BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028957
         (201 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
          Length = 215

 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--- 60
           +L LGCGNS LS  L+  G   +T +D S+V V  MQ       Y  V  L  + +D   
Sbjct: 46  ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQ-----ACYAHVPQLRWETMDVRK 100

Query: 61  LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120
           L F +  FDVV+EK T++ L     DPW    E V  V  +L  V RVL P G FIS++ 
Sbjct: 101 LDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160

Query: 121 GQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADE 165
             PHFR   +    + WS+   T+G GFH+  Y++ KG + S  +
Sbjct: 161 AAPHFRTRHYAQAYYGWSLRHATYGSGFHFHLYLMHKGGKLSVAQ 205


>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
 pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
          Length = 276

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 2   TSVLELGCGNSRLSEGLYNDGITA-ITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60
             VLE GCG    +  L  +   A IT ID+S  ++EK +E     G K VK L+A++  
Sbjct: 39  AKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS 98

Query: 61  LPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 113
           LPF +  FD +     +E L           PE        L+ + +VLKP G
Sbjct: 99  LPFEDSSFDHIFVCFVLEHL---------QSPEEA------LKSLKKVLKPGG 136


>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
           Thuringiensis
          Length = 242

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 19/110 (17%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL++GCG+   +  L   G  A+  +D+S V ++K +ER       ++  ++ D+  LPF
Sbjct: 57  VLDVGCGDGYGTYKLSRTGYKAVG-VDISEVXIQKGKER---GEGPDLSFIKGDLSSLPF 112

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 113
            N+ F+ +    ++E         W  +P      +  L  + RVLK DG
Sbjct: 113 ENEQFEAIXAINSLE---------WTEEP------LRALNEIKRVLKSDG 147


>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
           (Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
           Resolution
          Length = 230

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 21/114 (18%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL++GC +  L   +  +G T ++ I+    A E+ +E+L       V + + +  D P+
Sbjct: 36  VLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-----DHVVLGDIETXDXPY 89

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117
             + FD VI    +E LF    DPW           A++E V   +K +G+ ++
Sbjct: 90  EEEQFDCVIFGDVLEHLF----DPW-----------AVIEKVKPYIKQNGVILA 128


>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
           Q8puk2_metma From Methanosarcina Mazei. Northeast
           Structural Genomics Consortium Target Mar262
          Length = 235

 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 22/126 (17%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL-------LKGYKEVKVLEA 56
           +L++GCG+ ++S  L + G + +T ID+++ A+   +             G  E KV  A
Sbjct: 34  ILDIGCGSGKISLELASKGYS-VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA 92

Query: 57  DMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
               L F +  FD  + +A +  +         P P+  +++   ++ V RVLKP     
Sbjct: 93  S--SLSFHDSSFDFAVMQAFLTSV---------PDPKERSRI---IKEVFRVLKPGAYLY 138

Query: 117 SVSFGQ 122
            V FGQ
Sbjct: 139 LVEFGQ 144


>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
           Plasmodium Falciparum
 pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
           Plasmodium Falciparum
          Length = 299

 Score = 37.4 bits (85), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VLE+GCG   L+  L       IT ID+ +  + ++++R L +GY  ++V E D +   F
Sbjct: 46  VLEIGCGTGNLTVKLLPLAKKVIT-IDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF 104

Query: 64  SNDCFDV 70
               FDV
Sbjct: 105 PK--FDV 109


>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
 pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
          Length = 260

 Score = 35.4 bits (80), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL+LG G  + S  L   G   +  +D S   +E  +E    KG K   V+EA   DLPF
Sbjct: 58  VLDLGGGTGKWSLFLQERGF-EVVLVDPSKEXLEVARE----KGVK--NVVEAKAEDLPF 110

Query: 64  SNDCFDVVIEKATMEVL-FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118
            +  F+ V+  A  +VL +V + D                  + RVL PDGL I+ 
Sbjct: 111 PSGAFEAVL--ALGDVLSYVENKDK-------------AFSEIRRVLVPDGLLIAT 151


>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
           (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
           1.90 A Resolution
 pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
           (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
           1.90 A Resolution
          Length = 279

 Score = 34.3 bits (77), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 22/114 (19%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           +L+LGCG  +L+E +   G   +   D +A  +EK ++      Y  +    AD  +   
Sbjct: 61  ILDLGCGTGQLTEKIAQSG-AEVLGTDNAATXIEKARQN-----YPHLHFDVADARNFRV 114

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117
                        ++ +F N+   W  +PE      A +  +H+ LK  G F++
Sbjct: 115 DK----------PLDAVFSNAXLHWVKEPE------AAIASIHQALKSGGRFVA 152


>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
 pdb|3BUS|B Chain B, Crystal Structure Of Rebm
          Length = 273

 Score = 33.5 bits (75), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP 62
           VL++GCG  + +  L       +T I +S   V +   R    G    V    AD  DLP
Sbjct: 65  VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXDLP 124

Query: 63  FSNDCFDVV 71
           F +  FD V
Sbjct: 125 FEDASFDAV 133


>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
 pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
          Length = 227

 Score = 33.1 bits (74), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)

Query: 3   SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP 62
            VL+L CG    S  L + G   +  +D+S   + K +E    +    V+ +  D   L 
Sbjct: 41  KVLDLACGVGGFSFLLEDYGF-EVVGVDISEDXIRKAREYAKSRE-SNVEFIVGDARKLS 98

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116
           F +  FD VI        F++S   + P      ++  + + V RVLKP G FI
Sbjct: 99  FEDKTFDYVI--------FIDSIVHFEP-----LELNQVFKEVRRVLKPSGKFI 139


>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of
           Nucleomethylin
 pdb|2ZFU|B Chain B, Structure Of The Methyltransferase-Like Domain Of
           Nucleomethylin
          Length = 215

 Score = 32.7 bits (73), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 35/112 (31%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           V + GCG+ RL+  + N     + C DL+++               + +V   DM  +P 
Sbjct: 71  VADFGCGDCRLASSIRN----PVHCFDLASL---------------DPRVTVCDMAQVPL 111

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 115
            ++  DV +   ++                  T +   LE  +RVLKP GL 
Sbjct: 112 EDESVDVAVFCLSL----------------MGTNIRDFLEEANRVLKPGGLL 147


>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
           Methyltransferase (Np_104914.1) From Mesorhizobium Loti
           At 1.60 A Resolution
 pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
           Methyltransferase (Np_104914.1) From Mesorhizobium Loti
           At 1.60 A Resolution
          Length = 243

 Score = 32.0 bits (71), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 27/139 (19%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLP 62
           +++LGCG        +  G + +  +DLS    EK   R    G       E AD+  L 
Sbjct: 47  IVDLGCGFGWFCRWAHEHGASYVLGLDLS----EKXLARARAAGPDTGITYERADLDKLH 102

Query: 63  FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122
              D FD+      +                 V  V  +   VH+ L P G F+   F  
Sbjct: 103 LPQDSFDLAYSSLALHY---------------VEDVARLFRTVHQALSPGGHFV---FST 144

Query: 123 PHFRRPFFNAP-QFTWSVE 140
            H   P + AP +  W+++
Sbjct: 145 EH---PIYXAPARPGWAID 160


>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase
          Domain Of Bacterial-Avhen1-Cn
 pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase
          Domain Of Bacterial-Avhen1-Cn
          Length = 202

 Score = 30.4 bits (67), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 4  VLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERL 43
          V++LGCG   L + L  D     IT +D+S  ++E  QERL
Sbjct: 23 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL 63


>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase
          Domain Of Bacterial-Avhen1-C
 pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase
          Domain Of Bacterial-Avhen1-C
          Length = 217

 Score = 30.4 bits (67), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 4  VLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERL 43
          V++LGCG   L + L  D     IT +D+S  ++E  QERL
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL 73


>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
 pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
          Length = 239

 Score = 30.4 bits (67), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 16/120 (13%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF 63
           VL++G G    +   ++  +     +D +   VE        KG + V+  +     LPF
Sbjct: 25  VLDIGAGAGHTALA-FSPYVQECIGVDATKEXVEVASSFAQEKGVENVRFQQGTAESLPF 83

Query: 64  SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123
            +D FD++  +                     + V   +  V RVLK DG F+ V    P
Sbjct: 84  PDDSFDIITCRYAAHHF---------------SDVRKAVREVARVLKQDGRFLLVDHYAP 128


>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
 pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
 pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
 pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
 pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
 pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
           Hmt1
          Length = 328

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 4   VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLP 62
           VL++GCG   LS      G   +  +D+S++ +E  +E + L G+ + + +L   + D+ 
Sbjct: 42  VLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEMAKELVELNGFSDKITLLRGKLEDVH 100

Query: 63  FSNDCFDVVIEK 74
                 D++I +
Sbjct: 101 LPFPKVDIIISE 112


>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7
          Methyltransferase In Complex With Sah
 pdb|3BGV|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7
          Methyltransferase In Complex With Sah
 pdb|3BGV|C Chain C, Crystal Structure Of Mrna Cap Guanine-N7
          Methyltransferase In Complex With Sah
 pdb|3BGV|D Chain D, Crystal Structure Of Mrna Cap Guanine-N7
          Methyltransferase In Complex With Sah
 pdb|3EPP|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7
          Methyltransferase (Rnmt) In Complex With Sinefungin
 pdb|3EPP|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7
          Methyltransferase (Rnmt) In Complex With Sinefungin
          Length = 313

 Score = 28.9 bits (63), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 3  SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQER 42
          +VL+LGCG            I  + C D++ V+V++ Q+R
Sbjct: 37 TVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQR 76


>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
 pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
 pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
 pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
 pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
 pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
 pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
 pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
          Length = 294

 Score = 28.9 bits (63), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 76  TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117
           T +V+  +  DP  P     T   A  EG  R L P G+F++
Sbjct: 157 TFDVIISDCTDPIGPGESLFTS--AFYEGCKRCLNPGGIFVA 196


>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
 pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
 pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
 pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
          Length = 275

 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 14  LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIE 73
           + E L +  +   T +D+    +E  ++ L     K    L+   +D+   +    +   
Sbjct: 90  IREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK----LDDPRVDVQVDDGFMHIAKS 145

Query: 74  KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117
           +   +V+ V+S +P  P     TK      G+ + LK DG+F++
Sbjct: 146 ENQYDVIMVDSTEPVGPAVNLFTK--GFYAGIAKALKEDGIFVA 187


>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
          (Apc5513)
 pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
          (Apc5513)
          Length = 200

 Score = 26.6 bits (57), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 3  SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQE 41
          SV++ G GN  L+ G Y  G  ++T  D+   A+E  + 
Sbjct: 54 SVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKR 92


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,192,696
Number of Sequences: 62578
Number of extensions: 254947
Number of successful extensions: 615
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 26
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)