLRAPG-----SISVKNNSANWITIPEIK-AKSK--VNKETLLLAPWSSQSITT 199 (226)
T ss_pred EEEcccccccChhhhhhccEEEEcCC-----EEEEECCCCcEEEeEeee-cCCc--ccCCcceECCCCccEEEc
Confidence 34556666656665556888875432 499999999999885222 1222 222346899999887753
No 65
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=42.65 E-value=40 Score=29.37 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=40.5
Q ss_pred eeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEE
Q 028956 6 FLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIAT 76 (201)
Q Consensus 6 ~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~ 76 (201)
|=|-.|...|.++.+.|.|....+ .|++.|+|..+|.|- ++. ..+. + .+.++|+|.++..+.
T Consensus 146 YRP~~L~~~~~~a~~~L~~~~~g~-----~l~v~NpTPYyvtl~~l~~-~~~~--~-~~~~miaPfs~~~~~ 208 (237)
T PRK15224 146 FRPDAVKGTPEDVAGNLRWVETGN-----KLKVENPTPFYMNLASVTV-GGKP--I-TGLEYIPPFADKTLN 208 (237)
T ss_pred EchhhcCCChhHhhhccEEEEcCC-----EEEEECCCCcEEEeEeEEE-CCcc--c-CCceeECCCCccEEE
Confidence 445556555655556788875432 499999999999874 333 2222 2 224689999987765
No 66
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=41.45 E-value=1.3e+02 Score=22.16 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCceEEEEEEEcCCCCe--EEEEEeeCCCcceeecCC-----ceeeCCCCeEEEEEEe
Q 028956 29 TFPVRSAIKIKNTSKSH--VAFKFQTTAPKSCFMRPP-----GAILAPGESLIATVFK 79 (201)
Q Consensus 29 ~k~~~~~LtLtN~S~~~--VAFKVKTTaP~~Y~VrP~-----~GiI~Pg~s~~I~V~l 79 (201)
++.....+.|+|.++.+ +.||+-==..+-+.|.|. .=+|.++++..|.-+-
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~a 80 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAVA 80 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE-
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEEC
Confidence 66789999999999765 788886556666777766 3366677776666553
No 67
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=40.39 E-value=53 Score=28.30 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=40.3
Q ss_pred ccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEE
Q 028956 3 PVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIAT 76 (201)
Q Consensus 3 ~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~ 76 (201)
|+-|=|-.|.-.|.++...|.|.... ..|+++|+|..++.|. ++-. -+ .+.+ +.|.|+++..+.
T Consensus 137 KlFyRP~~l~~~~~~~~~~L~~~~~~-----~~L~v~NptPy~vtl~~l~v~-~~--~i~~--~mv~P~s~~~~~ 201 (229)
T PRK15195 137 KLFVRPINLQELPEEAPDTLKFSRSG-----NHLKVHNPSPYYVTLVNLQVG-SQ--KLGN--AMIAPKVNSQIP 201 (229)
T ss_pred EEEEcccccCCChhhhhhccEEEEcC-----CEEEEECCCceEEEEEEEEEC-Cc--ccCc--eEECCCCceEEE
Confidence 44555655655554444577787432 2599999999999885 3332 22 2322 478898887775
No 68
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=40.26 E-value=40 Score=22.78 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=13.2
Q ss_pred eEEEEEEEcCCCCeEEEEE
Q 028956 32 VRSAIKIKNTSKSHVAFKF 50 (201)
Q Consensus 32 ~~~~LtLtN~S~~~VAFKV 50 (201)
....-++...+...||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 4455556666678999996
No 69
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=39.81 E-value=1.5e+02 Score=21.64 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=31.2
Q ss_pred eEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028956 11 DHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 11 L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
..++|+ ++..+. | ..-.|+++|.++..-.|-+.. +.+ ...|.||++..++++-
T Consensus 30 ~~f~P~----~i~v~~--G--~~v~l~~~N~~~~~h~~~i~~-----~~~---~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 30 FGFSPS----TITVKA--G--QPVTLTFTNNDSRPHEFVIPD-----LGI---SKVLPPGETATVTFTP 82 (104)
T ss_dssp EEEES-----EEEEET--T--CEEEEEEEE-SSS-EEEEEGG-----GTE---EEEE-TT-EEEEEEEE
T ss_pred CeEecC----EEEEcC--C--CeEEEEEEECCCCcEEEEECC-----Cce---EEEECCCCEEEEEEcC
Confidence 345666 555433 2 234588999988888887755 111 2689999999999853
No 70
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=38.26 E-value=1.2e+02 Score=22.13 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=11.8
Q ss_pred ceeeCCCCeEEEEEE
Q 028956 64 GAILAPGESLIATVF 78 (201)
Q Consensus 64 ~GiI~Pg~s~~I~V~ 78 (201)
.+.+.||++..+++.
T Consensus 61 ~~~~~pG~t~~~tF~ 75 (99)
T TIGR02656 61 DLLNSPGESYEVTFS 75 (99)
T ss_pred ccccCCCCEEEEEeC
Confidence 467899999888655
No 71
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=37.59 E-value=72 Score=27.76 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=43.0
Q ss_pred cccceeCceeEEccCC-CceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeec--CCceeeCCCCeEEEEE
Q 028956 2 VPVRFLPLHDHFYPNG-AVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMR--PPGAILAPGESLIATV 77 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~-~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~Vr--P~~GiI~Pg~s~~I~V 77 (201)
+++-|=|-.|.-.+.+ +-+.|.|....+ .|+++|+|..+|.|- ++-. ++-.+. ...++|+|.++..+.+
T Consensus 126 iKLFyRP~~L~~~~~~~~~~~L~~~~~g~-----~l~v~NpTPYyitl~~l~~~--~~~~~~~~~~~~mi~Pfs~~~~~~ 198 (239)
T PRK15254 126 LKLFYRPKAIIRSSSDQPERKLTAERNAG-----HLTLRNPTPYYITVAWLGAD--RSHRLSGFREGVMVPPLGSLPLKA 198 (239)
T ss_pred EeEEEccccccCCcccchhhceEEEEeCC-----EEEEECCCceEEEeeeEEec--CcccccccCCCceECCCCceEEec
Confidence 3556667777545442 225788875422 499999999999874 3321 111121 1446899999887765
Q ss_pred E
Q 028956 78 F 78 (201)
Q Consensus 78 ~ 78 (201)
.
T Consensus 199 ~ 199 (239)
T PRK15254 199 V 199 (239)
T ss_pred c
Confidence 3
No 72
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=36.57 E-value=2.9e+02 Score=24.07 Aligned_cols=85 Identities=11% Similarity=0.133 Sum_probs=56.6
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEee---CCC----c-----------ceeecCCceeeCCCC
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQT---TAP----K-----------SCFMRPPGAILAPGE 71 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKT---TaP----~-----------~Y~VrP~~GiI~Pg~ 71 (201)
.|.+.|- .+.+.. +.+....++|+|.++.+..++|.. ++| + .-.+-|+.-+|.||+
T Consensus 17 ~l~V~Pi----~~~i~a--~~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~ 90 (234)
T PRK15308 17 NMLVYPM----AAEIGA--GREEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGT 90 (234)
T ss_pred eEEEEEe----EEEecC--CCcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCC
Confidence 3556666 344332 235678999999999888777652 343 1 366789999999999
Q ss_pred eEEEEEEeeccCCCCCCCCCCCCCCCeEEEEEEEeCCCC
Q 028956 72 SLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV 110 (201)
Q Consensus 72 s~~I~V~l~~e~p~~~e~p~~~~~kDKFlVqs~~v~~~~ 110 (201)
+-.|.+... ++.. .-.-|.|...+++...
T Consensus 91 ~q~IRli~l--g~~~--------kE~~YRl~~~pvp~~~ 119 (234)
T PRK15308 91 TRTVRVISL--QAPE--------REEAWRVYFEPVAELE 119 (234)
T ss_pred eEEEEEEEc--CCCC--------cEEEEEEEEEecCCcc
Confidence 999998862 1211 1344777777776543
No 73
>smart00605 CW CW domain.
Probab=34.77 E-value=71 Score=23.10 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=13.8
Q ss_pred EEEEEcC-CCCeEEEEEeeCCCc
Q 028956 35 AIKIKNT-SKSHVAFKFQTTAPK 56 (201)
Q Consensus 35 ~LtLtN~-S~~~VAFKVKTTaP~ 56 (201)
.++-.+. +...||||+.++.+.
T Consensus 58 ~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 58 TVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEccCCCCcEEEEEEeCCCCC
Confidence 3344444 458899999865444
No 74
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=33.83 E-value=1.6e+02 Score=20.45 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=22.7
Q ss_pred EEEEEcCCCCeE-----EEEEeeCCCcce-eecCCceeeCCCCeEEEEEEe
Q 028956 35 AIKIKNTSKSHV-----AFKFQTTAPKSC-FMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 35 ~LtLtN~S~~~V-----AFKVKTTaP~~Y-~VrP~~GiI~Pg~s~~I~V~l 79 (201)
+|+++|++...+ .+.|.-..-..- ......+.++|+++..+.+.+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v 51 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPV 51 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEE
Confidence 477888887333 233333222222 344555566666666655554
No 75
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=32.79 E-value=21 Score=21.55 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=5.4
Q ss_pred ehhHHHHHH
Q 028956 178 VIDEWKERR 186 (201)
Q Consensus 178 ~~~~~~~~r 186 (201)
.=+|||.+|
T Consensus 18 LN~eWk~lR 26 (30)
T PF11616_consen 18 LNEEWKKLR 26 (30)
T ss_dssp HHHHHHH--
T ss_pred HHHHHHHhc
Confidence 457899998
No 76
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=31.57 E-value=1.5e+02 Score=25.73 Aligned_cols=51 Identities=27% Similarity=0.256 Sum_probs=35.4
Q ss_pred CCceEEEEEEEcCCC---CeEEEEEe--eCCCc-ceeecC---C---ceeeCCCCeEEEEEEe
Q 028956 29 TFPVRSAIKIKNTSK---SHVAFKFQ--TTAPK-SCFMRP---P---GAILAPGESLIATVFK 79 (201)
Q Consensus 29 ~k~~~~~LtLtN~S~---~~VAFKVK--TTaP~-~Y~VrP---~---~GiI~Pg~s~~I~V~l 79 (201)
|...+|.|-+.|.+. ..|.+||- |.+-. +...-+ . .+-|+||++++..|.+
T Consensus 13 GEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~ 75 (249)
T PF06159_consen 13 GETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSH 75 (249)
T ss_pred cCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEE
Confidence 557899999999987 45689984 54331 332222 2 3469999999987775
No 77
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=29.69 E-value=62 Score=27.32 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.6
Q ss_pred CeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEee
Q 028956 44 SHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKF 80 (201)
Q Consensus 44 ~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~ 80 (201)
++|+||+ |....|+||+++++.+..+
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Yy 141 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVYY 141 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEEE
Confidence 6777776 8889999999999999876
No 78
>PF13205 Big_5: Bacterial Ig-like domain
Probab=29.23 E-value=2.1e+02 Score=20.28 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=34.3
Q ss_pred eEEEccCCC-CceEEEEEEEc--CCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028956 21 SLILPISST-FPVRSAIKIKN--TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 21 eL~F~~~~~-k~~~~~LtLtN--~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.|.|.-+-. ......+.+.+ ....+|.+. ....+.+.+.|. +-|.+|.+..|+|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 344544432 23445566654 334555555 334488899998 557889999998864
No 79
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=28.00 E-value=44 Score=21.44 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhh
Q 028956 181 EWKERRERYLARQQV 195 (201)
Q Consensus 181 ~~~~~r~~~~~~~~~ 195 (201)
.=.|||+++|++|-.
T Consensus 15 ~Q~eRR~~~Le~QK~ 29 (40)
T PF11538_consen 15 DQEERRREFLERQKN 29 (40)
T ss_dssp SHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHH
Confidence 457999999998753
No 80
>PRK02710 plastocyanin; Provisional
Probab=27.81 E-value=2.2e+02 Score=21.59 Aligned_cols=15 Identities=40% Similarity=0.446 Sum_probs=11.4
Q ss_pred eeeCCCCeEEEEEEe
Q 028956 65 AILAPGESLIATVFK 79 (201)
Q Consensus 65 GiI~Pg~s~~I~V~l 79 (201)
+.+.||++..+++.-
T Consensus 82 ~~~~pg~t~~~tF~~ 96 (119)
T PRK02710 82 LAFAPGESWEETFSE 96 (119)
T ss_pred cccCCCCEEEEEecC
Confidence 468999998877663
No 81
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=25.51 E-value=1.8e+02 Score=23.94 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=30.7
Q ss_pred eeEEEccCCCC-ceEEEEEEEcC---CCCeEEEEEee------CCCcceeecCCc
Q 028956 20 SSLILPISSTF-PVRSAIKIKNT---SKSHVAFKFQT------TAPKSCFMRPPG 64 (201)
Q Consensus 20 ~eL~F~~~~~k-~~~~~LtLtN~---S~~~VAFKVKT------TaP~~Y~VrP~~ 64 (201)
+-|.|...+|- -..|.++|.-- ....|+|++|- ..+..+|+||+-
T Consensus 100 ~~Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 100 KLLRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred eeEEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 35667666553 55788988743 24669999983 345668888874
No 82
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=25.26 E-value=2.6e+02 Score=23.30 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=47.0
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCCeEEEEEEEeCCCC
Q 028956 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV 110 (201)
Q Consensus 32 ~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e~p~~~~~kDKFlVqs~~v~~~~ 110 (201)
.+-..-|.|.|.-.+-|=.-+...+.|.+| +.|.|+|+..+-|.-.- ... . ..-.+.-||.+.-..+.
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~---~~e-----L--N~~~~v~vQ~iAyK~~K 85 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFS---KEE-----L--NDLERVAVQLIAYKKDK 85 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE----GGG-----G--GG-SSEEEEEEEE-SSS
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcC---HHH-----h--hccceeEEEEEEEcCCC
Confidence 455778899999999999998888889888 78999999998887553 111 1 23466778888876654
No 83
>PF12086 DUF3563: Protein of unknown function (DUF3563); InterPro: IPR021946 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 50 amino acids in length. This protein has conserved AYL and DLE sequence motifs.
Probab=23.11 E-value=56 Score=22.78 Aligned_cols=13 Identities=54% Similarity=0.782 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHh
Q 028956 181 EWKERRERYLARQ 193 (201)
Q Consensus 181 ~~~~~r~~~~~~~ 193 (201)
.-++|||.|||+-
T Consensus 18 ~~~~r~eaYLA~s 30 (59)
T PF12086_consen 18 SERERREAYLAQS 30 (59)
T ss_pred HHHHHHHHHHHhc
Confidence 3478999999963
No 84
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=23.07 E-value=2e+02 Score=20.89 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.7
Q ss_pred CceeeCCCCeEEEEEE
Q 028956 63 PGAILAPGESLIATVF 78 (201)
Q Consensus 63 ~~GiI~Pg~s~~I~V~ 78 (201)
...++.||++..++++
T Consensus 60 ~~~~~~~G~~~~~tF~ 75 (99)
T PF00127_consen 60 SSPLLAPGETYSVTFT 75 (99)
T ss_dssp EEEEBSTTEEEEEEEE
T ss_pred cceecCCCCEEEEEeC
Confidence 5779999999888877
No 85
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=22.14 E-value=2.3e+02 Score=24.82 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=37.4
Q ss_pred eeCceeEEccCCC--ceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCc-ceeecCCceeeCCCCeEEEEE
Q 028956 6 FLPLHDHFYPNGA--VSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPK-SCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 6 ~~p~~L~i~P~~~--~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~-~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
|=|-.|.-.+.+. ...|.|....+ .|++.|+|..+|.|- ++-+..+ .+ .....+.|+|.++..+.+
T Consensus 139 YRP~~L~~~~~~~~~~~~l~~~~~g~-----~l~i~NPTPyyvtl~~l~~~~~~~~~-~~~~~~mi~Pfs~~~~~~ 208 (250)
T PRK15285 139 YRPQALSKIDMQHPWQYKITLQRQGN-----GYQVSNPTGYYVVLSNASNRMDGTPA-RGFSPLVIAPKSNVTLGG 208 (250)
T ss_pred ECcccccCChhhhhhhceEEEEEeCC-----EEEEECCCCcEEEeeheeeccCCeec-ccCCCceECCCCccEEEc
Confidence 4455554333321 12466654322 499999999999884 2211222 22 111446899999988754
No 86
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=22.05 E-value=1e+02 Score=27.04 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=37.3
Q ss_pred eeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEE
Q 028956 6 FLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLI 74 (201)
Q Consensus 6 ~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~ 74 (201)
|=|-.|.-.|.++.+.|.|....+ .|+++|+|..++.|.==+-..+. +.-..+.|+|.++..
T Consensus 160 YRP~~L~~~~~~a~~kL~~~~~g~-----~l~i~NPTPYyitl~~l~v~~~~--i~~~~~mIaPfs~~~ 221 (246)
T PRK15233 160 YRPKTIDLTTMEIADKLKLERKGN-----SIVIKNPTSSYVNIANIKSGNLS--FNIPNGYIEPFGYAQ 221 (246)
T ss_pred EchhhcCCChhhhhhccEEEEcCC-----EEEEECCCCcEEEeEeEEECCcc--cCCCCceECCCCccc
Confidence 445555555655556788875432 49999999999987521112222 221345788887775
No 87
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=21.07 E-value=2.5e+02 Score=21.70 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=30.0
Q ss_pred CceEEEEEEEcCCCCeEEE---EE------------eeCCCcceeecC--CceeeCCCCeEEEEEEe
Q 028956 30 FPVRSAIKIKNTSKSHVAF---KF------------QTTAPKSCFMRP--PGAILAPGESLIATVFK 79 (201)
Q Consensus 30 k~~~~~LtLtN~S~~~VAF---KV------------KTTaP~~Y~VrP--~~GiI~Pg~s~~I~V~l 79 (201)
....-..+|.|.++.+++| ++ ++-.|..|...+ +..-|.||+++.+.+.+
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~ 134 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRL 134 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEe
Confidence 3445555666666655443 11 122355555544 34459999999999997
No 88
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=20.91 E-value=3.1e+02 Score=19.28 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=13.9
Q ss_pred EEEEEEEcCCCCeE-EEEEeeC
Q 028956 33 RSAIKIKNTSKSHV-AFKFQTT 53 (201)
Q Consensus 33 ~~~LtLtN~S~~~V-AFKVKTT 53 (201)
.-.++|+|.+..+| -+++.+.
T Consensus 20 qy~v~I~N~~~~~I~~~~i~~~ 41 (80)
T PF09478_consen 20 QYDVTITNNGSKPIKSLKISID 41 (80)
T ss_pred EEEEEEEECCCCeEEEEEEEEC
Confidence 45789999998666 3444433
No 89
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=20.69 E-value=1.2e+02 Score=23.18 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=19.5
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCCcc
Q 028956 32 VRSAIKIKNTSKSHVAFKFQTTAPKS 57 (201)
Q Consensus 32 ~~~~LtLtN~S~~~VAFKVKTTaP~~ 57 (201)
-.-.|++.+-...-+-||||.++|-+
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~Lk 44 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLK 44 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHH
Confidence 34567777855677899999988854
No 90
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=20.46 E-value=51 Score=23.62 Aligned_cols=22 Identities=41% Similarity=0.737 Sum_probs=15.3
Q ss_pred CCCCCCceee--eeeehhHHHHHHH
Q 028956 165 PEDTGPRIIG--EGLVIDEWKERRE 187 (201)
Q Consensus 165 ~~~~~~~~~~--~~~~~~~~~~~r~ 187 (201)
+.-.|+++++ |. .||+|.++|-
T Consensus 42 pvklG~r~v~W~~S-EI~~Wi~~~~ 65 (70)
T COG3311 42 PVKLGGRSVAWPES-EIDEWIASRK 65 (70)
T ss_pred CeecCcccccccHH-HHHHHHHHHH
Confidence 3445666554 55 7999999885
No 91
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=20.41 E-value=2.3e+02 Score=25.00 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=37.9
Q ss_pred ceeCceeEEccCC---CceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcc-eeecCCceeeCCCCeEEEEE
Q 028956 5 RFLPLHDHFYPNG---AVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKS-CFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 5 ~~~p~~L~i~P~~---~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~-Y~VrP~~GiI~Pg~s~~I~V 77 (201)
-|=|-.|...|.+ ....|.|....+ .|+++|+|..+|.|. ++-...+. ..+ ..++|+|.++..+.+
T Consensus 139 FYRP~~L~~~~~~~~~~~~~l~~~~~g~-----~l~v~NpTPYyvtl~~i~~~~~~~~~~~--~~~mi~Pfs~~~~~l 209 (257)
T PRK15274 139 FYRPVAVARQVDKTHPWQTKLTLTYQGD-----GVIFDNPTPFYLVISNAGSKENETASGF--KNLLIAPREKVTSPI 209 (257)
T ss_pred EEcccccCCCchhcchhhceEEEEEeCC-----EEEEECCCCcEEEeeeeEeccCcccccC--CCceECCCCccEEec
Confidence 3445556444442 123566654322 499999999999885 22211111 011 346899999877754
Done!