Query 028956
Match_columns 201
No_of_seqs 148 out of 594
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 2.7E-35 9.2E-40 235.5 17.3 126 8-141 12-137 (147)
2 1z9l_A Vesicle-associated memb 100.0 5.6E-35 1.9E-39 228.1 17.1 120 8-135 8-127 (128)
3 1wic_A Hypothetical protein ri 100.0 3.6E-35 1.2E-39 236.5 11.3 127 9-146 17-148 (152)
4 1msp_A MSP, major sperm protei 100.0 8.2E-31 2.8E-35 204.9 15.8 122 5-135 3-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 1.7E-29 5.9E-34 193.5 13.8 106 9-133 1-106 (109)
6 1m1s_A WR4; structural genomic 100.0 3.6E-28 1.2E-32 188.3 15.2 106 9-133 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.6 3.3E-07 1.1E-11 69.6 9.9 89 2-103 15-104 (122)
8 3qbt_B Inositol polyphosphate 98.1 2E-05 6.9E-10 61.7 9.7 68 10-81 26-100 (140)
9 2e6j_A Hydin protein; PAPD, st 98.0 2.1E-05 7.3E-10 57.9 8.3 69 7-79 6-78 (112)
10 3qis_A Inositol polyphosphate 97.6 0.00027 9.1E-09 63.2 9.7 68 10-81 29-103 (366)
11 2qsv_A Uncharacterized protein 96.4 0.016 5.3E-07 47.8 9.2 65 10-79 2-67 (220)
12 2qsv_A Uncharacterized protein 95.4 0.069 2.4E-06 43.9 8.8 64 10-79 119-183 (220)
13 3q48_A Chaperone CUPB2; IG fol 88.9 7.2 0.00025 32.9 12.3 110 10-138 29-148 (257)
14 2xg5_A PAPD, chaperone protein 85.2 9.2 0.00032 31.4 10.7 109 11-137 2-118 (218)
15 2co7_B SAFB chaperone, putativ 84.9 8.4 0.00029 31.7 10.3 85 10-108 13-102 (221)
16 2r39_A FIXG-related protein; s 80.8 8.7 0.0003 28.1 8.0 71 7-79 9-81 (118)
17 4djm_A DRAB; chaperone, PILI; 80.1 14 0.00048 30.8 10.0 86 9-108 22-112 (239)
18 1yew_A Particulate methane mon 78.1 12 0.0004 33.7 9.2 67 9-80 248-335 (382)
19 3rfr_A PMOB; membrane, oxidore 77.2 6.4 0.00022 35.8 7.3 57 21-80 290-367 (419)
20 1klf_A FIMC chaperone, chapero 77.1 24 0.00083 28.5 10.3 111 11-138 2-119 (205)
21 3idu_A Uncharacterized protein 71.7 11 0.00036 28.6 6.4 51 28-79 31-82 (127)
22 3mnm_A ADP-ribosylation factor 70.1 21 0.00071 26.7 7.7 50 29-78 30-85 (123)
23 3zy7_A AP-1 complex subunit ga 68.8 9.4 0.00032 28.5 5.5 66 32-105 31-102 (122)
24 1klf_A FIMC chaperone, chapero 68.2 6.9 0.00024 31.8 5.0 65 3-76 112-176 (205)
25 1l4i_A SFAE protein; periplasm 66.7 49 0.0017 26.6 13.2 112 11-139 2-120 (206)
26 4ay0_A Chaperone protein CAF1M 66.7 4.1 0.00014 33.6 3.3 67 2-77 121-187 (218)
27 3gfu_C Chaperone protein FAEE; 66.3 51 0.0018 27.2 10.0 105 11-136 2-113 (224)
28 4ay0_A Chaperone protein CAF1M 63.2 60 0.0021 26.5 11.3 108 10-137 13-128 (218)
29 1l4i_A SFAE protein; periplasm 57.4 7.8 0.00027 31.5 3.4 65 3-76 112-176 (206)
30 4djm_A DRAB; chaperone, PILI; 52.2 3.7 0.00013 34.4 0.6 64 4-76 145-209 (239)
31 3e38_A Two-domain protein cont 50.0 25 0.00084 30.8 5.6 44 34-79 270-313 (343)
32 1iu1_A Gamma1-adaptin; coated 48.7 21 0.00073 27.5 4.5 40 32-71 55-98 (146)
33 2xzz_A Protein-glutamine gamma 48.3 59 0.002 23.4 6.6 48 28-79 18-71 (102)
34 2xg5_A PAPD, chaperone protein 47.2 19 0.00067 29.4 4.2 70 2-76 111-182 (218)
35 2co7_B SAFB chaperone, putativ 47.1 4.8 0.00017 33.2 0.5 66 3-77 127-193 (221)
36 3q48_A Chaperone CUPB2; IG fol 41.6 13 0.00046 31.3 2.4 72 3-77 141-216 (257)
37 3gfu_C Chaperone protein FAEE; 41.0 11 0.00036 31.4 1.6 68 3-74 108-180 (224)
38 2huh_A Putative DNA mismatch r 38.0 89 0.003 24.4 6.5 68 32-110 28-95 (147)
39 2g30_A AP-2 complex subunit be 37.2 65 0.0022 27.0 6.0 51 29-80 54-110 (258)
40 2e9g_A AP-1 complex subunit ga 36.3 1.3E+02 0.0045 22.3 7.2 41 32-72 40-84 (131)
41 3vta_A Cucumisin; subtilisin-l 36.1 1.3E+02 0.0044 28.0 8.5 49 31-79 538-589 (621)
42 3i6s_A Subtilisin-like proteas 35.1 1.4E+02 0.0048 28.1 8.6 48 32-79 560-610 (649)
43 1c7s_A Beta-N-acetylhexosamini 34.4 53 0.0018 32.5 5.7 48 32-79 40-109 (858)
44 1gyu_A Adapter-related protein 34.4 1.5E+02 0.0051 22.4 8.2 41 32-72 49-93 (140)
45 1xi4_J LCA, clathrin light cha 33.9 21 0.00073 24.5 2.0 19 175-193 7-25 (70)
46 3zy7_A AP-1 complex subunit ga 33.8 36 0.0012 25.3 3.5 42 9-53 58-99 (122)
47 3hn9_A Lamin-B1; structural ge 32.9 59 0.002 24.2 4.6 42 34-76 25-72 (123)
48 2kut_A Uncharacterized protein 32.9 68 0.0023 24.0 4.9 51 28-79 14-71 (122)
49 1wm3_A Ubiquitin-like protein 30.9 45 0.0015 22.0 3.3 21 35-55 3-23 (72)
50 3o0l_A Uncharacterized protein 28.5 1.3E+02 0.0045 21.9 5.8 52 28-79 36-94 (112)
51 1f5f_A SHBG, sex hormone-bindi 28.3 82 0.0028 24.5 5.0 47 7-57 5-53 (205)
52 4hci_A Cupredoxin 1; structura 27.9 1.5E+02 0.005 20.2 6.2 38 34-79 38-75 (100)
53 1yyc_A LEA protein, putative l 27.8 1.6E+02 0.0056 23.1 6.7 50 30-79 62-117 (174)
54 1xo8_A AT1G01470; structural g 27.7 1.1E+02 0.0037 23.4 5.4 49 31-79 40-94 (151)
55 4gio_A Putative lipoprotein; u 27.6 1.4E+02 0.0048 21.6 5.8 51 29-79 35-91 (107)
56 2iaa_C Azurin; quinoprotein, t 27.3 90 0.0031 23.2 4.8 16 64-79 83-98 (128)
57 3ndz_E Endoglucanase D; cellot 26.6 1.3E+02 0.0044 21.8 5.4 50 30-79 15-85 (107)
58 2io0_B Small ubiquitin-related 25.3 64 0.0022 22.6 3.4 23 33-55 5-27 (91)
59 1gyu_A Adapter-related protein 24.4 65 0.0022 24.5 3.5 42 9-53 76-117 (140)
60 1id2_A Amicyanin; beta barrel, 24.0 1.1E+02 0.0038 21.3 4.6 14 64-77 70-83 (106)
61 2e9g_A AP-1 complex subunit ga 24.0 56 0.0019 24.5 3.0 42 9-53 67-108 (131)
62 1bxv_A Plastocyanin; copper pr 23.9 1.6E+02 0.0053 19.3 5.9 14 64-77 53-66 (91)
63 2ccw_A Azurin II, AZN-2; elect 23.5 1E+02 0.0034 22.9 4.4 16 64-79 84-99 (129)
64 3isy_A Bsupi, intracellular pr 23.2 1.5E+02 0.005 22.1 5.2 25 28-52 16-40 (120)
65 4fxk_B Complement C4-A alpha c 23.1 1.7E+02 0.0059 27.6 6.9 52 28-79 166-222 (767)
66 3c75_A Amicyanin; copper prote 22.9 1.3E+02 0.0046 21.9 5.0 14 64-77 96-109 (132)
67 1qhq_A Protein (auracyanin); e 22.3 68 0.0023 23.4 3.2 17 63-79 96-112 (140)
68 1ifr_A Lamin A/C; immunoglobul 22.3 99 0.0034 23.0 4.1 41 35-75 20-66 (121)
69 1kyf_A Alpha-adaptin C; protei 22.0 2.2E+02 0.0075 23.4 6.6 50 30-79 42-98 (247)
70 1b3i_A PETE protein, protein ( 21.4 1.9E+02 0.0064 19.2 5.4 15 63-77 58-72 (97)
71 1p4u_A ADP-ribosylation factor 21.3 2.8E+02 0.0095 21.2 7.3 38 35-72 58-99 (153)
72 2l0d_A Cell surface protein; s 20.9 1.3E+02 0.0045 22.0 4.5 52 28-79 17-69 (114)
73 1kdj_A Plastocyanin; electron 20.7 1.1E+02 0.0037 20.8 3.8 15 63-77 63-77 (102)
74 3jt0_A Lamin-B1; structural ge 20.5 1.9E+02 0.0064 22.2 5.5 40 35-75 39-84 (144)
75 2d07_B Ubiquitin-like protein 20.3 93 0.0032 21.6 3.4 24 32-55 16-39 (93)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=2.7e-35 Score=235.53 Aligned_cols=126 Identities=25% Similarity=0.383 Sum_probs=114.1
Q ss_pred CceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCC
Q 028956 8 PLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENN 87 (201)
Q Consensus 8 p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~ 87 (201)
...|.|+|.+ +|.|.+++++.+++.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+| ++...
T Consensus 12 ~~~L~i~P~~---~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~ 85 (147)
T 2cri_A 12 EQILVLDPPS---DLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDY 85 (147)
T ss_dssp CCCSEEESSS---EEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCC
T ss_pred CCeEEECCCC---eEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcC
Confidence 3579999984 99999999999999999999999999999999999999999999999999999999999 77643
Q ss_pred CCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeCCCCCC
Q 028956 88 EKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 141 (201)
Q Consensus 88 e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~p~~ps 141 (201)
. ++++|+|||+||++.++++.+++.++|++..+..++++||||+|+.|..+.
T Consensus 86 ~--p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~~~ 137 (147)
T 2cri_A 86 D--PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNEND 137 (147)
T ss_dssp C--TTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCCSS
T ss_pred C--ccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCCCc
Confidence 2 457899999999999998877789999999988999999999998665443
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=5.6e-35 Score=228.13 Aligned_cols=120 Identities=25% Similarity=0.376 Sum_probs=110.4
Q ss_pred CceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCC
Q 028956 8 PLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENN 87 (201)
Q Consensus 8 p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~ 87 (201)
...|.|+|.+ +|.|.+++++.+++.|+|+|+|+++||||||||+|++|+|||+.|+|.||++++|.|++ ++...
T Consensus 8 ~~~L~i~P~~---~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~ 81 (128)
T 1z9l_A 8 EQILVLDPPS---DLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDY 81 (128)
T ss_dssp CCCSEEESSS---EEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCC
T ss_pred CCeEEECCCC---eEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcC
Confidence 3579999984 99999999999999999999999999999999999999999999999999999999999 77643
Q ss_pred CCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEe
Q 028956 88 EKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL 135 (201)
Q Consensus 88 e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~ 135 (201)
. ++.+|+|||+||++.++++.+++.++|++.++..++++||||+|.
T Consensus 82 ~--p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 82 D--PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp C--TTCCCCCEEEEEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred C--cccccCCEEEEEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence 2 356899999999999999887789999999988999999999995
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=3.6e-35 Score=236.51 Aligned_cols=127 Identities=21% Similarity=0.270 Sum_probs=112.4
Q ss_pred ceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCC
Q 028956 9 LHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 88 (201)
Q Consensus 9 ~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e 88 (201)
..|.|+|.+ +|.|.++++++++|.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+| ++..
T Consensus 17 ~~L~i~P~~---~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~-- 88 (152)
T 1wic_A 17 PLLHISPAE---ELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGL-- 88 (152)
T ss_dssp SSBCBBSSS---CBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSS--
T ss_pred CeEEECCCC---eEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCcc--
Confidence 469999995 99999999999999999999999999999999999999999999999999999999999 6653
Q ss_pred CCCCCCCCCeEEEEEEEeC--CCC--CChhHhhhccCCCcceeEEeEEEEeC-CCCCCchhHH
Q 028956 89 KPMYQKSRDKFKIISMKVK--ADV--DYVPELFDEQKDQTAAEQILRVVFLN-PERPEPALEK 146 (201)
Q Consensus 89 ~p~~~~~kDKFlVqs~~v~--~~~--d~~~~lwk~~~~~~i~e~kLrV~f~~-p~~ps~~~e~ 146 (201)
..+|+|||+||++.++ ++. +++.++|++..+..++++||||+|++ ++|+|++.+|
T Consensus 89 ---~~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g 148 (152)
T 1wic_A 89 ---TVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSG 148 (152)
T ss_dssp ---CCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCC
T ss_pred ---cCCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCccccC
Confidence 1378999999999998 454 35789999999889999999999984 4666666544
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.97 E-value=8.2e-31 Score=204.90 Aligned_cols=122 Identities=15% Similarity=0.155 Sum_probs=104.0
Q ss_pred ceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCC
Q 028956 5 RFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP 84 (201)
Q Consensus 5 ~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p 84 (201)
+.-|..|.++|.+ +|.|++++++..+|.|+|+|+|+++||||||||+|++|||||++|+|.||+++.|.|++ ++
T Consensus 3 s~~~~~l~i~P~~---~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~ 76 (126)
T 1msp_A 3 SVPPGDINTQPSQ---KIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DT 76 (126)
T ss_dssp CCCCCCEEEESSS---CEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CC
T ss_pred CCCCCeEEEcCCC---eEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cC
Confidence 3456779999995 99999999999999999999999999999999999999999999999999999999999 77
Q ss_pred CCCCCCCCCCCCCeEEEEEEEeCCCCC-ChhHhhhccCCCcceeEEeEEEEe
Q 028956 85 ENNEKPMYQKSRDKFKIISMKVKADVD-YVPELFDEQKDQTAAEQILRVVFL 135 (201)
Q Consensus 85 ~~~e~p~~~~~kDKFlVqs~~v~~~~d-~~~~lwk~~~~~~i~e~kLrV~f~ 135 (201)
....+ . ...+|||+||++.++++.+ .+...|....+ .+..++|+|.|.
T Consensus 77 ~~~~~-~-~~~kDKf~Vq~~~~p~~~~~~~~~~wf~~d~-~~~~k~L~V~Yn 125 (126)
T 1msp_A 77 FNAAT-E-DLNNDRITIEWTNTPDGAAKQFRREWFQGDG-MVRRKNLPIEYN 125 (126)
T ss_dssp CCGGG-S-CCSSCEEEEEEEECCTTCCSSCCTHHHHSSS-CCEEEEEEEEEE
T ss_pred CCCCC-C-ccCCCEEEEEEEECCCCcchhhhHHhhcCCC-ceEEEEEEEEec
Confidence 65432 2 2459999999999998863 34555554443 578999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=1.7e-29 Score=193.55 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=92.7
Q ss_pred ceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCC
Q 028956 9 LHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 88 (201)
Q Consensus 9 ~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e 88 (201)
+.|.|+|. +|.|.++. .+|.|+|+|+++.+||||||||+|++|||||+.|+|+||++++|.|++ +++
T Consensus 1 msL~i~P~----~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~--- 67 (109)
T 1row_A 1 MSLTADPP----ACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG--- 67 (109)
T ss_dssp --CEEESS----SEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC---
T ss_pred CeEEEECC----EeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC---
Confidence 35899999 79999884 479999999999999999999999999999999999999999999999 663
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEE
Q 028956 89 KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 133 (201)
Q Consensus 89 ~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~ 133 (201)
..++|||+||++.++++..++.++|++.... ++.+|++.
T Consensus 68 ----~~~~dKflvq~~~~~~~~~d~~~~fk~~~~~--g~~~i~l~ 106 (109)
T 1row_A 68 ----APKEDKLVVHFASAPADATDAQAAFVAVAPA--GTVTIPMS 106 (109)
T ss_dssp ----CCEEEEEEEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred ----CCCCCEEEEEEEECCCCCCCHHHHhhcCCCC--ceEEEEEE
Confidence 2369999999999998877789999997654 66677765
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=3.6e-28 Score=188.26 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=94.6
Q ss_pred ceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCC
Q 028956 9 LHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 88 (201)
Q Consensus 9 ~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e 88 (201)
.++.++|. +|.|+++. .+|.|+|+|+|+.+||||||||+|++|||||+.|+|+||++++|.|++ +++
T Consensus 9 ~~~~~~p~----~l~F~~~g---g~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~--- 75 (116)
T 1m1s_A 9 SMINVDPP----TGNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG--- 75 (116)
T ss_dssp CSEEEESS----EEEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC---
T ss_pred eeeecCCC----eEEEecCC---CEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC---
Confidence 46889999 99999874 599999999999999999999999999999999999999999999999 664
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEE
Q 028956 89 KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 133 (201)
Q Consensus 89 ~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~ 133 (201)
..++|||+||++.++++..++.++|++..+ .++.+|++.
T Consensus 76 ----~~k~DKflVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 76 ----PPKEDKIVIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp ----CSCEEEEEEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred ----CCCCCEEEEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence 146999999999999877777999999765 477888765
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=3.3e-07 Score=69.65 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=70.8
Q ss_pred cccceeCceeEEccCCCceeEEEccCC-CCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEee
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISS-TFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKF 80 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~-~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~ 80 (201)
||+++.+....|+..+ .|.|..-. +...+..+.|+|.++.++.|++++.+ -|.|.|+.|.|.||+++.|.|+.
T Consensus 15 Vpl~a~~~~~~l~~p~---~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F- 88 (122)
T 2ys4_A 15 VPIKARGARAILDFPD---KLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEF- 88 (122)
T ss_dssp CCSCCCSCCCCCCCCS---EECCCSEESSSCEEEEEEEECCSSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEE-
T ss_pred EEEEEEcCCcEECCCC---eeecCCeecCCeEEEEEEEEECCCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEE-
Confidence 7888888888888653 78887643 56778999999999999999999854 69999999999999999999997
Q ss_pred ccCCCCCCCCCCCCCCCeEEEEE
Q 028956 81 VELPENNEKPMYQKSRDKFKIIS 103 (201)
Q Consensus 81 ~e~p~~~e~p~~~~~kDKFlVqs 103 (201)
.|... ......+.|..
T Consensus 89 --~P~~~-----g~~~~~l~v~~ 104 (122)
T 2ys4_A 89 --EPQSV-----GDHSGRLIVCY 104 (122)
T ss_dssp --CCSSS-----BCCCCBCEEEE
T ss_pred --EcCCC-----ccEEEEEEEEE
Confidence 56532 23455555543
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.09 E-value=2e-05 Score=61.72 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=58.2
Q ss_pred eeEEccCCCceeEEEcc-CCCCceEEEEEEEcCCCCeEEEEEeeC------CCcceeecCCceeeCCCCeEEEEEEeec
Q 028956 10 HDHFYPNGAVSSLILPI-SSTFPVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKFV 81 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~-~~~k~~~~~LtLtN~S~~~VAFKVKTT------aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~ 81 (201)
.+.+++. .|.|-. .+++..+.+|+|+|++.-+..|++... .+.-+.|.|+.|.|.||+++.|.|++++
T Consensus 26 ~i~v~~~----~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 26 SLELSRR----EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp CEEESCC----EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred ceEeeee----eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 7888888 899985 467788999999999999999999753 3345889999999999999999999853
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=2.1e-05 Score=57.88 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=57.8
Q ss_pred eCceeEEccCCCceeEEEccC-CCCceEEEEEEEcCCCCeEEEEEeeCC-C--cceeecCCceeeCCCCeEEEEEEe
Q 028956 7 LPLHDHFYPNGAVSSLILPIS-STFPVRSAIKIKNTSKSHVAFKFQTTA-P--KSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 7 ~p~~L~i~P~~~~~eL~F~~~-~~k~~~~~LtLtN~S~~~VAFKVKTTa-P--~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
++..+++++. .|.|-.- .+...+..++|+|+++.++.|++.... . .-|.+.|+.|.|.||++..|.|++
T Consensus 6 ~~P~i~~~~~----~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f 78 (112)
T 2e6j_A 6 SGPKIHFNFE----LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF 78 (112)
T ss_dssp CCCSEEESCS----EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred CCCEEEECcc----cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence 3457889988 7888664 466788999999999999999996421 1 469999999999999999999998
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.60 E-value=0.00027 Score=63.20 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=57.8
Q ss_pred eeEEccCCCceeEEEcc-CCCCceEEEEEEEcCCCCeEEEEEeeCCCc-c-----eeecCCceeeCCCCeEEEEEEeec
Q 028956 10 HDHFYPNGAVSSLILPI-SSTFPVRSAIKIKNTSKSHVAFKFQTTAPK-S-----CFMRPPGAILAPGESLIATVFKFV 81 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~-~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~-~-----Y~VrP~~GiI~Pg~s~~I~V~l~~ 81 (201)
.+.+++. ++.|.. .++...+.+|+|+|++.-++.|++.....+ . +.|.|+.|+|.||+++.|.|++++
T Consensus 29 ~v~v~~~----~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v 103 (366)
T 3qis_A 29 SLELSRR----EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 103 (366)
T ss_dssp CEEESCS----EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred eEEEecC----eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence 7889988 899964 567789999999999999999999754222 2 569999999999999999999854
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.44 E-value=0.016 Score=47.85 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=56.0
Q ss_pred eeEEccCCCceeEEEccC-CCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028956 10 HDHFYPNGAVSSLILPIS-STFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~-~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.|+++|. .+.|..- .++.....++++|+++.++-++.-.. |..+..++..+.|+||++..|.|++
T Consensus 2 ~i~~~~~----~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~ 67 (220)
T 2qsv_A 2 PLQVSNA----RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL 67 (220)
T ss_dssp CEEESCS----EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred ceEEecC----eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence 3788888 8998774 35567789999999999999997644 8888889999999999999999998
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.43 E-value=0.069 Score=43.88 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=53.8
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEE-EEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAF-KVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.+.++ . .+.|-.-.+...+..++|+|.++.++.+ +|+|+. +-..+.++.+.|.||++..|.|++
T Consensus 119 ~i~~~-~----~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~ 183 (220)
T 2qsv_A 119 VMELS-T----YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAV 183 (220)
T ss_dssp CEECC-C----EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEE
T ss_pred EEEEE-e----EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEE
Confidence 57777 6 7888643377888999999999999987 888764 677888889999999999999998
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=88.86 E-value=7.2 Score=32.93 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=66.9
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCC------C----cceeecCCceeeCCCCeEEEEEEe
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTA------P----KSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTa------P----~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.|.|+|. .+.|+.. +...+|+|+|.++.++.--+-... | .-|.|-|+.-.|+||+...|.|..
T Consensus 29 ~v~i~~T----RvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~ 101 (257)
T 3q48_A 29 GLIAQGT----RVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAY 101 (257)
T ss_dssp --CCSCS----EEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEE
T ss_pred eEEEcce----EEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEE
Confidence 3567777 6777664 346899999999887665543221 1 139999999999999999999987
Q ss_pred eccCCCCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeCCC
Q 028956 80 FVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 138 (201)
Q Consensus 80 ~~e~p~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~p~ 138 (201)
... ..|.|.. --|-+....++...+. ....=+.....+|++-|-+..
T Consensus 102 ---~~~--~LP~DrE--Slf~lnv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~~ 148 (257)
T 3q48_A 102 ---LKA--PLPTDRE--SLFWLNILEVPPRDED-----ENNALQFSFRSRFKLFFRPSQ 148 (257)
T ss_dssp ---CCC--CCCSSSC--EEEEEEEEEECCC--------------CCEEEEEEEEEECTT
T ss_pred ---CCC--CCCCCce--eEEEEEeeecCCCCCC-----CCceEEEEEEEEEEEEEeccc
Confidence 221 1233322 2466666666653221 111112345788888887543
No 14
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=85.24 E-value=9.2 Score=31.36 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=66.3
Q ss_pred eEEccCCCceeEEEccCCCCceEEEEEEEcCCCC-eEEEEEeeCC-------CcceeecCCceeeCCCCeEEEEEEeecc
Q 028956 11 DHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKS-HVAFKFQTTA-------PKSCFMRPPGAILAPGESLIATVFKFVE 82 (201)
Q Consensus 11 L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~-~VAFKVKTTa-------P~~Y~VrP~~GiI~Pg~s~~I~V~l~~e 82 (201)
+.|++. .+.|+... ...+|+|+|.++. ++.--+-... ..-|.|-|+.-.|+||+...|.|..
T Consensus 2 v~l~~T----RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~--- 71 (218)
T 2xg5_A 2 VSLDRT----RAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST--- 71 (218)
T ss_dssp EEESCS----EEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEE---
T ss_pred cEeCce----EEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEe---
Confidence 566777 67777663 5779999999987 7655543321 2249999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeCC
Q 028956 83 LPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 137 (201)
Q Consensus 83 ~p~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~p 137 (201)
.+.....|.|.. .-|-+....++...+. ++ .=+.....+|++-|-+.
T Consensus 72 ~~~~~~lP~DrE--Slf~lnv~eIPp~~~~-----~n-~lqia~r~rIKlFyRP~ 118 (218)
T 2xg5_A 72 TPDISKLPQDRE--SLFYFNLREIPPRSEK-----AN-VLQIALQTKIKLFYRPA 118 (218)
T ss_dssp CGGGGGSCSSSC--EEEEEEEEEECCCCCC-----TT-EEEEEEEEEEEEEEECG
T ss_pred cCCCCCCCCCce--EEEEEEeecCCCCCCC-----Cc-eEEEEehheeeEEEcCc
Confidence 221011234332 3355555555543211 00 00122366777777543
No 15
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=84.90 E-value=8.4 Score=31.69 Aligned_cols=85 Identities=9% Similarity=0.130 Sum_probs=58.4
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeC-----CCcceeecCCceeeCCCCeEEEEEEeeccCC
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFKFVELP 84 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTT-----aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p 84 (201)
.|.|++. .+.|+... ...+|+|+|.++.++.--+-.. ...-|.|-|+.-.|+||+...|.|.. .+
T Consensus 13 ~v~i~~T----RvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~---~~ 82 (221)
T 2co7_B 13 SVKLGAT----RVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR---TG 82 (221)
T ss_dssp ECEESCS----EEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE---CC
T ss_pred EEEEcce----EEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEE---CC
Confidence 4677888 78887653 5679999999988765544321 12249999999999999999999987 23
Q ss_pred CCCCCCCCCCCCCeEEEEEEEeCC
Q 028956 85 ENNEKPMYQKSRDKFKIISMKVKA 108 (201)
Q Consensus 85 ~~~e~p~~~~~kDKFlVqs~~v~~ 108 (201)
. ..|.+.. --|-+....++.
T Consensus 83 ~--~lP~DrE--slf~lnv~eIPp 102 (221)
T 2co7_B 83 G--DMPTDRE--TLQWVCIKAVPP 102 (221)
T ss_dssp C--CCCSSSC--EEEEEEEEEECC
T ss_pred C--CCCCCce--EEEEEEeecCCC
Confidence 1 1234322 246666666665
No 16
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=80.82 E-value=8.7 Score=28.14 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=46.7
Q ss_pred eCceeEEccCCCceeEEEccCCCC-ceEEEEEEEcCCCCeEEEEEeeCCCcceee-cCCceeeCCCCeEEEEEEe
Q 028956 7 LPLHDHFYPNGAVSSLILPISSTF-PVRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGAILAPGESLIATVFK 79 (201)
Q Consensus 7 ~p~~L~i~P~~~~~eL~F~~~~~k-~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~V-rP~~GiI~Pg~s~~I~V~l 79 (201)
.|+.|.+-..- ..|.-....|. ...-.|+|.|++.++..|.+.-.....+.+ .|..=.|+||+...+.|.+
T Consensus 9 ~~~~l~V~rdR--~~Ly~~~~dG~I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v 81 (118)
T 2r39_A 9 DPAGMSVIRDR--NQLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSL 81 (118)
T ss_dssp CSEEEEEEECS--SCCCCC--CCSEEEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEE
T ss_pred CccEEEEEecC--CceEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEE
Confidence 35556665551 13433333343 457899999999999999988766444554 3554588899988877776
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=80.06 E-value=14 Score=30.81 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=57.0
Q ss_pred ceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEee-----CCCcceeecCCceeeCCCCeEEEEEEeeccC
Q 028956 9 LHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQT-----TAPKSCFMRPPGAILAPGESLIATVFKFVEL 83 (201)
Q Consensus 9 ~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKT-----TaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~ 83 (201)
..|.|++. .+.|+... ...+|+|+|.++.++.--+-. ....-|.|-|+.-.|+||+...|.|.. .
T Consensus 22 a~v~l~~T----RvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~---~ 91 (239)
T 4djm_A 22 FSLHLGAT----RVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVR---T 91 (239)
T ss_dssp ECCEESCS----EEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEE---C
T ss_pred EeEEEcce----EEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEE---C
Confidence 35678888 78877653 467999999998775443321 112249999999999999999999987 2
Q ss_pred CCCCCCCCCCCCCCeEEEEEEEeCC
Q 028956 84 PENNEKPMYQKSRDKFKIISMKVKA 108 (201)
Q Consensus 84 p~~~e~p~~~~~kDKFlVqs~~v~~ 108 (201)
.. ..|.|.. --|-+....++.
T Consensus 92 ~~--~LP~DRE--Slf~lnv~eIPp 112 (239)
T 4djm_A 92 GG--EFPPDRE--SLQWICVKGIPP 112 (239)
T ss_dssp SC--CCCSSSC--EEEEEEEEEECC
T ss_pred CC--CCCCCce--EEEEEEEEecCC
Confidence 21 1234322 235555555554
No 18
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=78.11 E-value=12 Score=33.74 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=46.5
Q ss_pred ceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceee---------cC------------Cceee
Q 028956 9 LHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFM---------RP------------PGAIL 67 (201)
Q Consensus 9 ~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~V---------rP------------~~GiI 67 (201)
-.+.++-. .-.|.- +++..+-+++++|.++++|-..==+|+.-+|.- -| +..-|
T Consensus 248 ~~V~~~v~----~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI 322 (382)
T 1yew_A 248 PTVSVKVE----DATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPL 322 (382)
T ss_dssp CSEEEEEE----EEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCB
T ss_pred CceEEEee----ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCc
Confidence 34444444 344444 477899999999999999988765666655532 12 22348
Q ss_pred CCCCeEEEEEEee
Q 028956 68 APGESLIATVFKF 80 (201)
Q Consensus 68 ~Pg~s~~I~V~l~ 80 (201)
+||+|.++.|..+
T Consensus 323 ~PGETr~~~v~a~ 335 (382)
T 1yew_A 323 APGETRTVDVTAS 335 (382)
T ss_dssp CTTCEEEEEEEEE
T ss_pred CCCceeEEEEEee
Confidence 9999999999983
No 19
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=77.22 E-value=6.4 Score=35.81 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=42.8
Q ss_pred eEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCccee--------------------e-cCCceeeCCCCeEEEEEEe
Q 028956 21 SLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCF--------------------M-RPPGAILAPGESLIATVFK 79 (201)
Q Consensus 21 eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~--------------------V-rP~~GiI~Pg~s~~I~V~l 79 (201)
.-.|.-+ ++..+-+++++|.++++|-+.==+|+.-+|. + .|+ -|.||+|.+++|..
T Consensus 290 ~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGETrt~~V~a 366 (419)
T 3rfr_A 290 GGVYKVP-GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGESKEIVVKI 366 (419)
T ss_dssp EEEEESS-SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCEEEEEEEE
T ss_pred ceEEecC-CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcceEEEEEe
Confidence 4455444 7789999999999999998875566655554 1 122 59999999999998
Q ss_pred e
Q 028956 80 F 80 (201)
Q Consensus 80 ~ 80 (201)
+
T Consensus 367 ~ 367 (419)
T 3rfr_A 367 Q 367 (419)
T ss_dssp E
T ss_pred e
Confidence 4
No 20
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=77.07 E-value=24 Score=28.50 Aligned_cols=111 Identities=9% Similarity=0.098 Sum_probs=66.9
Q ss_pred eEEccCCCceeEEEccCCCCceEEEEEEEcCCCC-eEEEEEeeC-----CCcceeecCCceeeCCCCeEEEEEEeeccCC
Q 028956 11 DHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKS-HVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFKFVELP 84 (201)
Q Consensus 11 L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~-~VAFKVKTT-----aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p 84 (201)
+.+++. .+.|+... ...+|+|+|.++. ++.--+-.. ...-|.|-|+.-.|+||+...|.|....
T Consensus 2 v~l~~T----RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~--- 71 (205)
T 1klf_A 2 VALGAT----RVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDAT--- 71 (205)
T ss_dssp EEESCS----EEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECS---
T ss_pred eEecce----EEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecC---
Confidence 566777 67777663 5789999999987 765554321 1234999999999999999999998511
Q ss_pred CCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCC-CcceeEEeEEEEeCCC
Q 028956 85 ENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE 138 (201)
Q Consensus 85 ~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~-~~i~e~kLrV~f~~p~ 138 (201)
.. ..|.|.. .-|-+....++...+... .... ......+|++-|-+..
T Consensus 72 ~~-~lP~DrE--slf~lnv~eIPp~~~~~~----~~n~lqia~r~riKlFyRP~~ 119 (205)
T 1klf_A 72 NN-QLPQDRE--SLFWMNVKAIPSMDKSKL----TENTLQLAIISRIKLYYRPAK 119 (205)
T ss_dssp CS-CSCSSSC--EEEEEEEEEECCCCTTST----TSCEEEEEEEEEEEEEEECTT
T ss_pred CC-CCCCCce--EEEEEEeEecCCCCcccc----CCceEEEEeeeeeeEEEcccc
Confidence 11 1233322 245565555654321100 0011 1223677777776543
No 21
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=71.69 E-value=11 Score=28.63 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=39.5
Q ss_pred CCCceEEEEEEEcCCCCe-EEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSKSH-VAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~~~-VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.|+..+-.++++|.+... =+|+|+-...+...-.-..+ |+||++.+|.+..
T Consensus 31 ~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~ 82 (127)
T 3idu_A 31 VNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNW 82 (127)
T ss_dssp TTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEE
Confidence 578899999999999755 48998866566544333334 9999999999997
No 22
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=70.14 E-value=21 Score=26.74 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=36.6
Q ss_pred CCceEEEEEEEcCCCCeE-EEEEeeCCCcceeec--CCce-eeCCC--CeEEEEEE
Q 028956 29 TFPVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPG--ESLIATVF 78 (201)
Q Consensus 29 ~k~~~~~LtLtN~S~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg--~s~~I~V~ 78 (201)
.....-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.|+ ..++=.+.
T Consensus 30 ~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~ 85 (123)
T 3mnm_A 30 NSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGT 85 (123)
T ss_dssp SSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEE
T ss_pred CCeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEE
Confidence 334566788889987777 899999999998876 7777 69998 44443333
No 23
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=68.79 E-value=9.4 Score=28.55 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=44.2
Q ss_pred eEEEEEEEcCCCCeE-EEEEeeCCCcceeec--CCce-eeCC--CCeEEEEEEeeccCCCCCCCCCCCCCCCeEEEEEEE
Q 028956 32 VRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAP--GESLIATVFKFVELPENNEKPMYQKSRDKFKIISMK 105 (201)
Q Consensus 32 ~~~~LtLtN~S~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~P--g~s~~I~V~l~~e~p~~~e~p~~~~~kDKFlVqs~~ 105 (201)
..-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.| +..++=.+.+ ..+. ....+=|+.|.+..
T Consensus 31 ~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i--~n~~------~~~lklR~klsY~~ 102 (122)
T 3zy7_A 31 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV--LNPQ------KQQLRMRIKLTFNW 102 (122)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEE--ECTT------CCCCCEEEEEEEEE
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEE--ECCC------CCCEEEEEEEEEEE
Confidence 566777889987666 899999999998876 7777 6888 6655544444 2332 12345566665553
No 24
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=68.15 E-value=6.9 Score=31.81 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=41.9
Q ss_pred ccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEE
Q 028956 3 PVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 76 (201)
Q Consensus 3 ~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~ 76 (201)
++-|=|-.|.-.|.++.+.|.|....+ .|+++|+|..++.|-==+..-+.+ . .|.|.|+++..+.
T Consensus 112 KlFyRP~~l~~~~~~~~~~L~~~~~~~-----~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~ 176 (205)
T 1klf_A 112 KLYYRPAKLALPPDQAAEKLRFRRSAN-----SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVK 176 (205)
T ss_dssp EEEEECTTCSSCGGGSGGGCEECCCSS-----EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEE
T ss_pred eEEEcccccCCChhhhhheeEEEEcCC-----EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceee
Confidence 455556666544554445788876322 599999999999875322222322 2 3799999988765
No 25
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=66.73 E-value=49 Score=26.63 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=67.1
Q ss_pred eEEccCCCceeEEEccCCCCceEEEEEEEcCCC-CeEEEEEeeC-----CCcceeecCCceeeCCCCeEEEEEE-eeccC
Q 028956 11 DHFYPNGAVSSLILPISSTFPVRSAIKIKNTSK-SHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVF-KFVEL 83 (201)
Q Consensus 11 L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~-~~VAFKVKTT-----aP~~Y~VrP~~GiI~Pg~s~~I~V~-l~~e~ 83 (201)
+.+++. .+.|+... ...+|+|+|.++ .++.--+-.. ...-|.|-|+.-.|+||+...|.|. . .
T Consensus 2 v~l~~T----RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~---~ 71 (206)
T 1l4i_A 2 VALGAT----RVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDA---T 71 (206)
T ss_dssp EEESCS----EEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEEC---C
T ss_pred eEeCce----EEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEec---C
Confidence 566777 67777653 678999999986 7765554321 1124999999999999999999998 6 2
Q ss_pred CCCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeCCCC
Q 028956 84 PENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 139 (201)
Q Consensus 84 p~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~p~~ 139 (201)
. . ..|.|..+ -|-+....++...+... ....=+.....+|++-|-+..-
T Consensus 72 ~-~-~lP~DrEs--lf~lnv~eIPp~~~~~~---~~n~lqia~r~riKlFyRP~~l 120 (206)
T 1l4i_A 72 N-G-QMPEDRES--LFWVNVKAIPAMDKAKT---GENYLQFAIVSRIKLLYRPQGL 120 (206)
T ss_dssp T-T-CSCSSSCE--EEEEEEEEEECCC-----------CCCEEEEEEEEEEECTTC
T ss_pred C-C-CCCCCceE--EEEEEeecCCCCccccc---CCceEEEEhhheeeEEEecccc
Confidence 2 1 12444322 45555555544221100 0001123447888888875543
No 26
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=66.67 E-value=4.1 Score=33.64 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=46.2
Q ss_pred cccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEE
Q 028956 2 VPVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 2 ~~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
+++-|=|-.|.-.|.++...|.|....+ .|+++|+|..+|.|-=-+-..+ .+ ..+.|.|+++..+.+
T Consensus 121 IKlFyRP~~L~~~~~~~~~~L~~~~~g~-----~l~v~NptPyyvtl~~l~~~g~--~i--~~~mv~P~s~~~~~l 187 (218)
T 4ay0_A 121 IKLLVRPNELKGTPIQFAENLSWKVDGG-----KLIAENPSPFYMNIGELTFGGK--SI--PSHYIPPKSTWAFDL 187 (218)
T ss_dssp EEEEEECTTCCSCGGGTGGGCEEEEETT-----EEEEEECSSSCEEEEEEEETTE--EC--CCCEECTTEEEEEEC
T ss_pred EEEEEcCcccCCChhHhhhceEEEEeCC-----EEEEECCCCCEEEEEEEEECCE--Ec--cCcEECCCCeeEEEC
Confidence 3556677777777776666788887543 5999999999998842122222 23 248999999877654
No 27
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=66.34 E-value=51 Score=27.17 Aligned_cols=105 Identities=9% Similarity=0.077 Sum_probs=61.5
Q ss_pred eEEccCCCceeEEEccCCCCceEEEEEEEcCCCC-eEEEE--EeeCC----CcceeecCCceeeCCCCeEEEEEEeeccC
Q 028956 11 DHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKS-HVAFK--FQTTA----PKSCFMRPPGAILAPGESLIATVFKFVEL 83 (201)
Q Consensus 11 L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~-~VAFK--VKTTa----P~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~ 83 (201)
+.++.. .+.|+.. ....+|+|+|.++. ++.-- |.... ..-|.|-|+.-.|+||+...|.|.. .
T Consensus 2 ~~l~~T----RvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~---~ 71 (224)
T 3gfu_C 2 LAVDQT----RYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIM---A 71 (224)
T ss_dssp EECSCS----EEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEE---C
T ss_pred ccccce----EEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEE---C
Confidence 445555 6777664 35679999999875 44322 22211 1239999999999999999999987 2
Q ss_pred CCCCCCCCCCCCCCeEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeC
Q 028956 84 PENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 136 (201)
Q Consensus 84 p~~~e~p~~~~~kDKFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~ 136 (201)
.. ..|.+.. --|-+....++...+ ...=+.....+|++-|-+
T Consensus 72 ~~--~LP~DRE--Slf~lnv~eIPp~~~-------~n~Lqiair~rIKLFyRP 113 (224)
T 3gfu_C 72 SD--HLPKDKE--SVYWLNLQDIPPALE-------GSGIAVALRTKLKLFYRP 113 (224)
T ss_dssp SC--CCCSSSC--EEEEEEEEEECCCCS-------SSBCCEEEEEEEEEEEEC
T ss_pred CC--CCCCCce--EEEEEEeecCCCCCC-------CCeEEEEEEEEeeEEEcc
Confidence 21 1233322 335555555554321 001123346667777764
No 28
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=63.24 E-value=60 Score=26.46 Aligned_cols=108 Identities=11% Similarity=0.069 Sum_probs=63.8
Q ss_pred eeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeC-------CCcceeecCCceeeCCCCeEEEEEEeecc
Q 028956 10 HDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTT-------APKSCFMRPPGAILAPGESLIATVFKFVE 82 (201)
Q Consensus 10 ~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTT-------aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e 82 (201)
.+.|+-. .+.|+.. ....+|+|+|.++.++.--.... ...-|.|-|+.-.|+||+...|.|..
T Consensus 13 gv~l~~T----RvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~--- 82 (218)
T 4ay0_A 13 GVTIGES----RIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQ--- 82 (218)
T ss_dssp CEEESCC----EEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEE---
T ss_pred eEEECce----EEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEe---
Confidence 4566666 6777654 34678999999988865543321 11239999999999999999999987
Q ss_pred CCCCCCCCCCCCCCC-eEEEEEEEeCCCCCChhHhhhccCCCcceeEEeEEEEeCC
Q 028956 83 LPENNEKPMYQKSRD-KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 137 (201)
Q Consensus 83 ~p~~~e~p~~~~~kD-KFlVqs~~v~~~~d~~~~lwk~~~~~~i~e~kLrV~f~~p 137 (201)
... ..|.| ++ -|-+....++...+... . .=+.....+|++-|-+.
T Consensus 83 ~~~--~LP~D---RESlf~lnv~eIPp~~~~~~---n--~lqia~r~rIKlFyRP~ 128 (218)
T 4ay0_A 83 AGG--VFPRD---KESLKWLCVKGIPPKDEDIW---V--DVQFAINNCIKLLVRPN 128 (218)
T ss_dssp CSC--CCCSS---SCEEEEEEEEEECC-------------------CEEEEEEECT
T ss_pred cCC--CCCcC---cEEEEEEEEEecCCCCcccc---c--eeEEEEEEEEEEEEcCc
Confidence 221 12333 33 37766666665322100 0 01223466788888654
No 29
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=57.38 E-value=7.8 Score=31.49 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=40.6
Q ss_pred ccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEE
Q 028956 3 PVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 76 (201)
Q Consensus 3 ~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~ 76 (201)
++-|=|-.|.-.|.++.+.|.|.... ..|+++|+|..++.|-=-+.+-+.. . . |.|.|+++..+.
T Consensus 112 KlFyRP~~l~~~~~~~~~~L~~~~~~-----~~l~v~Nptpy~vtl~~l~~~g~~~--~-~-~mv~P~s~~~~~ 176 (206)
T 1l4i_A 112 KLLYRPQGLVIPPEQAPGKLEFTREN-----GGLTLFNPTPYYLTVTDLKAGNKSL--E-N-TMVPPQGKVTVN 176 (206)
T ss_dssp EEEEECTTCSSCGGGSGGGCEEECC--------CEEECCSSSCEEEEEEEETTEEC--C-C-EEECTTCEEECC
T ss_pred eEEEeccccCCChhhhhheeEEEEcC-----CEEEEECCCCceEEEEEEeeCCcEe--e-e-eEEcCCCcceee
Confidence 45556666654455445678887632 2599999999999875222222222 2 2 899999988754
No 30
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=52.23 E-value=3.7 Score=34.42 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=38.5
Q ss_pred cceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEE
Q 028956 4 VRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIAT 76 (201)
Q Consensus 4 ~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~ 76 (201)
+-|=|-.|.-.|.++...|.|....+ .|+++|+|..+|.|- ++- .-+ .+. ..|.|.|+++..+.
T Consensus 145 LFyRP~~L~~~~~~a~~~L~~~~~g~-----~l~v~NptPyyvtl~~l~~-~g~--~~~-~~~mV~P~s~~~~~ 209 (239)
T 4djm_A 145 LFVRPPAVKGRPDDVAGKVEWQRAGN-----RLKGVNPTPFYINLSTLTV-GGK--EVK-EREYIAPFSSREYP 209 (239)
T ss_dssp EEECCTTSCSCHHHHGGGCEEEEETT-----EEEEECCSSSCBCEEEEEE-TTE--ECS-SCCCBCTTCEEEEE
T ss_pred EEEcCcccccCchhhhheeEEEEeCC-----EEEEECCCceEEEEEEEEE-CCE--ecc-CceeEcCCcceEEE
Confidence 33444444433333334677766422 499999999888763 322 222 222 56899999988764
No 31
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=50.02 E-value=25 Score=30.81 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=38.9
Q ss_pred EEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028956 34 SAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 34 ~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
-.+.|+|.|+- -|.++-+++..|.+.++.=.|+|+++..+.|..
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGF 313 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEE
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEec
Confidence 58888898876 566777899999999999999999999999987
No 32
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=48.72 E-value=21 Score=27.46 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=30.4
Q ss_pred eEEEEEEEcCCCCeE-EEEEeeCCCcceeec--CCce-eeCCCC
Q 028956 32 VRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGE 71 (201)
Q Consensus 32 ~~~~LtLtN~S~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg~ 71 (201)
..-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.|+.
T Consensus 55 ~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~ 98 (146)
T 1iu1_A 55 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFN 98 (146)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGG
T ss_pred EEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCC
Confidence 455678889887655 899998899988877 6666 688844
No 33
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=48.25 E-value=59 Score=23.40 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=37.5
Q ss_pred CCCceEEEEEEEcCCC---CeEEEEEeeCCC---cceeecCCceeeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSK---SHVAFKFQTTAP---KSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~---~~VAFKVKTTaP---~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
-++...+.++++|+-. ....|-|--..- ..+. .|-|.||+++.+++.+
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~----~~~v~pg~~~~~~~~~ 71 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN----VGDIGGNETVTLRQSF 71 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE----ECCBCTTCEEEEEEEE
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE----cCcCCCCCEEEEEEEE
Confidence 3678999999999976 666888875333 3333 3779999999999998
No 34
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=47.19 E-value=19 Score=29.37 Aligned_cols=70 Identities=16% Similarity=0.066 Sum_probs=42.7
Q ss_pred cccceeCceeEEc-cCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecC-CceeeCCCCeEEEE
Q 028956 2 VPVRFLPLHDHFY-PNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRP-PGAILAPGESLIAT 76 (201)
Q Consensus 2 ~~~~~~p~~L~i~-P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP-~~GiI~Pg~s~~I~ 76 (201)
+++-|=|-.|.-. +.++...|.|....+ .|+++|+|..+|.|-=-+-..+.-.+.. ..|.|.|+++..+.
T Consensus 111 IKlFyRP~~l~~~~~~~~~~~L~~~~~~~-----~l~v~Nptpy~vtl~~l~~~~~g~~~~~~~~~mv~P~s~~~~~ 182 (218)
T 2xg5_A 111 IKLFYRPAAIKTRPNEVWQDQLILNKVSG-----GYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVK 182 (218)
T ss_dssp EEEEEECGGGCCCTTCCCGGGCEEEEETT-----EEEEEECSSSCEEEEEEESSHHHHHHSCCCCEEECTTEEEEEE
T ss_pred eeEEEcCccccCCCchhhhceEEEEEcCC-----EEEEECCCCCeEEEEEEEEccCCcCccccCcceEcCCCceeec
Confidence 3555666666533 333335788876322 5999999999998842222211111211 46899999988765
No 35
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=47.09 E-value=4.8 Score=33.16 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=39.5
Q ss_pred ccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEEE
Q 028956 3 PVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 3 ~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
++-|=|-.|.-.|.++.+.|.|....+ .|+++|+|..++.|- ++. .-+. +. ..|.|.|+++..+.+
T Consensus 127 KlFyRP~~l~~~~~~~~~~L~~~~~g~-----~l~v~Nptpy~vtl~~l~~-~g~~--~~-~~~mv~P~s~~~~~l 193 (221)
T 2co7_B 127 KLIFRPDAVKGTPEDVAGNLRWVETGN-----KLKVENPTPFYMNLASVTV-GGKP--IT-GLEYVPPFADKTLNM 193 (221)
T ss_dssp EEEEECTTSCSCHHHHGGGCEEEEETT-----EEEEEECSSSCBCEEEEEE-TTEE--CC-CCCCBCTTEEEEEC-
T ss_pred eEEEeccccccChhhhhhceEEEEcCC-----EEEEECCCCcEEEEEEEee-CCee--cc-CceeEcCCCceEEec
Confidence 344445555433332234677765322 599999999888764 332 2222 32 578999999887653
No 36
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=41.58 E-value=13 Score=31.26 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=39.2
Q ss_pred ccceeCceeEEccCCCceeEEEccCCC--CceEEEEEEEcCCCCeEEEE-EeeC-CCcceeecCCceeeCCCCeEEEEE
Q 028956 3 PVRFLPLHDHFYPNGAVSSLILPISST--FPVRSAIKIKNTSKSHVAFK-FQTT-APKSCFMRPPGAILAPGESLIATV 77 (201)
Q Consensus 3 ~~~~~p~~L~i~P~~~~~eL~F~~~~~--k~~~~~LtLtN~S~~~VAFK-VKTT-aP~~Y~VrP~~GiI~Pg~s~~I~V 77 (201)
|+-|=|-.|.-. .++...|.|..... ......|+++|+|..+|.|- ++-. ....+.. ..|.|.|+++..+.+
T Consensus 141 KLFyRP~~L~~~-~~a~~~L~~~~~~~~~~~~~~~L~v~Nptpyyvtl~~l~~~~~~~~~~~--~~~mV~P~s~~~~~l 216 (257)
T 3q48_A 141 KLFFRPSQLKSV-DSAAGKLQWKFLESGGAGKKTVVQVNNPTPYYVSFASVELIVDGRVMSV--GKGMVAPFSTKEFDW 216 (257)
T ss_dssp EEEEECTTCCCG-GGSGGGCEEEECC--------CEEEEECSSSCEEEEEEEEEETTEEEEE--EEEEECTTEEEEECC
T ss_pred EEEEecccCccc-ccchhceEEEEeecccCCCCcEEEEECCCceEEEEEEEEEccCCeeccc--cceeEcCCceeEEec
Confidence 344445444332 22335788876511 12234699999999999873 3221 1222222 357899999887654
No 37
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=41.04 E-value=11 Score=31.42 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=39.2
Q ss_pred ccceeCceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEE-EEeeCCCcceeecC----CceeeCCCCeEE
Q 028956 3 PVRFLPLHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRP----PGAILAPGESLI 74 (201)
Q Consensus 3 ~~~~~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAF-KVKTTaP~~Y~VrP----~~GiI~Pg~s~~ 74 (201)
++-|=|-.|.-.|.++...|.|....+. .++++|+|..+|.| .+...+-+.+.+.. ..+.|+|+++..
T Consensus 108 KLFyRP~~L~~~~~~a~~~L~~~~~~~~----~l~v~NpTPyyvtl~~l~~~~g~~~~~~~~~~~~~~mvaP~s~~~ 180 (224)
T 3gfu_C 108 KLFYRPKALLEGRKGAEEGISLQSRPDG----RTMLVNTTPYIFAIGSLLDGNGKKIATDNGTTQKLLMFMPGDEVQ 180 (224)
T ss_dssp EEEEECGGGTTCCTTGGGGCEEEEC--C----CEEEECCSSSCBCEEEEEETTSCEECCCHHHHHHHTTBCTTCEEE
T ss_pred eEEEcccccccCccchhhceEEEEecCC----cEEEECCCceEEEEEEeeecCCeEecccccccccceeecCCccce
Confidence 4455566665555554567888653222 27789999999988 35433333332211 124788888754
No 38
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=38.02 E-value=89 Score=24.38 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=51.7
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCCeEEEEEEEeCCCC
Q 028956 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV 110 (201)
Q Consensus 32 ~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~e~p~~~e~p~~~~~kDKFlVqs~~v~~~~ 110 (201)
..-..-|-|.|+-.+.|=.-+...+.+.+| ..|.|+|+..+.|.=.- .. +...-.+|.||.+....+.
T Consensus 28 t~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~---~~-------eln~~~~~~vQ~layK~~k 95 (147)
T 2huh_A 28 TPFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFT---KD-------VLNEMERVAVQLIAFKDGK 95 (147)
T ss_dssp CCEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEEC---GG-------GGGGCSSEEEEEEEECSSS
T ss_pred cceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeC---hh-------HhcCCceEEEEEEEEcCCC
Confidence 345778899999999999988777777766 78999999998887443 11 1233577999999987743
No 39
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=37.19 E-value=65 Score=27.04 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=33.7
Q ss_pred CCceEEEEEEEcCCCCeE-EEEEeeCCCcceeecCCc-----eeeCCCCeEEEEEEee
Q 028956 29 TFPVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMRPPG-----AILAPGESLIATVFKF 80 (201)
Q Consensus 29 ~k~~~~~LtLtN~S~~~V-AFKVKTTaP~~Y~VrP~~-----GiI~Pg~s~~I~V~l~ 80 (201)
+.+..=.|+++|.+..++ -|.|+-. .+.|-+-|.. .-|.||++.++.|-+-
T Consensus 54 ~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 54 QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeee
Confidence 345678999999998654 3444443 3334444322 4499999999998873
No 40
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.28 E-value=1.3e+02 Score=22.33 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=31.3
Q ss_pred eEEEEEEEcCCCCeE-EEEEeeCCCcceeec--CCce-eeCCCCe
Q 028956 32 VRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGES 72 (201)
Q Consensus 32 ~~~~LtLtN~S~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg~s 72 (201)
..-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.|+..
T Consensus 40 ~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~ 84 (131)
T 2e9g_A 40 LLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGG 84 (131)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTC
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCC
Confidence 455778889887656 899998899988877 5556 6888554
No 41
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=36.12 E-value=1.3e+02 Score=28.00 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=37.2
Q ss_pred ceEEEEEEEcCCCCeEEEEEeeCCCcce--eecCCceee-CCCCeEEEEEEe
Q 028956 31 PVRSAIKIKNTSKSHVAFKFQTTAPKSC--FMRPPGAIL-APGESLIATVFK 79 (201)
Q Consensus 31 ~~~~~LtLtN~S~~~VAFKVKTTaP~~Y--~VrP~~GiI-~Pg~s~~I~V~l 79 (201)
..+-.-|+||..+..-.|++..++|.-. .|.|+.=.+ ..|++..++|++
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~ 589 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV 589 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEE
Confidence 3445668999999999999998888754 456877655 468888777776
No 42
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=35.12 E-value=1.4e+02 Score=28.13 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=37.7
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCCcceee--cCCceee-CCCCeEEEEEEe
Q 028956 32 VRSAIKIKNTSKSHVAFKFQTTAPKSCFM--RPPGAIL-APGESLIATVFK 79 (201)
Q Consensus 32 ~~~~LtLtN~S~~~VAFKVKTTaP~~Y~V--rP~~GiI-~Pg~s~~I~V~l 79 (201)
.+-+-|+||..+..-.|+++.++|.-..| .|..=.. ..|++...+|++
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~ 610 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTI 610 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEE
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEE
Confidence 67788999999888889999999987665 5888766 489998888887
No 43
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=34.42 E-value=53 Score=32.46 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=34.9
Q ss_pred eEEEEEEEcCC------CCeEE--------------EEEeeCCCcceeecCCcee--eCCCCeEEEEEEe
Q 028956 32 VRSAIKIKNTS------KSHVA--------------FKFQTTAPKSCFMRPPGAI--LAPGESLIATVFK 79 (201)
Q Consensus 32 ~~~~LtLtN~S------~~~VA--------------FKVKTTaP~~Y~VrP~~Gi--I~Pg~s~~I~V~l 79 (201)
....|+|+|.+ +=.+. |||..-+-+.|.+.|.-++ |+||++..|.++.
T Consensus 40 ~~~~~tl~n~~~~~~~~~w~iyf~~~r~i~~~~~~~~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~~~~ 109 (858)
T 1c7s_A 40 NRVLFTLSNDGQAIDGKDWVIYFHSPRQTLRVDNDQFKIAHLTGDLYKLEPTAKFSGFPAGKAVEIPVVA 109 (858)
T ss_dssp EEEEEEEEECSSCBCCCCCEEEEECSSCEEEECSTTEEEEECSTTEEEEEECTTCCCBCTTEEEEEEEEE
T ss_pred eEEEEEEEcCCCCcCCCCcEEEEecceeeecCCCCCeeEEEEeCeEEEEecCCCCCccCCCCEEEEEEEe
Confidence 46789999992 21222 4555445566888899886 9999999999974
No 44
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=34.40 E-value=1.5e+02 Score=22.41 Aligned_cols=41 Identities=20% Similarity=0.415 Sum_probs=30.9
Q ss_pred eEEEEEEEcCCCCeE-EEEEeeCCCcceeec--CCce-eeCCCCe
Q 028956 32 VRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGES 72 (201)
Q Consensus 32 ~~~~LtLtN~S~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg~s 72 (201)
..-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.|+..
T Consensus 49 ~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~ 93 (140)
T 1gyu_A 49 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNT 93 (140)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGC
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCC
Confidence 455678889887655 899999899998877 6666 6888443
No 45
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=33.88 E-value=21 Score=24.53 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.2
Q ss_pred eeeehhHHHHHHHHHHHHh
Q 028956 175 EGLVIDEWKERRERYLARQ 193 (201)
Q Consensus 175 ~~~~~~~~~~~r~~~~~~~ 193 (201)
|.=+|.+|+|+|..-|+.-
T Consensus 7 EpE~Ir~WRE~~~~~i~er 25 (70)
T 1xi4_J 7 EPESIRKWREEQTERLEAL 25 (70)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4448999999999988753
No 46
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=33.78 E-value=36 Score=25.28 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=27.7
Q ss_pred ceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeC
Q 028956 9 LHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTT 53 (201)
Q Consensus 9 ~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTT 53 (201)
+.|.+.|.+ ++.|. .-.+..++..|+|.|+...++.-|+|-+
T Consensus 58 ~kL~L~p~S-g~~l~--p~~~~~itQ~l~i~n~~~~~lklR~kls 99 (122)
T 3zy7_A 58 FQLQLLSPS-SSVVP--AFNTGTITQVIKVLNPQKQQLRMRIKLT 99 (122)
T ss_dssp SEEEECCCS-CSCBC--GGGSCCEEEEEEEECTTCCCCCEEEEEE
T ss_pred cEEEecCCC-CCccC--CCCCCCEEEEEEEECCCCCCEEEEEEEE
Confidence 457777774 22232 2124579999999999877777666654
No 47
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=32.86 E-value=59 Score=24.25 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCeEE---EEEeeCCCc---ceeecCCceeeCCCCeEEEE
Q 028956 34 SAIKIKNTSKSHVA---FKFQTTAPK---SCFMRPPGAILAPGESLIAT 76 (201)
Q Consensus 34 ~~LtLtN~S~~~VA---FKVKTTaP~---~Y~VrP~~GiI~Pg~s~~I~ 76 (201)
..++|.|.++..+. |+++-...+ .|.. |+.=+|.||++++|-
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtVw 72 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTIW 72 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEEE
Confidence 37899999987664 777644332 3544 655589999997653
No 48
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=32.85 E-value=68 Score=24.05 Aligned_cols=51 Identities=14% Similarity=0.021 Sum_probs=32.2
Q ss_pred CCCceEEEEEEEcCCC-----CeEEEEEeeCCC--cceeecCCceeeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSK-----SHVAFKFQTTAP--KSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~-----~~VAFKVKTTaP--~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.+..++-..+++|... ..|.|-+..-+- ......+ .|-|++|++..++|..
T Consensus 14 ~g~~vTvsatVkN~Gt~~s~a~~V~~yl~~p~~gg~~vgt~t-v~~LaaG~s~t~~v~~ 71 (122)
T 2kut_A 14 EGEEITVSARVTNRGAAEAHNVPVAVYLGNPAQGGVEIGRDT-ISRIPVGGTGLARVQW 71 (122)
T ss_dssp TTCEEEEEEEEECCSSSCBCCCCEEECSSCTTTCCCCCBCCC-CSCBCTTCEEECCEEE
T ss_pred CCCeEEEEEEEEeCCCcccCcEEEEEEeCCCccCCeEEeeEE-ccccCCCCeEEEEEEE
Confidence 5678888999999974 344444443001 1223333 4779999999965554
No 49
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=30.88 E-value=45 Score=21.96 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.7
Q ss_pred EEEEEcCCCCeEEEEEeeCCC
Q 028956 35 AIKIKNTSKSHVAFKFQTTAP 55 (201)
Q Consensus 35 ~LtLtN~S~~~VAFKVKTTaP 55 (201)
.|+++..+...+.|||+.|.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 578888888899999997766
No 50
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=28.46 E-value=1.3e+02 Score=21.89 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=38.7
Q ss_pred CCCceEEEEEEEcCCCCe--EEEEEeeCCCcceeecCC-ce----eeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSKSH--VAFKFQTTAPKSCFMRPP-GA----ILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~~~--VAFKVKTTaP~~Y~VrP~-~G----iI~Pg~s~~I~V~l 79 (201)
.+...+...+|+|.+..+ +.||+-==..+-+.|.|. .. +|.++++..|.-+-
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~va 94 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTALS 94 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEEEC
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEEEC
Confidence 455678999999999866 788887666777777765 22 47788887777664
No 51
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=28.29 E-value=82 Score=24.52 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=27.9
Q ss_pred eCceeEEccCCCceeEEEccCCCCceEEEEEEE--cCCCCeEEEEEeeCCCcc
Q 028956 7 LPLHDHFYPNGAVSSLILPISSTFPVRSAIKIK--NTSKSHVAFKFQTTAPKS 57 (201)
Q Consensus 7 ~p~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLt--N~S~~~VAFKVKTTaP~~ 57 (201)
+|....-++. .+.|-..+.....+.+++. +.....+.|.++|+.++-
T Consensus 5 ~p~~~~~~~~----~~~F~~~~~~~~~~y~~~~~~~~~~~~is~~frT~~~~G 53 (205)
T 1f5f_A 5 LPTQSAHDPP----AVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPEG 53 (205)
T ss_dssp --------CC----CEESCCTTCCSCSEEEEEEGGGCCCCEEEEEEEESCSSE
T ss_pred cCcccccCCc----cEEeccCCCCcEeEEEEECCCCCCceEEEEEEEeCCCCE
Confidence 4555566666 6888877654323566665 455689999999998764
No 52
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=27.86 E-value=1.5e+02 Score=20.24 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028956 34 SAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 34 ~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
-.+.++|....+-.|-+.... ..+.+.||++..++++.
T Consensus 38 V~~~~~n~d~~~H~~~~~~~~--------~~~~~~pg~~~~~~~t~ 75 (100)
T 4hci_A 38 TTLLLKNKGKSEHTFTIKKLG--------IDVVVESGKEKNITVKP 75 (100)
T ss_dssp EEEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEECC
T ss_pred EEEEEEcCCCceEEEEEecCC--------cceeecCCcceeEEEec
Confidence 345667876655556553321 13578899998888773
No 53
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=27.84 E-value=1.6e+02 Score=23.13 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=38.2
Q ss_pred CceEEEEEEEcCCC-----CeEEEEEeeCCCcce-eecCCceeeCCCCeEEEEEEe
Q 028956 30 FPVRSAIKIKNTSK-----SHVAFKFQTTAPKSC-FMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 30 k~~~~~LtLtN~S~-----~~VAFKVKTTaP~~Y-~VrP~~GiI~Pg~s~~I~V~l 79 (201)
-.....|+|+|+++ .-++|.++...-..= -+-|..|.|.++++..+.|-+
T Consensus 62 ~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv 117 (174)
T 1yyc_A 62 VDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPV 117 (174)
T ss_dssp EEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEE
T ss_pred EEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEE
Confidence 35678999999987 557999987644433 456888999999988887776
No 54
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=27.65 E-value=1.1e+02 Score=23.38 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=36.1
Q ss_pred ceEEEEEEEcCCC-----CeEEEEEeeCCCcce-eecCCceeeCCCCeEEEEEEe
Q 028956 31 PVRSAIKIKNTSK-----SHVAFKFQTTAPKSC-FMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 31 ~~~~~LtLtN~S~-----~~VAFKVKTTaP~~Y-~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.....|+++|+++ .-++|.++...-..- -+-|..|.|.++++..+.|-.
T Consensus 40 ~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv 94 (151)
T 1xo8_A 40 EYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPV 94 (151)
T ss_dssp CEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECC
T ss_pred EEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEE
Confidence 4678999999987 456899987654443 345777888888888777665
No 55
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=27.58 E-value=1.4e+02 Score=21.61 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=38.8
Q ss_pred CCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCC------ceeeCCCCeEEEEEEe
Q 028956 29 TFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPP------GAILAPGESLIATVFK 79 (201)
Q Consensus 29 ~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~------~GiI~Pg~s~~I~V~l 79 (201)
+......++++|.++..+.||+.==..+-+.|.+. .=+|.++++..|.-+-
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~va 91 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRKLA 91 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEEEC
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEEEC
Confidence 44567889999999999999998766777777653 2367788888777664
No 56
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=27.32 E-value=90 Score=23.17 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.7
Q ss_pred ceeeCCCCeEEEEEEe
Q 028956 64 GAILAPGESLIATVFK 79 (201)
Q Consensus 64 ~GiI~Pg~s~~I~V~l 79 (201)
.++|.||++..|++..
T Consensus 83 t~~l~pGes~~vtf~~ 98 (128)
T 2iaa_C 83 TSVIGGGETDSVTFDV 98 (128)
T ss_dssp CCCBCTTCEEEEEEES
T ss_pred ceeeCCCCEEEEEEec
Confidence 4578999999999985
No 57
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=26.62 E-value=1.3e+02 Score=21.77 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=33.7
Q ss_pred CceEEEEEEEcCCCCeE-----EEEEe-------------eCCCcceeecCC--ceeeCC-CCeEEEEEEe
Q 028956 30 FPVRSAIKIKNTSKSHV-----AFKFQ-------------TTAPKSCFMRPP--GAILAP-GESLIATVFK 79 (201)
Q Consensus 30 k~~~~~LtLtN~S~~~V-----AFKVK-------------TTaP~~Y~VrP~--~GiI~P-g~s~~I~V~l 79 (201)
.-....++|+|.++.+| .|-+- +.+-..|.+++. .|.|+| |+++.+-+.-
T Consensus 15 ~Gf~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g 85 (107)
T 3ndz_E 15 SGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNI 85 (107)
T ss_dssp SEEEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEE
T ss_pred CCEEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEE
Confidence 34577899999886654 33321 112356888864 489999 9988877664
No 58
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=25.34 E-value=64 Score=22.57 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=18.9
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCC
Q 028956 33 RSAIKIKNTSKSHVAFKFQTTAP 55 (201)
Q Consensus 33 ~~~LtLtN~S~~~VAFKVKTTaP 55 (201)
.-.|+++..+...|.|||+.|.+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCh
Confidence 35788888888899999997766
No 59
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=24.40 E-value=65 Score=24.51 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=25.8
Q ss_pred ceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeC
Q 028956 9 LHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTT 53 (201)
Q Consensus 9 ~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTT 53 (201)
+.|.+.|.+ ++.|. .-.+..++..|+|.|+...++..|+|-+
T Consensus 76 ~kLqL~ppS-g~~L~--p~~~~~ItQ~m~I~n~~~~~l~LR~kls 117 (140)
T 1gyu_A 76 FQLQLLSPS-SSVVP--AFNTGTITQVIKVLNPQKQQLRMRIKLT 117 (140)
T ss_dssp CEEEECCCS-CSCBC--GGGCCCEEEEEEEECTTCCCCCEEEEEE
T ss_pred cEEEeeCCC-CCccC--CCCCCCEEEEEEEeCCCCCCEEEEEEEE
Confidence 457777753 12221 1112357999999999777777666654
No 60
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=24.05 E-value=1.1e+02 Score=21.31 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=11.0
Q ss_pred ceeeCCCCeEEEEE
Q 028956 64 GAILAPGESLIATV 77 (201)
Q Consensus 64 ~GiI~Pg~s~~I~V 77 (201)
.++|.||++..+++
T Consensus 70 s~~l~~g~~~~~tf 83 (106)
T 1id2_A 70 GEMMTKDQAYAITF 83 (106)
T ss_dssp CCCBCTTEEEEEEE
T ss_pred ccccCCCCEEEEEe
Confidence 46789999887765
No 61
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.99 E-value=56 Score=24.46 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=26.3
Q ss_pred ceeEEccCCCceeEEEccCCCCceEEEEEEEcCCCCeEEEEEeeC
Q 028956 9 LHDHFYPNGAVSSLILPISSTFPVRSAIKIKNTSKSHVAFKFQTT 53 (201)
Q Consensus 9 ~~L~i~P~~~~~eL~F~~~~~k~~~~~LtLtN~S~~~VAFKVKTT 53 (201)
+.|.+.|.+ +..| ..-.+..++..|+|.|+...++..|+|-+
T Consensus 67 ~kLqL~p~S-g~~l--~p~~~~~ItQ~~~i~n~~~~~l~lR~kls 108 (131)
T 2e9g_A 67 LQLQLQAPS-GNTV--PARGGLPITQLFRILNPNKAPLRLKLRLT 108 (131)
T ss_dssp SCCEECCCS-CSEE--CTTTCCCBCCCEEEECTTCCCCCEEEEEE
T ss_pred cEEEeeCCC-CCCc--CCCCCCCEEEEEEEeCCCCCCEEEEEEEE
Confidence 456777753 1222 12122357899999999877777777754
No 62
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=23.88 E-value=1.6e+02 Score=19.25 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=10.4
Q ss_pred ceeeCCCCeEEEEE
Q 028956 64 GAILAPGESLIATV 77 (201)
Q Consensus 64 ~GiI~Pg~s~~I~V 77 (201)
.+.+.||++..+++
T Consensus 53 ~~~~~~g~~~~~~f 66 (91)
T 1bxv_A 53 DLAFSPGETFEATF 66 (91)
T ss_dssp EEECSTTCEEEEEC
T ss_pred cceeCCCCEEEEEe
Confidence 45788999877754
No 63
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=23.54 E-value=1e+02 Score=22.89 Aligned_cols=16 Identities=25% Similarity=0.135 Sum_probs=13.6
Q ss_pred ceeeCCCCeEEEEEEe
Q 028956 64 GAILAPGESLIATVFK 79 (201)
Q Consensus 64 ~GiI~Pg~s~~I~V~l 79 (201)
.++|.||++..|++..
T Consensus 84 t~~l~pGet~svtf~~ 99 (129)
T 2ccw_A 84 TKVIGGGESDSVTFDV 99 (129)
T ss_dssp CCCBCTTCEEEEEEEG
T ss_pred eeEECCCCEEEEEEec
Confidence 4578999999999885
No 64
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=23.19 E-value=1.5e+02 Score=22.13 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=20.6
Q ss_pred CCCceEEEEEEEcCCCCeEEEEEee
Q 028956 28 STFPVRSAIKIKNTSKSHVAFKFQT 52 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~~~VAFKVKT 52 (201)
.+....-.|+|+|.++.++-+-+.+
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~S 40 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFST 40 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESS
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCC
Confidence 4567889999999999998887744
No 65
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=23.08 E-value=1.7e+02 Score=27.58 Aligned_cols=52 Identities=6% Similarity=0.034 Sum_probs=40.3
Q ss_pred CCCceEEEEEEEcCCCCeEEEEEeeCCCcceeecCCce-----eeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGA-----ILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~~~VAFKVKTTaP~~Y~VrP~~G-----iI~Pg~s~~I~V~l 79 (201)
.|++..-.++|.|.++..+-.+|+-...+.+++....+ .|++|++..|.+.+
T Consensus 166 ~GD~~~i~~~V~N~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~v~a~~~~~v~f~i 222 (767)
T 4fxk_B 166 RFEQLELRPVLYNYLDKNLTVSVHVSPVEGLCLAGGGGLAQQVLVPAGSARPVAFSV 222 (767)
T ss_dssp TTCEEEECCEEEECSSSCEEEEEEECCCTTEECSSSSCCCEEEEECSSCEEECCEEE
T ss_pred cCCEEEEEEEEEECCCCCEEEEEEEEecCCeEEecCCceeEEEEEcCCCeEEEEEEE
Confidence 47788889999999999999999877777777765443 47788877766655
No 66
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=22.88 E-value=1.3e+02 Score=21.94 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=11.1
Q ss_pred ceeeCCCCeEEEEE
Q 028956 64 GAILAPGESLIATV 77 (201)
Q Consensus 64 ~GiI~Pg~s~~I~V 77 (201)
.+.|.||++..+++
T Consensus 96 s~~l~pG~t~~~tF 109 (132)
T 3c75_A 96 GEMMTKDQAYAITF 109 (132)
T ss_dssp CCCBCTTEEEEEEE
T ss_pred ccccCCCCEEEEEc
Confidence 46789999888765
No 67
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=22.29 E-value=68 Score=23.42 Aligned_cols=17 Identities=35% Similarity=0.171 Sum_probs=14.2
Q ss_pred CceeeCCCCeEEEEEEe
Q 028956 63 PGAILAPGESLIATVFK 79 (201)
Q Consensus 63 ~~GiI~Pg~s~~I~V~l 79 (201)
....|.||++..+++++
T Consensus 96 ~t~~l~pG~~~~~~~~~ 112 (140)
T 1qhq_A 96 WTAMLNAGESGSVTFRT 112 (140)
T ss_dssp ECCCBCTTEEEEEEEEC
T ss_pred cceeeCCCceeEEEEEe
Confidence 35689999999999886
No 68
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=22.25 E-value=99 Score=22.97 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=27.0
Q ss_pred EEEEEcCCCCeEE---EEEeeCC---CcceeecCCceeeCCCCeEEE
Q 028956 35 AIKIKNTSKSHVA---FKFQTTA---PKSCFMRPPGAILAPGESLIA 75 (201)
Q Consensus 35 ~LtLtN~S~~~VA---FKVKTTa---P~~Y~VrP~~GiI~Pg~s~~I 75 (201)
.++|.|.++..+. |+++-.. +..-+.=|+.=+|.||++++|
T Consensus 20 fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtI 66 (121)
T 1ifr_A 20 FVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTI 66 (121)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEE
T ss_pred EEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEE
Confidence 7899999876663 6776441 212333466678899998654
No 69
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=22.00 E-value=2.2e+02 Score=23.35 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=37.4
Q ss_pred CceEEEEEEEcCCCCeEE-EEEeeCCCc----ceee--cCCceeeCCCCeEEEEEEe
Q 028956 30 FPVRSAIKIKNTSKSHVA-FKFQTTAPK----SCFM--RPPGAILAPGESLIATVFK 79 (201)
Q Consensus 30 k~~~~~LtLtN~S~~~VA-FKVKTTaP~----~Y~V--rP~~GiI~Pg~s~~I~V~l 79 (201)
...+-.|.+.|.+..++. |++....|. .+.+ .|.-+.|.||+.+...|.+
T Consensus 42 ~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I~~~~q~qq~i~v 98 (247)
T 1kyf_A 42 NLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNI 98 (247)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEEEE
T ss_pred CeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCceeCCCcEEEEEEEE
Confidence 356778999999987664 888765554 2444 6777899999988887765
No 70
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=21.38 E-value=1.9e+02 Score=19.25 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.4
Q ss_pred CceeeCCCCeEEEEE
Q 028956 63 PGAILAPGESLIATV 77 (201)
Q Consensus 63 ~~GiI~Pg~s~~I~V 77 (201)
..+.+.||++..+++
T Consensus 58 ~~~~~~~g~~~~~tf 72 (97)
T 1b3i_A 58 TKLAIAPGSFYSVTL 72 (97)
T ss_dssp CCCCCSCSCCEEEEC
T ss_pred cceecCCCCEEEEEe
Confidence 346789999988765
No 71
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=21.29 E-value=2.8e+02 Score=21.20 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=28.6
Q ss_pred EEEEEcCCCCeE-EEEEeeCCCcceeec--CCce-eeCCCCe
Q 028956 35 AIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGES 72 (201)
Q Consensus 35 ~LtLtN~S~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg~s 72 (201)
.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.|+..
T Consensus 58 ~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ppSg~~L~p~~~ 99 (153)
T 1p4u_A 58 VVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTELSPFSP 99 (153)
T ss_dssp EEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCBCCCBT
T ss_pred EEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCc
Confidence 667779887655 889998889988877 5556 5877553
No 72
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=20.92 E-value=1.3e+02 Score=22.03 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=34.1
Q ss_pred CCCceEEEEEEEcCCC-CeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028956 28 STFPVRSAIKIKNTSK-SHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 79 (201)
Q Consensus 28 ~~k~~~~~LtLtN~S~-~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 79 (201)
.++..+-..+++|.+. ..-+|.|+-...+...=.-+.+-|.+|++..|.++.
T Consensus 17 ~~~~~ti~atVkN~G~~~a~~~~V~ly~~g~~v~t~~v~~LaaG~s~tv~~~w 69 (114)
T 2l0d_A 17 PNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSLESENSTNVDFHW 69 (114)
T ss_dssp TTSEEEEEEEEEECSSSCBCCEEEEEEETTEEEEEEEESCBCBTCEEEEEEEE
T ss_pred CCCeEEEEEEEEECCCCCCCCEEEEEEECCEEEcceecccccCCCEEEEEEEE
Confidence 4667889999999975 334566653333322111234458999999999886
No 73
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=20.68 E-value=1.1e+02 Score=20.77 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=11.2
Q ss_pred CceeeCCCCeEEEEE
Q 028956 63 PGAILAPGESLIATV 77 (201)
Q Consensus 63 ~~GiI~Pg~s~~I~V 77 (201)
..+.+.||++..+++
T Consensus 63 ~~~~~~pG~~~~~tf 77 (102)
T 1kdj_A 63 NDLLSEDEPSFKAKV 77 (102)
T ss_dssp TCCBBTTBCEEEECC
T ss_pred cceecCCCCEEEEEe
Confidence 346789999887754
No 74
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=20.49 E-value=1.9e+02 Score=22.19 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=26.1
Q ss_pred EEEEEcCCCCeEE---EEEeeCCCc---ceeecCCceeeCCCCeEEE
Q 028956 35 AIKIKNTSKSHVA---FKFQTTAPK---SCFMRPPGAILAPGESLIA 75 (201)
Q Consensus 35 ~LtLtN~S~~~VA---FKVKTTaP~---~Y~VrP~~GiI~Pg~s~~I 75 (201)
.++|.|.++..+. |+++=+..+ .| .=|+.=+|.||++++|
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r~v~g~~~~y-~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSY-KYTSRYVLKAGQTVTI 84 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEE-ECCTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEE-EcCCCcEECCCCEEEE
Confidence 7899999876663 566532222 24 3455558999998665
No 75
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=20.26 E-value=93 Score=21.63 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=19.6
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCC
Q 028956 32 VRSAIKIKNTSKSHVAFKFQTTAP 55 (201)
Q Consensus 32 ~~~~LtLtN~S~~~VAFKVKTTaP 55 (201)
..-.|+++..+...+.|||+.|.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEEccCCH
Confidence 456788888888899999997766
Done!