Query 028957
Match_columns 201
No_of_seqs 184 out of 2494
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01209 Ubie_methyltran: ubiE 99.9 1.7E-26 3.6E-31 179.9 7.4 166 1-200 48-216 (233)
2 COG2226 UbiE Methylase involve 99.9 8.9E-27 1.9E-31 180.2 3.5 166 1-200 52-220 (238)
3 KOG1540 Ubiquinone biosynthesi 99.9 1.8E-22 3.9E-27 154.4 7.5 164 1-199 101-276 (296)
4 PLN02233 ubiquinone biosynthes 99.8 5.2E-21 1.1E-25 151.9 4.2 166 1-200 74-244 (261)
5 PF08241 Methyltransf_11: Meth 99.8 7.3E-19 1.6E-23 117.9 10.4 95 5-117 1-95 (95)
6 PF12847 Methyltransf_18: Meth 99.8 3.3E-18 7.1E-23 118.7 12.4 105 1-119 2-111 (112)
7 PF13847 Methyltransf_31: Meth 99.8 3E-18 6.6E-23 125.5 12.0 105 1-121 4-112 (152)
8 COG2227 UbiG 2-polyprenyl-3-me 99.8 8.9E-19 1.9E-23 133.9 7.8 105 1-122 60-164 (243)
9 PRK11207 tellurite resistance 99.8 1E-17 2.2E-22 127.8 13.0 104 1-119 31-134 (197)
10 PLN02396 hexaprenyldihydroxybe 99.7 1.1E-17 2.5E-22 135.8 10.9 106 1-122 132-238 (322)
11 PLN02244 tocopherol O-methyltr 99.7 2.6E-17 5.7E-22 135.3 13.1 107 1-122 119-226 (340)
12 TIGR02752 MenG_heptapren 2-hep 99.7 3.9E-17 8.4E-22 127.4 12.9 109 1-124 46-156 (231)
13 TIGR00477 tehB tellurite resis 99.7 6.9E-17 1.5E-21 123.0 12.5 104 1-120 31-134 (195)
14 PRK11036 putative S-adenosyl-L 99.7 3.8E-17 8.1E-22 129.5 10.6 106 1-122 45-152 (255)
15 PRK05785 hypothetical protein; 99.7 1.7E-18 3.6E-23 134.7 0.9 150 1-194 52-202 (226)
16 PF13649 Methyltransf_25: Meth 99.7 3.5E-17 7.5E-22 111.7 7.3 96 4-113 1-101 (101)
17 PRK00107 gidB 16S rRNA methylt 99.7 5.4E-16 1.2E-20 117.0 14.2 101 1-121 46-147 (187)
18 KOG1270 Methyltransferases [Co 99.7 3.7E-17 8E-22 126.1 7.2 103 1-122 90-198 (282)
19 PTZ00098 phosphoethanolamine N 99.7 2.9E-16 6.3E-21 124.8 12.6 107 1-122 53-159 (263)
20 PRK15451 tRNA cmo(5)U34 methyl 99.7 2.7E-16 6E-21 124.0 12.1 105 1-120 57-165 (247)
21 PRK12335 tellurite resistance 99.7 3.8E-16 8.2E-21 125.7 13.1 103 1-119 121-223 (287)
22 PRK10258 biotin biosynthesis p 99.7 1.8E-16 3.9E-21 125.2 11.1 102 1-123 43-144 (251)
23 COG2230 Cfa Cyclopropane fatty 99.7 1.2E-16 2.7E-21 126.0 9.2 110 1-126 73-183 (283)
24 PRK14103 trans-aconitate 2-met 99.7 2E-16 4.3E-21 125.3 10.3 97 1-120 30-127 (255)
25 PRK11873 arsM arsenite S-adeno 99.7 4.3E-16 9.3E-21 124.5 12.3 106 1-121 78-185 (272)
26 PRK15068 tRNA mo(5)U34 methylt 99.7 4.5E-16 9.8E-21 127.0 11.8 104 1-120 123-227 (322)
27 TIGR00091 tRNA (guanine-N(7)-) 99.7 4.8E-16 1E-20 118.3 10.8 112 2-122 18-135 (194)
28 PRK00121 trmB tRNA (guanine-N( 99.7 5.1E-16 1.1E-20 118.9 10.7 114 1-123 41-160 (202)
29 PF03848 TehB: Tellurite resis 99.7 1.1E-15 2.3E-20 115.0 12.1 104 1-120 31-134 (192)
30 TIGR00138 gidB 16S rRNA methyl 99.7 9.1E-16 2E-20 115.4 11.6 99 1-119 43-142 (181)
31 TIGR00740 methyltransferase, p 99.7 2.2E-15 4.7E-20 118.3 12.9 106 1-121 54-163 (239)
32 TIGR02072 BioC biotin biosynth 99.7 1.1E-15 2.4E-20 119.3 11.1 103 2-123 36-139 (240)
33 PF08242 Methyltransf_12: Meth 99.6 6.7E-17 1.5E-21 109.8 2.9 96 5-115 1-99 (99)
34 TIGR00452 methyltransferase, p 99.6 1.9E-15 4.1E-20 122.4 11.5 104 1-120 122-226 (314)
35 PLN02336 phosphoethanolamine N 99.6 2.6E-15 5.7E-20 128.8 12.7 105 1-121 267-371 (475)
36 PRK01683 trans-aconitate 2-met 99.6 2.6E-15 5.6E-20 119.1 11.2 98 1-119 32-130 (258)
37 PF02353 CMAS: Mycolic acid cy 99.6 2.1E-15 4.6E-20 120.1 10.6 106 1-123 63-170 (273)
38 PF05175 MTS: Methyltransferas 99.6 5.8E-15 1.3E-19 110.1 12.3 110 1-121 32-142 (170)
39 PRK14121 tRNA (guanine-N(7)-)- 99.6 4.2E-15 9.1E-20 122.6 12.6 111 2-121 124-237 (390)
40 TIGR02469 CbiT precorrin-6Y C5 99.6 1E-14 2.2E-19 102.5 12.6 101 1-119 20-122 (124)
41 PRK06922 hypothetical protein; 99.6 5.5E-15 1.2E-19 128.0 13.2 117 1-120 419-538 (677)
42 PF13489 Methyltransf_23: Meth 99.6 1.6E-15 3.6E-20 111.3 8.6 97 1-123 23-119 (161)
43 smart00828 PKS_MT Methyltransf 99.6 4.3E-15 9.3E-20 115.4 11.4 104 2-121 1-106 (224)
44 PF13659 Methyltransf_26: Meth 99.6 2.8E-15 6.2E-20 104.7 9.2 113 1-120 1-116 (117)
45 PLN02490 MPBQ/MSBQ methyltrans 99.6 4.4E-15 9.4E-20 121.3 11.3 102 1-120 114-216 (340)
46 TIGR03587 Pse_Me-ase pseudamin 99.6 9.8E-15 2.1E-19 111.8 12.0 102 1-123 44-146 (204)
47 KOG4300 Predicted methyltransf 99.6 4.5E-15 9.8E-20 110.7 9.6 106 3-123 79-186 (252)
48 TIGR00537 hemK_rel_arch HemK-r 99.6 3.3E-14 7.2E-19 106.8 13.8 119 1-123 20-144 (179)
49 PF07021 MetW: Methionine bios 99.6 5E-16 1.1E-20 115.6 3.7 145 1-197 14-160 (193)
50 PF05401 NodS: Nodulation prot 99.6 7.9E-15 1.7E-19 109.5 10.0 104 2-121 45-148 (201)
51 PRK08317 hypothetical protein; 99.6 1.7E-14 3.6E-19 112.5 12.4 104 1-120 20-125 (241)
52 TIGR03840 TMPT_Se_Te thiopurin 99.6 1.6E-14 3.4E-19 111.3 12.0 107 1-121 35-154 (213)
53 PRK00216 ubiE ubiquinone/menaq 99.6 2.5E-14 5.3E-19 111.8 12.1 108 1-123 52-162 (239)
54 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 3.1E-14 6.7E-19 110.1 12.4 106 1-123 40-147 (223)
55 TIGR01177 conserved hypothetic 99.6 8.1E-14 1.7E-18 114.3 14.8 118 1-125 183-300 (329)
56 KOG1271 Methyltransferases [Ge 99.6 1.6E-14 3.5E-19 105.8 9.3 112 3-121 70-183 (227)
57 smart00138 MeTrc Methyltransfe 99.6 1.8E-14 3.9E-19 114.5 10.4 105 2-119 101-242 (264)
58 PRK08287 cobalt-precorrin-6Y C 99.6 6E-14 1.3E-18 106.1 12.0 100 1-120 32-132 (187)
59 PRK13942 protein-L-isoaspartat 99.6 4.6E-14 1E-18 108.8 11.4 98 1-119 77-176 (212)
60 PRK13944 protein-L-isoaspartat 99.6 1.3E-13 2.9E-18 105.8 13.6 98 1-119 73-173 (205)
61 PRK06202 hypothetical protein; 99.6 5.2E-14 1.1E-18 110.0 11.5 105 1-123 61-170 (232)
62 TIGR00080 pimt protein-L-isoas 99.6 7.8E-14 1.7E-18 107.8 12.3 98 1-119 78-177 (215)
63 TIGR03533 L3_gln_methyl protei 99.6 1E-13 2.2E-18 111.4 13.3 135 2-137 123-269 (284)
64 TIGR02716 C20_methyl_CrtF C-20 99.6 6.9E-14 1.5E-18 113.6 12.5 105 1-121 150-256 (306)
65 PRK15001 SAM-dependent 23S rib 99.6 9E-14 2E-18 115.1 13.3 107 2-119 230-340 (378)
66 PLN02336 phosphoethanolamine N 99.6 5.3E-14 1.1E-18 120.8 12.3 104 1-120 38-143 (475)
67 PRK11705 cyclopropane fatty ac 99.5 5.8E-14 1.3E-18 117.1 12.0 104 1-123 168-271 (383)
68 COG0220 Predicted S-adenosylme 99.5 2.2E-14 4.8E-19 110.9 8.8 111 3-122 51-167 (227)
69 PF02390 Methyltransf_4: Putat 99.5 3.6E-14 7.9E-19 107.8 9.6 110 3-121 20-135 (195)
70 PRK09489 rsmC 16S ribosomal RN 99.5 1.7E-13 3.8E-18 112.5 13.1 107 2-121 198-305 (342)
71 TIGR00406 prmA ribosomal prote 99.5 2E-13 4.3E-18 110.0 12.9 101 1-121 160-261 (288)
72 COG2242 CobL Precorrin-6B meth 99.5 2.2E-13 4.7E-18 101.0 11.8 103 1-122 35-138 (187)
73 PRK13255 thiopurine S-methyltr 99.5 1.8E-13 3.8E-18 105.8 11.9 106 1-120 38-156 (218)
74 TIGR01983 UbiG ubiquinone bios 99.5 1.5E-13 3.2E-18 106.7 11.5 105 1-121 46-151 (224)
75 PLN03075 nicotianamine synthas 99.5 1.7E-13 3.6E-18 109.5 11.8 105 1-119 124-233 (296)
76 COG2264 PrmA Ribosomal protein 99.5 1E-13 2.2E-18 110.4 10.5 102 1-121 163-265 (300)
77 PRK00517 prmA ribosomal protei 99.5 2.4E-13 5.1E-18 107.5 12.4 96 1-122 120-216 (250)
78 TIGR02021 BchM-ChlM magnesium 99.5 2.1E-13 4.6E-18 105.6 12.0 99 1-116 56-155 (219)
79 COG4106 Tam Trans-aconitate me 99.5 4E-14 8.6E-19 106.5 7.4 99 2-121 32-131 (257)
80 KOG2361 Predicted methyltransf 99.5 9.8E-14 2.1E-18 106.0 9.5 135 3-151 74-215 (264)
81 PF03291 Pox_MCEL: mRNA cappin 99.5 1.4E-13 3.1E-18 112.2 11.1 114 1-125 63-192 (331)
82 PRK11088 rrmA 23S rRNA methylt 99.5 9.9E-14 2.2E-18 110.9 10.0 96 2-124 87-186 (272)
83 PLN02232 ubiquinone biosynthes 99.5 3E-15 6.5E-20 110.5 1.0 140 27-200 1-143 (160)
84 PRK14967 putative methyltransf 99.5 3.4E-13 7.4E-18 104.8 12.1 119 1-121 37-161 (223)
85 PF08003 Methyltransf_9: Prote 99.5 2.2E-13 4.7E-18 108.1 11.0 106 1-122 116-222 (315)
86 KOG1975 mRNA cap methyltransfe 99.5 1.3E-13 2.9E-18 109.2 9.8 113 1-124 118-242 (389)
87 PRK11805 N5-glutamine S-adenos 99.5 4.5E-13 9.8E-18 108.6 12.7 119 2-121 135-265 (307)
88 PRK11188 rrmJ 23S rRNA methylt 99.5 1.2E-13 2.7E-18 106.1 8.7 109 1-124 52-170 (209)
89 PF06325 PrmA: Ribosomal prote 99.5 2.5E-13 5.4E-18 109.0 10.4 101 1-122 162-262 (295)
90 PRK00312 pcm protein-L-isoaspa 99.5 1.1E-12 2.3E-17 101.2 13.5 98 1-120 79-176 (212)
91 PRK00377 cbiT cobalt-precorrin 99.5 5.2E-13 1.1E-17 101.9 11.7 101 1-119 41-145 (198)
92 PRK07402 precorrin-6B methylas 99.5 5E-13 1.1E-17 101.8 11.5 103 1-122 41-145 (196)
93 COG2890 HemK Methylase of poly 99.5 2.4E-12 5.1E-17 103.1 15.2 119 3-134 113-254 (280)
94 PRK05134 bifunctional 3-demeth 99.5 5.8E-13 1.3E-17 104.0 11.3 104 1-121 49-153 (233)
95 COG4123 Predicted O-methyltran 99.5 4.4E-13 9.5E-18 104.2 10.5 119 2-120 46-171 (248)
96 TIGR03534 RF_mod_PrmC protein- 99.5 1.1E-12 2.5E-17 103.3 12.1 117 2-119 89-217 (251)
97 COG2813 RsmC 16S RNA G1207 met 99.5 2E-12 4.3E-17 102.6 13.4 108 2-121 160-268 (300)
98 PRK14968 putative methyltransf 99.5 1.8E-12 3.8E-17 97.8 12.6 119 1-121 24-150 (188)
99 PRK07580 Mg-protoporphyrin IX 99.5 1.2E-12 2.5E-17 102.0 11.9 96 1-113 64-160 (230)
100 TIGR00536 hemK_fam HemK family 99.5 2E-12 4.4E-17 104.0 13.5 119 2-121 116-246 (284)
101 cd02440 AdoMet_MTases S-adenos 99.5 2.5E-12 5.4E-17 86.4 12.0 102 3-118 1-103 (107)
102 COG2518 Pcm Protein-L-isoaspar 99.4 7.1E-13 1.5E-17 100.3 9.5 98 1-120 73-170 (209)
103 PRK14904 16S rRNA methyltransf 99.4 1.6E-12 3.5E-17 110.7 12.6 121 1-122 251-380 (445)
104 PRK14966 unknown domain/N5-glu 99.4 2.7E-12 5.9E-17 106.8 13.5 117 2-119 253-381 (423)
105 TIGR03438 probable methyltrans 99.4 2.2E-12 4.9E-17 104.5 11.9 106 1-119 64-177 (301)
106 PRK14901 16S rRNA methyltransf 99.4 2.4E-12 5.2E-17 109.3 12.1 122 1-122 253-387 (434)
107 PRK04266 fibrillarin; Provisio 99.4 3.9E-12 8.4E-17 98.8 12.3 98 1-118 73-175 (226)
108 TIGR00446 nop2p NOL1/NOP2/sun 99.4 3E-12 6.5E-17 101.9 11.9 122 1-122 72-202 (264)
109 PRK13256 thiopurine S-methyltr 99.4 3.7E-12 8E-17 98.5 11.5 107 1-121 44-165 (226)
110 PRK10901 16S rRNA methyltransf 99.4 5.5E-12 1.2E-16 106.9 13.6 120 1-121 245-374 (427)
111 PRK09328 N5-glutamine S-adenos 99.4 5.9E-12 1.3E-16 100.6 13.0 118 1-119 109-238 (275)
112 PRK15128 23S rRNA m(5)C1962 me 99.4 3.1E-12 6.7E-17 107.0 11.7 111 1-122 221-342 (396)
113 PLN02585 magnesium protoporphy 99.4 4.2E-12 9E-17 103.1 12.0 98 1-116 145-247 (315)
114 PF01135 PCMT: Protein-L-isoas 99.4 1E-12 2.2E-17 100.7 8.0 99 1-120 73-173 (209)
115 PRK11783 rlmL 23S rRNA m(2)G24 99.4 4.1E-12 8.9E-17 113.5 12.5 111 1-122 539-659 (702)
116 PRK14903 16S rRNA methyltransf 99.4 3.4E-12 7.5E-17 108.0 11.3 122 1-122 238-369 (431)
117 PRK13943 protein-L-isoaspartat 99.4 1.9E-11 4.2E-16 99.5 15.2 98 1-119 81-180 (322)
118 TIGR00563 rsmB ribosomal RNA s 99.4 7.6E-12 1.6E-16 106.0 13.0 121 1-122 239-371 (426)
119 TIGR00438 rrmJ cell division p 99.4 3.5E-12 7.5E-17 96.6 9.4 107 1-123 33-150 (188)
120 TIGR03704 PrmC_rel_meth putati 99.4 1.4E-11 3.1E-16 97.3 13.1 106 2-121 88-218 (251)
121 PRK14902 16S rRNA methyltransf 99.4 1E-11 2.2E-16 105.8 12.9 120 1-121 251-381 (444)
122 PRK01544 bifunctional N5-gluta 99.4 1E-11 2.2E-16 107.1 12.8 116 2-118 140-268 (506)
123 PRK10909 rsmD 16S rRNA m(2)G96 99.4 5.2E-11 1.1E-15 90.7 15.1 104 1-120 54-160 (199)
124 COG1041 Predicted DNA modifica 99.3 2.9E-11 6.3E-16 97.7 13.8 108 1-120 198-311 (347)
125 PRK00811 spermidine synthase; 99.3 1.5E-11 3.2E-16 98.9 12.0 107 1-118 77-190 (283)
126 PF00891 Methyltransf_2: O-met 99.3 8.3E-12 1.8E-16 98.1 10.1 97 2-121 102-201 (241)
127 TIGR02081 metW methionine bios 99.3 4.9E-12 1.1E-16 96.2 8.4 89 1-111 14-104 (194)
128 COG2519 GCD14 tRNA(1-methylade 99.3 7.8E-12 1.7E-16 96.7 8.8 105 1-126 95-202 (256)
129 PF05891 Methyltransf_PK: AdoM 99.3 1.3E-11 2.8E-16 93.8 9.6 107 2-121 57-163 (218)
130 KOG1541 Predicted protein carb 99.3 2.1E-11 4.6E-16 92.2 10.5 110 2-121 52-162 (270)
131 PRK01544 bifunctional N5-gluta 99.3 1.2E-11 2.7E-16 106.6 10.4 112 2-122 349-465 (506)
132 smart00650 rADc Ribosomal RNA 99.3 2.8E-11 6E-16 90.1 11.0 75 1-78 14-88 (169)
133 PRK04457 spermidine synthase; 99.3 2.3E-11 5.1E-16 96.6 9.9 111 1-122 67-180 (262)
134 PTZ00146 fibrillarin; Provisio 99.3 5.2E-11 1.1E-15 94.9 11.5 99 1-118 133-236 (293)
135 KOG3010 Methyltransferase [Gen 99.3 5.3E-12 1.2E-16 96.6 5.4 99 3-118 36-135 (261)
136 PHA03411 putative methyltransf 99.3 7.4E-11 1.6E-15 93.2 11.7 117 2-124 66-188 (279)
137 PF05724 TPMT: Thiopurine S-me 99.3 2.5E-11 5.4E-16 93.8 8.7 105 2-120 39-156 (218)
138 COG1092 Predicted SAM-dependen 99.3 5.8E-11 1.3E-15 98.4 10.8 113 1-124 218-341 (393)
139 PF03602 Cons_hypoth95: Conser 99.3 1.5E-10 3.3E-15 87.1 12.1 106 1-122 43-156 (183)
140 PLN02781 Probable caffeoyl-CoA 99.2 1.1E-10 2.5E-15 91.2 11.8 100 1-118 69-177 (234)
141 TIGR00095 RNA methyltransferas 99.2 7.5E-10 1.6E-14 83.9 15.5 104 1-120 50-160 (189)
142 COG2263 Predicted RNA methylas 99.2 6.6E-11 1.4E-15 87.7 8.8 73 1-77 46-118 (198)
143 KOG2899 Predicted methyltransf 99.2 7.5E-11 1.6E-15 90.3 9.3 109 1-118 59-208 (288)
144 KOG2352 Predicted spermine/spe 99.2 1.3E-10 2.8E-15 97.2 11.5 156 3-164 51-208 (482)
145 PLN02672 methionine S-methyltr 99.2 2.1E-10 4.6E-15 105.2 13.3 142 2-143 120-304 (1082)
146 KOG1499 Protein arginine N-met 99.2 5.9E-11 1.3E-15 95.6 8.5 103 1-116 61-164 (346)
147 PLN02366 spermidine synthase 99.2 2.9E-10 6.3E-15 92.1 12.0 107 1-118 92-205 (308)
148 PF08704 GCD14: tRNA methyltra 99.2 1.7E-10 3.7E-15 90.4 10.1 103 1-123 41-150 (247)
149 PF10294 Methyltransf_16: Puta 99.2 1.6E-10 3.4E-15 86.4 9.5 106 1-122 46-159 (173)
150 PRK13168 rumA 23S rRNA m(5)U19 99.2 2.1E-10 4.5E-15 97.7 11.2 99 1-119 298-400 (443)
151 PF05219 DREV: DREV methyltran 99.2 1.4E-10 3.1E-15 90.2 8.4 92 2-118 96-187 (265)
152 PF10672 Methyltrans_SAM: S-ad 99.2 1.6E-10 3.6E-15 92.3 9.0 112 1-123 124-242 (286)
153 TIGR00417 speE spermidine synt 99.2 2.7E-10 5.8E-15 91.0 10.2 108 1-119 73-186 (270)
154 PRK03522 rumB 23S rRNA methylu 99.2 2.2E-10 4.9E-15 93.4 9.9 73 1-74 174-247 (315)
155 PHA03412 putative methyltransf 99.2 3.7E-10 8.1E-15 87.3 10.3 105 1-114 50-158 (241)
156 PRK01581 speE spermidine synth 99.1 4.2E-10 9.1E-15 92.2 10.8 109 1-119 151-268 (374)
157 PF01596 Methyltransf_3: O-met 99.1 4.2E-10 9.2E-15 86.1 9.7 100 1-118 46-154 (205)
158 PLN02476 O-methyltransferase 99.1 7.6E-10 1.6E-14 88.1 11.4 100 1-118 119-227 (278)
159 PRK03612 spermidine synthase; 99.1 4.2E-10 9.1E-15 97.6 10.4 109 1-119 298-415 (521)
160 COG4122 Predicted O-methyltran 99.1 5.1E-10 1.1E-14 85.9 9.4 100 1-118 60-165 (219)
161 COG3963 Phospholipid N-methylt 99.1 2.9E-09 6.4E-14 77.3 12.5 103 1-121 49-158 (194)
162 COG0742 N6-adenine-specific me 99.1 7.9E-09 1.7E-13 77.2 15.1 107 1-121 44-156 (187)
163 KOG3191 Predicted N6-DNA-methy 99.1 6.5E-09 1.4E-13 76.5 14.2 137 2-143 45-194 (209)
164 PF06080 DUF938: Protein of un 99.1 8.6E-10 1.9E-14 83.5 9.4 105 3-120 28-142 (204)
165 TIGR02085 meth_trns_rumB 23S r 99.1 9.8E-10 2.1E-14 91.7 10.3 104 1-124 234-338 (374)
166 PLN02823 spermine synthase 99.0 3.2E-09 6.9E-14 87.0 10.8 109 1-118 104-219 (336)
167 PF01170 UPF0020: Putative RNA 99.0 4.1E-09 8.9E-14 79.2 10.6 106 1-118 29-149 (179)
168 KOG2904 Predicted methyltransf 99.0 8.1E-09 1.7E-13 80.7 12.2 108 2-120 150-286 (328)
169 PRK11933 yebU rRNA (cytosine-C 99.0 3.2E-09 6.9E-14 90.5 10.9 120 1-121 114-244 (470)
170 PF01739 CheR: CheR methyltran 99.0 2E-09 4.4E-14 81.7 8.7 103 3-118 34-174 (196)
171 TIGR00479 rumA 23S rRNA (uraci 99.0 2.8E-09 6.1E-14 90.6 10.3 72 1-73 293-368 (431)
172 TIGR00478 tly hemolysin TlyA f 99.0 3.5E-09 7.6E-14 82.2 8.6 90 1-119 76-171 (228)
173 PRK14896 ksgA 16S ribosomal RN 99.0 3.7E-09 8.1E-14 83.9 8.8 72 1-77 30-101 (258)
174 KOG3178 Hydroxyindole-O-methyl 98.9 5.5E-09 1.2E-13 84.4 9.3 102 2-124 179-280 (342)
175 KOG1500 Protein arginine N-met 98.9 5.8E-09 1.2E-13 83.7 9.3 101 1-116 178-279 (517)
176 PLN02589 caffeoyl-CoA O-methyl 98.9 5.9E-09 1.3E-13 81.9 9.3 99 1-117 80-188 (247)
177 PRK10611 chemotaxis methyltran 98.9 4.6E-09 9.9E-14 84.2 8.7 103 3-118 118-261 (287)
178 PF05148 Methyltransf_8: Hypot 98.9 7.7E-09 1.7E-13 78.2 9.1 124 2-158 74-199 (219)
179 KOG2940 Predicted methyltransf 98.9 8.1E-10 1.8E-14 84.2 3.9 104 2-122 74-177 (325)
180 PRK00274 ksgA 16S ribosomal RN 98.9 9.4E-09 2E-13 82.2 10.2 72 1-76 43-114 (272)
181 KOG3420 Predicted RNA methylas 98.9 1.8E-09 4E-14 76.6 5.2 76 1-77 49-124 (185)
182 PF05185 PRMT5: PRMT5 arginine 98.9 6.6E-09 1.4E-13 88.3 9.6 101 2-116 188-294 (448)
183 KOG1661 Protein-L-isoaspartate 98.9 6.3E-09 1.4E-13 78.3 7.9 97 1-118 83-192 (237)
184 COG4976 Predicted methyltransf 98.9 3.5E-10 7.6E-15 86.1 1.1 99 2-121 127-227 (287)
185 PF02527 GidB: rRNA small subu 98.9 1.4E-08 2.9E-13 76.5 9.7 97 3-119 51-148 (184)
186 PTZ00338 dimethyladenosine tra 98.9 5.8E-09 1.3E-13 84.1 8.1 74 1-77 37-111 (294)
187 TIGR00755 ksgA dimethyladenosi 98.9 1.5E-08 3.4E-13 80.2 10.3 72 1-77 30-104 (253)
188 COG0144 Sun tRNA and rRNA cyto 98.9 4.4E-08 9.6E-13 81.1 13.3 122 1-122 157-291 (355)
189 COG2520 Predicted methyltransf 98.9 1.4E-08 3.1E-13 82.8 10.0 105 1-124 189-294 (341)
190 COG2521 Predicted archaeal met 98.9 4.2E-09 9.2E-14 80.5 5.7 109 1-121 135-247 (287)
191 PRK04338 N(2),N(2)-dimethylgua 98.9 1.3E-08 2.8E-13 84.9 9.0 98 2-118 59-157 (382)
192 PF02475 Met_10: Met-10+ like- 98.9 1.6E-08 3.5E-13 77.0 8.7 96 1-116 102-199 (200)
193 PF12147 Methyltransf_20: Puta 98.8 7E-08 1.5E-12 76.4 11.9 105 2-118 137-248 (311)
194 PRK05031 tRNA (uracil-5-)-meth 98.8 1.9E-08 4.1E-13 83.6 9.0 58 2-60 208-265 (362)
195 TIGR02143 trmA_only tRNA (urac 98.8 2.4E-08 5.2E-13 82.7 9.0 58 2-60 199-256 (353)
196 PF09445 Methyltransf_15: RNA 98.8 1.3E-08 2.9E-13 74.7 5.8 71 2-73 1-75 (163)
197 COG1352 CheR Methylase of chem 98.8 9.5E-08 2E-12 75.8 10.6 104 2-118 98-240 (268)
198 PF04816 DUF633: Family of unk 98.8 4.4E-07 9.5E-12 69.5 13.9 140 4-161 1-143 (205)
199 COG0421 SpeE Spermidine syntha 98.8 8.5E-08 1.8E-12 76.7 10.1 106 2-118 78-189 (282)
200 KOG3045 Predicted RNA methylas 98.7 3.9E-08 8.4E-13 76.4 7.4 119 3-156 183-303 (325)
201 PF01564 Spermine_synth: Sperm 98.7 3.4E-08 7.3E-13 77.8 7.2 108 1-119 77-191 (246)
202 PRK04148 hypothetical protein; 98.7 2.5E-07 5.4E-12 65.7 10.9 95 1-123 17-113 (134)
203 TIGR00308 TRM1 tRNA(guanine-26 98.7 5.7E-08 1.2E-12 80.8 8.6 98 2-118 46-146 (374)
204 PRK11727 23S rRNA mA1618 methy 98.7 1.1E-07 2.5E-12 77.3 8.8 78 2-79 116-201 (321)
205 COG0357 GidB Predicted S-adeno 98.7 1.3E-07 2.8E-12 72.5 8.4 98 1-117 68-166 (215)
206 PRK00536 speE spermidine synth 98.7 2.8E-07 6.1E-12 72.9 10.6 95 1-119 73-171 (262)
207 COG4076 Predicted RNA methylas 98.7 3.5E-08 7.5E-13 73.2 5.0 99 2-116 34-132 (252)
208 COG2265 TrmA SAM-dependent met 98.6 1.9E-07 4E-12 79.1 9.1 71 2-73 295-368 (432)
209 COG0030 KsgA Dimethyladenosine 98.6 1.5E-07 3.4E-12 73.9 8.0 74 1-77 31-105 (259)
210 PRK11783 rlmL 23S rRNA m(2)G24 98.6 6E-07 1.3E-11 80.7 12.6 111 1-122 191-350 (702)
211 KOG0820 Ribosomal RNA adenine 98.6 2.2E-07 4.9E-12 72.7 8.1 73 1-76 59-132 (315)
212 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 2.5E-07 5.4E-12 72.9 8.4 109 1-120 57-200 (256)
213 PF01728 FtsJ: FtsJ-like methy 98.6 4.6E-08 9.9E-13 73.5 3.6 109 2-125 25-145 (181)
214 KOG1663 O-methyltransferase [S 98.6 1.3E-06 2.7E-11 67.0 10.8 100 1-118 74-182 (237)
215 COG3897 Predicted methyltransf 98.5 3.8E-07 8.2E-12 68.1 7.6 104 1-124 80-184 (218)
216 TIGR03439 methyl_EasF probable 98.5 1.4E-06 2.9E-11 71.1 11.5 104 2-118 78-196 (319)
217 PF09243 Rsm22: Mitochondrial 98.5 5.4E-07 1.2E-11 72.2 9.1 108 1-123 34-143 (274)
218 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.5 1.3E-07 2.9E-12 75.9 5.6 121 1-121 86-221 (283)
219 COG0116 Predicted N6-adenine-s 98.5 1.6E-06 3.5E-11 71.4 11.5 108 2-120 193-345 (381)
220 PF02384 N6_Mtase: N-6 DNA Met 98.5 9.5E-07 2.1E-11 71.9 9.9 118 2-120 48-184 (311)
221 PF03141 Methyltransf_29: Puta 98.5 5.7E-08 1.2E-12 82.0 2.2 99 2-120 119-220 (506)
222 TIGR02987 met_A_Alw26 type II 98.5 1.4E-06 3.1E-11 75.9 10.3 73 2-74 33-119 (524)
223 KOG1331 Predicted methyltransf 98.5 1.6E-07 3.4E-12 74.0 3.8 99 1-121 46-145 (293)
224 COG0293 FtsJ 23S rRNA methylas 98.5 1.8E-06 3.9E-11 65.5 9.3 111 1-126 46-166 (205)
225 PF05958 tRNA_U5-meth_tr: tRNA 98.4 1.2E-06 2.7E-11 72.5 7.6 58 2-60 198-255 (352)
226 PF07942 N2227: N2227-like pro 98.4 3.9E-06 8.4E-11 66.6 10.0 101 2-118 58-201 (270)
227 KOG2915 tRNA(1-methyladenosine 98.4 5.6E-06 1.2E-10 65.0 10.2 94 1-114 106-204 (314)
228 COG0500 SmtA SAM-dependent met 98.3 1.5E-05 3.3E-10 56.7 11.6 103 4-123 52-159 (257)
229 KOG3115 Methyltransferase-like 98.3 1.9E-06 4E-11 64.8 6.3 111 3-119 63-183 (249)
230 PRK00050 16S rRNA m(4)C1402 me 98.3 1.9E-06 4.1E-11 69.4 6.6 72 1-74 20-97 (296)
231 PF00398 RrnaAD: Ribosomal RNA 98.2 7.6E-06 1.6E-10 65.2 9.0 73 1-76 31-106 (262)
232 KOG3987 Uncharacterized conser 98.2 1.5E-07 3.3E-12 70.8 -0.7 92 1-118 113-206 (288)
233 TIGR01444 fkbM_fam methyltrans 98.2 6E-06 1.3E-10 59.3 7.5 58 3-60 1-59 (143)
234 PF08123 DOT1: Histone methyla 98.2 3.8E-06 8.2E-11 64.3 6.6 101 1-117 43-156 (205)
235 KOG2730 Methylase [General fun 98.2 1.8E-06 3.8E-11 65.7 4.2 97 2-114 96-197 (263)
236 KOG1122 tRNA and rRNA cytosine 98.1 3E-05 6.5E-10 64.3 10.7 121 1-122 242-374 (460)
237 PRK11760 putative 23S rRNA C24 98.1 1.3E-05 2.9E-10 65.3 8.5 68 1-76 212-279 (357)
238 COG1189 Predicted rRNA methyla 98.1 1.5E-05 3.3E-10 61.5 8.0 95 1-119 80-178 (245)
239 COG4262 Predicted spermidine s 98.1 4.7E-05 1E-09 62.3 10.7 109 2-120 291-408 (508)
240 KOG1269 SAM-dependent methyltr 98.1 5.6E-06 1.2E-10 68.6 5.4 105 2-121 112-217 (364)
241 KOG3201 Uncharacterized conser 98.1 2.2E-06 4.8E-11 62.2 2.6 116 1-131 30-152 (201)
242 PF01269 Fibrillarin: Fibrilla 98.1 8.1E-05 1.7E-09 57.1 11.2 100 1-119 74-178 (229)
243 PF01861 DUF43: Protein of unk 98.1 0.00014 3E-09 56.6 12.0 104 1-122 45-151 (243)
244 COG2384 Predicted SAM-dependen 98.0 0.0002 4.4E-09 54.8 12.7 141 2-159 18-160 (226)
245 PF03059 NAS: Nicotianamine sy 98.0 6.1E-05 1.3E-09 60.1 10.3 104 2-119 122-230 (276)
246 KOG1709 Guanidinoacetate methy 98.0 4.7E-05 1E-09 58.0 8.9 102 1-118 102-205 (271)
247 PF13679 Methyltransf_32: Meth 98.0 7.3E-05 1.6E-09 53.9 9.2 75 2-80 27-109 (141)
248 COG5459 Predicted rRNA methyla 98.0 2E-05 4.4E-10 64.0 6.2 111 1-124 114-230 (484)
249 PF06962 rRNA_methylase: Putat 97.9 0.00015 3.3E-09 51.9 9.1 92 25-122 1-95 (140)
250 KOG2187 tRNA uracil-5-methyltr 97.9 1.2E-05 2.7E-10 68.1 4.0 58 2-60 385-442 (534)
251 PF11968 DUF3321: Putative met 97.9 6.1E-05 1.3E-09 57.6 7.2 91 2-121 53-151 (219)
252 PF04672 Methyltransf_19: S-ad 97.9 9.2E-05 2E-09 58.6 8.2 108 3-122 71-193 (267)
253 PRK10742 putative methyltransf 97.8 0.00022 4.8E-09 55.8 9.7 70 3-73 91-170 (250)
254 KOG4589 Cell division protein 97.8 0.00017 3.7E-09 53.8 8.1 108 1-123 70-188 (232)
255 COG4798 Predicted methyltransf 97.7 0.00023 4.9E-09 53.5 7.6 112 1-121 49-168 (238)
256 PF11599 AviRa: RRNA methyltra 97.7 0.00062 1.3E-08 51.9 10.0 111 2-119 53-213 (246)
257 PF13578 Methyltransf_24: Meth 97.7 2.4E-05 5.2E-10 53.4 2.3 97 5-118 1-104 (106)
258 COG1889 NOP1 Fibrillarin-like 97.7 0.00073 1.6E-08 51.1 10.1 99 1-118 77-179 (231)
259 KOG2198 tRNA cytosine-5-methyl 97.5 0.0021 4.6E-08 52.8 11.2 122 1-122 156-299 (375)
260 TIGR00006 S-adenosyl-methyltra 97.3 0.001 2.2E-08 53.9 7.5 72 1-73 21-98 (305)
261 PF05971 Methyltransf_10: Prot 97.3 0.0012 2.5E-08 53.3 7.8 78 2-79 104-189 (299)
262 KOG4058 Uncharacterized conser 97.3 0.0033 7.2E-08 45.3 9.0 103 2-124 74-177 (199)
263 PHA01634 hypothetical protein 97.3 0.0021 4.5E-08 45.1 7.3 47 1-47 29-75 (156)
264 KOG1099 SAM-dependent methyltr 97.2 0.00058 1.3E-08 52.6 4.9 105 2-121 43-165 (294)
265 PF07091 FmrO: Ribosomal RNA m 97.2 0.0017 3.8E-08 50.8 7.5 78 1-80 106-184 (251)
266 KOG1562 Spermidine synthase [A 97.2 0.0018 3.8E-08 51.8 7.5 108 1-119 122-236 (337)
267 PF04989 CmcI: Cephalosporin h 97.2 0.0013 2.7E-08 50.3 6.1 102 1-120 33-148 (206)
268 COG1568 Predicted methyltransf 97.2 0.0044 9.5E-08 49.2 9.0 102 1-120 153-261 (354)
269 cd00315 Cyt_C5_DNA_methylase C 97.1 0.0015 3.2E-08 52.5 6.4 66 3-74 2-69 (275)
270 KOG0024 Sorbitol dehydrogenase 97.1 0.0024 5.3E-08 51.7 7.3 105 1-130 170-284 (354)
271 KOG1596 Fibrillarin and relate 97.1 0.0065 1.4E-07 47.3 9.2 103 1-119 157-261 (317)
272 KOG2793 Putative N2,N2-dimethy 97.0 0.015 3.2E-07 45.8 11.1 106 2-123 88-203 (248)
273 PF03492 Methyltransf_7: SAM d 97.0 0.0066 1.4E-07 50.1 9.2 122 3-124 19-188 (334)
274 PF04445 SAM_MT: Putative SAM- 96.9 0.0032 7E-08 49.0 6.3 71 2-73 77-157 (234)
275 PF03141 Methyltransf_29: Puta 96.9 0.0012 2.6E-08 56.4 4.2 122 2-145 367-492 (506)
276 COG1063 Tdh Threonine dehydrog 96.9 0.003 6.5E-08 52.4 6.5 99 2-124 170-274 (350)
277 PF02005 TRM: N2,N2-dimethylgu 96.9 0.006 1.3E-07 51.1 8.1 98 3-119 52-154 (377)
278 KOG2798 Putative trehalase [Ca 96.8 0.0043 9.4E-08 50.0 6.7 101 2-118 152-295 (369)
279 KOG1501 Arginine N-methyltrans 96.7 0.0035 7.6E-08 52.7 5.4 53 3-55 69-122 (636)
280 PF06859 Bin3: Bicoid-interact 96.6 0.00094 2E-08 45.6 1.4 43 67-118 1-43 (110)
281 PRK11524 putative methyltransf 96.6 0.0049 1.1E-07 49.7 5.8 44 1-45 209-252 (284)
282 PLN02668 indole-3-acetate carb 96.6 0.025 5.5E-07 47.4 9.8 122 3-124 66-242 (386)
283 COG0286 HsdM Type I restrictio 96.6 0.034 7.3E-07 48.3 10.8 120 2-121 188-328 (489)
284 KOG1227 Putative methyltransfe 96.5 0.0015 3.4E-08 52.2 1.9 71 2-73 196-268 (351)
285 PRK09880 L-idonate 5-dehydroge 96.3 0.017 3.8E-07 47.5 7.4 95 1-120 170-267 (343)
286 KOG2671 Putative RNA methylase 96.3 0.012 2.5E-07 48.2 6.0 72 1-73 209-290 (421)
287 COG4627 Uncharacterized protei 96.3 0.0013 2.9E-08 47.6 0.5 58 51-121 31-88 (185)
288 PRK13699 putative methylase; P 96.2 0.014 3.1E-07 45.5 5.9 45 1-46 164-208 (227)
289 PF00145 DNA_methylase: C-5 cy 96.2 0.01 2.2E-07 48.3 5.2 63 3-73 2-67 (335)
290 COG1064 AdhP Zn-dependent alco 96.1 0.042 9E-07 45.3 8.4 92 1-121 167-261 (339)
291 PF03269 DUF268: Caenorhabditi 96.1 0.0065 1.4E-07 44.4 3.2 110 1-122 2-114 (177)
292 PRK09424 pntA NAD(P) transhydr 96.0 0.051 1.1E-06 47.3 9.1 96 1-120 165-286 (509)
293 KOG0822 Protein kinase inhibit 96.0 0.013 2.9E-07 50.4 5.2 102 3-117 370-476 (649)
294 PF01795 Methyltransf_5: MraW 96.0 0.02 4.3E-07 46.6 5.8 71 2-73 22-99 (310)
295 COG1867 TRM1 N2,N2-dimethylgua 95.9 0.032 7E-07 46.1 6.9 100 1-119 53-154 (380)
296 COG4301 Uncharacterized conser 95.9 0.17 3.6E-06 39.9 10.3 105 1-118 79-192 (321)
297 TIGR01202 bchC 2-desacetyl-2-h 95.3 0.096 2.1E-06 42.5 7.8 87 1-121 145-233 (308)
298 KOG2539 Mitochondrial/chloropl 95.2 0.044 9.6E-07 46.6 5.6 110 2-124 202-320 (491)
299 PF02636 Methyltransf_28: Puta 95.1 0.033 7.2E-07 44.0 4.3 44 2-45 20-72 (252)
300 COG0275 Predicted S-adenosylme 95.0 0.13 2.8E-06 41.6 7.4 59 2-61 25-85 (314)
301 cd08230 glucose_DH Glucose deh 95.0 0.18 3.9E-06 41.7 8.6 94 1-121 173-271 (355)
302 COG1565 Uncharacterized conser 94.9 0.068 1.5E-06 44.2 5.6 45 2-46 79-132 (370)
303 PRK13699 putative methylase; P 94.9 0.053 1.2E-06 42.3 4.8 56 52-118 3-71 (227)
304 PF07757 AdoMet_MTase: Predict 94.8 0.022 4.8E-07 38.7 2.2 30 3-33 61-90 (112)
305 PRK11524 putative methyltransf 94.8 0.061 1.3E-06 43.3 5.1 69 50-119 8-80 (284)
306 KOG2920 Predicted methyltransf 94.7 0.028 6E-07 44.8 2.8 37 1-37 117-153 (282)
307 TIGR00675 dcm DNA-methyltransf 94.7 0.056 1.2E-06 44.3 4.7 65 4-74 1-66 (315)
308 cd08237 ribitol-5-phosphate_DH 94.6 0.26 5.7E-06 40.6 8.6 92 1-121 164-258 (341)
309 PTZ00357 methyltransferase; Pr 94.4 0.2 4.2E-06 45.1 7.6 96 3-111 703-823 (1072)
310 COG0270 Dcm Site-specific DNA 94.2 0.13 2.7E-06 42.4 5.9 68 2-74 4-74 (328)
311 PF11312 DUF3115: Protein of u 94.1 0.11 2.3E-06 42.3 5.0 109 2-120 88-243 (315)
312 COG3510 CmcI Cephalosporin hyd 94.1 0.29 6.3E-06 37.1 6.8 101 1-121 70-182 (237)
313 PF10354 DUF2431: Domain of un 94.0 0.52 1.1E-05 34.9 8.1 113 7-123 3-129 (166)
314 PRK10458 DNA cytosine methylas 94.0 0.21 4.5E-06 43.2 6.8 58 2-61 89-146 (467)
315 cd08283 FDH_like_1 Glutathione 93.9 0.29 6.4E-06 41.0 7.7 113 1-120 185-307 (386)
316 TIGR03366 HpnZ_proposed putati 93.9 0.2 4.4E-06 39.9 6.4 94 1-120 121-219 (280)
317 cd08254 hydroxyacyl_CoA_DH 6-h 93.8 0.82 1.8E-05 37.0 9.8 94 1-120 166-264 (338)
318 KOG1253 tRNA methyltransferase 93.7 0.057 1.2E-06 46.2 2.9 99 2-119 111-216 (525)
319 PF02254 TrkA_N: TrkA-N domain 93.6 1.2 2.5E-05 30.3 9.0 88 9-121 4-98 (116)
320 TIGR03451 mycoS_dep_FDH mycoth 93.4 0.18 4E-06 41.7 5.4 95 1-120 177-277 (358)
321 TIGR00561 pntA NAD(P) transhyd 93.3 0.22 4.7E-06 43.5 5.9 40 1-41 164-205 (511)
322 PF11899 DUF3419: Protein of u 93.2 0.23 5E-06 41.8 5.7 64 48-124 274-339 (380)
323 COG3129 Predicted SAM-dependen 92.9 0.29 6.2E-06 38.2 5.3 78 2-79 80-165 (292)
324 KOG2078 tRNA modification enzy 92.9 0.097 2.1E-06 44.1 3.0 59 1-60 250-310 (495)
325 TIGR02822 adh_fam_2 zinc-bindi 92.9 1.5 3.2E-05 36.0 10.0 88 1-120 166-255 (329)
326 KOG2352 Predicted spermine/spe 92.7 0.22 4.7E-06 42.7 4.9 112 2-120 297-417 (482)
327 KOG2651 rRNA adenine N-6-methy 92.6 0.24 5.1E-06 41.4 4.8 40 2-41 155-194 (476)
328 cd05188 MDR Medium chain reduc 92.6 0.54 1.2E-05 36.6 6.8 94 1-121 135-234 (271)
329 TIGR00497 hsdM type I restrict 92.6 1.6 3.5E-05 38.2 10.2 116 2-118 219-354 (501)
330 cd00401 AdoHcyase S-adenosyl-L 92.6 0.82 1.8E-05 38.9 8.2 87 1-121 202-291 (413)
331 COG0686 Ald Alanine dehydrogen 92.5 0.38 8.3E-06 39.2 5.8 99 2-119 169-268 (371)
332 cd08281 liver_ADH_like1 Zinc-d 92.4 0.34 7.3E-06 40.3 5.7 95 1-120 192-291 (371)
333 PF00107 ADH_zinc_N: Zinc-bind 92.4 0.7 1.5E-05 32.0 6.6 85 11-122 2-92 (130)
334 PRK10309 galactitol-1-phosphat 92.3 0.46 9.9E-06 39.0 6.3 96 1-121 161-262 (347)
335 PF02737 3HCDH_N: 3-hydroxyacy 92.2 1.8 3.9E-05 32.4 8.8 96 3-120 1-115 (180)
336 cd08239 THR_DH_like L-threonin 91.4 0.69 1.5E-05 37.8 6.4 95 1-120 164-263 (339)
337 cd08232 idonate-5-DH L-idonate 91.4 0.94 2E-05 36.9 7.2 92 1-119 166-262 (339)
338 KOG0821 Predicted ribosomal RN 90.8 0.39 8.5E-06 37.2 4.0 59 2-61 52-110 (326)
339 PLN02740 Alcohol dehydrogenase 90.7 1.8 3.9E-05 36.2 8.3 95 1-120 199-301 (381)
340 TIGR00027 mthyl_TIGR00027 meth 90.1 6.2 0.00014 31.4 10.6 104 3-121 84-199 (260)
341 PRK07819 3-hydroxybutyryl-CoA 90.1 2.8 6.1E-05 33.8 8.7 95 3-119 7-121 (286)
342 PLN02586 probable cinnamyl alc 90.0 1.3 2.9E-05 36.7 6.9 93 1-120 184-279 (360)
343 PF05711 TylF: Macrocin-O-meth 89.9 1.2 2.7E-05 35.2 6.2 104 2-122 76-215 (248)
344 PRK05476 S-adenosyl-L-homocyst 89.9 2.5 5.4E-05 36.2 8.5 88 1-122 212-302 (425)
345 PF05206 TRM13: Methyltransfer 89.7 0.65 1.4E-05 37.0 4.6 60 2-62 20-86 (259)
346 KOG1098 Putative SAM-dependent 89.6 0.27 5.8E-06 43.5 2.5 103 2-120 46-159 (780)
347 PLN02827 Alcohol dehydrogenase 89.5 2.7 5.9E-05 35.2 8.5 95 1-120 194-296 (378)
348 PRK05708 2-dehydropantoate 2-r 89.3 5 0.00011 32.6 9.7 100 2-121 3-106 (305)
349 PRK09260 3-hydroxybutyryl-CoA 89.2 2.7 5.9E-05 33.8 8.0 40 2-42 2-43 (288)
350 PRK03659 glutathione-regulated 89.0 2.5 5.3E-05 37.9 8.2 93 3-123 402-502 (601)
351 COG1748 LYS9 Saccharopine dehy 89.0 1.9 4.2E-05 36.3 7.1 69 1-73 1-74 (389)
352 cd08285 NADP_ADH NADP(H)-depen 88.8 4.6 0.0001 33.1 9.3 95 1-120 167-267 (351)
353 cd08238 sorbose_phosphate_red 88.5 3.6 7.8E-05 34.8 8.6 42 1-42 176-222 (410)
354 PRK03562 glutathione-regulated 88.3 3.9 8.5E-05 36.8 9.0 64 2-73 401-470 (621)
355 PLN03154 putative allyl alcoho 88.1 2.6 5.6E-05 34.8 7.4 94 1-120 159-259 (348)
356 TIGR02819 fdhA_non_GSH formald 87.6 5.5 0.00012 33.6 9.1 110 1-121 186-301 (393)
357 COG0863 DNA modification methy 87.5 1.6 3.4E-05 35.0 5.7 45 1-46 223-267 (302)
358 COG2933 Predicted SAM-dependen 87.4 2.2 4.7E-05 34.1 6.0 66 1-74 212-277 (358)
359 PRK08293 3-hydroxybutyryl-CoA 87.2 2.6 5.7E-05 33.9 6.7 94 2-116 4-117 (287)
360 KOG1201 Hydroxysteroid 17-beta 87.2 3.2 6.9E-05 33.7 7.0 74 1-77 38-124 (300)
361 PRK11730 fadB multifunctional 86.8 6.8 0.00015 35.9 9.8 97 2-120 314-429 (715)
362 TIGR02437 FadB fatty oxidation 86.8 5.8 0.00013 36.4 9.3 96 2-119 314-428 (714)
363 PRK08265 short chain dehydroge 86.8 10 0.00022 29.6 9.8 69 2-76 7-89 (261)
364 PLN02514 cinnamyl-alcohol dehy 86.7 4 8.6E-05 33.8 7.7 94 1-120 181-276 (357)
365 cd08234 threonine_DH_like L-th 86.5 7.7 0.00017 31.3 9.3 93 1-120 160-258 (334)
366 PRK07066 3-hydroxybutyryl-CoA 86.4 6.3 0.00014 32.5 8.5 91 2-113 8-113 (321)
367 PRK07533 enoyl-(acyl carrier p 86.4 14 0.0003 28.9 10.7 74 1-77 10-98 (258)
368 PRK08324 short chain dehydroge 86.3 7.7 0.00017 35.3 9.9 72 1-76 422-507 (681)
369 KOG1205 Predicted dehydrogenas 86.3 16 0.00035 29.5 10.7 78 1-79 12-103 (282)
370 KOG1209 1-Acyl dihydroxyaceton 86.3 3.1 6.8E-05 32.3 6.2 73 1-80 7-94 (289)
371 PRK07530 3-hydroxybutyryl-CoA 86.2 12 0.00026 30.0 10.1 93 2-116 5-116 (292)
372 PRK10669 putative cation:proto 86.1 5.8 0.00013 35.1 8.8 61 3-73 419-487 (558)
373 COG1255 Uncharacterized protei 85.8 7.5 0.00016 27.0 7.2 88 2-121 15-104 (129)
374 PRK01747 mnmC bifunctional tRN 85.8 5.1 0.00011 36.3 8.5 103 3-118 60-205 (662)
375 cd08277 liver_alcohol_DH_like 85.8 2.9 6.4E-05 34.6 6.5 95 1-120 185-287 (365)
376 cd05278 FDH_like Formaldehyde 85.7 2.5 5.4E-05 34.4 6.0 94 1-119 168-267 (347)
377 PRK11154 fadJ multifunctional 85.5 9.9 0.00022 34.9 10.2 96 2-119 310-425 (708)
378 PRK08339 short chain dehydroge 85.4 6.3 0.00014 31.0 8.0 75 1-76 8-94 (263)
379 cd08255 2-desacetyl-2-hydroxye 85.4 6.7 0.00014 30.8 8.2 92 1-120 98-191 (277)
380 TIGR03201 dearomat_had 6-hydro 85.4 2.8 6E-05 34.5 6.2 40 1-41 167-208 (349)
381 cd08300 alcohol_DH_class_III c 85.2 2.4 5.3E-05 35.2 5.8 96 1-121 187-290 (368)
382 PRK06035 3-hydroxyacyl-CoA deh 85.2 8.6 0.00019 30.9 8.8 40 2-42 4-45 (291)
383 cd08233 butanediol_DH_like (2R 85.0 2.5 5.5E-05 34.6 5.7 95 1-120 173-273 (351)
384 TIGR00936 ahcY adenosylhomocys 84.8 5.7 0.00012 33.8 7.7 87 1-121 195-284 (406)
385 PRK06701 short chain dehydroge 84.7 16 0.00035 29.2 10.2 112 2-120 47-182 (290)
386 TIGR02441 fa_ox_alpha_mit fatt 84.6 6.7 0.00014 36.1 8.6 97 2-120 336-451 (737)
387 PRK07102 short chain dehydroge 84.3 6.3 0.00014 30.3 7.5 72 2-75 2-84 (243)
388 PRK15001 SAM-dependent 23S rib 84.3 18 0.00039 30.6 10.4 98 3-121 47-144 (378)
389 PF07279 DUF1442: Protein of u 84.3 14 0.0003 28.6 8.9 71 2-73 43-121 (218)
390 COG0569 TrkA K+ transport syst 84.2 4.5 9.7E-05 31.4 6.5 66 2-73 1-72 (225)
391 cd08242 MDR_like Medium chain 84.0 11 0.00023 30.4 8.9 87 1-118 156-244 (319)
392 cd08293 PTGR2 Prostaglandin re 83.8 11 0.00023 30.7 9.0 93 2-119 156-254 (345)
393 COG1179 Dinucleotide-utilizing 83.6 13 0.00027 29.5 8.5 71 2-73 31-127 (263)
394 cd08261 Zn_ADH7 Alcohol dehydr 83.6 3.4 7.4E-05 33.6 5.9 94 1-120 160-259 (337)
395 COG0287 TyrA Prephenate dehydr 83.5 7.5 0.00016 31.3 7.6 88 2-116 4-95 (279)
396 PF05050 Methyltransf_21: Meth 83.5 2.8 6.1E-05 30.1 4.9 37 6-42 1-42 (167)
397 PLN02178 cinnamyl-alcohol dehy 83.4 5.1 0.00011 33.6 6.9 92 1-120 179-274 (375)
398 PF02558 ApbA: Ketopantoate re 83.3 8.7 0.00019 27.3 7.4 97 4-120 1-102 (151)
399 PRK05854 short chain dehydroge 83.1 10 0.00022 30.8 8.4 75 1-77 14-103 (313)
400 PRK07417 arogenate dehydrogena 83.0 9.5 0.00021 30.5 8.1 84 3-115 2-87 (279)
401 PRK06522 2-dehydropantoate 2-r 82.8 14 0.00031 29.5 9.2 95 2-120 1-101 (304)
402 PRK05867 short chain dehydroge 82.6 8.4 0.00018 29.9 7.6 75 1-77 9-96 (253)
403 KOG3924 Putative protein methy 82.5 3.1 6.7E-05 35.0 5.1 101 2-118 194-307 (419)
404 TIGR00518 alaDH alanine dehydr 82.3 2.5 5.4E-05 35.5 4.6 40 2-42 168-209 (370)
405 PRK07904 short chain dehydroge 82.3 7.3 0.00016 30.5 7.1 74 1-75 8-95 (253)
406 PRK08594 enoyl-(acyl carrier p 82.2 22 0.00048 27.8 10.5 72 1-76 7-96 (257)
407 PRK07677 short chain dehydroge 82.0 10 0.00023 29.3 7.9 73 1-75 1-86 (252)
408 PRK06079 enoyl-(acyl carrier p 81.9 22 0.00048 27.6 10.3 72 1-77 7-93 (252)
409 PF01488 Shikimate_DH: Shikima 81.8 2.9 6.2E-05 29.6 4.2 71 1-76 12-84 (135)
410 cd08231 MDR_TM0436_like Hypoth 81.8 18 0.00038 29.8 9.5 95 1-120 178-281 (361)
411 TIGR02356 adenyl_thiF thiazole 81.8 5.6 0.00012 30.3 6.1 31 2-32 22-54 (202)
412 TIGR02825 B4_12hDH leukotriene 81.7 5.7 0.00012 32.2 6.5 92 1-119 139-237 (325)
413 cd08245 CAD Cinnamyl alcohol d 81.7 19 0.00041 29.0 9.6 91 1-119 163-256 (330)
414 PLN02494 adenosylhomocysteinas 81.7 7.6 0.00017 33.7 7.3 88 1-121 254-343 (477)
415 PRK05808 3-hydroxybutyryl-CoA 81.5 4.8 0.0001 32.2 5.9 92 3-116 5-115 (282)
416 PRK08415 enoyl-(acyl carrier p 81.3 25 0.00055 27.9 11.3 74 1-77 5-93 (274)
417 PF02153 PDH: Prephenate dehyd 81.2 7.7 0.00017 30.7 6.9 77 15-119 2-79 (258)
418 PRK06172 short chain dehydroge 81.1 12 0.00025 29.0 7.9 73 1-76 7-93 (253)
419 cd08240 6_hydroxyhexanoate_dh_ 80.9 5.3 0.00012 32.7 6.1 92 1-119 176-274 (350)
420 PRK05396 tdh L-threonine 3-deh 80.8 6.7 0.00014 32.0 6.7 96 1-121 164-265 (341)
421 PF00106 adh_short: short chai 80.8 9.5 0.00021 27.3 6.8 72 3-76 2-89 (167)
422 cd08278 benzyl_alcohol_DH Benz 80.7 15 0.00033 30.4 8.8 93 1-120 187-286 (365)
423 cd08298 CAD2 Cinnamyl alcohol 80.7 22 0.00049 28.6 9.7 87 2-119 169-256 (329)
424 COG0604 Qor NADPH:quinone redu 80.6 6.5 0.00014 32.4 6.4 95 1-122 143-244 (326)
425 PRK07890 short chain dehydroge 80.6 13 0.00028 28.7 8.0 73 1-76 5-91 (258)
426 PRK06124 gluconate 5-dehydroge 80.5 13 0.00027 28.9 7.9 73 1-76 11-97 (256)
427 PRK06125 short chain dehydroge 80.5 13 0.00028 28.9 8.0 74 1-76 7-90 (259)
428 COG1250 FadB 3-hydroxyacyl-CoA 80.5 14 0.00031 30.2 8.2 102 2-120 4-119 (307)
429 PRK07806 short chain dehydroge 80.4 24 0.00052 27.1 11.8 114 1-120 6-135 (248)
430 KOG2360 Proliferation-associat 79.9 2.9 6.4E-05 35.1 4.1 61 1-61 214-276 (413)
431 cd08295 double_bond_reductase_ 79.5 11 0.00025 30.6 7.6 93 1-119 152-251 (338)
432 cd05285 sorbitol_DH Sorbitol d 79.5 7.7 0.00017 31.7 6.6 95 1-120 163-266 (343)
433 PRK09291 short chain dehydroge 79.2 15 0.00032 28.4 7.9 73 1-76 2-82 (257)
434 cd08296 CAD_like Cinnamyl alco 79.0 6.9 0.00015 31.8 6.2 95 1-121 164-261 (333)
435 PRK10083 putative oxidoreducta 78.8 11 0.00024 30.6 7.3 96 1-121 161-261 (339)
436 PRK07063 short chain dehydroge 78.7 15 0.00033 28.5 7.8 74 1-76 7-95 (260)
437 PRK05876 short chain dehydroge 78.7 14 0.00031 29.2 7.8 74 1-77 6-93 (275)
438 TIGR02440 FadJ fatty oxidation 78.5 23 0.0005 32.5 9.8 96 2-119 305-420 (699)
439 PRK07984 enoyl-(acyl carrier p 78.5 31 0.00066 27.2 10.7 74 1-77 6-94 (262)
440 PRK07035 short chain dehydroge 78.4 15 0.00033 28.3 7.8 73 2-76 9-94 (252)
441 PRK07985 oxidoreductase; Provi 78.4 33 0.00071 27.5 10.4 74 1-76 49-137 (294)
442 PRK06484 short chain dehydroge 78.3 31 0.00067 30.0 10.3 70 1-76 269-352 (520)
443 PRK08159 enoyl-(acyl carrier p 78.3 32 0.00068 27.2 11.0 74 1-77 10-98 (272)
444 COG0300 DltE Short-chain dehyd 78.2 27 0.00059 27.9 9.0 78 2-80 7-97 (265)
445 PRK06194 hypothetical protein; 78.2 14 0.00031 29.1 7.7 73 2-77 7-93 (287)
446 PRK12921 2-dehydropantoate 2-r 78.2 21 0.00045 28.6 8.7 93 2-119 1-102 (305)
447 PRK05866 short chain dehydroge 77.9 16 0.00034 29.3 7.9 72 2-76 41-126 (293)
448 cd01842 SGNH_hydrolase_like_5 77.9 6 0.00013 29.6 4.9 56 63-121 46-101 (183)
449 PRK08703 short chain dehydroge 77.9 15 0.00033 28.1 7.5 57 1-59 6-66 (239)
450 PRK09496 trkA potassium transp 77.6 37 0.00081 28.9 10.5 63 2-73 1-71 (453)
451 PF11899 DUF3419: Protein of u 77.5 7.4 0.00016 32.8 5.9 42 1-43 36-77 (380)
452 KOG0023 Alcohol dehydrogenase, 77.3 22 0.00047 29.4 8.2 95 2-122 183-282 (360)
453 cd08265 Zn_ADH3 Alcohol dehydr 77.3 4.4 9.6E-05 33.8 4.6 95 1-120 204-308 (384)
454 PRK05786 fabG 3-ketoacyl-(acyl 77.3 17 0.00038 27.6 7.7 56 1-60 5-64 (238)
455 COG1893 ApbA Ketopantoate redu 77.2 15 0.00033 30.0 7.5 97 2-125 1-107 (307)
456 PLN02545 3-hydroxybutyryl-CoA 77.2 16 0.00036 29.3 7.8 93 2-116 5-116 (295)
457 cd05213 NAD_bind_Glutamyl_tRNA 77.1 14 0.0003 30.2 7.3 41 1-41 178-220 (311)
458 PF04072 LCM: Leucine carboxyl 77.0 18 0.00039 26.9 7.4 89 3-105 81-182 (183)
459 PRK07097 gluconate 5-dehydroge 76.8 18 0.00038 28.3 7.8 75 1-77 10-97 (265)
460 COG3315 O-Methyltransferase in 76.7 32 0.0007 28.0 9.3 103 2-119 94-209 (297)
461 COG1086 Predicted nucleoside-d 76.7 12 0.00027 33.2 7.1 79 1-80 250-338 (588)
462 cd08236 sugar_DH NAD(P)-depend 76.7 8.6 0.00019 31.3 6.1 92 1-119 160-258 (343)
463 PRK07024 short chain dehydroge 76.5 13 0.00029 28.9 6.9 71 2-76 3-87 (257)
464 cd08284 FDH_like_2 Glutathione 76.3 35 0.00075 27.7 9.6 95 1-120 168-267 (344)
465 PRK07523 gluconate 5-dehydroge 76.0 19 0.00042 27.8 7.7 73 1-76 10-96 (255)
466 PRK08862 short chain dehydroge 75.7 18 0.00039 27.8 7.4 73 1-75 5-91 (227)
467 PRK07502 cyclohexadienyl dehyd 75.5 22 0.00049 28.7 8.2 89 2-117 7-98 (307)
468 PRK07814 short chain dehydroge 75.4 22 0.00048 27.7 8.0 72 1-75 10-95 (263)
469 PRK08643 acetoin reductase; Va 75.4 22 0.00047 27.5 7.9 73 1-76 2-88 (256)
470 PRK07478 short chain dehydroge 75.3 23 0.00049 27.4 7.9 72 2-76 7-92 (254)
471 PRK08340 glucose-1-dehydrogena 75.2 17 0.00037 28.3 7.3 71 2-76 1-85 (259)
472 PRK06249 2-dehydropantoate 2-r 75.1 13 0.00029 30.2 6.8 94 2-120 6-107 (313)
473 TIGR00006 S-adenosyl-methyltra 75.1 4.1 8.8E-05 33.3 3.6 27 96-122 217-243 (305)
474 PRK09072 short chain dehydroge 74.9 21 0.00044 27.8 7.7 71 2-76 6-89 (263)
475 PRK07062 short chain dehydroge 74.8 22 0.00047 27.7 7.8 75 1-77 8-97 (265)
476 cd05279 Zn_ADH1 Liver alcohol 74.7 12 0.00026 31.0 6.5 95 1-120 184-286 (365)
477 cd08294 leukotriene_B4_DH_like 74.6 32 0.00069 27.6 8.9 92 1-119 144-241 (329)
478 PRK06113 7-alpha-hydroxysteroi 74.6 23 0.00049 27.5 7.8 73 1-76 11-97 (255)
479 PF02719 Polysacc_synt_2: Poly 74.6 6.3 0.00014 32.0 4.6 73 8-80 4-90 (293)
480 PRK08217 fabG 3-ketoacyl-(acyl 74.5 23 0.0005 27.1 7.8 73 1-76 5-91 (253)
481 cd08286 FDH_like_ADH2 formalde 74.4 11 0.00024 30.7 6.2 93 2-119 168-266 (345)
482 KOG0022 Alcohol dehydrogenase, 74.2 7 0.00015 32.2 4.7 42 1-42 193-236 (375)
483 COG0677 WecC UDP-N-acetyl-D-ma 74.2 15 0.00034 31.1 6.8 32 96-127 105-136 (436)
484 PRK08306 dipicolinate synthase 74.1 17 0.00037 29.5 7.1 90 1-121 152-243 (296)
485 PRK08268 3-hydroxy-acyl-CoA de 73.9 22 0.00047 31.3 8.1 94 2-117 8-120 (507)
486 PRK07326 short chain dehydroge 73.9 24 0.00053 26.8 7.7 70 2-75 7-90 (237)
487 PRK12826 3-ketoacyl-(acyl-carr 73.8 24 0.00053 26.9 7.8 72 1-75 6-91 (251)
488 PRK08945 putative oxoacyl-(acy 73.7 21 0.00046 27.4 7.4 74 1-76 12-101 (247)
489 PRK07454 short chain dehydroge 73.5 27 0.00058 26.7 7.9 72 2-76 7-92 (241)
490 PRK06128 oxidoreductase; Provi 73.5 45 0.00098 26.7 10.8 110 1-119 55-191 (300)
491 PRK06181 short chain dehydroge 73.5 24 0.00053 27.3 7.8 73 1-76 1-87 (263)
492 COG0275 Predicted S-adenosylme 73.4 4.9 0.00011 32.7 3.6 27 96-122 221-247 (314)
493 PRK06139 short chain dehydroge 73.2 22 0.00048 29.2 7.7 73 2-77 8-94 (330)
494 PRK06196 oxidoreductase; Provi 73.2 24 0.00052 28.5 7.9 70 1-77 26-109 (315)
495 cd05284 arabinose_DH_like D-ar 72.9 13 0.00028 30.1 6.3 94 1-120 168-267 (340)
496 PLN02702 L-idonate 5-dehydroge 72.9 44 0.00096 27.5 9.5 95 1-120 182-286 (364)
497 cd05281 TDH Threonine dehydrog 72.6 50 0.0011 26.8 9.8 94 1-120 164-263 (341)
498 PF02086 MethyltransfD12: D12 72.6 6 0.00013 30.9 4.1 41 2-43 22-62 (260)
499 TIGR03206 benzo_BadH 2-hydroxy 72.6 27 0.00058 26.7 7.8 72 1-75 3-88 (250)
500 PRK06130 3-hydroxybutyryl-CoA 72.5 40 0.00087 27.2 9.0 40 2-42 5-46 (311)
No 1
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.93 E-value=1.7e-26 Score=179.92 Aligned_cols=166 Identities=25% Similarity=0.433 Sum_probs=88.4
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|.+|||+|||||.++..+++. ++. +|+++|+|++|++.++++....+..+++++++|+.++++++++||+|++.+.++
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence 568999999999999999876 443 999999999999999999988776799999999999999999999999999887
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEe-
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRK- 157 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (201)
.+ .+..+++++++|+|||||++++.+++.|... ++.. .+. .|+..++|.
T Consensus 128 n~---------------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~--~~~~-~~~------------~y~~~ilP~~ 177 (233)
T PF01209_consen 128 NF---------------PDRERALREMYRVLKPGGRLVILEFSKPRNP--LLRA-LYK------------FYFKYILPLI 177 (233)
T ss_dssp G----------------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSH--HHHH-HHH------------H---------
T ss_pred hh---------------CCHHHHHHHHHHHcCCCeEEEEeeccCCCCc--hhhc-eee------------eeeccccccc
Confidence 65 5678999999999999999999998876532 1111 111 355667777
Q ss_pred CCCCchhhhhhccCCCCCCCCccccccccccccceeccccCCC
Q 028957 158 GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM 200 (201)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 200 (201)
|+.+..+. ..|+| |.++|++|++.-+..+.+.+.||+..
T Consensus 178 g~l~~~~~-~~Y~y---L~~Si~~f~~~~~~~~~l~~~Gf~~v 216 (233)
T PF01209_consen 178 GRLLSGDR-EAYRY---LPESIRRFPSPEELKELLEEAGFKNV 216 (233)
T ss_dssp -------------------------------------------
T ss_pred cccccccc-ccccc---cccccccccccccccccccccccccc
Confidence 77777665 68999 99999999999999999999999854
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.93 E-value=8.9e-27 Score=180.18 Aligned_cols=166 Identities=26% Similarity=0.428 Sum_probs=138.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
|.+|||+|||||.++..+++.... +|+++|+|+.|++.++++....+..+++++++|+..+|+++++||+|.++..++.
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrn 131 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRN 131 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhc
Confidence 579999999999999999988434 9999999999999999999887765699999999999999999999999999876
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEE-EEEe-
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFY-ILRK- 157 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 157 (201)
+ .++.++|++++|+|||||++++.+++.|... .+.. .+. .|++. ++|.
T Consensus 132 v---------------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~--~~~~-~~~------------~~~~~~v~P~~ 181 (238)
T COG2226 132 V---------------TDIDKALKEMYRVLKPGGRLLVLEFSKPDNP--VLRK-AYI------------LYYFKYVLPLI 181 (238)
T ss_pred C---------------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCch--hhHH-HHH------------HHHHHhHhhhh
Confidence 5 7889999999999999999999999876432 1110 011 12233 7777
Q ss_pred CCCCchhhhhhccCCCCCCCCccccccccccccceeccccCCC
Q 028957 158 GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM 200 (201)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 200 (201)
|....++. .+|+| ++++++.|++.-+....+...||+++
T Consensus 182 g~~~~~~~-~~y~y---L~eSi~~~p~~~~l~~~~~~~gf~~i 220 (238)
T COG2226 182 GKLVAKDA-EAYEY---LAESIRRFPDQEELKQMIEKAGFEEV 220 (238)
T ss_pred ceeeecCh-HHHHH---HHHHHHhCCCHHHHHHHHHhcCceEE
Confidence 77777666 69999 99999999999988888888888764
No 3
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.87 E-value=1.8e-22 Score=154.42 Aligned_cols=164 Identities=24% Similarity=0.326 Sum_probs=134.8
Q ss_pred CCcEEEecCCCChhhHHHHhcC-------CCeEEEEECCHHHHHHHHHHHhhcC---CCceEEEEcccCCCCCCCCceeE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-------ITAITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLPFSNDCFDV 70 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-------~~~v~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~D~ 70 (201)
++++||++||||.++.-+.+.. ..+|+.+|++++|+..++++....+ .+++.++++|++++|+++++||.
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~ 180 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDA 180 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCccee
Confidence 4789999999999999888762 1389999999999999999985544 23489999999999999999999
Q ss_pred EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccc-ccccccCCCCceEEEEEEeCCeee
Q 028957 71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF-RRPFFNAPQFTWSVEWITFGDGFH 149 (201)
Q Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 149 (201)
.++.+.+-. ..++.+.+++.+|+|||||++.+.+++.-.. .-..++. .
T Consensus 181 yTiafGIRN---------------~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~----------------~ 229 (296)
T KOG1540|consen 181 YTIAFGIRN---------------VTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD----------------Q 229 (296)
T ss_pred EEEecceec---------------CCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH----------------h
Confidence 998877744 4788999999999999999999999875431 1111111 3
Q ss_pred EEEEEEEe-CCCCchhhhhhccCCCCCCCCccccccccccccceeccccCC
Q 028957 150 YFFYILRK-GKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDE 199 (201)
Q Consensus 150 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 199 (201)
|++.+++. |..+.... .+|+| ++++|++|+.+-+++..+...||..
T Consensus 230 ysf~VlpvlG~~iagd~-~sYqY---LveSI~rfp~qe~f~~miedaGF~~ 276 (296)
T KOG1540|consen 230 YSFDVLPVLGEIIAGDR-KSYQY---LVESIRRFPPQEEFASMIEDAGFSS 276 (296)
T ss_pred hhhhhhchhhHhhhhhH-hhhhh---HHhhhhcCCCHHHHHHHHHHcCCcc
Confidence 56667787 88888888 89999 9999999999999988888888753
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.82 E-value=5.2e-21 Score=151.89 Aligned_cols=166 Identities=20% Similarity=0.304 Sum_probs=122.3
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhh---cCCCceEEEEcccCCCCCCCCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLL---KGYKEVKVLEADMLDLPFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~---~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 75 (201)
+.+|||+|||+|.++..+++. ++. +|+|+|+|++|++.++++... ...++++++++|+.++++++++||+|+++.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 468999999999999988876 443 899999999999999877531 224579999999999999889999999998
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEE
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYIL 155 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (201)
++|++ .+..++++++.++|||||++++.++..+... +.. ....|.... ...
T Consensus 154 ~l~~~---------------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~--~~~-~~~~~~~~~-----------~~~ 204 (261)
T PLN02233 154 GLRNV---------------VDRLKAMQEMYRVLKPGSRVSILDFNKSTQP--FTT-SMQEWMIDN-----------VVV 204 (261)
T ss_pred ccccC---------------CCHHHHHHHHHHHcCcCcEEEEEECCCCCcH--HHH-HHHHHHHhh-----------hhh
Confidence 88766 4678899999999999999999988765421 100 000110000 011
Q ss_pred EeCCCCchhhhhhccCCCCCCCCccccccccccccceeccccCCC
Q 028957 156 RKGKRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNIDEM 200 (201)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 200 (201)
+.+... ... ..|.| +..++.+|.+..+-.+.+.+.||+.+
T Consensus 205 ~~~~~~-~~~-~~y~~---l~~s~~~f~s~~el~~ll~~aGF~~~ 244 (261)
T PLN02233 205 PVATGY-GLA-KEYEY---LKSSINEYLTGEELEKLALEAGFSSA 244 (261)
T ss_pred HHHHHh-CCh-HHHHH---HHHHHHhcCCHHHHHHHHHHCCCCEE
Confidence 112211 122 36777 88889999999999999998888753
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.80 E-value=7.3e-19 Score=117.91 Aligned_cols=95 Identities=35% Similarity=0.598 Sum_probs=82.0
Q ss_pred EEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceeeecC
Q 028957 5 LELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNS 84 (201)
Q Consensus 5 LDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~ 84 (201)
||+|||+|..+..+++.+..+|+++|+++++++.++++.... ++.+..+|+.++++++++||+|++..++|++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGS----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeec----
Confidence 899999999999999994449999999999999999987653 5569999999999999999999999999876
Q ss_pred CCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957 85 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117 (201)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 117 (201)
++..++++++.|+|||||++++
T Consensus 74 -----------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -----------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -----------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----------cCHHHHHHHHHHHcCcCeEEeC
Confidence 6889999999999999999875
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.79 E-value=3.3e-18 Score=118.66 Aligned_cols=105 Identities=31% Similarity=0.510 Sum_probs=86.7
Q ss_pred CCcEEEecCCCChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEccc-CCCCCCCCceeEEEecc-
Q 028957 1 MTSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADM-LDLPFSNDCFDVVIEKA- 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~-~~~~~~~~~~D~v~~~~- 75 (201)
+.+|||+|||+|.++..+++. +. +|+++|+++++++.++++....+ .++++++++|+ ..... ...||+|++.+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 579999999999999999993 44 99999999999999999984443 47899999999 33332 35699999988
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.+++++ +.++..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~------------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLL------------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCC------------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccc------------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 555442 33678899999999999999999865
No 7
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.78 E-value=3e-18 Score=125.45 Aligned_cols=105 Identities=27% Similarity=0.484 Sum_probs=91.4
Q ss_pred CCcEEEecCCCChhhHHHHh-cCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYN-DGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~-~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~ 76 (201)
+.+|||+|||+|.++..+++ .++. +++|+|+++++++.++++++..+.++++++++|+.+++ ++ ++||+|++..+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 46899999999999999994 4433 99999999999999999998888889999999999966 44 78999999988
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
++++ .+...+++++.+.|+++|.+++..+.
T Consensus 83 l~~~---------------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHF---------------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGGT---------------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhc---------------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 8655 56789999999999999999987765
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.77 E-value=8.9e-19 Score=133.94 Aligned_cols=105 Identities=28% Similarity=0.408 Sum_probs=92.4
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
|.+|||+|||.|.++..+|+.|. .|+|+|+++.+++.|+.+....++ ++.+.+..++++....++||+|+|..+++|+
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 57999999999999999999997 999999999999999998887765 4678888777766555899999998888766
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
++...+++.+.+++||||.+++.+.+.
T Consensus 138 ---------------~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 138 ---------------PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ---------------CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 777889999999999999999988764
No 9
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.77 E-value=1e-17 Score=127.77 Aligned_cols=104 Identities=21% Similarity=0.416 Sum_probs=90.2
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+.+|||+|||+|..+..+++.+. +|+++|+|+.+++.++++....+..++.+.+.|+...+++ ++||+|+++.++|++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL 108 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhC
Confidence 46899999999999999999877 9999999999999999988877776789999998876664 679999999988765
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+.++...+++++.++|+|||.+++..
T Consensus 109 -------------~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 109 -------------EAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred -------------CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 34578899999999999999966543
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.74 E-value=1.1e-17 Score=135.77 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=91.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..+++.+. +|+|+|+++++++.++++....+ ..++.++++|+.++++..++||+|++..++++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 35899999999999999988776 89999999999999998765443 24789999999888777789999999999987
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
+ .+...+++++.++|||||.+++.+.+.
T Consensus 211 v---------------~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 211 V---------------ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred c---------------CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 7 566899999999999999999887654
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.74 E-value=2.6e-17 Score=135.30 Aligned_cols=107 Identities=24% Similarity=0.358 Sum_probs=92.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+++|||+|||+|.++..+++....+|+++|+++.+++.++++....+. +++.++++|+..+++++++||+|++..++++
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h 198 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEH 198 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhc
Confidence 468999999999999999886433999999999999999998876664 4799999999998888899999999888876
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
+ .+..++++++.++|||||++++.++..
T Consensus 199 ~---------------~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 199 M---------------PDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred c---------------CCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 6 456789999999999999999887653
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.74 E-value=3.9e-17 Score=127.43 Aligned_cols=109 Identities=25% Similarity=0.439 Sum_probs=93.4
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+++|||+|||+|.++..+++. ++. +|+++|+++.+++.++++....+.+++.++++|+...+++.++||+|++..+++
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccc
Confidence 468999999999999999876 343 999999999999999999877767789999999988877778999999987776
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
++ ++..++++++.++|+|||.+++.+...+.
T Consensus 126 ~~---------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 126 NV---------------PDYMQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred cC---------------CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 54 45678999999999999999988765543
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.73 E-value=6.9e-17 Score=123.02 Aligned_cols=104 Identities=16% Similarity=0.284 Sum_probs=86.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+.+|||+|||+|..+..+++.+. +|+++|+++.+++.++++....++ ++.+...|+...+++ ++||+|+++.++|++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALN-EDYDFIFSTVVFMFL 107 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhcccc-CCCCEEEEecccccC
Confidence 46899999999999999999877 999999999999999988876665 377788887655543 579999999888876
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+.++...+++++.++|+|||++++...
T Consensus 108 -------------~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 108 -------------QAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred -------------CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 345778999999999999999666543
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.72 E-value=3.8e-17 Score=129.46 Aligned_cols=106 Identities=20% Similarity=0.313 Sum_probs=91.1
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC-CCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP-FSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~ 78 (201)
+.+|||+|||+|.++..+++.+. +|+++|+++++++.++++....+. +++.++++|+.++. ...++||+|++..+++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~ 123 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLE 123 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHH
Confidence 36899999999999999999876 999999999999999999887663 57899999998753 4567899999999988
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
++ .+..++++++.++|||||.+++..++.
T Consensus 124 ~~---------------~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 124 WV---------------ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred hh---------------CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 76 455789999999999999998776553
No 15
>PRK05785 hypothetical protein; Provisional
Probab=99.71 E-value=1.7e-18 Score=134.74 Aligned_cols=150 Identities=14% Similarity=0.166 Sum_probs=110.0
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+.+|||+|||+|.++..+++....+|+|+|+|++|++.++++ ..++++|+.++++++++||+|++..++|++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 468999999999999999887423999999999999998763 135789999999999999999999988765
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEe-CC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRK-GK 159 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 159 (201)
.+..++++++.++|||. +.+++++.|... +.. .... .|+.++++. +.
T Consensus 124 ---------------~d~~~~l~e~~RvLkp~--~~ile~~~p~~~--~~~-~~~~------------~y~~~~~P~~~~ 171 (226)
T PRK05785 124 ---------------DNIEKVIAEFTRVSRKQ--VGFIAMGKPDNV--IKR-KYLS------------FYLRYIMPYIAC 171 (226)
T ss_pred ---------------CCHHHHHHHHHHHhcCc--eEEEEeCCCCcH--HHH-HHHH------------HHHHHHHHHHHH
Confidence 56789999999999993 333444444311 100 0001 133345555 55
Q ss_pred CCchhhhhhccCCCCCCCCccccccccccccceec
Q 028957 160 RSSADEELSQSHDKPLVPTISMFHEELEGEDYIFR 194 (201)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 194 (201)
....+. ..|+| +.++|+.|++.-+..+.+.+
T Consensus 172 ~~~~~~-~~Y~y---l~~si~~f~~~~~~~~~~~~ 202 (226)
T PRK05785 172 LAGAKC-RDYKY---IYYIYERLPTNSFHREIFEK 202 (226)
T ss_pred HhcCCh-HHHHH---HHHHHHHCCCHHHHHHHHHH
Confidence 555555 68999 99999999997776666554
No 16
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.71 E-value=3.5e-17 Score=111.72 Aligned_cols=96 Identities=31% Similarity=0.577 Sum_probs=80.7
Q ss_pred EEEecCCCChhhHHHHhcC---C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc-cc
Q 028957 4 VLELGCGNSRLSEGLYNDG---I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT-ME 78 (201)
Q Consensus 4 vLDlG~G~G~~~~~l~~~~---~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~-l~ 78 (201)
|||+|||+|..+..++... + .+++++|+++++++.++++....+. +++++++|+.+++...++||+|++.+. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999998773 3 3999999999999999999877654 889999999988777789999999544 88
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCc
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 113 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG 113 (201)
++ ..+...++++++.++|+|||
T Consensus 80 ~~-------------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL-------------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS-------------SHHHHHHHHHHHHHTEEEEE
T ss_pred CC-------------CHHHHHHHHHHHHHHhCCCC
Confidence 76 55789999999999999998
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.70 E-value=5.4e-16 Score=117.00 Aligned_cols=101 Identities=23% Similarity=0.271 Sum_probs=86.4
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|..+..++...+. +|+++|.++.+++.++++.+..+.++++++++|+.+++. .++||+|+++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~--- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV--- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc---
Confidence 478999999999999998875433 999999999999999999988887779999999988765 678999998531
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
..+..+++.+.+.|+|||.+++....
T Consensus 122 ----------------~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 122 ----------------ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred ----------------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 34578999999999999999987644
No 18
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.70 E-value=3.7e-17 Score=126.06 Aligned_cols=103 Identities=26% Similarity=0.390 Sum_probs=86.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-C-C----ceEEEEcccCCCCCCCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-Y-K----EVKVLEADMLDLPFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~-~----~i~~~~~d~~~~~~~~~~~D~v~~~ 74 (201)
|++|||+|||+|.++..|++.|. .|+|+|+++++++.|++...... . . ++++.+.|++.. .++||+|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 57899999999999999999997 99999999999999999854433 1 1 356677777664 3569999999
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
.+++|+ .++..++..+.+.|||+|.+++.+.++
T Consensus 166 evleHV---------------~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHV---------------KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHH---------------hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 998665 888999999999999999999987654
No 19
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.70 E-value=2.9e-16 Score=124.85 Aligned_cols=107 Identities=17% Similarity=0.284 Sum_probs=89.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+.+|||+|||+|..+..++.....+|+++|+++.+++.++++... .+++.+.++|+...++++++||+|++..+++++
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHHhC
Confidence 468999999999999888765323999999999999999988654 247899999998888888899999997776554
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
...+..++++++.++|||||.+++.++..
T Consensus 131 -------------~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 131 -------------SYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred -------------CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 23477899999999999999999887643
No 20
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.69 E-value=2.7e-16 Score=123.95 Aligned_cols=105 Identities=22% Similarity=0.313 Sum_probs=88.1
Q ss_pred CCcEEEecCCCChhhHHHHhc--CCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND--GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~--~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 76 (201)
+.+|||+|||+|..+..+++. .+. +++++|+|+.|++.+++++...+. .+++++++|+..++++ .+|+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 468999999999999888763 233 999999999999999999876653 3789999999877653 5899999999
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+|++ +..+...++++++++|+|||.+++.+.
T Consensus 135 l~~l-------------~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFL-------------EPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhC-------------CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9887 335578999999999999999998764
No 21
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.69 E-value=3.8e-16 Score=125.75 Aligned_cols=103 Identities=20% Similarity=0.354 Sum_probs=89.1
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+.+|||+|||+|..+..+++.+. +|+++|+|+.+++.++++....+. ++++...|+....+ .++||+|++..++|++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 35899999999999999999887 999999999999999999887776 78888888876555 5789999999998876
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+.++...+++++.++|+|||+++++.
T Consensus 198 -------------~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 -------------NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred -------------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34678899999999999999976653
No 22
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.69 E-value=1.8e-16 Score=125.21 Aligned_cols=102 Identities=24% Similarity=0.400 Sum_probs=87.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+.+|||+|||+|.++..++..+. +|+++|+++.+++.++++.. ...++++|+..+++++++||+|+++.+++++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhhc
Confidence 36899999999999999888765 99999999999999987642 3467899999888888899999999888755
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
.+...++.++.++|+|||.+++.++...
T Consensus 117 ---------------~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 117 ---------------GNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred ---------------CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 4668999999999999999999876653
No 23
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=1.2e-16 Score=126.04 Aligned_cols=110 Identities=21% Similarity=0.313 Sum_probs=97.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
|++|||+|||.|.+++.+++....+|+|+++|+++.+.+++++...++. ++++...|..++. +.||-|++...+++
T Consensus 73 G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEh 149 (283)
T COG2230 73 GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEH 149 (283)
T ss_pred CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHH
Confidence 7899999999999999999984339999999999999999999988866 7999999998874 44999999999998
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccc
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFR 126 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 126 (201)
+ ..+....+++.+.+.|+|||.+++.+...+...
T Consensus 150 v-------------g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~ 183 (283)
T COG2230 150 V-------------GKENYDDFFKKVYALLKPGGRMLLHSITGPDQE 183 (283)
T ss_pred h-------------CcccHHHHHHHHHhhcCCCceEEEEEecCCCcc
Confidence 8 557789999999999999999999888776644
No 24
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=2e-16 Score=125.30 Aligned_cols=97 Identities=24% Similarity=0.272 Sum_probs=82.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..+++..+. +|+++|+++.+++.++++ ++.++++|+.++. +.++||+|+++.++|+
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 101 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK-PKPDTDVVVSNAALQW 101 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC-CCCCceEEEEehhhhh
Confidence 468999999999999999887543 899999999999998753 5788999988764 4578999999999987
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+ .+..+++++++++|+|||.+++...
T Consensus 102 ~---------------~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 102 V---------------PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred C---------------CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 6 4567899999999999999987643
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.69 E-value=4.3e-16 Score=124.51 Aligned_cols=106 Identities=23% Similarity=0.339 Sum_probs=90.9
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|.+|||+|||+|..+..++.. +.. +|+++|+++.+++.++++....+.+++.++.+|+..+++++++||+|+++.++|
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 579999999999988777665 443 799999999999999999887777789999999998888778999999988876
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+. .+..++++++.++|+|||++++.+..
T Consensus 158 ~~---------------~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 158 LS---------------PDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CC---------------CCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 54 45578999999999999999987653
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.68 E-value=4.5e-16 Score=126.95 Aligned_cols=104 Identities=21% Similarity=0.310 Sum_probs=85.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
|++|||+|||+|.++..++..++..|+|+|+++.++..++......+ ..++.++.+|+.+++. .++||+|+|..++++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 57899999999999999999887689999999998876543322211 2478999999998887 688999999988876
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
. .+...+++++++.|+|||.+++.+.
T Consensus 202 ~---------------~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 202 R---------------RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred c---------------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 5 4567899999999999999987653
No 27
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.67 E-value=4.8e-16 Score=118.33 Aligned_cols=112 Identities=22% Similarity=0.324 Sum_probs=90.0
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEecccc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKATM 77 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~~l 77 (201)
.+|||+|||+|.++..++...+. .++++|+++.+++.++++....+++++.++++|+..+. ++.+++|.|++
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~---- 93 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL---- 93 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE----
Confidence 57999999999999999988655 99999999999999999988877779999999997643 34456777764
Q ss_pred ceeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEecCC
Q 028957 78 EVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
++++||.+..++... ...+++++.++|+|||.+++.+...
T Consensus 94 -----~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 94 -----NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred -----ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 346889765433222 2679999999999999999876544
No 28
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.67 E-value=5.1e-16 Score=118.86 Aligned_cols=114 Identities=19% Similarity=0.241 Sum_probs=90.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEccc-CCCC--CCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM-LDLP--FSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D~v~~~~~ 76 (201)
+.+|||+|||+|..+..++...+. +|+++|+++++++.++++....+.+++.++++|+ ..++ ++.++||+|+++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~- 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF- 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC-
Confidence 368999999999999999887544 8999999999999999998877777899999998 6554 5677899998642
Q ss_pred cceeeecCCCCCCCCCccHH--HHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 77 MEVLFVNSGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
++||...+.+.. ....+++++.++|+|||.+++.+....
T Consensus 120 --------~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~ 160 (202)
T PRK00121 120 --------PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG 160 (202)
T ss_pred --------CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 346654332222 257899999999999999998765443
No 29
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.67 E-value=1.1e-15 Score=115.02 Aligned_cols=104 Identities=28% Similarity=0.486 Sum_probs=86.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+.++||+|||.|..+..+++.|. .|+++|.|+..++.+++.....++ .++..+.|+.+..++ +.||+|++..+++++
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFP-EEYDFIVSTVVFMFL 107 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS
T ss_pred CCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhcccc-CCcCEEEEEEEeccC
Confidence 46899999999999999999999 899999999999999888777766 499999999887765 689999998888877
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+.+...++++++...++|||++++.++
T Consensus 108 -------------~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 108 -------------QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp --------------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -------------CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 456788999999999999999887554
No 30
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.67 E-value=9.1e-16 Score=115.41 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=82.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..++...+. +|+++|.++.+++.++++.+..+.++++++++|+.++. ..++||+|++.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-- 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h--
Confidence 578999999999999998876544 89999999999999999888777778999999998764 357899999864 3
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.....+++.+.++|+|||.+++..
T Consensus 119 ----------------~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 ----------------ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----------------hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 234567888899999999988764
No 31
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.66 E-value=2.2e-15 Score=118.27 Aligned_cols=106 Identities=21% Similarity=0.252 Sum_probs=88.4
Q ss_pred CCcEEEecCCCChhhHHHHhcC--CC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG--IT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~--~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 76 (201)
+.+|||+|||+|.++..+++.. +. +++++|+++.+++.+++++...+ ..+++++++|+..++++ .+|+|+++.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 3689999999999999998752 23 89999999999999999887654 24689999999887654 5899999998
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+|++ +.++...++++++++|+|||.+++.+..
T Consensus 132 l~~~-------------~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 132 LQFL-------------PPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhhC-------------CHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 8876 3456789999999999999999987643
No 32
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.65 E-value=1.1e-15 Score=119.26 Aligned_cols=103 Identities=27% Similarity=0.512 Sum_probs=89.3
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
.+|||+|||+|.++..+++.++. +++++|+++.+++.++++.. +++.++.+|+...++++++||+|+++.++|+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhhhc
Confidence 58999999999999999988765 79999999999999987754 36889999999888778899999999988765
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
.+..++++++.++|+|||.+++.++...
T Consensus 112 ---------------~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 112 ---------------DDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred ---------------cCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 4567899999999999999998876543
No 33
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.65 E-value=6.7e-17 Score=109.80 Aligned_cols=96 Identities=32% Similarity=0.552 Sum_probs=64.4
Q ss_pred EEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccccceee
Q 028957 5 LELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 5 LDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~ 81 (201)
||+|||+|.++..+++..+. +++++|+|+.+++.+++++......+......+..+.. ...++||+|++..++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999988544 99999999999988888887765444444444444322 122599999999999887
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEE
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 115 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l 115 (201)
++...+++++.++|+|||.+
T Consensus 80 --------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------------S-HHHHHHHHTTT-TSS-EE
T ss_pred --------------hhHHHHHHHHHHHcCCCCCC
Confidence 67789999999999999985
No 34
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.64 E-value=1.9e-15 Score=122.37 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=83.4
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-CCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
|++|||+|||+|.++..++..++..|+|+|+++.++..++..-... ...++.+...++.+++.. .+||+|++.+++++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhc
Confidence 5789999999999999998888768999999999987654322111 124678888888877653 58999999999877
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+ .+...++++++++|+|||.+++.+.
T Consensus 201 ~---------------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 201 R---------------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred c---------------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 6 5667899999999999999998754
No 35
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.64 E-value=2.6e-15 Score=128.76 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=89.3
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+.+|||+|||+|..+..++.....+|+|+|+|+.+++.++++..... .++.+.++|+...++++++||+|++..+++++
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~ 345 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFDVIYSRDTILHI 345 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEEEEEECCccccc
Confidence 46899999999999998887633389999999999999988765433 47899999998887777899999998888766
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
.+..+++++++++|+|||.+++.++.
T Consensus 346 ---------------~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 346 ---------------QDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred ---------------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 46679999999999999999988764
No 36
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=2.6e-15 Score=119.08 Aligned_cols=98 Identities=23% Similarity=0.400 Sum_probs=83.0
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..+++..+ .+|+++|+++.+++.++++. +++.++.+|+.... +.++||+|+++.++|+
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ-PPQALDLIFANASLQW 105 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC-CCCCccEEEEccChhh
Confidence 46899999999999999988743 39999999999999998764 46789999987654 3468999999999886
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+ .+..++++++.++|+|||.+++..
T Consensus 106 ~---------------~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 106 L---------------PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred C---------------CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 6 456789999999999999988764
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.63 E-value=2.1e-15 Score=120.13 Aligned_cols=106 Identities=28% Similarity=0.397 Sum_probs=84.9
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|.+|||+|||.|.++..+++. |. +|+++.+|++..+.+++++...++ +++.+...|..+++ .+||.|++..++.
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~E 138 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFE 138 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGG
T ss_pred CCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechh
Confidence 689999999999999999998 66 999999999999999999998885 46899999988764 3899999998887
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
++ ..+....+++++.++|+|||++++.....+
T Consensus 139 hv-------------g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 139 HV-------------GRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp GT-------------CGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred hc-------------ChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 76 446789999999999999999987665443
No 38
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.63 E-value=5.8e-15 Score=110.08 Aligned_cols=110 Identities=24% Similarity=0.434 Sum_probs=88.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..++..++. +|+++|+++.+++.+++++..++..+++++..|+.. ..+.++||+|+++-.++.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SBT
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchhc
Confidence 368999999999999999999886 899999999999999999999887669999999876 334689999999765542
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
- .........++++...+.|+|||.++++...
T Consensus 111 ~----------~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 111 G----------GDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp T----------SHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred c----------cccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 2 0113345789999999999999999776544
No 39
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.63 E-value=4.2e-15 Score=122.63 Aligned_cols=111 Identities=18% Similarity=0.286 Sum_probs=92.3
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEeccccc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKATME 78 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~ 78 (201)
..+||+|||+|.++..+|...+. .++|+|+++.++..+.++....+++++.++++|+..+ .++++++|.|++
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~l----- 198 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFV----- 198 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEE-----
Confidence 47999999999999999998665 9999999999999999999888888999999998754 366788888875
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
++++||.+.++..-....+++++.++|+|||.+.+.+-.
T Consensus 199 ----nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 199 ----HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred ----eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 357899765541112368999999999999999987644
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.63 E-value=1e-14 Score=102.53 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=82.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~~~l~ 78 (201)
+.+|||+|||+|.++..+++..+. +|+++|+++.+++.++++....+.+++.++..|+.. .+....+||+|++....
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~- 98 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG- 98 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc-
Confidence 368999999999999999987543 999999999999999999887776788999888764 22224689999975432
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
....++++.+.+.|+|||.+++..
T Consensus 99 -----------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 99 -----------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred -----------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 334689999999999999998754
No 41
>PRK06922 hypothetical protein; Provisional
Probab=99.63 E-value=5.5e-15 Score=127.98 Aligned_cols=117 Identities=18% Similarity=0.327 Sum_probs=92.2
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l 77 (201)
+.+|||+|||+|..+..++...+. +++|+|+++.|++.++++....+ .++.++++|+.+++ +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 478999999999999888876544 99999999999999998876544 36788999998876 677899999999999
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
|+++... |+.....+..+..+++++++++|||||.+++.+.
T Consensus 498 H~L~syI--p~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYI--EYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred Hhhhhhc--ccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8763110 1100111346789999999999999999998764
No 42
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.62 E-value=1.6e-15 Score=111.32 Aligned_cols=97 Identities=29% Similarity=0.520 Sum_probs=80.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+.+|||+|||+|.++..++..+. +++++|+++.+++. .++.....+......+.++||+|++..+++++
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 46899999999999999988888 99999999999888 13344444333444567899999999999887
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
++...+++++.++|||||++++.++...
T Consensus 92 ---------------~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 92 ---------------PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp ---------------SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ---------------ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 5789999999999999999999887653
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.62 E-value=4.3e-15 Score=115.36 Aligned_cols=104 Identities=22% Similarity=0.359 Sum_probs=88.0
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
++|||+|||+|..+..+++..+. +++++|+++++++.+++++...+. ++++++..|+...+.+ ++||+|++..++++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 57999999999999999887543 899999999999999999877653 4689999998765554 58999999888876
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+ .+...+++++.++|+|||.+++.++.
T Consensus 80 ~---------------~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 80 I---------------KDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred C---------------CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 6 45679999999999999999987753
No 44
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.62 E-value=2.8e-15 Score=104.66 Aligned_cols=113 Identities=25% Similarity=0.409 Sum_probs=87.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP--FSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l 77 (201)
|.+|||+|||+|.++..+++.+..+++++|+++..++.++.++...+. .+++++++|+.... ++.++||+|+++-.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 679999999999999999999834999999999999999999988764 57999999998754 677999999986444
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
... ........+....+++++.+.|+|||.++++.+
T Consensus 81 ~~~-------~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPR-------SGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSB-------TT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-------cccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 211 001111223567999999999999999988753
No 45
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.62 E-value=4.4e-15 Score=121.26 Aligned_cols=102 Identities=25% Similarity=0.335 Sum_probs=86.2
Q ss_pred CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..+++.. ..+|+++|+++++++.++++... .+++++.+|+.+++++.++||+|+++.++++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 3589999999999998887763 23899999999999999987542 4688999999988888889999999888876
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+ .+..++++++.++|+|||++++...
T Consensus 191 ~---------------~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 191 W---------------PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred C---------------CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 5 3456799999999999999887654
No 46
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.61 E-value=9.8e-15 Score=111.83 Aligned_cols=102 Identities=21% Similarity=0.378 Sum_probs=84.1
Q ss_pred CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|..+..++... ..+++|+|+|+++++.++++. +++.+.++|+.+ ++++++||+|+++.++++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCCCCEEEEEECChhhh
Confidence 4689999999999999998863 339999999999999998764 356788899887 777889999999999987
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
+ +.++..++++++.+++ ++.+++.++..+
T Consensus 118 l-------------~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 118 I-------------NPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred C-------------CHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 6 3367889999999997 467777766544
No 47
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.61 E-value=4.5e-15 Score=110.73 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=88.8
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceE-EEEcccCCCC-CCCCceeEEEecccccee
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADMLDLP-FSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~~D~v~~~~~l~~~ 80 (201)
.|||+|||||..-...-......|+++|+++.|-+.+.+.++.....++. ++.++.++++ ++++++|+|++..++-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC-- 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC-- 156 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe--
Confidence 47999999998765543232239999999999999999988877655666 8999999987 7899999999988773
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
+.++..+.|+++.++|+|||++++.++...
T Consensus 157 -------------Sve~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 157 -------------SVEDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred -------------ccCCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 447889999999999999999999987654
No 48
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.60 E-value=3.3e-14 Score=106.81 Aligned_cols=119 Identities=20% Similarity=0.278 Sum_probs=88.3
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+++|||+|||+|.++..++..+. +|+++|+++++++.+++++...+. ++.++.+|+.... .++||+|+++..++..
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 46899999999999999999887 999999999999999999887664 6888999987643 4589999998766533
Q ss_pred eecC-CCCCCC-----CCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 81 FVNS-GDPWNP-----QPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 81 ~~~~-~~~~~~-----~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
-... ..+|.+ ..........+++++.++|+|||++++......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 1000 001100 001122367899999999999999988765543
No 49
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.60 E-value=5e-16 Score=115.62 Aligned_cols=145 Identities=24% Similarity=0.319 Sum_probs=104.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-C-CCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L-PFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~v~~~~~l~ 78 (201)
|.+|||+|||.|.+...+.........|+|++++.+..+.++ .+.++++|+.. + .+++++||.|+++.++.
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 579999999999999988875333999999999988888764 67899999986 3 48899999999999997
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKG 158 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (201)
++ ....++|+++.|+ |...++..++-.+ |..++. .+-+|
T Consensus 87 ~~---------------~~P~~vL~EmlRV---gr~~IVsFPNFg~------------W~~R~~-----------l~~~G 125 (193)
T PF07021_consen 87 AV---------------RRPDEVLEEMLRV---GRRAIVSFPNFGH------------WRNRLQ-----------LLLRG 125 (193)
T ss_pred hH---------------hHHHHHHHHHHHh---cCeEEEEecChHH------------HHHHHH-----------HHhcC
Confidence 76 6678888888776 3444544332222 222221 34456
Q ss_pred CCCchhhhhhccCCCCCCCCccccccccccccceecccc
Q 028957 159 KRSSADEELSQSHDKPLVPTISMFHEELEGEDYIFRTNI 197 (201)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 197 (201)
+...++. .+|.| |..+.|+ +.+..++++.-...|+
T Consensus 126 rmPvt~~-lPy~W--YdTPNih-~~Ti~DFe~lc~~~~i 160 (193)
T PF07021_consen 126 RMPVTKA-LPYEW--YDTPNIH-LCTIKDFEDLCRELGI 160 (193)
T ss_pred CCCCCCC-CCCcc--cCCCCcc-cccHHHHHHHHHHCCC
Confidence 6676666 78888 7777776 6666666665544443
No 50
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.60 E-value=7.9e-15 Score=109.49 Aligned_cols=104 Identities=23% Similarity=0.374 Sum_probs=83.5
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 81 (201)
.++||+|||.|.++..++.+. ..++++|+++..++.+++++... ++|++.+.|+... .+.++||+|+++.+++++
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL- 119 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL--PHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL- 119 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT----SS-EEEEEEES-GGGS-
T ss_pred ceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCC-CCCCCeeEEEEehHhHcC-
Confidence 468999999999999999884 49999999999999999998764 6999999998764 457899999999999988
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
.+.+++..++.++...|+|||.+++..+.
T Consensus 120 -----------~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 120 -----------DDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp -----------SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred -----------CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 34578899999999999999999987653
No 51
>PRK08317 hypothetical protein; Provisional
Probab=99.60 E-value=1.7e-14 Score=112.55 Aligned_cols=104 Identities=25% Similarity=0.345 Sum_probs=88.1
Q ss_pred CCcEEEecCCCChhhHHHHhcC-CC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+.+|||+|||+|.++..++... +. +++++|+++.+++.++++... ..+++.+...|+...+++.++||+|++..+++
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 98 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQ 98 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCCCCceEEEEechhh
Confidence 4689999999999999998874 33 999999999999999887332 23578999999988777778999999998887
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
++ .+..++++++.++|+|||.+++.+.
T Consensus 99 ~~---------------~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 99 HL---------------EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cc---------------CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 66 4568899999999999999988764
No 52
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.60 E-value=1.6e-14 Score=111.28 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=85.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh------------cCCCceEEEEcccCCCCCC-CCc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL------------KGYKEVKVLEADMLDLPFS-NDC 67 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~------------~~~~~i~~~~~d~~~~~~~-~~~ 67 (201)
+.+|||+|||.|..+..++.+|. .|+|+|+|+.+++.+.+.... ....+++++++|+..++.. .+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 35899999999999999999998 899999999999976432110 0113688999999886532 357
Q ss_pred eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
||.|+...+++++ +.+.....++.+.++|+|||++++.++.
T Consensus 114 fD~i~D~~~~~~l-------------~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 114 VDAVYDRAALIAL-------------PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cCEEEechhhccC-------------CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 9999988888776 4567788999999999999997777664
No 53
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.58 E-value=2.5e-14 Score=111.76 Aligned_cols=108 Identities=27% Similarity=0.419 Sum_probs=90.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
+.+|||+|||+|.++..++..++ .+++++|+++.+++.+++++...+ ..++.++.+|+...+.+.++||+|+++.++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 36899999999999999988864 499999999999999999876543 246899999998877667889999998877
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
|+. .+...+++++.++|+|||.+++.+...+
T Consensus 132 ~~~---------------~~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 132 RNV---------------PDIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred ccC---------------CCHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 655 4567899999999999999998876544
No 54
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.58 E-value=3.1e-14 Score=110.06 Aligned_cols=106 Identities=26% Similarity=0.446 Sum_probs=89.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+.+|||+|||+|..+..+++..+. +++++|+++.+++.++++.. ...++.++.+|+.+.+++.++||+|+++..++
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 468999999999999999888663 89999999999999998875 22478999999988777677899999987776
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
+. .+...+++++.+.|+|||++++.+...+
T Consensus 118 ~~---------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 118 NV---------------TDIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred Cc---------------ccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 54 5678899999999999999998876543
No 55
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.57 E-value=8.1e-14 Score=114.29 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=91.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
|++|||+|||+|.++.+++..+. .++|+|+++.+++.++.++...+..++.+.++|+.+++.+.++||+|+++..+..-
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 46899999999999998887766 89999999999999999998888767889999999988777899999986443211
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccc
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 125 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 125 (201)
... ..........++++++.++|+|||++++...+....
T Consensus 262 ~~~------~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~ 300 (329)
T TIGR01177 262 TTA------AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDL 300 (329)
T ss_pred ccc------cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCH
Confidence 000 000011336899999999999999998877655433
No 56
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.57 E-value=1.6e-14 Score=105.83 Aligned_cols=112 Identities=29% Similarity=0.528 Sum_probs=95.6
Q ss_pred cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+|||+|||+|.+...+++.++. ..+|+|.++.+++.|+...+..+.++ |+|.+.|+.+..+..++||+|+-.+.++++
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 8999999999999999999877 69999999999999998888888766 999999999866777999999999999998
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
-..++.|- ..+..-+..+.++|+|||++++..++
T Consensus 150 sLs~d~~~-------~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 150 SLSPDGPV-------GRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred ecCCCCcc-------cceeeehhhHhhccCCCcEEEEEecC
Confidence 66655431 23355677888999999999987765
No 57
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.57 E-value=1.8e-14 Score=114.55 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=82.4
Q ss_pred CcEEEecCCCCh----hhHHHHhcCC-----C-eEEEEECCHHHHHHHHHHHhh----cC--------------------
Q 028957 2 TSVLELGCGNSR----LSEGLYNDGI-----T-AITCIDLSAVAVEKMQERLLL----KG-------------------- 47 (201)
Q Consensus 2 ~~vLDlG~G~G~----~~~~l~~~~~-----~-~v~~vD~~~~~~~~~~~~~~~----~~-------------------- 47 (201)
.+|||+|||+|. ++..+++.+. . +|+|+|+|+.+++.|++..-. .+
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~ 180 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVK 180 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEC
Confidence 489999999996 4444444321 2 899999999999999875310 00
Q ss_pred ---CCceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 48 ---YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 48 ---~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
..++.|.++|+.+.+.+.++||+|+|.++++++ ..+...++++++++.|+|||.+++..
T Consensus 181 ~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-------------~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 181 PELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-------------DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred hHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-------------CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 136899999999877667899999999999876 44677899999999999999999753
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.56 E-value=6e-14 Score=106.12 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=81.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..+++..+. +|+++|+++.+++.++++....+..+++++++|+.. .+ .++||+|++....+
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~D~v~~~~~~~- 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKADAIFIGGSGG- 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCCCEEEECCCcc-
Confidence 468999999999999999887654 999999999999999999887776678999988753 23 35799999864432
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
....+++.+.+.|+|||++++...
T Consensus 109 -----------------~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 109 -----------------NLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred -----------------CHHHHHHHHHHhcCCCeEEEEEEe
Confidence 235688999999999999987643
No 59
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=4.6e-14 Score=108.83 Aligned_cols=98 Identities=21% Similarity=0.191 Sum_probs=80.1
Q ss_pred CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+.+|||+|||+|..+..+++. +. .+|+++|+++++++.+++++...+..++.++++|+.....+.++||+|++....+
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGP 156 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCcc
Confidence 478999999999999988876 33 2999999999999999999988887789999999876555567899999865542
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
. +.+.+.+.|+|||++++..
T Consensus 157 ~---------------------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 157 D---------------------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred c---------------------chHHHHHhhCCCcEEEEEE
Confidence 2 2245677899999988753
No 60
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=1.3e-13 Score=105.76 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=78.7
Q ss_pred CCcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
+.+|||+|||+|..+..+++.. ..+|+++|+++++++.+++++...+.. +++++.+|+.......++||+|++...+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 4689999999999998888763 238999999999999999998877753 5899999987644345789999987665
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+++ .+++.+.|+|||++++..
T Consensus 153 ~~~---------------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 153 STI---------------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred chh---------------------hHHHHHhcCcCcEEEEEE
Confidence 332 246789999999988754
No 61
>PRK06202 hypothetical protein; Provisional
Probab=99.55 E-value=5.2e-14 Score=110.00 Aligned_cols=105 Identities=22% Similarity=0.275 Sum_probs=81.8
Q ss_pred CCcEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 75 (201)
+.+|||+|||+|.++..++.. ++. +++++|+++++++.++++.... ++.+...++..++.++++||+|+++.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEECC
Confidence 358999999999998888752 443 8999999999999998875432 46677777666665678999999999
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
++|++ ..++..++++++.++++ |.+++.+...+
T Consensus 138 ~lhh~-------------~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 138 FLHHL-------------DDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred eeecC-------------ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 99887 23456789999999997 56666666554
No 62
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.55 E-value=7.8e-14 Score=107.81 Aligned_cols=98 Identities=21% Similarity=0.150 Sum_probs=79.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-C-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+.+|||+|||+|.++..+++... . +|+++|+++++++.+++++...+.++++++++|+........+||+|++.....
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP 157 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc
Confidence 47899999999999999988743 2 699999999999999999998888889999999876543446899999754332
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.+.+.+.+.|+|||++++..
T Consensus 158 ---------------------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 158 ---------------------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred ---------------------cccHHHHHhcCcCcEEEEEE
Confidence 23345788999999988754
No 63
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.55 E-value=1e-13 Score=111.41 Aligned_cols=135 Identities=13% Similarity=0.225 Sum_probs=91.8
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
.+|||+|||+|.++..++...+. +|+++|+++.+++.++++....+. .++.++++|+.. .++.++||+|+++-....
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVD 201 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCC
Confidence 57999999999999999987544 999999999999999999988775 469999999865 234568999998632210
Q ss_pred ------e----eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCce
Q 028957 80 ------L----FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTW 137 (201)
Q Consensus 80 ------~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~ 137 (201)
+ ..+....+.-...+......+++.+.+.|+|||++++............+....+.|
T Consensus 202 ~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 202 AEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDVPFTW 269 (284)
T ss_pred ccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCCce
Confidence 0 000000000011223446788999999999999998765433322223344444555
No 64
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.55 E-value=6.9e-14 Score=113.60 Aligned_cols=105 Identities=13% Similarity=0.205 Sum_probs=88.1
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+.+|||+|||+|.++..+++..+. +++++|. +.+++.++++....+. ++++++.+|+.+.+++ .+|+|+++.++|
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~lh 226 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRILY 226 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhhhh
Confidence 368999999999999999998765 8999997 7899999998887764 4799999999865554 369999888887
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
.+ +.+...++++++++.|+|||++++.++.
T Consensus 227 ~~-------------~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 227 SA-------------NEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred cC-------------ChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 64 3456689999999999999999998763
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.55 E-value=9e-14 Score=115.08 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=86.3
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC---CceEEEEcccCCCCCCCCceeEEEecccc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
.+|||+|||+|.++..+++..+. +|+++|.|+.+++.+++++..++. .+++++..|+... .+..+||+|+|+-.+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPf 308 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPPF 308 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcCc
Confidence 48999999999999999988765 999999999999999999876652 3678888887652 334689999998887
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
|.... -......++++.+.+.|+|||.++++.
T Consensus 309 h~~~~----------~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 309 HQQHA----------LTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCcc----------CCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 75410 022345789999999999999999885
No 66
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.55 E-value=5.3e-14 Score=120.77 Aligned_cols=104 Identities=25% Similarity=0.301 Sum_probs=86.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC--CCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~v~~~~~l~ 78 (201)
+.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++... ..+++.++++|+.. ++++.++||+|+++.+++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 36899999999999999998865 99999999999988765322 23578999999863 456778999999999998
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
++ ..++..++++++.++|+|||++++.+.
T Consensus 115 ~l-------------~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 115 YL-------------SDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred hC-------------CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 77 335578999999999999999988754
No 67
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.55 E-value=5.8e-14 Score=117.05 Aligned_cols=104 Identities=29% Similarity=0.373 Sum_probs=85.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
|.+|||+|||+|.++..+++....+|+++|+|+++++.++++... . .+++...|+..+ .++||.|++..+++++
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l-~v~~~~~D~~~l---~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--L-PVEIRLQDYRDL---NGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--C-eEEEEECchhhc---CCCCCEEEEeCchhhC
Confidence 468999999999999999876323999999999999999988743 2 478888887664 4689999998888766
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
+......+++++.++|||||.+++.++..+
T Consensus 242 -------------g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 242 -------------GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred -------------ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 335678899999999999999998776543
No 68
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.55 E-value=2.2e-14 Score=110.88 Aligned_cols=111 Identities=20% Similarity=0.357 Sum_probs=94.0
Q ss_pred cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEeccccc
Q 028957 3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKATME 78 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~~l~ 78 (201)
.+||||||.|.++..+|+..+. .++|+|+....+..+.+.+...+++|+.+++.|+..+- .++++. +
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl---------~ 121 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSL---------D 121 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCe---------e
Confidence 6899999999999999999887 99999999999999999999999889999999997642 233354 4
Q ss_pred eeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEecCC
Q 028957 79 VLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
.++.+|++||.++.+++.. ...+++.+.+.|+|||.+.+.+-..
T Consensus 122 ~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 122 KIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred EEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 4556689999998887766 4689999999999999999876543
No 69
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.55 E-value=3.6e-14 Score=107.84 Aligned_cols=110 Identities=26% Similarity=0.406 Sum_probs=84.8
Q ss_pred cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-C--CCCCceeEEEeccccc
Q 028957 3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P--FSNDCFDVVIEKATME 78 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~~D~v~~~~~l~ 78 (201)
.+||+|||.|.++..+|...+. .++|+|+....+..+.++....+++|+.++++|+..+ . ++++++|.|.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~------ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIY------ 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEE------
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEE------
Confidence 5899999999999999998776 9999999999999999999888899999999999872 2 4446655555
Q ss_pred eeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEecC
Q 028957 79 VLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
.++++||.+..++... ...+++.+.++|+|||.+.+.+-.
T Consensus 94 ---i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 94 ---INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ---EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred ---EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 4578999987766664 469999999999999999988754
No 70
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.53 E-value=1.7e-13 Score=112.50 Aligned_cols=107 Identities=24% Similarity=0.357 Sum_probs=87.4
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
.+|||+|||+|.++..+++..+. +|+++|+++.+++.+++++..+++ ...++..|+... ..++||+|+++..+|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD--IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc--cCCCccEEEECCCccCC
Confidence 47999999999999999988664 999999999999999999988765 456777787652 25789999999888753
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
.. .......++++++.+.|+|||.++++...
T Consensus 275 ~~----------~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 275 IQ----------TSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cc----------ccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 10 12356789999999999999999887654
No 71
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.53 E-value=2e-13 Score=109.95 Aligned_cols=101 Identities=21% Similarity=0.301 Sum_probs=80.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+++|||+|||+|.++..+++.+..+|+++|+++.+++.++++...++.. ++.+...+.. ....++||+|+++...
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILA-- 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCH--
Confidence 4789999999999999988887669999999999999999998877643 3555555532 2335689999986543
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
..+..++.++.++|+|||++++....
T Consensus 236 ----------------~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 ----------------EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ----------------HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 34568999999999999999987654
No 72
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.52 E-value=2.2e-13 Score=100.99 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=88.2
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
|.+++|+|||||..+.+++..++. +|+++|-++++++..++|....+.+|+.++.+++-..-....++|.|+..+.
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg--- 111 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG--- 111 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC---
Confidence 578999999999999999977776 9999999999999999999999999999999999764222237999997554
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
..+..+++.+...|+|||+++....+-
T Consensus 112 ----------------~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 112 ----------------GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred ----------------CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 456889999999999999999765543
No 73
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.52 E-value=1.8e-13 Score=105.83 Aligned_cols=106 Identities=21% Similarity=0.178 Sum_probs=84.1
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh------------cCCCceEEEEcccCCCCCC-CCc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL------------KGYKEVKVLEADMLDLPFS-NDC 67 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~------------~~~~~i~~~~~d~~~~~~~-~~~ 67 (201)
+.+|||+|||.|..+..++..|. +|+|+|+++.+++.+.+.... ....++++.++|+..++.. ...
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 35899999999999999999998 899999999999976432110 0124688999999887532 358
Q ss_pred eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
||.|+...+++++ +.+...+.++.+.++|+|||++++.++
T Consensus 117 fd~v~D~~~~~~l-------------~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 117 VDAVYDRAALIAL-------------PEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred eeEEEehHhHhhC-------------CHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 9999998888876 457788999999999999998665433
No 74
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.52 E-value=1.5e-13 Score=106.68 Aligned_cols=105 Identities=26% Similarity=0.340 Sum_probs=87.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC-CCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+..++.+...|+...+.. .++||+|++..++++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 46899999999999999988776 7999999999999999988766544688888888765433 378999999888876
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
. .+...+++++.++|+|||.+++....
T Consensus 125 ~---------------~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 125 V---------------PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred C---------------CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 5 45678999999999999998877654
No 75
>PLN03075 nicotianamine synthase; Provisional
Probab=99.52 E-value=1.7e-13 Score=109.46 Aligned_cols=105 Identities=19% Similarity=0.205 Sum_probs=83.4
Q ss_pred CCcEEEecCCCChhhHHHHh--cCCC-eEEEEECCHHHHHHHHHHHhh-cCC-CceEEEEcccCCCCCCCCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYN--DGIT-AITCIDLSAVAVEKMQERLLL-KGY-KEVKVLEADMLDLPFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~--~~~~-~v~~vD~~~~~~~~~~~~~~~-~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~ 75 (201)
+++|+|+|||.|.++..++. ..+. +++++|.++++++.|++.+.. .++ ++++|.++|+.+.....+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 57899999998866554433 3444 899999999999999999854 443 46999999998754335789999998
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+++.+ ..++..++++++.+.|+|||.+++..
T Consensus 203 ALi~~-------------dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGM-------------DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccccc-------------ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 66544 33677899999999999999999875
No 76
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1e-13 Score=110.44 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=80.4
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
|++|||+|||+|-+++.+++.|..+++|+|+++.+++.+++|...++++. ++....+.... ...++||+|++|=..
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-~~~~~~DvIVANILA-- 239 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-PENGPFDVIVANILA-- 239 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-cccCcccEEEehhhH--
Confidence 67999999999999999999999899999999999999999999887643 21222222111 223689999987532
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+-+.++...+.+.++|||++++...-
T Consensus 240 ----------------~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 240 ----------------EVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ----------------HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 34578999999999999999987643
No 77
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.52 E-value=2.4e-13 Score=107.45 Aligned_cols=96 Identities=24% Similarity=0.379 Sum_probs=75.3
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+++|||+|||+|.++..+++.+..+|+++|+++.+++.++++...++. .++.+..+ +.+||+|+++...
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------~~~fD~Vvani~~-- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------DLKADVIVANILA-- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------CCCcCEEEEcCcH--
Confidence 578999999999999988887776799999999999999999887664 22332222 1279999986432
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
.....+++++.++|+|||.+++.....
T Consensus 190 ----------------~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 190 ----------------NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred ----------------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 345688999999999999999876543
No 78
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.52 E-value=2.1e-13 Score=105.59 Aligned_cols=99 Identities=23% Similarity=0.322 Sum_probs=81.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..++..+. +++|+|++++++..+++++...+. .++.+.++|+...+ ++||+|++..++++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIH 131 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHh
Confidence 46899999999999999988765 999999999999999999876653 47899999987764 78999999877765
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
+ ..++..++++++.+++++++.+.
T Consensus 132 ~-------------~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 132 Y-------------PASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred C-------------CHHHHHHHHHHHHHHhCCCEEEE
Confidence 4 23567889999999988765544
No 79
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.51 E-value=4e-14 Score=106.47 Aligned_cols=99 Identities=25% Similarity=0.322 Sum_probs=86.1
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
.+|.|+|||+|..+..++++.+. .++|+|.|++|++.|.+++ ++++|..+|+.+.. +....|+++++.+||++
T Consensus 32 ~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~-p~~~~dllfaNAvlqWl 105 (257)
T COG4106 32 RRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWK-PEQPTDLLFANAVLQWL 105 (257)
T ss_pred ceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcC-CCCccchhhhhhhhhhc
Confidence 57999999999999999999776 9999999999999998774 58899999998754 35678999999999988
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
++-..++.++...|.|||.+-+..+.
T Consensus 106 ---------------pdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 106 ---------------PDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred ---------------cccHHHHHHHHHhhCCCceEEEECCC
Confidence 45567899999999999999886543
No 80
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.51 E-value=9.8e-14 Score=105.96 Aligned_cols=135 Identities=18% Similarity=0.283 Sum_probs=101.3
Q ss_pred cEEEecCCCChhhHHHHhcCCC---eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC----CCCCCCceeEEEecc
Q 028957 3 SVLELGCGNSRLSEGLYNDGIT---AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD----LPFSNDCFDVVIEKA 75 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~---~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~D~v~~~~ 75 (201)
+|||+|||.|.....+++..+. .++++|.++.+++..+++..... .++...+.|+.. .+...+++|++++.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEE
Confidence 6899999999999999887443 89999999999999998755443 355555566553 235678999999999
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEE
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYF 151 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (201)
++.++ +.+...++++++.++|||||.+++.++.........+.....--.+.|..-.+...||
T Consensus 153 vLSAi-------------~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~Yf 215 (264)
T KOG2361|consen 153 VLSAI-------------HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYF 215 (264)
T ss_pred EEecc-------------ChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeee
Confidence 99888 5678899999999999999999999998877665555543332233444333333344
No 81
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.51 E-value=1.4e-13 Score=112.23 Aligned_cols=114 Identities=25% Similarity=0.328 Sum_probs=86.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC----------CCceEEEEcccCCCC----CCC-
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG----------YKEVKVLEADMLDLP----FSN- 65 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~----------~~~i~~~~~d~~~~~----~~~- 65 (201)
+.+|||||||.|+.+.-+...+...++|+|++...++.|+++..... .-...++.+|..... +..
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~ 142 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPR 142 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSST
T ss_pred CCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcccc
Confidence 46899999999999988888888899999999999999999982210 013567888877531 333
Q ss_pred -CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccc
Q 028957 66 -DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 125 (201)
Q Consensus 66 -~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 125 (201)
.+||+|-|.+++|+.| ++.+..+.+++++...|+|||+++.+++.....
T Consensus 143 ~~~FDvVScQFalHY~F-----------ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 143 SRKFDVVSCQFALHYAF-----------ESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TS-EEEEEEES-GGGGG-----------SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred CCCcceeehHHHHHHhc-----------CCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 5999999999999997 566788899999999999999999888765443
No 82
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.51 E-value=9.9e-14 Score=110.90 Aligned_cols=96 Identities=29% Similarity=0.497 Sum_probs=78.2
Q ss_pred CcEEEecCCCChhhHHHHhcCC----CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGI----TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~----~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
.+|||+|||+|.++..++.... ..++|+|+|+.+++.+.++. +++.+.++|+.++++++++||+|++...
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~~- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIYA- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEecC-
Confidence 5799999999999999876532 27999999999999997653 4788999999998988899999997422
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
...++++.++|+|||++++..+...+
T Consensus 161 ---------------------~~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 161 ---------------------PCKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred ---------------------CCCHHHHHhhccCCCEEEEEeCCCcc
Confidence 12357889999999999988766543
No 83
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.51 E-value=3e-15 Score=110.54 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=103.1
Q ss_pred EEEECCHHHHHHHHHHHhhcC---CCceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHH
Q 028957 27 TCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLE 103 (201)
Q Consensus 27 ~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (201)
+|+|+|++|++.|+++..... .++++++++|+.++++++++||+|++..++|++ .+..++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---------------~d~~~~l~ 65 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---------------VDRLRAMK 65 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---------------CCHHHHHH
Confidence 489999999999987764321 347999999999999988999999999888766 56789999
Q ss_pred HHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeCCCCchhhhhhccCCCCCCCCccccc
Q 028957 104 GVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKRSSADEELSQSHDKPLVPTISMFH 183 (201)
Q Consensus 104 ~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 183 (201)
+++++|||||.+++.++..+.... ......|.... ...+-+. ..... ..|+| +..+|..|+
T Consensus 66 ei~rvLkpGG~l~i~d~~~~~~~~---~~~~~~~~~~~-----------~~~~~~~-~~~~~-~~y~y---l~~si~~f~ 126 (160)
T PLN02232 66 EMYRVLKPGSRVSILDFNKSNQSV---TTFMQGWMIDN-----------VVVPVAT-VYDLA-KEYEY---LKYSINGYL 126 (160)
T ss_pred HHHHHcCcCeEEEEEECCCCChHH---HHHHHHHHccc-----------hHhhhhH-HhCCh-HHHHh---HHHHHHHCc
Confidence 999999999999999887654211 10011111000 1111122 22333 47888 999999999
Q ss_pred cccccccceeccccCCC
Q 028957 184 EELEGEDYIFRTNIDEM 200 (201)
Q Consensus 184 ~~~~~~~~~~~~~~~~~ 200 (201)
+.-+..+.|.+.||.++
T Consensus 127 ~~~el~~ll~~aGF~~~ 143 (160)
T PLN02232 127 TGEELETLALEAGFSSA 143 (160)
T ss_pred CHHHHHHHHHHcCCCcc
Confidence 99999999999999865
No 84
>PRK14967 putative methyltransferase; Provisional
Probab=99.50 E-value=3.4e-13 Score=104.80 Aligned_cols=119 Identities=23% Similarity=0.325 Sum_probs=86.0
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+.+|||+|||+|.++..++..+..+++++|+++.+++.++++....+. ++.++.+|+... ++.++||+|+++..+...
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA-VEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh-ccCCCeeEEEECCCCCCC
Confidence 368999999999999999887655999999999999999999877664 578888888653 446789999986443211
Q ss_pred eec------CCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 81 FVN------SGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 81 ~~~------~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
... ...+|............+++++.++|+|||++++....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 000 00012111222334678899999999999999876443
No 85
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.50 E-value=2.2e-13 Score=108.07 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=81.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
|++|||||||+|+++..++..|++.|+|+|.+....-..+-.-.-.+. ..+..+..-+.+++. .+.||+|+|.+++.|
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH 194 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence 689999999999999999999998999999988766553322111221 123344445666666 688999999998876
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
. .+....|.+++..|++||.+++.+...
T Consensus 195 r---------------r~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 195 R---------------RSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred c---------------CCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 5 677889999999999999999877643
No 86
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.50 E-value=1.3e-13 Score=109.19 Aligned_cols=113 Identities=26% Similarity=0.342 Sum_probs=92.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-C-----CceEEEEcccCCC------CCCCCce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-Y-----KEVKVLEADMLDL------PFSNDCF 68 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~-----~~i~~~~~d~~~~------~~~~~~~ 68 (201)
++.+++||||.|+.++-+-.++...++|+|+....++.|+++..... . -.+.++++|.+.. ++++.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 35689999999999999988888899999999999999999876443 1 1367899997642 3445569
Q ss_pred eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
|+|-|.+++|..| +..+..+-++.++.+.|+|||.++-..+....
T Consensus 198 DivScQF~~HYaF-----------etee~ar~~l~Nva~~LkpGG~FIgTiPdsd~ 242 (389)
T KOG1975|consen 198 DIVSCQFAFHYAF-----------ETEESARIALRNVAKCLKPGGVFIGTIPDSDV 242 (389)
T ss_pred ceeeeeeeEeeee-----------ccHHHHHHHHHHHHhhcCCCcEEEEecCcHHH
Confidence 9999999999886 56678899999999999999999977665443
No 87
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=4.5e-13 Score=108.64 Aligned_cols=119 Identities=15% Similarity=0.219 Sum_probs=86.0
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
.+|||+|||+|.++..++...+. +|+++|+++.+++.++++....+. .++.++++|+.+ .++.++||+|+++-.+..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 57999999999999999887554 999999999999999999987775 469999999865 233468999998632210
Q ss_pred ------e----eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 ------L----FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ------~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+ ...+...+.-...+......+++++.+.|+|||.+++....
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 0 00000001111123345678999999999999999875443
No 88
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.49 E-value=1.2e-13 Score=106.15 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=77.9
Q ss_pred CCcEEEecCCCChhhHHHHhcC-C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDV 70 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~ 70 (201)
+.+|||+|||+|.++..+++.. . ..|+++|+++ + ...+++.++++|+.+.+ +..++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 4689999999999999998874 3 2899999987 1 12357899999998743 55678999
Q ss_pred EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
|+++.+.+.. +.|..+.+........+++++.++|+|||.+++..+....
T Consensus 121 V~S~~~~~~~----g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 121 VMSDMAPNMS----GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred EecCCCCccC----CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 9987655432 1211111111112367899999999999999987776544
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.49 E-value=2.5e-13 Score=108.97 Aligned_cols=101 Identities=23% Similarity=0.387 Sum_probs=78.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
|++|||+|||||-+++..++.|..+|+++|+++.+++.+++|...+++.. ++..... ......+||+|++|-..
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~--~~~~~~~~dlvvANI~~--- 235 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLS--EDLVEGKFDLVVANILA--- 235 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCT--SCTCCS-EEEEEEES-H---
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEe--cccccccCCEEEECCCH---
Confidence 57999999999999999999998899999999999999999999988644 3322221 22334899999987543
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
.-+..++..+.+.|+|||.+++.....
T Consensus 236 ---------------~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 236 ---------------DVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp ---------------HHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred ---------------HHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 445788899999999999999876543
No 90
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.48 E-value=1.1e-12 Score=101.21 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=79.2
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+.+|||+|||+|..+..++.... +++++|.++++++.+++++...+..++.++.+|+.......++||+|++...++
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~-- 155 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP-- 155 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch--
Confidence 46899999999999988877754 899999999999999999988887789999999865323347899999865432
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.+.+.+.+.|+|||.+++...
T Consensus 156 -------------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 156 -------------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -------------------hhhHHHHHhcCCCcEEEEEEc
Confidence 223567889999999887654
No 91
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.48 E-value=5.2e-13 Score=101.93 Aligned_cols=101 Identities=14% Similarity=0.251 Sum_probs=81.2
Q ss_pred CCcEEEecCCCChhhHHHHhc-CC-CeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCC-CCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GI-TAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDL-PFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~-~~~~~~~D~v~~~~~ 76 (201)
+.+|||+|||+|.++..++.. +. .+|+++|+++.+++.++++....+ ..++.++.+|+.+. +...+.||.|++...
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~ 120 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG 120 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC
Confidence 468999999999999998775 33 389999999999999999988877 46789999998753 222367999997432
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
. .....+++.+.++|+|||++++..
T Consensus 121 ~------------------~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 121 S------------------EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred c------------------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 1 345789999999999999998644
No 92
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.48 E-value=5e-13 Score=101.83 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=79.4
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~~~l~ 78 (201)
+.+|||+|||+|.++..++...+ .+|+++|+++++++.+++++...+..+++++.+|+.. ++.....+|.++...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~--- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG--- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC---
Confidence 46899999999999999986643 3999999999999999999988777789999999864 221112346554311
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
......+++++.+.|+|||++++.....
T Consensus 118 ----------------~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 118 ----------------GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred ----------------CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 1235789999999999999999887653
No 93
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.4e-12 Score=103.12 Aligned_cols=119 Identities=23% Similarity=0.429 Sum_probs=90.5
Q ss_pred cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957 3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 81 (201)
+|||+|||+|.++..++...+. +|+++|+|+.+++.|++|...+++.++.+++.|++. +.. ++||+|++|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsN------- 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSN------- 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccC-CceeEEEeC-------
Confidence 5999999999999999999876 999999999999999999999887667777778765 232 489999986
Q ss_pred ecCCCCCCCCC---------------------ccHHHHHHHHHHHhhcccCCcEEEEEec-CCcccccccccCCC
Q 028957 82 VNSGDPWNPQP---------------------ETVTKVMAMLEGVHRVLKPDGLFISVSF-GQPHFRRPFFNAPQ 134 (201)
Q Consensus 82 ~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~L~~gG~l~~~~~-~~~~~~~~~~~~~~ 134 (201)
+||++.. .+.+...+++.++.+.|+|||.+++..- +.......++....
T Consensus 184 ----PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~ 254 (280)
T COG2890 184 ----PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTG 254 (280)
T ss_pred ----CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcC
Confidence 4455432 2334578899999999999999887644 33332334444444
No 94
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.47 E-value=5.8e-13 Score=104.04 Aligned_cols=104 Identities=25% Similarity=0.374 Sum_probs=85.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+. .+.+...|+...+ ...++||+|++..++++
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 46899999999999999988766 899999999999999988766554 5778888877653 33578999999877765
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
. .+...+++.+.+.|+|||.+++..+.
T Consensus 127 ~---------------~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 127 V---------------PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred c---------------CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 5 45578999999999999999887654
No 95
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.47 E-value=4.4e-13 Score=104.22 Aligned_cols=119 Identities=21% Similarity=0.298 Sum_probs=87.1
Q ss_pred CcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP--FSNDCFDVVIEKATM 77 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l 77 (201)
.+|||+|||+|.++..++++.. .+++++|+++++.+.|++++..++ ..++++++.|+.... ....+||+|+||-.+
T Consensus 46 ~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPy 125 (248)
T COG4123 46 GRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPY 125 (248)
T ss_pred CeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCC
Confidence 6899999999999999999844 499999999999999999998876 467999999998753 344579999997544
Q ss_pred ceeeec-CCCCCCCCCccHH--HHHHHHHHHhhcccCCcEEEEEec
Q 028957 78 EVLFVN-SGDPWNPQPETVT--KVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 78 ~~~~~~-~~~~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
...-.. ..+|.-...++.. ..+.+++...++||+||++.++-.
T Consensus 126 f~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 126 FKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 322000 0000000000000 167889999999999999987753
No 96
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.46 E-value=1.1e-12 Score=103.30 Aligned_cols=117 Identities=20% Similarity=0.322 Sum_probs=86.1
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
.+|||+|||+|.++..++...+. +++++|+++.+++.++++....+.+++.++++|+.+ .++.++||+|+++..+...
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 167 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPE 167 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCch
Confidence 48999999999999999987544 999999999999999999988777789999999876 3456789999986543211
Q ss_pred e--ecCC------CC---CCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 81 F--VNSG------DP---WNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 81 ~--~~~~------~~---~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
- .... .| +............+++++.++|+|||.+++..
T Consensus 168 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 168 ADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 0 0000 00 00001112334688999999999999988754
No 97
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2e-12 Score=102.65 Aligned_cols=108 Identities=25% Similarity=0.387 Sum_probs=87.3
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
.+|||+|||.|.++..+++..+. +++.+|.+..+++.+++++..++..+..+...|... +..+ +||+|+||-.||.-
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPfh~G 237 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPFHAG 237 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCccCC
Confidence 48999999999999999999776 999999999999999999998887666667777665 3333 99999999888853
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
- .-...-..+++....+.|++||.|.++...
T Consensus 238 ~----------~v~~~~~~~~i~~A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 238 K----------AVVHSLAQEIIAAAARHLKPGGELWIVANR 268 (300)
T ss_pred c----------chhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence 0 001112348999999999999999988763
No 98
>PRK14968 putative methyltransferase; Provisional
Probab=99.45 E-value=1.8e-12 Score=97.77 Aligned_cols=119 Identities=24% Similarity=0.347 Sum_probs=84.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc--eEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+++|||+|||+|.++..++..+. +++++|+++++++.+++++...+..+ +.++..|+.+ ++..++||+|+++..+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 46899999999999999998854 99999999999999999987766544 8888898766 33445899999865432
Q ss_pred eeeecCC-C-----CCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 79 VLFVNSG-D-----PWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 79 ~~~~~~~-~-----~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
..-.+.. . .+.-...+...+.++++++.++|+|||.+++...+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 1000000 0 00000012334678999999999999998876543
No 99
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.45 E-value=1.2e-12 Score=101.98 Aligned_cols=96 Identities=22% Similarity=0.244 Sum_probs=77.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..+++.+. .|+++|+++.+++.++++....+. .++.+..+|+. ...++||+|++..++++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchhhc
Confidence 35899999999999999998877 799999999999999998876654 47889988843 33578999999888866
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCc
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 113 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG 113 (201)
+ ..+....+++++.+.+++++
T Consensus 140 ~-------------~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 140 Y-------------PQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred C-------------CHHHHHHHHHHHHhhcCCeE
Confidence 4 23567788888888765443
No 100
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.45 E-value=2e-12 Score=103.98 Aligned_cols=119 Identities=14% Similarity=0.247 Sum_probs=86.4
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
.+|||+|||+|.++..++...+. +|+++|+++.+++.++++....+.. ++.++++|+.+ +++..+||+|+++-..-.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 58999999999999999987654 9999999999999999998877764 49999999876 334448999998632210
Q ss_pred e---------e-ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 L---------F-VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ~---------~-~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
. . ..+...+.....+...+.++++.+.+.|+|||.+++....
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 0 0 0000000111223446789999999999999998876543
No 101
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.45 E-value=2.5e-12 Score=86.42 Aligned_cols=102 Identities=32% Similarity=0.527 Sum_probs=82.5
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEeccccceee
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~l~~~~ 81 (201)
+|+|+|||+|..+..++.....+++++|+++..+..+++........+++++..|..+... ..+++|+|+++.+++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 5899999999999999884344999999999999988854444445678999999887543 45789999998777541
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
......+++.+.+.|+|+|.+++.
T Consensus 80 -------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 267789999999999999998865
No 102
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.1e-13 Score=100.26 Aligned_cols=98 Identities=22% Similarity=0.175 Sum_probs=83.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
|.+|||+|||+|+.+..+++... +|+.+|..++..+.|++++...++.|+.++++|...--.+..+||.|+.......+
T Consensus 73 g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~v 151 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEV 151 (209)
T ss_pred CCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCCC
Confidence 57999999999999999999866 99999999999999999999999989999999988744455899999987665433
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
-+.+.+.|++||++++-.-
T Consensus 152 ---------------------P~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 152 ---------------------PEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ---------------------CHHHHHhcccCCEEEEEEc
Confidence 2346788999999998654
No 103
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=1.6e-12 Score=110.66 Aligned_cols=121 Identities=20% Similarity=0.253 Sum_probs=89.4
Q ss_pred CCcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc--
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT-- 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~-- 76 (201)
|.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...++.++.++++|+.... +.++||+|++...
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCT 329 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCC
Confidence 4689999999999998887752 2389999999999999999999888778999999998754 4568999995311
Q ss_pred -cceeeecCCCCCCCCCccHH----HHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 77 -MEVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 77 -l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
...+.-+++.+|...++... ...+++.++.++|+|||++++.+++.
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 11111122233433222222 24578999999999999999988764
No 104
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.44 E-value=2.7e-12 Score=106.78 Aligned_cols=117 Identities=14% Similarity=0.186 Sum_probs=82.9
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEeccccce
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATMEV 79 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~l~~ 79 (201)
.+|||+|||+|.++..++...+. +++++|+|+.+++.++++....+. ++.++++|+.+... ..++||+|+++-....
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 57999999999999998876443 999999999999999999887764 79999999865432 2357999998643210
Q ss_pred ee----------ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 80 LF----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 80 ~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.- +++...+.....+.+..+++++.+.+.|+|||.+++..
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 00 00000011111233346788888899999999987643
No 105
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.42 E-value=2.2e-12 Score=104.50 Aligned_cols=106 Identities=24% Similarity=0.232 Sum_probs=78.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCC-CCCCCC----ceeEEE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLD-LPFSND----CFDVVI 72 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~-~~~~~~----~~D~v~ 72 (201)
+.+|||+|||+|..+..+++... .+|+++|+|++|++.+.+++.... .-++.++++|+.+ .+.... ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 36899999999999999988853 389999999999999998876532 1246778999876 333322 222333
Q ss_pred eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+...++.+ ..++..+++++++++|+|||.+++..
T Consensus 144 ~gs~~~~~-------------~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNF-------------TPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCC-------------CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 33445443 34678899999999999999988643
No 106
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=2.4e-12 Score=109.30 Aligned_cols=122 Identities=23% Similarity=0.303 Sum_probs=90.2
Q ss_pred CCcEEEecCCCChhhHHHHhcC-C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~ 74 (201)
|.+|||+|||+|..+..++... . .+|+++|+++.+++.+++++...++.++.++++|+...+ ...++||.|++.
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 5789999999999999998763 2 389999999999999999999988878999999998764 335689999963
Q ss_pred cc---cceeeecCCCCCCCCCccHH----HHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 75 AT---MEVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 75 ~~---l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
.. ...+..+.+..|...+.... ...++++++.++|||||++++.+++-
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 21 11121122233332221111 14688999999999999999877653
No 107
>PRK04266 fibrillarin; Provisional
Probab=99.42 E-value=3.9e-12 Score=98.83 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=74.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CCCCCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~v~~~~ 75 (201)
|.+|||+|||+|.++..+++... ..|+++|+++.|++.+.++.... +++.++.+|+... ++. .+||+|++..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 46899999999999999988742 38999999999999887765543 5789999998642 122 4588888421
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
.+|| ....+++++.++|||||.+++.
T Consensus 150 ---------~~p~--------~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 150 ---------AQPN--------QAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ---------CChh--------HHHHHHHHHHHhcCCCcEEEEE
Confidence 1222 2356789999999999999983
No 108
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.41 E-value=3e-12 Score=101.92 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=87.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc-
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM- 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l- 77 (201)
|.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...+..++.++..|+..++...+.||.|++....
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 46899999999999999887632 289999999999999999999888778999999987765444679999963221
Q ss_pred --ceeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 78 --EVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
..+-.+....|...++.. ....++++++.++|||||+++..+++.
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 111111111111111111 124569999999999999999887764
No 109
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.41 E-value=3.7e-12 Score=98.46 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=88.4
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHh------------hcCCCceEEEEcccCCCCCC---C
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLL------------LKGYKEVKVLEADMLDLPFS---N 65 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~------------~~~~~~i~~~~~d~~~~~~~---~ 65 (201)
+.+||+.|||.|..+..++..|. +|+|+|+|+..++.+.+... .....++++.++|+++++.. .
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 36999999999999999999999 89999999999998865311 01123789999999987532 3
Q ss_pred CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 66 DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 66 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+.||.|+-..+|+++ +.+...+..+.+.++|+|||.++++++.
T Consensus 123 ~~fD~VyDra~~~Al-------------pp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 123 PVFDIWYDRGAYIAL-------------PNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CCcCeeeeehhHhcC-------------CHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 689999998889887 4577889999999999999998887764
No 110
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.40 E-value=5.5e-12 Score=106.86 Aligned_cols=120 Identities=19% Similarity=0.327 Sum_probs=88.1
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l 77 (201)
|.+|||+|||+|..+..++..+. .+|+++|+++.+++.+++++...+. ++.++++|+...+ ++.++||.|++....
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 57899999999999999998764 3999999999999999999988776 4789999988653 335689999964321
Q ss_pred c---eeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 78 E---VLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 78 ~---~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
. .+..+.+..|...+... ....++++.+.++|+|||++++.+++
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1 11112222333222211 22468899999999999999988764
No 111
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.40 E-value=5.9e-12 Score=100.63 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=84.0
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..++...+. +++++|+++.+++.++++.......++.++.+|+... .+.++||+|+++..+..
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCcCC
Confidence 358999999999999999988644 9999999999999999998733345789999998652 33578999998643211
Q ss_pred ee-----------ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 80 LF-----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 80 ~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.- ..+...+...........++++++.++|+|||.+++..
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 00 00000000011233456889999999999999988754
No 112
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.40 E-value=3.1e-12 Score=106.98 Aligned_cols=111 Identities=15% Similarity=0.246 Sum_probs=85.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCCCC--C--CCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLP--F--SNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~--~--~~~~~D~v~~~ 74 (201)
|++|||+|||+|.++..++..+..+|+++|+++.+++.+++++..++++ +++++++|+.+.. + ..++||+|+++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 5789999999999998877666569999999999999999999988863 7899999997641 1 24589999973
Q ss_pred cccceeeecCCCCCCCCCc-----cHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 75 ATMEVLFVNSGDPWNPQPE-----TVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
+|...... .......++....++|+|||.++..+++.
T Consensus 301 -----------PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 301 -----------PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred -----------CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 34332211 11235566777889999999999877654
No 113
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.40 E-value=4.2e-12 Score=103.10 Aligned_cols=98 Identities=21% Similarity=0.233 Sum_probs=75.0
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-----CCceEEEEcccCCCCCCCCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-----YKEVKVLEADMLDLPFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 75 (201)
+.+|||+|||+|.++..+++.+. +|+++|+++.|++.++++..... ..++.+...|+..+ .++||+|+|..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~ 220 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD 220 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence 35899999999999999999876 89999999999999999876541 23578888887654 47899999988
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
+++++ ..+....+++.+.+. .++|.++
T Consensus 221 vL~H~-------------p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHY-------------PQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEec-------------CHHHHHHHHHHHHhh-cCCEEEE
Confidence 87665 223455677777754 4555533
No 114
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.40 E-value=1e-12 Score=100.73 Aligned_cols=99 Identities=22% Similarity=0.236 Sum_probs=77.5
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|++|||+|||+|+.+..++.. +.. .|+++|.++...+.|++++...+..++.++++|.........+||.|++.....
T Consensus 73 g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~ 152 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVP 152 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBBS
T ss_pred CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeeccc
Confidence 579999999999999999887 443 799999999999999999999888899999999876433456899999876653
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
. +-..+.+.|++||++++..-
T Consensus 153 ~---------------------ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 153 E---------------------IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-----------------------HHHHHTEEEEEEEEEEES
T ss_pred h---------------------HHHHHHHhcCCCcEEEEEEc
Confidence 2 22446788999999987543
No 115
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.39 E-value=4.1e-12 Score=113.51 Aligned_cols=111 Identities=19% Similarity=0.265 Sum_probs=87.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC--ceEEEEcccCCCC-CCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK--EVKVLEADMLDLP-FSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~-~~~~~~D~v~~~~~l 77 (201)
|++|||+|||+|.++..++..|..+|+++|+|+.+++.+++++..++.. +++++++|+.+.. ...++||+|+++
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD--- 615 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID--- 615 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC---
Confidence 5789999999999999999987768999999999999999999988764 7999999987531 114689999974
Q ss_pred ceeeecCCCCCCCCC-------ccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 78 EVLFVNSGDPWNPQP-------ETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
+|.+... ....+...++..+.++|+|||.+++.+...
T Consensus 616 --------PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 616 --------PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred --------CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 3332211 123456788999999999999988766543
No 116
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=3.4e-12 Score=108.05 Aligned_cols=122 Identities=12% Similarity=0.133 Sum_probs=88.5
Q ss_pred CCcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l 77 (201)
|.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...+.+++.++++|+..++ ...++||.|++....
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 5689999999999999988763 2399999999999999999999888878899999988764 335689999963221
Q ss_pred ---ceeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 78 ---EVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 78 ---~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
..+-.+.+..|...++.. ....+++.++.+.|+|||.+++.+++.
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 111000001111111111 124678999999999999999888764
No 117
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.39 E-value=1.9e-11 Score=99.46 Aligned_cols=98 Identities=17% Similarity=0.094 Sum_probs=78.3
Q ss_pred CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+.+|||+|||+|.++..+++... ..|+++|+++++++.+++++...+.+++.++++|+.......++||+|++....+
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVD 160 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchH
Confidence 46899999999999999988643 2799999999999999999988887789999999876544446799999754432
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.....+.+.|+|||++++..
T Consensus 161 ---------------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 161 ---------------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ---------------------HhHHHHHHhcCCCCEEEEEe
Confidence 22344678899999988754
No 118
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.38 E-value=7.6e-12 Score=106.02 Aligned_cols=121 Identities=15% Similarity=0.265 Sum_probs=86.2
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEE--EEcccCCCCC--CCCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKV--LEADMLDLPF--SNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~~~~~--~~~~~D~v~~~~ 75 (201)
|.+|||+|||+|..+..++.... .+++++|+++.+++.++++++..+.. +.+ ..+|....+. +.++||.|++..
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccccccccCEEEEcC
Confidence 57899999999999999988643 39999999999999999999888764 444 6666654432 456899999532
Q ss_pred c---cceeeecCCCCCCCCCccHHH----HHHHHHHHhhcccCCcEEEEEecCC
Q 028957 76 T---MEVLFVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 76 ~---l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
. +..+-.++...|...++...+ ..+++.++.++|||||++++.+++-
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 111111223334333322222 4789999999999999999987764
No 119
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.37 E-value=3.5e-12 Score=96.59 Aligned_cols=107 Identities=24% Similarity=0.367 Sum_probs=74.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDV 70 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~ 70 (201)
|.+|||+|||+|.++..++.... .+++++|+++.+ ..+++.++++|+.+.. .+.++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 57899999999999998887642 279999999854 1246788888987532 34568999
Q ss_pred EEeccccceeeecCCCCCC-CCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 71 VIEKATMEVLFVNSGDPWN-PQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 71 v~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
|++....+.. + .|. ..+........+++.+.++|+|||++++..+...
T Consensus 102 V~~~~~~~~~----g-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~ 150 (188)
T TIGR00438 102 VMSDAAPNIS----G-YWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE 150 (188)
T ss_pred EEcCCCCCCC----C-CccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence 9986543211 0 011 1111223457899999999999999998665443
No 120
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.37 E-value=1.4e-11 Score=97.31 Aligned_cols=106 Identities=22% Similarity=0.334 Sum_probs=79.7
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-C-CCCCceeEEEeccccc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-P-FSNDCFDVVIEKATME 78 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~~D~v~~~~~l~ 78 (201)
.+|||+|||+|.++..++..... +++++|+++.+++.+++++..++ ++++++|+.+. + ...++||+|+++-
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NP--- 161 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANA--- 161 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECC---
Confidence 47999999999999999876433 89999999999999999987654 47888998652 1 1135799999853
Q ss_pred eeeecCCCCCCCC----------------------CccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 79 VLFVNSGDPWNPQ----------------------PETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 79 ~~~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
||.+. ....+.+..+++.+.+.|+|||.+++....
T Consensus 162 --------Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 162 --------PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred --------CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 33321 112233568888999999999999976543
No 121
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=1e-11 Score=105.84 Aligned_cols=120 Identities=16% Similarity=0.231 Sum_probs=87.6
Q ss_pred CCcEEEecCCCChhhHHHHhcC-C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~ 76 (201)
+.+|||+|||+|..+..++... . .+|+++|+++.+++.+++++...++.++.++++|+.... ++ ++||+|++...
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 4689999999999999998863 2 399999999999999999999888778999999997753 33 68999997532
Q ss_pred c---ceeeecCCCCCCCCCccHHH----HHHHHHHHhhcccCCcEEEEEecC
Q 028957 77 M---EVLFVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 77 l---~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
. ..+-.++...|...+..... ...+++++.++|+|||++++.+++
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 1 11111112223222211111 356899999999999999987655
No 122
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.36 E-value=1e-11 Score=107.10 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=83.4
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
.+|||+|||+|.++..++...+. +|+++|+|+.+++.++++....+. +++.++++|+.. ..+.++||+|+++-.+-.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCC
Confidence 47999999999999988876433 999999999999999999887764 468999999765 233468999998643211
Q ss_pred ee-----------ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 80 LF-----------VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 80 ~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
.- ..+...+.-...+...+.++++.+.+.|+|||.+++.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 00 0000001112223345678899999999999998864
No 123
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.36 E-value=5.2e-11 Score=90.70 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-CCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-PFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|||+|||+|.++..++.++..+|+++|.++.+++.+++++...+..++.++++|+... +....+||+|+++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~D----- 128 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVD----- 128 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEEC-----
Confidence 4689999999999999776666669999999999999999999888877899999998752 2223469999974
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhh--cccCCcEEEEEec
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHR--VLKPDGLFISVSF 120 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~~~~~ 120 (201)
+|+.. .....+++.+.+ .|+|+|.+++...
T Consensus 129 ------PPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 129 ------PPFRK-----GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ------CCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 33321 223445555544 4789888776543
No 124
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.35 E-value=2.9e-11 Score=97.75 Aligned_cols=108 Identities=22% Similarity=0.283 Sum_probs=90.3
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
|..|||--||||++..++...|. +++|+|++..|++.++.|+...++....+... |+..++++.+++|.|++
T Consensus 198 G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat------ 270 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT------ 270 (347)
T ss_pred CCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe------
Confidence 57899999999999999998988 99999999999999999999988767766666 99999998888999997
Q ss_pred eeecCCCCCCCCC----cc-HHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 80 LFVNSGDPWNPQP----ET-VTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 80 ~~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
++|+.-.. .. .+-+.++++.+.++|++||++++..+
T Consensus 271 -----DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 271 -----DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -----cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 34554211 11 23478999999999999999988765
No 125
>PRK00811 spermidine synthase; Provisional
Probab=99.35 E-value=1.5e-11 Score=98.86 Aligned_cols=107 Identities=23% Similarity=0.360 Sum_probs=81.9
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhc-----CCCceEEEEcccCCC-CCCCCceeEEEe
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLK-----GYKEVKVLEADMLDL-PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~-~~~~~~~D~v~~ 73 (201)
+++||++|||+|..+.++++. +..+|+++|+++.+++.+++.+... .-++++++.+|+... ....++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 478999999999999999887 4459999999999999999987642 135789999998763 234578999997
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
.. .+|+.+.. .--...+++.+.+.|+|||.+++.
T Consensus 157 D~---------~dp~~~~~--~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 157 DS---------TDPVGPAE--GLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CC---------CCCCCchh--hhhHHHHHHHHHHhcCCCcEEEEe
Confidence 42 24442211 112468899999999999998865
No 126
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.34 E-value=8.3e-12 Score=98.07 Aligned_cols=97 Identities=20% Similarity=0.333 Sum_probs=82.2
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
.+|+|||+|+|.++..+++..+. +++..|+ +++++.+++ .++++++.+|++ .+++. +|+++...++|.+
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS
T ss_pred cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH-hhhcc--ccceeeehhhhhc
Confidence 57999999999999999999777 9999998 888888877 359999999998 46654 9999999999986
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCC--cEEEEEecC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD--GLFISVSFG 121 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g--G~l~~~~~~ 121 (201)
+.++..++|+++++.|+|| |++++.+..
T Consensus 172 -------------~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 172 -------------SDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp --------------HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred -------------chHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 6688999999999999999 999988764
No 127
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.34 E-value=4.9e-12 Score=96.22 Aligned_cols=89 Identities=27% Similarity=0.397 Sum_probs=70.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-C-CCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-L-PFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~v~~~~~l~ 78 (201)
+++|||+|||+|.++..+++.....++++|+++++++.++++ +++++++|+.. + ++++++||+|+++.++|
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 468999999999999888766433789999999999888642 56788888865 3 35678899999999988
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP 111 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 111 (201)
++ .+..++++++.+.+++
T Consensus 87 ~~---------------~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 AT---------------RNPEEILDEMLRVGRH 104 (194)
T ss_pred cC---------------cCHHHHHHHHHHhCCe
Confidence 76 4567788888876553
No 128
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=7.8e-12 Score=96.70 Aligned_cols=105 Identities=26% Similarity=0.338 Sum_probs=86.0
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
|++|||.|.|+|.++..++.. ++. +|+.+|..++..+.|++|+...++.+ +.+..+|+.+.... ..||+|+
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~vDav~----- 168 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDVDAVF----- 168 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-cccCEEE-----
Confidence 689999999999999999975 553 99999999999999999999887555 88888998875443 3677776
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccc
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFR 126 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 126 (201)
.|.++|| ++++.+..+|+|||.+++..++.....
T Consensus 169 ----LDmp~PW-----------~~le~~~~~Lkpgg~~~~y~P~veQv~ 202 (256)
T COG2519 169 ----LDLPDPW-----------NVLEHVSDALKPGGVVVVYSPTVEQVE 202 (256)
T ss_pred ----EcCCChH-----------HHHHHHHHHhCCCcEEEEEcCCHHHHH
Confidence 3556777 689999999999999988776654433
No 129
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.32 E-value=1.3e-11 Score=93.81 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=82.0
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 81 (201)
.+.||+|||-|..|..++...+.+|..+|..+..++.|++.+......-.++.+..+.+...+.++||+|++.+++.++
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL- 135 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL- 135 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccC-
Confidence 4789999999999998877767799999999999999998765522223577888888766556799999999999988
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
..++..++|+++...|+|+|.+++-+..
T Consensus 136 ------------TD~dlv~fL~RCk~~L~~~G~IvvKEN~ 163 (218)
T PF05891_consen 136 ------------TDEDLVAFLKRCKQALKPNGVIVVKENV 163 (218)
T ss_dssp -------------HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ------------CHHHHHHHHHHHHHhCcCCcEEEEEecC
Confidence 6789999999999999999999986643
No 130
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.32 E-value=2.1e-11 Score=92.15 Aligned_cols=110 Identities=24% Similarity=0.352 Sum_probs=84.7
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~ 80 (201)
.-|||||||+|.-+..+...|. .++|+|+|+.|++.|.+..- .-.++.+|+-. +|++.++||-||+...+.++
T Consensus 52 ~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 52 GLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----EGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred cEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----hcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 4699999999999988888885 99999999999999987421 12567777764 78999999999998888766
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+ |.+. ....+...+..++..++.+|++|++.++..+.
T Consensus 126 c-nA~~---s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 126 C-NADK---SLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred c-ccCc---cccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 3 2221 11223455778899999999999998876543
No 131
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.31 E-value=1.2e-11 Score=106.57 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=91.5
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccccc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKATME 78 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~ 78 (201)
..+||+|||.|.++..+|...+. .++|+|+....+..+.++....++.|+.+++.|+..+. ++++++|.
T Consensus 349 p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~-------- 420 (506)
T PRK01544 349 KVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDG-------- 420 (506)
T ss_pred ceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccE--------
Confidence 46899999999999999999777 99999999999988888887778889999888875432 44455554
Q ss_pred eeeecCCCCCCCCCccHHHH--HHHHHHHhhcccCCcEEEEEecCC
Q 028957 79 VLFVNSGDPWNPQPETVTKV--MAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
++.+|++||.++.+++..+ ..+++.+.+.|+|||.+.+.+-..
T Consensus 421 -i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 421 -IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred -EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 4556789999988777664 689999999999999999876543
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.31 E-value=2.8e-11 Score=90.12 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=63.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+++|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. .++++++.+|+.+++++..++|.|+++..++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~-~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAA-RVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCC-eEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 36899999999999999998854 999999999999999988754 3589999999998877666799999865543
No 133
>PRK04457 spermidine synthase; Provisional
Probab=99.29 E-value=2.3e-11 Score=96.61 Aligned_cols=111 Identities=16% Similarity=0.291 Sum_probs=82.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCC-CCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDL-PFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~-~~~~~~~D~v~~~~~l 77 (201)
+++|||+|||+|.++..++...+. +++++|+++++++.+++++.... .++++++.+|+... ....++||+|++.. +
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~ 145 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-F 145 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-C
Confidence 468999999999999999887554 99999999999999999876543 36899999998652 22236899999742 1
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
+.. ..| . .-....+++++.+.|+|||.+++..+..
T Consensus 146 ~~~----~~~-----~-~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 146 DGE----GII-----D-ALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCC----CCc-----c-ccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 110 001 0 0123689999999999999999865443
No 134
>PTZ00146 fibrillarin; Provisional
Probab=99.28 E-value=5.2e-11 Score=94.94 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=73.5
Q ss_pred CCcEEEecCCCChhhHHHHhcC-CC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC---CCCCCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-IT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL---PFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D~v~~~~ 75 (201)
+++|||+|||+|.++..++... .. .|+++|+++.+.+.+.+..... +++.++..|+... .....++|+|++..
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 4689999999999999999873 33 8999999988776665544332 4889999998642 12235789998754
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
. .| .....++.++.++|||||.+++.
T Consensus 211 a---------~p--------dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 211 A---------QP--------DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred C---------Cc--------chHHHHHHHHHHhccCCCEEEEE
Confidence 2 11 24456777899999999999984
No 135
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.28 E-value=5.3e-12 Score=96.56 Aligned_cols=99 Identities=17% Similarity=0.303 Sum_probs=72.1
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 81 (201)
.++|+|||+|..++.++.. +++|+|+|+++.|++.+++.....-. ........++..+.-.+++.|+|++..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 6899999999777777766 55999999999999988876432211 01122223333333347899999999999875
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+..++.++++++||+.|-++.+
T Consensus 114 ---------------dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 ---------------DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ---------------chHHHHHHHHHHcCCCCCEEEE
Confidence 5689999999999888854444
No 136
>PHA03411 putative methyltransferase; Provisional
Probab=99.27 E-value=7.4e-11 Score=93.18 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=81.0
Q ss_pred CcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
.+|||+|||+|.++..++.+. ..+|+++|+++.+++.+++++ +++.++++|+..... ..+||+|+++..++..
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES-NEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc-cCCCcEEEEcCCcccc
Confidence 589999999999998887764 239999999999999998763 368899999987543 4689999998776553
Q ss_pred eecCCCCCCC---CCccHHH--HHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 81 FVNSGDPWNP---QPETVTK--VMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 81 ~~~~~~~~~~---~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
-......|.. .....+. ..+++.....+|+|+|.++++-.+.|.
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~ 188 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY 188 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc
Confidence 1000000000 0000000 357788888999999988776544443
No 137
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.26 E-value=2.5e-11 Score=93.76 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=82.7
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh-c-----------CCCceEEEEcccCCCCCCC-Cce
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-K-----------GYKEVKVLEADMLDLPFSN-DCF 68 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~-~-----------~~~~i~~~~~d~~~~~~~~-~~~ 68 (201)
.+||..|||.|.....++..|. +|+|+|+++.+++.+.+.... . ...+|++.++|.+.++... ++|
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f 117 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF 117 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred CeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence 5899999999999999999998 999999999999998443211 0 1236789999999875332 589
Q ss_pred eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
|+|+-..+|+++ +.+...+..+.+.++|+|||.+++++.
T Consensus 118 D~iyDr~~l~Al-------------pp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 118 DLIYDRTFLCAL-------------PPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp EEEEECSSTTTS--------------GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred eEEEEecccccC-------------CHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 999999889887 456788999999999999999555443
No 138
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.25 E-value=5.8e-11 Score=98.44 Aligned_cols=113 Identities=21% Similarity=0.248 Sum_probs=91.3
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCC----CCCCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDL----PFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~----~~~~~~~D~v~~~ 74 (201)
|++||++.|-||.++..++..|..+|++||+|...++.+++|+..+++ .++.++++|++.. .-...+||+|+..
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 689999999999999999999988999999999999999999999885 4578999999863 1334589999962
Q ss_pred cccceeeecCCCCCCCC-----CccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 75 ATMEVLFVNSGDPWNPQ-----PETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
+|=+-+ .....+...++..+.++|+|||.+++++++...
T Consensus 298 -----------PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 298 -----------PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred -----------CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 222210 122456789999999999999999998876543
No 139
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.25 E-value=1.5e-10 Score=87.10 Aligned_cols=106 Identities=20% Similarity=0.331 Sum_probs=78.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-C---CCCCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P---FSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~---~~~~~~D~v~~~~ 75 (201)
|.++||+.||+|.++.+.+.+|..+|+.+|.++..++.+++|+...+.. ++.++..|+... . ....+||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl-- 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL-- 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE--
Confidence 5789999999999999999999999999999999999999999888754 488999997542 1 24678999996
Q ss_pred ccceeeecCCCCCCCCCccHHH-HHHHHHHHh--hcccCCcEEEEEecCC
Q 028957 76 TMEVLFVNSGDPWNPQPETVTK-VMAMLEGVH--RVLKPDGLFISVSFGQ 122 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~--~~L~~gG~l~~~~~~~ 122 (201)
++|+. ... ..++++.+. ..|+++|.+++.....
T Consensus 121 ---------DPPY~-----~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 ---------DPPYA-----KGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -----------STT-----SCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ---------CCCcc-----cchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 34553 233 477777776 7899999888765443
No 140
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.25 E-value=1.1e-10 Score=91.23 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=80.0
Q ss_pred CCcEEEecCCCChhhHHHHhcC-C-CeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC-C-----CCCCceeEE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-I-TAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-P-----FSNDCFDVV 71 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~-----~~~~~~D~v 71 (201)
+++|||+|||+|..+..++... . .+++++|.++++++.++++++..++ ++++++.+|+.+. + .+.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 4789999999999888887652 2 3999999999999999999998875 4699999998763 1 124689999
Q ss_pred EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
++.. .+..+...++.+.+.|+|||.+++-
T Consensus 149 fiDa------------------~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 149 FVDA------------------DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EECC------------------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8531 2355678899999999999997753
No 141
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=7.5e-10 Score=83.86 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=76.2
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-C-C-CC-CceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F-SN-DCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~-~-~~-~~~D~v~~~~ 75 (201)
|++|||++||+|.++.+++.+|..+|+++|.++.+++.+++++...+.. +++++++|+... . . .. ..+|+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~-- 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL-- 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE--
Confidence 5789999999999999999998879999999999999999999888754 689999999542 1 1 12 24788775
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHh--hcccCCcEEEEEec
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVH--RVLKPDGLFISVSF 120 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~~ 120 (201)
++|+.. .....+++.+. .+|+++|.+++...
T Consensus 128 ---------DPPy~~-----~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 ---------DPPFFN-----GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ---------CcCCCC-----CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 334322 22344444443 46888887765543
No 142
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=6.6e-11 Score=87.68 Aligned_cols=73 Identities=26% Similarity=0.345 Sum_probs=63.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
|++|+|+|||||.++...+..|+..|+|+|+++++++.+++|.... ..++.++..|+.+.. ..+|.|+.|-.|
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchhhcC---CccceEEECCCC
Confidence 4689999999999999999999889999999999999999998873 458999999998864 678888876433
No 143
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.23 E-value=7.5e-11 Score=90.35 Aligned_cols=109 Identities=16% Similarity=0.318 Sum_probs=79.5
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcC-----CC-------------------------
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG-----YK------------------------- 49 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~-----~~------------------------- 49 (201)
++.+||+||.+|.++..+++. ++..++|+|+++..++.|+++++... +.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 467999999999999999987 55599999999999999999865331 00
Q ss_pred -----ceEEEEcccC-----CCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 50 -----EVKVLEADML-----DLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 50 -----~i~~~~~d~~-----~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
++.+...+.. -+.+....||+|+|-.+--++..| .+.+.+..+++++.++|.|||++++.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLN---------wgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLN---------WGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecc---------cccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1111111100 012345689999986666566555 35588999999999999999998853
No 144
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.22 E-value=1.3e-10 Score=97.21 Aligned_cols=156 Identities=38% Similarity=0.542 Sum_probs=131.2
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceeee
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFV 82 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~ 82 (201)
+++.+|||...++..+...|+..++.+|+|+..++.+..+.. ...+.+.+...|+..+.+++.+||+|+..+.+|+++.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 689999999999999999999999999999999999887764 3345789999999999999999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC--CcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeCCC
Q 028957 83 NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG--QPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKR 160 (201)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (201)
+++.+|++ ......+.++.+++++||+++.+++. .|..+...+......|...............+.+.+|..
T Consensus 130 de~a~~~~-----~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~ 204 (482)
T KOG2352|consen 130 DEDALLNT-----AHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQ 204 (482)
T ss_pred Cchhhhhh-----HHhhHHHhhHHHHhccCCEEEEEEeeeeccCCCCeeeeecCccchhhhhhhccCcceEEEEeccCcc
Confidence 99999854 56778999999999999999988884 456555555555566777777777777888888888776
Q ss_pred Cchh
Q 028957 161 SSAD 164 (201)
Q Consensus 161 ~~~~ 164 (201)
....
T Consensus 205 ~~~~ 208 (482)
T KOG2352|consen 205 YSTP 208 (482)
T ss_pred ccch
Confidence 6553
No 145
>PLN02672 methionine S-methyltransferase
Probab=99.21 E-value=2.1e-10 Score=105.24 Aligned_cols=142 Identities=22% Similarity=0.270 Sum_probs=93.4
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC----------------CCceEEEEcccCCCCCC
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG----------------YKEVKVLEADMLDLPFS 64 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~----------------~~~i~~~~~d~~~~~~~ 64 (201)
.+|||+|||+|.++..++...+. +|+++|+|+++++.+++|...++ ..+++++++|+.+....
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 57999999999999999987653 99999999999999999987643 23689999998763211
Q ss_pred -CCceeEEEeccccc------ee---eecC-----------CCCCCC---CCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 65 -NDCFDVVIEKATME------VL---FVNS-----------GDPWNP---QPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 65 -~~~~D~v~~~~~l~------~~---~~~~-----------~~~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
..+||+|++|-..= .+ ..+. -.+..- ...+..-+++++.+..+.|+|||.+++..-
T Consensus 200 ~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 200 NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 13699999863310 00 0000 000100 123444568899999999999999887654
Q ss_pred CCccc-cc-ccccCCCCceEEEEEE
Q 028957 121 GQPHF-RR-PFFNAPQFTWSVEWIT 143 (201)
Q Consensus 121 ~~~~~-~~-~~~~~~~~~~~~~~~~ 143 (201)
..+.. .. .++...++.-...|..
T Consensus 280 ~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 280 GRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ccHHHHHHHHHHHHCCCCeeEEeee
Confidence 43322 22 2444444444444443
No 146
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.21 E-value=5.9e-11 Score=95.59 Aligned_cols=103 Identities=18% Similarity=0.319 Sum_probs=84.2
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+++|||+|||+|-++...|++|..+|+++|.+. +.+.+.+....++..+ ++++.+.+.++.+|..+.|+|++-+.=++
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence 578999999999999999999988999999865 4588888888888655 78999999987777789999999776666
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
++.+ .-+..++-.--+.|+|||.++
T Consensus 140 Ll~E------------sMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 140 LLYE------------SMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHh------------hhhhhhhhhhhhccCCCceEc
Confidence 5433 334556666668899999977
No 147
>PLN02366 spermidine synthase
Probab=99.20 E-value=2.9e-10 Score=92.13 Aligned_cols=107 Identities=17% Similarity=0.277 Sum_probs=80.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhc----CCCceEEEEcccCCC-C-CCCCceeEEEe
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLK----GYKEVKVLEADMLDL-P-FSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~----~~~~i~~~~~d~~~~-~-~~~~~~D~v~~ 73 (201)
+++||++|||.|..+.++++... .+|+.+|+++.+++.+++.+... .-++++++.+|+... . .+.++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 47899999999999999988743 48999999999999999987642 135899999998642 1 23568999996
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
.. .+|+.+ ...--...+++.+.+.|+|||.++..
T Consensus 172 D~---------~dp~~~--~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 172 DS---------SDPVGP--AQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred cC---------CCCCCc--hhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 32 234322 11122468899999999999998764
No 148
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.19 E-value=1.7e-10 Score=90.38 Aligned_cols=103 Identities=27% Similarity=0.412 Sum_probs=79.2
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCC---CCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFS---NDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~---~~~~D~v~~~ 74 (201)
|++|||.|.|+|.++..+++. ++. +|+..|..++..+.|++++...++. ++.+...|+....+. ...+|.|+
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Davf-- 118 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVF-- 118 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEE--
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEE--
Confidence 689999999999999999976 544 9999999999999999999998864 799999999754442 24567666
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcc-cCCcEEEEEecCCc
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL-KPDGLFISVSFGQP 123 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~~~~~~~~ 123 (201)
.|-++|| .++..+.+.| ++||++.+..++..
T Consensus 119 -------LDlp~Pw-----------~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 119 -------LDLPDPW-----------EAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp -------EESSSGG-----------GGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred -------EeCCCHH-----------HHHHHHHHHHhcCCceEEEECCCHH
Confidence 4556777 4778888999 89999888766543
No 149
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.19 E-value=1.6e-10 Score=86.42 Aligned_cols=106 Identities=22% Similarity=0.288 Sum_probs=72.2
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcC---CCceEEEEcccCCCC----CCCCceeEEE
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDLP----FSNDCFDVVI 72 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~----~~~~~~D~v~ 72 (201)
+.+|||||||+|..+..++.. +..+|+.+|.++ .++.++.++..++ ..++.+...|+.+.. ....+||+|+
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Il 124 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVIL 124 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEE
Confidence 578999999999999999888 555999999998 9999999988764 356788888876521 3346899999
Q ss_pred eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
++-++. ..+....+++.+.++|+++|.+++....+
T Consensus 125 asDv~Y---------------~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 125 ASDVLY---------------DEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EES--S----------------GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred Eecccc---------------hHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 966653 23667889999999999999966655433
No 150
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.19 E-value=2.1e-10 Score=97.74 Aligned_cols=99 Identities=19% Similarity=0.320 Sum_probs=75.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~v~~~~~ 76 (201)
+.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++..++..+++++++|+.+. ++..++||+|+++
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d-- 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD-- 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC--
Confidence 46899999999999999998865 9999999999999999999888877899999998652 2334679999863
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+|+ ......++.+.+ ++|++.+++.+
T Consensus 375 ---------PPr-------~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 ---------PPR-------AGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ---------cCC-------cChHHHHHHHHh-cCCCeEEEEEe
Confidence 222 112345555555 57877766553
No 151
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.16 E-value=1.4e-10 Score=90.17 Aligned_cols=92 Identities=24% Similarity=0.372 Sum_probs=72.5
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 81 (201)
.++||||+|.|..+..++.... +|+++|.|+.|....+++ ..+++..+ +..-.+.+||+|.|-++++..
T Consensus 96 ~~lLDlGAGdG~VT~~l~~~f~-~v~aTE~S~~Mr~rL~~k-------g~~vl~~~--~w~~~~~~fDvIscLNvLDRc- 164 (265)
T PF05219_consen 96 KSLLDLGAGDGEVTERLAPLFK-EVYATEASPPMRWRLSKK-------GFTVLDID--DWQQTDFKFDVISCLNVLDRC- 164 (265)
T ss_pred CceEEecCCCcHHHHHHHhhcc-eEEeecCCHHHHHHHHhC-------CCeEEehh--hhhccCCceEEEeehhhhhcc-
Confidence 5799999999999999987644 899999999997776653 33333222 222234689999999999877
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
.++..+++.+++.|+|+|++++.
T Consensus 165 --------------~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 165 --------------DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred --------------CCHHHHHHHHHHHhCCCCEEEEE
Confidence 56789999999999999998864
No 152
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.16 E-value=1.6e-10 Score=92.26 Aligned_cols=112 Identities=21% Similarity=0.297 Sum_probs=82.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCCC-C--CCCCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLDL-P--FSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~~-~--~~~~~~D~v~~~~ 75 (201)
|++|||+.|-||.++..++..|..+|+++|.|..+++.+++|+..++. .++++++.|+.+. . -..++||+|++.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD- 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD- 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC-
Confidence 589999999999999999888877999999999999999999998874 4789999999762 1 124689999962
Q ss_pred ccceeeecCCCCCC-C-CCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 76 TMEVLFVNSGDPWN-P-QPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 76 ~l~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
+|=+ + ...-..++.+++..+.++|+|||.+++++++..
T Consensus 203 ----------PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 203 ----------PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp -----------SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred ----------CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 1111 1 112234678899999999999999988776543
No 153
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.16 E-value=2.7e-10 Score=91.04 Aligned_cols=108 Identities=22% Similarity=0.337 Sum_probs=79.4
Q ss_pred CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC-CCCCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~-~~~~~~~D~v~~~ 74 (201)
+++||++|||+|..+..+++.. ..+++++|+++++++.+++.+.... .++++++.+|+... ....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 4689999999999999988875 3489999999999999999875432 25688888887642 2224689999974
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.. +|+.+. ..--...+++.+.+.|+|||.+++..
T Consensus 153 ~~---------~~~~~~--~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 153 ST---------DPVGPA--ETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CC---------CCCCcc--cchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 32 122110 00114688999999999999998763
No 154
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.16 E-value=2.2e-10 Score=93.43 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=62.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~ 74 (201)
+.+|||+|||+|.++..++..+. +|+++|+++.+++.++++....++++++++++|+..... ..++||+|+++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 46899999999999999999875 999999999999999999988888789999999976432 23579999963
No 155
>PHA03412 putative methyltransferase; Provisional
Probab=99.16 E-value=3.7e-10 Score=87.34 Aligned_cols=105 Identities=18% Similarity=0.260 Sum_probs=73.6
Q ss_pred CCcEEEecCCCChhhHHHHhcC----CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG----ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~----~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 76 (201)
+.+|||+|||+|.++..+++.. ..+|+++|+++.+++.++++. +++.++..|+....+ .++||+|++|-.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-cCCccEEEECCC
Confidence 3689999999999999888752 228999999999999999774 357899999876554 468999999866
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 114 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 114 (201)
+...- ..+ +.-..........+++...+++++|+.
T Consensus 124 Y~~~~--~~d-~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIK--TSD-FKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCcc--ccc-cCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 65320 000 000001123356788898886666554
No 156
>PRK01581 speE spermidine synthase; Validated
Probab=99.15 E-value=4.2e-10 Score=92.17 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=79.3
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHH--Hh---h--cCCCceEEEEcccCCC-CCCCCceeEE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQER--LL---L--KGYKEVKVLEADMLDL-PFSNDCFDVV 71 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~--~~---~--~~~~~i~~~~~d~~~~-~~~~~~~D~v 71 (201)
+++||++|||+|..+..+++... .+|+++|+++++++.|++. +. . ..-++++++.+|+... ....++||+|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 47899999999999998888743 4999999999999999962 11 1 1136899999999863 3345689999
Q ss_pred EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
++.. .+|.... ....-...+++.+++.|+|||.++...
T Consensus 231 IvDl---------~DP~~~~-~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 231 IIDF---------PDPATEL-LSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEcC---------CCccccc-hhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9642 1222110 111223679999999999999987654
No 157
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.13 E-value=4.2e-10 Score=86.08 Aligned_cols=100 Identities=24% Similarity=0.320 Sum_probs=80.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC-C-----CCCCceeEE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL-P-----FSNDCFDVV 71 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~-~-----~~~~~~D~v 71 (201)
+++|||+|+++|+-+..++...+. +++.+|.+++..+.|++++...+. .+|+++.+|+... + .+.++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 478999999999999999987432 999999999999999999988774 5799999998752 1 123589999
Q ss_pred EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+.. + .+..+...++.+.+.|+|||.+++-
T Consensus 126 FiD----a--------------~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 126 FID----A--------------DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEE----S--------------TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEc----c--------------cccchhhHHHHHhhhccCCeEEEEc
Confidence 952 2 3466788899999999999998864
No 158
>PLN02476 O-methyltransferase
Probab=99.13 E-value=7.6e-10 Score=88.08 Aligned_cols=100 Identities=11% Similarity=0.108 Sum_probs=81.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-C-eEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC-C-C----CCCceeEE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL-P-F----SNDCFDVV 71 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~-~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~-~-~----~~~~~D~v 71 (201)
+++|||+|+++|+.+..++...+ . +++++|.+++..+.|+++++..++. +++++.+|+.+. + + ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 47899999999999999987532 2 8999999999999999999988864 799999998652 1 1 13579999
Q ss_pred EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+.. . .+..+...++.+.+.|+|||.+++-
T Consensus 199 FID----a--------------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 199 FVD----A--------------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEC----C--------------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 852 1 3467889999999999999998853
No 159
>PRK03612 spermidine synthase; Provisional
Probab=99.12 E-value=4.2e-10 Score=97.57 Aligned_cols=109 Identities=26% Similarity=0.298 Sum_probs=80.1
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHH--Hhhc-----CCCceEEEEcccCCC-CCCCCceeEE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQER--LLLK-----GYKEVKVLEADMLDL-PFSNDCFDVV 71 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~--~~~~-----~~~~i~~~~~d~~~~-~~~~~~~D~v 71 (201)
+++|||+|||+|..+.++++... .+++++|+++++++.++++ +... .-++++++.+|+.+. ....++||+|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI 377 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI 377 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence 46899999999999999988754 5999999999999999983 2211 125789999998763 2234689999
Q ss_pred EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+++. .+|+.+.. ..--...+++.+.+.|+|||.+++..
T Consensus 378 i~D~---------~~~~~~~~-~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 378 IVDL---------PDPSNPAL-GKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEeC---------CCCCCcch-hccchHHHHHHHHHhcCCCeEEEEec
Confidence 9752 23332211 11123578999999999999988754
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.12 E-value=5.1e-10 Score=85.88 Aligned_cols=100 Identities=22% Similarity=0.298 Sum_probs=82.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-C-eEEEEECCHHHHHHHHHHHhhcCCCc-eEEEE-cccCCC-C-CCCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKGYKE-VKVLE-ADMLDL-P-FSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~-~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~-~d~~~~-~-~~~~~~D~v~~~ 74 (201)
+++|||+|.+.|+-+..++...+ . +++++|.++++.+.|+++++..++.. +..+. +|+.+. . ...++||+|+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI- 138 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI- 138 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE-
Confidence 47899999999999999998855 3 99999999999999999999988544 77777 576642 2 34689999994
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
++ .+....++++.+.++|+|||.+++-
T Consensus 139 ---Da--------------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 139 ---DA--------------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ---eC--------------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 22 3467889999999999999998863
No 161
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.11 E-value=2.9e-09 Score=77.31 Aligned_cols=103 Identities=24% Similarity=0.435 Sum_probs=84.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CCCCceeEEEe
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~~ 73 (201)
|.-|||+|.|||-++..++++|.. .++++|.+++......+.+ +.++++.+|+.++. .+...||.|+|
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~viS 123 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSVIS 123 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeEEe
Confidence 457999999999999999999754 9999999999999998775 45678999988754 56678999998
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
.-.+-.+ ......++++.+...|.+||.++..+++
T Consensus 124 ~lPll~~-------------P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 124 GLPLLNF-------------PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ccccccC-------------cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 6544332 3355678999999999999999988876
No 162
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=7.9e-09 Score=77.16 Aligned_cols=107 Identities=23% Similarity=0.274 Sum_probs=79.0
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCC-C-CCC-CceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDL-P-FSN-DCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~-~-~~~-~~~D~v~~~~~ 76 (201)
|.++||+.+|+|.++.+.+.+|...++.+|.+......+++|++..+ ..+..++..|+... . ... ++||+|+.
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl--- 120 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL--- 120 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe---
Confidence 57999999999999999999999999999999999999999998877 45688888888743 1 222 24999985
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHH--HhhcccCCcEEEEEecC
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEG--VHRVLKPDGLFISVSFG 121 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~L~~gG~l~~~~~~ 121 (201)
|+|+.. ..-+....+.. -...|+|+|.+++....
T Consensus 121 --------DPPy~~---~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 121 --------DPPYAK---GLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred --------CCCCcc---chhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 344421 11211233333 45679999998876543
No 163
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=6.5e-09 Score=76.51 Aligned_cols=137 Identities=20% Similarity=0.305 Sum_probs=90.4
Q ss_pred CcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 2 TSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
..++|+|||+|..+..+++. ++. .+.++|+++.+++...+-...++. ++..++.|+.+. +..++.|+++.+-.+--
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 46899999999999999887 433 899999999999999888777764 688899998763 33488999986422200
Q ss_pred eeecCCCC---------CCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccccc--ccccCCCCceEEEEEE
Q 028957 80 LFVNSGDP---------WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRR--PFFNAPQFTWSVEWIT 143 (201)
Q Consensus 80 ~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 143 (201)
.++.| |--...+.+-..+++..+-.+|.|.|.++++........+ .+++..++.-...+..
T Consensus 123 ---t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 123 ---TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred ---CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEE
Confidence 00000 1101122233677888888999999999988665433322 2233444444444443
No 164
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.09 E-value=8.6e-10 Score=83.46 Aligned_cols=105 Identities=20% Similarity=0.273 Sum_probs=85.9
Q ss_pred cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceE-EEEcccCCCCC--------CCCceeEEE
Q 028957 3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADMLDLPF--------SNDCFDVVI 72 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~--------~~~~~D~v~ 72 (201)
+|||||||||..+..+++..+. ...-.|.++.............+.+|+. -+..|+.+.+. ...+||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 4999999999999999999776 8888999999888888877777666653 46777765421 245899999
Q ss_pred eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+.+++|-+ ..+....+++...+.|++||.+++..+
T Consensus 108 ~~N~lHI~-------------p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 108 CINMLHIS-------------PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ehhHHHhc-------------CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 99999987 337789999999999999999997643
No 165
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.08 E-value=9.8e-10 Score=91.67 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=76.1
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~l~~ 79 (201)
+.+|||++||+|.++..++..+. +|+++|+++.+++.++++...+++++++++++|+.+... ..++||+|+++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D----- 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN----- 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC-----
Confidence 35799999999999999997764 999999999999999999988887789999999876321 12458998862
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
+|. . .....+++.+.+ ++|++.+++. +++..
T Consensus 308 ------PPr-----~-G~~~~~l~~l~~-~~p~~ivyvs-c~p~T 338 (374)
T TIGR02085 308 ------PPR-----R-GIGKELCDYLSQ-MAPKFILYSS-CNAQT 338 (374)
T ss_pred ------CCC-----C-CCcHHHHHHHHh-cCCCeEEEEE-eCHHH
Confidence 332 1 112344555543 6887766654 44333
No 166
>PLN02823 spermine synthase
Probab=99.02 E-value=3.2e-09 Score=87.01 Aligned_cols=109 Identities=19% Similarity=0.307 Sum_probs=79.9
Q ss_pred CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC-CCCCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~-~~~~~~~D~v~~~ 74 (201)
+++||.+|+|.|..+.++++.. ..+++++|+++++++.+++.+.... -++++++.+|+... ....++||+|++.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 4689999999999999998864 3489999999999999999875431 36899999998863 3345789999963
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHH-HHhhcccCCcEEEEE
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISV 118 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~ 118 (201)
. .+|+...+...--...+++ .+.+.|+|||.+++.
T Consensus 184 ~---------~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 184 L---------ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred C---------CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 1 1233211101111356787 889999999998764
No 167
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.02 E-value=4.1e-09 Score=79.15 Aligned_cols=106 Identities=22% Similarity=0.315 Sum_probs=76.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-e---------EEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCcee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-A---------ITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFD 69 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~---------v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D 69 (201)
+..|||-.||+|++.++.+..+.. . ++|.|+++.+++.+++|+...+. ..+.+.+.|+.++++..+++|
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 468999999999999998876443 3 88999999999999999988774 358899999999887778999
Q ss_pred EEEeccccceeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEE
Q 028957 70 VVIEKATMEVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+|+++ +||...-... .-+.++++++.+++++ ..+++.
T Consensus 109 ~Ivtn-----------PPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 109 AIVTN-----------PPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp EEEEE-------------STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred EEEEC-----------cchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 99985 4555322222 2356778888899988 444433
No 168
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=8.1e-09 Score=80.69 Aligned_cols=108 Identities=21% Similarity=0.300 Sum_probs=79.5
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCC-----CCCCCCceeEEEec
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLD-----LPFSNDCFDVVIEK 74 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~-----~~~~~~~~D~v~~~ 74 (201)
..|||+|||+|.++..++..-+. .++++|.++.++..|.+|.....+ .++.++..++.. .+...+++|++++|
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecC
Confidence 46999999999999999877444 999999999999999999887763 456666444432 12456889999986
Q ss_pred cccceeeecCCCCCCCCC----------------------ccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 75 ATMEVLFVNSGDPWNPQP----------------------ETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+||++.. ++...+..+..-..|+|+|||.+.+...
T Consensus 230 -----------PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 230 -----------PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred -----------CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 3444311 2223355667778899999999887654
No 169
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.01 E-value=3.2e-09 Score=90.54 Aligned_cols=120 Identities=17% Similarity=0.168 Sum_probs=86.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEe----
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIE---- 73 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~---- 73 (201)
|.+|||+|||+|+-+..++.... ..+++.|+++..++.+++++...++.++.+...|...+. .....||.|+.
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 57899999999999999988632 289999999999999999999999888999999987653 22357999993
Q ss_pred ccccceeeecCCCCCCCCCccH----HHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 74 KATMEVLFVNSGDPWNPQPETV----TKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
++. ..+--+.+.-|.-.++.. ....++|.+..++|||||+++..+++
T Consensus 194 SG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 194 SGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 321 111001000111111111 12478899999999999999988776
No 170
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.01 E-value=2e-09 Score=81.73 Aligned_cols=103 Identities=22% Similarity=0.291 Sum_probs=67.4
Q ss_pred cEEEecCCCChh----hHHHHh---c-CC-C-eEEEEECCHHHHHHHHHHH-------------------hhcC------
Q 028957 3 SVLELGCGNSRL----SEGLYN---D-GI-T-AITCIDLSAVAVEKMQERL-------------------LLKG------ 47 (201)
Q Consensus 3 ~vLDlG~G~G~~----~~~l~~---~-~~-~-~v~~vD~~~~~~~~~~~~~-------------------~~~~------ 47 (201)
+|+..||++|.- +..+.. . .. . +++|+|+|+.+++.|++-. ...+
T Consensus 34 rIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~ 113 (196)
T PF01739_consen 34 RIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVK 113 (196)
T ss_dssp EEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-
T ss_pred EEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEC
Confidence 789999999953 322333 1 11 3 9999999999999998731 0000
Q ss_pred ---CCceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 48 ---YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 48 ---~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
..+|.|...|+.+.+...+.||+|+|.+++-++ +.+...++++.+++.|+|||.|++-
T Consensus 114 ~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-------------~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 114 PELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-------------DPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--------------HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred hHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-------------CHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 136889999988844456889999999998665 5577899999999999999999964
No 171
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.00 E-value=2.8e-09 Score=90.59 Aligned_cols=72 Identities=22% Similarity=0.352 Sum_probs=61.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CCCCCceeEEEe
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~v~~ 73 (201)
+.+|||+|||+|.++..+++... +|+++|+++.+++.+++++..++..+++++.+|+... ....++||+|++
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 36899999999999999988755 8999999999999999999888888999999998652 122457899985
No 172
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.96 E-value=3.5e-09 Score=82.21 Aligned_cols=90 Identities=16% Similarity=0.255 Sum_probs=60.0
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceE-EEEcccC-----CCCCCCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADML-----DLPFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~-----~~~~~~~~~D~v~~~ 74 (201)
+++|||+|||+|.++..+++.|..+|+++|+++.++....+. . +++. +...|+. .+...-..+|+++++
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~---~--~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS 150 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ---D--ERVKVLERTNIRYVTPADIFPDFATFDVSFIS 150 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc---C--CCeeEeecCCcccCCHhHcCCCceeeeEEEee
Confidence 468999999999999999999877999999999877652211 1 1221 2222332 222222467777653
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
. ..++..+.+.|++ |.+++..
T Consensus 151 ~-----------------------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 151 L-----------------------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred h-----------------------HhHHHHHHHHhCc-CeEEEEc
Confidence 2 2368889999999 8766543
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.96 E-value=3.7e-09 Score=83.90 Aligned_cols=72 Identities=22% Similarity=0.371 Sum_probs=61.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
+++|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. .+++.++++|+..++++ .+|.|+++..+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP--EFNKVVSNLPY 101 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch--hceEEEEcCCc
Confidence 46899999999999999999865 899999999999999988754 35899999999887654 47999987554
No 174
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.95 E-value=5.5e-09 Score=84.45 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=84.4
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 81 (201)
...+|+|+|.|..+..++...+ ++-+++++...+-.+...+. . .|..+.+|+++. .|.+ |+|++.+++|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~-~P~~--daI~mkWiLhdw- 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD-TPKG--DAIWMKWILHDW- 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-C---Ccceeccccccc-CCCc--CeEEEEeecccC-
Confidence 4679999999999999999544 89999999877777666653 2 478889999875 4444 799999999986
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
..+++.++|+++++.|+|+|.+++.+...+.
T Consensus 250 ------------tDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 250 ------------TDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred ------------ChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 6689999999999999999999999875443
No 175
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.94 E-value=5.8e-09 Score=83.70 Aligned_cols=101 Identities=19% Similarity=0.327 Sum_probs=78.2
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
++.|||+|||+|.++...++.|.++|++++. .+|.+.|++..+.+. ..+|.++.+.++++.+| ++.|++|+- .+..
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISE-PMG~ 254 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISE-PMGY 254 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEec-cchh
Confidence 4679999999999999999999999999997 558889988887766 56899999999988776 678999863 2333
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
++.| +......-..++.|+|.|.++
T Consensus 255 mL~N------------ERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 255 MLVN------------ERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhh------------HHHHHHHHHHHhhcCCCCccc
Confidence 3222 233333334568999999987
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.94 E-value=5.9e-09 Score=81.89 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=80.2
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-C-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCC-C-C-----CCCceeE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-T-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDL-P-F-----SNDCFDV 70 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~-~-~-----~~~~~D~ 70 (201)
+++|||+|+++|+-+..++...+ . +++++|.+++..+.|++++...+ .++|+++.+|+.+. + + ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 46899999999999999987632 3 99999999999999999999887 46799999998652 2 1 1258999
Q ss_pred EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957 71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117 (201)
Q Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 117 (201)
|+.. + .+......++.+.+.|+|||.+++
T Consensus 160 iFiD----a--------------dK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 160 IFVD----A--------------DKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEec----C--------------CHHHhHHHHHHHHHhcCCCeEEEE
Confidence 9852 1 346678888999999999999775
No 177
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.94 E-value=4.6e-09 Score=84.18 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=75.6
Q ss_pred cEEEecCCCChh----hHHHHhcC----CC-eEEEEECCHHHHHHHHHHH------------------hh-----cC---
Q 028957 3 SVLELGCGNSRL----SEGLYNDG----IT-AITCIDLSAVAVEKMQERL------------------LL-----KG--- 47 (201)
Q Consensus 3 ~vLDlG~G~G~~----~~~l~~~~----~~-~v~~vD~~~~~~~~~~~~~------------------~~-----~~--- 47 (201)
+|+..||.||.- +..+.... .. +|+|+|+|+.+++.|++.. .. .+
T Consensus 118 rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~ 197 (287)
T PRK10611 118 RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVR 197 (287)
T ss_pred EEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEE
Confidence 799999999953 22222321 12 8999999999999998741 00 00
Q ss_pred -----CCceEEEEcccCCCCCC-CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 48 -----YKEVKVLEADMLDLPFS-NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 48 -----~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
...|.|.+.|+.+.+++ .+.||+|+|.+++.++ ..+...++++++.+.|+|||.|++-
T Consensus 198 v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-------------~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 198 VRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-------------DKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-------------CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 13467888888764432 5789999999888665 4567899999999999999987753
No 178
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.93 E-value=7.7e-09 Score=78.18 Aligned_cols=124 Identities=17% Similarity=0.316 Sum_probs=74.9
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 81 (201)
..|-|+|||.+.++..+. .+. .|...|+-+. +-.++..|+..+|+++++.|++++...+-.
T Consensus 74 ~viaD~GCGdA~la~~~~-~~~-~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLSLMG-- 134 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVP-NKH-KVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLSLMG-- 134 (219)
T ss_dssp S-EEEES-TT-HHHHH---S----EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES---S--
T ss_pred EEEEECCCchHHHHHhcc-cCc-eEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhhhhC--
Confidence 468999999999986543 223 7999998431 335788999999999999999997544421
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccc-c-CCCCceEEEEEEeCCeeeEEEEEEEeC
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFF-N-APQFTWSVEWITFGDGFHYFFYILRKG 158 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (201)
.+...++.+..|+||+||.+.+.+..........+ . -....+........+.+.+.+.+.+..
T Consensus 135 --------------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 135 --------------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp --------------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred --------------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 46789999999999999999998765432221111 1 234567777777777766666665555
No 179
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=8.1e-10 Score=84.20 Aligned_cols=104 Identities=20% Similarity=0.368 Sum_probs=87.7
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 81 (201)
..++|+||+-|.+...+...+..+++-+|.|..|++.++.. ....+ .+....+|-+.+++.++++|+++++..+|+.
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslHW~- 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLHWT- 150 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhhhhhhhhhhh-
Confidence 46899999999999999988877999999999999998754 22222 4567888988899999999999999999877
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
.++...+.+++..|||+|.++...+..
T Consensus 151 --------------NdLPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 151 --------------NDLPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred --------------ccCchHHHHHHHhcCCCccchhHHhcc
Confidence 677889999999999999988665543
No 180
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.93 E-value=9.4e-09 Score=82.25 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=59.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 76 (201)
+.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++.. ++++++++|+..++++.-.++.|+++-.
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 46899999999999999999976 999999999999999887643 4899999999887654322477887643
No 181
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.8e-09 Score=76.60 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=65.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
|++++|+|||.|-++...+..+...|+|+|+++++++.+.+|.....+ ++.+.+.|..++.+..+.||.++.+..|
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEeeEEecCCC
Confidence 688999999999999777766777999999999999999999887765 6789999999887778899999975444
No 182
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.93 E-value=6.6e-09 Score=88.26 Aligned_cols=101 Identities=26% Similarity=0.465 Sum_probs=73.5
Q ss_pred CcEEEecCCCChhhHHHHhcC-----CCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCCCCceeEEEecc
Q 028957 2 TSVLELGCGNSRLSEGLYNDG-----ITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKA 75 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~-----~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~ 75 (201)
..|+|+|||+|-++...++++ ..+|+++|-++.+...+++++..++. ++|+++.+|+++...+ .++|+|++=.
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSEl 266 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSEL 266 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE--
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEec
Confidence 569999999999998887764 33999999999888888776565553 6799999999998765 4899999732
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
. ..+ + ..+.....+....+.|||+|.++
T Consensus 267 L-Gsf----g--------~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 L-GSF----G--------DNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTT----B--------TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred c-CCc----c--------ccccCHHHHHHHHhhcCCCCEEe
Confidence 1 111 1 11345667888899999999877
No 183
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.3e-09 Score=78.28 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=77.4
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC--eEEEEECCHHHHHHHHHHHhhcC----------CCceEEEEcccCCCCCCCCc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT--AITCIDLSAVAVEKMQERLLLKG----------YKEVKVLEADMLDLPFSNDC 67 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~--~v~~vD~~~~~~~~~~~~~~~~~----------~~~i~~~~~d~~~~~~~~~~ 67 (201)
|.+.||+|+|+|+++.+++.. +.. .++|||.-++.++.+++++...- ..++.++.+|......+..+
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~ 162 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAP 162 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCC
Confidence 578999999999999999865 333 55999999999999999875432 24678899999887777789
Q ss_pred eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
||.|.+.... .++.+++...|++||++++-
T Consensus 163 YDaIhvGAaa---------------------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 163 YDAIHVGAAA---------------------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cceEEEccCc---------------------cccHHHHHHhhccCCeEEEe
Confidence 9999985332 45667788889999998864
No 184
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.91 E-value=3.5e-10 Score=86.12 Aligned_cols=99 Identities=23% Similarity=0.412 Sum_probs=75.4
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEeccccce
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~ 79 (201)
+++||+|||||..+..+..+.. +++|+|+|..|++.+.++--. + ...++++..+ ......||+|++..++-+
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg~Y---D--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y 200 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKGLY---D--TLYVAEAVLFLEDLTQERFDLIVAADVLPY 200 (287)
T ss_pred ceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhccch---H--HHHHHHHHHHhhhccCCcccchhhhhHHHh
Confidence 5899999999999988876644 899999999999999875211 1 2344444322 144678999999877765
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+ -.+..++.-....|+|||.+.+..-+
T Consensus 201 l---------------G~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 201 L---------------GALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred h---------------cchhhHHHHHHHhcCCCceEEEEecc
Confidence 5 46788899999999999999876544
No 185
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.91 E-value=1.4e-08 Score=76.45 Aligned_cols=97 Identities=24% Similarity=0.327 Sum_probs=81.1
Q ss_pred cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957 3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 81 (201)
+++|+|+|.|.-+..++-..+. +++.+|.....+...+......+++|+++++..+++ .....+||+|++.++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv----- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV----- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh-----
Confidence 6999999999999999888776 999999999999999988888888899999999988 444689999998665
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.....+++-+.+.+++||.+++.-
T Consensus 125 --------------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 --------------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --------------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --------------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 355788899999999999988754
No 186
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.90 E-value=5.8e-09 Score=84.13 Aligned_cols=74 Identities=26% Similarity=0.442 Sum_probs=62.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
+.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++...+ .++++++++|+...+. ..+|+|+++..+
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlPY 111 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVPY 111 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCCc
Confidence 46899999999999999998865 89999999999999999987654 4689999999987654 468999986554
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.90 E-value=1.5e-08 Score=80.16 Aligned_cols=72 Identities=28% Similarity=0.429 Sum_probs=59.4
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCcee---EEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFD---VVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D---~v~~~~~l 77 (201)
+.+|||+|||+|.++..+++.+. .|+++|+++.+++.+++++.. .+++.++.+|+...+++ .+| +|+++..+
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP--DFPKQLKVVSNLPY 104 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh--HcCCcceEEEcCCh
Confidence 46899999999999999999876 799999999999999987654 35889999999887654 466 77765443
No 188
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.4e-08 Score=81.12 Aligned_cols=122 Identities=20% Similarity=0.320 Sum_probs=91.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC---eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT---AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~---~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~ 74 (201)
|.+|||++++.|+-|..+++...+ .|+++|.++..++.+++++...+..++..+..|....+ ....+||.|+..
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlD 236 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLD 236 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEEC
Confidence 578999999999999999988542 57999999999999999999999888888888877543 222359999942
Q ss_pred c---ccceeeecCCCCCCCCCccHHH----HHHHHHHHhhcccCCcEEEEEecCC
Q 028957 75 A---TMEVLFVNSGDPWNPQPETVTK----VMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 75 ~---~l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
. ....+--+++..|...+..... ..++|....++|||||.|+..+++.
T Consensus 237 aPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 237 APCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred CCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 1 1122223344445544443333 5688999999999999999988764
No 189
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=1.4e-08 Score=82.76 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=88.1
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
|.+|+|+.||-|.++..+|..+...|+++|+++.+++.+++|+..++..+ +..+++|+..+....+.+|-|+++..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p--- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP--- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC---
Confidence 67899999999999999999987679999999999999999999988655 88999999987655578999997532
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
....+++....+.+++||.+.+.++.+..
T Consensus 266 ----------------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 ----------------KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ----------------CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 23456788888888999998887766543
No 190
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.86 E-value=4.2e-09 Score=80.48 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=83.3
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC--CCceEEEEcccCCC--CCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG--YKEVKVLEADMLDL--PFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~--~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~ 76 (201)
|.+|||.+.|-|+.+++.+++|..+|+.++.++.+++.|.-|--..+ ...+.++.+|+.++ .+++.+||+|+-
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH--- 211 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH--- 211 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee---
Confidence 57899999999999999999998899999999999998876533222 23579999998864 478899999983
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
++|=+... ..--...+.++++++|+|||.++-..-+
T Consensus 212 --------DPPRfS~A-geLYseefY~El~RiLkrgGrlFHYvG~ 247 (287)
T COG2521 212 --------DPPRFSLA-GELYSEEFYRELYRILKRGGRLFHYVGN 247 (287)
T ss_pred --------CCCccchh-hhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence 22222111 1122578999999999999999865433
No 191
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.86 E-value=1.3e-08 Score=84.94 Aligned_cols=98 Identities=27% Similarity=0.324 Sum_probs=77.1
Q ss_pred CcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
.+|||++||+|.++..++.. +..+|+++|+++.+++.+++|++.+++.++.+.+.|+..+....+.||+|+..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD------ 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID------ 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC------
Confidence 47999999999999999775 43489999999999999999999888777889999987632113579999862
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
|. .....++....+.+++||.+++.
T Consensus 133 ------P~-------Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 133 ------PF-------GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------CC-------CCcHHHHHHHHHHhcCCCEEEEE
Confidence 21 11245777767778999999876
No 192
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.86 E-value=1.6e-08 Score=76.96 Aligned_cols=96 Identities=23% Similarity=0.337 Sum_probs=70.6
Q ss_pred CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|.+|+|+.||-|.++..+++.+ ...|+++|+++.+++.+++++..+++. ++..+.+|+..+.. .+.+|-|+++..
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp-- 178 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP-- 178 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T--
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh--
Confidence 5689999999999999999843 338999999999999999999988854 47899999988654 688999997532
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
.....++..+...+++||.+-
T Consensus 179 -----------------~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 -----------------ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -----------------SSGGGGHHHHHHHEEEEEEEE
T ss_pred -----------------HHHHHHHHHHHHHhcCCcEEE
Confidence 122457888889999988753
No 193
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.84 E-value=7e-08 Score=76.36 Aligned_cols=105 Identities=21% Similarity=0.316 Sum_probs=84.9
Q ss_pred CcEEEecCCCChhhHHHHhcCC---CeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCCC---CCCCceeEEEec
Q 028957 2 TSVLELGCGNSRLSEGLYNDGI---TAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLP---FSNDCFDVVIEK 74 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~---~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~---~~~~~~D~v~~~ 74 (201)
-+|||++||.|.....+....+ .++...|.++..++..++..+..++.++ +|.++|+++.. .-....++++.+
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVs 216 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVS 216 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEe
Confidence 4799999999999988877633 3999999999999999999999998777 99999998742 113356999988
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+.+..+ ...+.+...++.+.+.+.|||+++..
T Consensus 217 GL~ElF------------~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 217 GLYELF------------PDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred cchhhC------------CcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 877654 12244677899999999999999864
No 194
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.83 E-value=1.9e-08 Score=83.63 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=52.5
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 60 (201)
.+|||++||+|.++..+++... +|+++|.++.+++.++++...+++.+++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~-~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR-RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4799999999999998877644 999999999999999999988888789999999876
No 195
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.81 E-value=2.4e-08 Score=82.69 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=52.6
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 60 (201)
.+|||++||+|.++..+++... +|+++|.++++++.+++++..+++.+++++++|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~-~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR-RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 3699999999999998887754 999999999999999999998888789999999876
No 196
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.78 E-value=1.3e-08 Score=74.67 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=55.1
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCC--CCCCc-eeEEEe
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP--FSNDC-FDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~--~~~~~-~D~v~~ 73 (201)
..|+|+.||.|+.++.+|+... +|+++|+++..++.++.|..-.+ .++|.++++|+.++. ..... +|+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 4799999999999999999965 99999999999999999999888 468999999998742 22222 799986
No 197
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.77 E-value=9.5e-08 Score=75.79 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=76.3
Q ss_pred CcEEEecCCCCh----hhHHHHhcC-----CC-eEEEEECCHHHHHHHHHHHhh-----c----------------C---
Q 028957 2 TSVLELGCGNSR----LSEGLYNDG-----IT-AITCIDLSAVAVEKMQERLLL-----K----------------G--- 47 (201)
Q Consensus 2 ~~vLDlG~G~G~----~~~~l~~~~-----~~-~v~~vD~~~~~~~~~~~~~~~-----~----------------~--- 47 (201)
-+|+-.||+||. ++..+.+.+ .. +++|+|+|..+++.|+.-.=. . +
T Consensus 98 irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~ 177 (268)
T COG1352 98 IRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYR 177 (268)
T ss_pred eEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEE
Confidence 379999999995 333333333 23 999999999999988763100 0 0
Q ss_pred -----CCceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 48 -----YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 48 -----~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
...|.|...|+...+...+.||+|+|.+++-.+ +.+...++++.++..|+|||.|++-
T Consensus 178 v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-------------d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 178 VKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-------------DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-------------CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 124677888877655345789999999998655 4567889999999999999999864
No 198
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.76 E-value=4.4e-07 Score=69.47 Aligned_cols=140 Identities=17% Similarity=0.212 Sum_probs=98.8
Q ss_pred EEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCc-eeEEEecccccee
Q 028957 4 VLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDC-FDVVIEKATMEVL 80 (201)
Q Consensus 4 vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~-~D~v~~~~~l~~~ 80 (201)
|.|+||--|++...+++.+.. +++++|+++..++.|++++...+ ..++.+..+|.... ++.+. .|+|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGM---- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGM---- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecC----
Confidence 689999999999999999876 89999999999999999999887 55699999997652 33343 788885443
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeCCC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGKR 160 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (201)
+-..+.+++++....++....+++...+.......++...++....+.-...++..|.......+..
T Consensus 76 -------------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~ 142 (205)
T PF04816_consen 76 -------------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEE 142 (205)
T ss_dssp --------------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred -------------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCC
Confidence 2356788999888888777788887666665555666666666665555566666666666665444
Q ss_pred C
Q 028957 161 S 161 (201)
Q Consensus 161 ~ 161 (201)
.
T Consensus 143 ~ 143 (205)
T PF04816_consen 143 K 143 (205)
T ss_dssp -
T ss_pred C
Confidence 3
No 199
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.75 E-value=8.5e-08 Score=76.68 Aligned_cols=106 Identities=25% Similarity=0.372 Sum_probs=82.0
Q ss_pred CcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC-CCCCCceeEEEecc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSNDCFDVVIEKA 75 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~-~~~~~~~D~v~~~~ 75 (201)
++||-+|.|.|..+.++++... .+++.+|+++.+++.+++.+.... -++++++..|.... .-...+||+|++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D- 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD- 156 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc-
Confidence 5899999999999999999864 499999999999999999886554 37889999998763 2223489999963
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+.+| . .|...-.-..+++.+.+.|+++|.++..
T Consensus 157 --------~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 --------STDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred --------CCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 2233 1 1111122478999999999999999977
No 200
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.74 E-value=3.9e-08 Score=76.35 Aligned_cols=119 Identities=18% Similarity=0.406 Sum_probs=82.0
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceeee
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFV 82 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~ 82 (201)
.|-|+|||.+.++. .....|+..|+-+ .+-+++..|+.++|+++++.|++++...+ +
T Consensus 183 vIaD~GCGEakiA~----~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CLSL--M-- 239 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS----SERHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCLSL--M-- 239 (325)
T ss_pred EEEecccchhhhhh----ccccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeHhh--h--
Confidence 58899999988765 3234899999833 25578999999999999999999864333 2
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccccccccc--CCCCceEEEEEEeCCeeeEEEEEEE
Q 028957 83 NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFN--APQFTWSVEWITFGDGFHYFFYILR 156 (201)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (201)
-.++..++.++.|+|++||.+++.+.......-..+. .....|...-....+.+.++|.+.+
T Consensus 240 ------------gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 240 ------------GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred ------------cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 1467899999999999999999987655432222222 1234455555555555555544433
No 201
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.74 E-value=3.4e-08 Score=77.84 Aligned_cols=108 Identities=23% Similarity=0.353 Sum_probs=78.6
Q ss_pred CCcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC-CCCCC-ceeEEEe
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL-PFSND-CFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~-~~~~~-~~D~v~~ 73 (201)
+++||-+|.|.|..+.++++.. ..+++.+|+++.+++.+++.+.... -++++++.+|+... .-..+ +||+|+.
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV 156 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence 4789999999999999998875 3499999999999999999776432 25899999998753 22234 8999995
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
... +|..+.+. --...+++.+.+.|+|+|.+++..
T Consensus 157 D~~---------dp~~~~~~--l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 157 DLT---------DPDGPAPN--LFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp ESS---------STTSCGGG--GSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCC---------CCCCCccc--ccCHHHHHHHHhhcCCCcEEEEEc
Confidence 321 23222111 224789999999999999998765
No 202
>PRK04148 hypothetical protein; Provisional
Probab=98.74 E-value=2.5e-07 Score=65.67 Aligned_cols=95 Identities=15% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCcEEEecCCCCh-hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC-CCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSR-LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~-~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~ 78 (201)
+.+|+|+|||+|. ++..+++.|. +|+++|+++..++.++++ .++++..|+++-.+. -..+|+|.+.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysi---- 84 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSI---- 84 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEe----
Confidence 3679999999996 8888888887 999999999998888765 468899999875432 2568999873
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
+...++...+.++.+.+ |.-+++...+..
T Consensus 85 --------------rpp~el~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 85 --------------RPPRDLQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred --------------CCCHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 23356666666666654 345666655543
No 203
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.73 E-value=5.7e-08 Score=80.77 Aligned_cols=98 Identities=14% Similarity=0.275 Sum_probs=79.7
Q ss_pred CcEEEecCCCChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-CCCCceeEEEeccccc
Q 028957 2 TSVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-FSNDCFDVVIEKATME 78 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~~~~l~ 78 (201)
-+|||+.||+|..++.++.. +..+|+++|+++..++.+++|++.++..++.+++.|+..+- .....||+|..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl----- 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI----- 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe-----
Confidence 37999999999999999987 55699999999999999999999888777899999988642 22357999985
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
||+ .....++..+.+.++++|.+.+.
T Consensus 121 -------DPf-------Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 121 -------DPF-------GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -------CCC-------CCcHHHHHHHHHhcccCCEEEEE
Confidence 221 11246888889999999998876
No 204
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.68 E-value=1.1e-07 Score=77.32 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=58.7
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhc-CC-CceEEEE-cccCCCC----CCCCceeEEEe
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK-GY-KEVKVLE-ADMLDLP----FSNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~-~~-~~i~~~~-~d~~~~~----~~~~~~D~v~~ 73 (201)
.++||||||+|.+...++...+. +++|+|+++.+++.|++++..+ ++ .++.+.. .|...+. .+.+.||+|+|
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivc 195 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLC 195 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEe
Confidence 58999999999888888766444 9999999999999999999987 44 3576653 3332211 23568999999
Q ss_pred ccccce
Q 028957 74 KATMEV 79 (201)
Q Consensus 74 ~~~l~~ 79 (201)
+-.++.
T Consensus 196 NPPf~~ 201 (321)
T PRK11727 196 NPPFHA 201 (321)
T ss_pred CCCCcC
Confidence 866643
No 205
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.67 E-value=1.3e-07 Score=72.53 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=80.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+++++|+|+|.|.-+..++-..+. +|+.+|.....+...+......+++|++++++.++++......||+|++.++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 379999999999999998855555 8999999999999998888888898999999999886532111999998654
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 117 (201)
..+..+.+-+...+++||.+++
T Consensus 145 ----------------a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ----------------ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----------------cchHHHHHHHHHhcccCCcchh
Confidence 4556788888999999998754
No 206
>PRK00536 speE spermidine synthase; Provisional
Probab=98.67 E-value=2.8e-07 Score=72.94 Aligned_cols=95 Identities=19% Similarity=0.288 Sum_probs=72.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDLPFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 76 (201)
+++||=+|.|.|..++++++... +|+.+|+++++++.+++.++... -++++++.. +. ....++||+|+....
T Consensus 73 pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICLQE 148 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEcCC
Confidence 57999999999999999999864 99999999999999999655432 356666642 11 122368999996432
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+ ...+.+.+++.|+|||.++...
T Consensus 149 ~--------------------~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 149 P--------------------DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C--------------------ChHHHHHHHHhcCCCcEEEECC
Confidence 1 1467789999999999988654
No 207
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.67 E-value=3.5e-08 Score=73.17 Aligned_cols=99 Identities=22% Similarity=0.299 Sum_probs=80.3
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 81 (201)
+.+.|+|+|+|-++...+.. ..+|++++.++.....+.+|+.-.+..+++++.+|+.+..+ ...|+|+|-+ ++..+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm-lDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM-LDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH-hhHHh
Confidence 46789999999999877766 44999999999999999999887788899999999998877 4579999843 33332
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
. .+....++..+.+.|+.+++++
T Consensus 110 i------------~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 I------------EEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred h------------cccccHHHHHHHHHhhcCCccc
Confidence 1 2445678888888999998877
No 208
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.9e-07 Score=79.06 Aligned_cols=71 Identities=25% Similarity=0.306 Sum_probs=62.7
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC---CCceeEEEe
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v~~ 73 (201)
+++||+=||.|.++..+++... +|+|+|+++++++.|+++.+.++..|+.|..+++..+... ...+|+|+.
T Consensus 295 ~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 295 ERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred CEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 6899999999999999997765 9999999999999999999999988999999999875422 347899985
No 209
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.5e-07 Score=73.94 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=62.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCC-ceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSND-CFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~D~v~~~~~l 77 (201)
+++|||+|+|.|.+|..+++.+. .|+++|+++.+++..++.+.. ..+++++.+|+...+++.- .++.|++|-.+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence 46899999999999999999988 899999999999999998763 3589999999998876542 57888876443
No 210
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.62 E-value=6e-07 Score=80.70 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=80.0
Q ss_pred CCcEEEecCCCChhhHHHHhcC-------------------------------------------CCeEEEEECCHHHHH
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG-------------------------------------------ITAITCIDLSAVAVE 37 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~-------------------------------------------~~~v~~vD~~~~~~~ 37 (201)
+..++|.+||+|++.++.+... ..+++|+|+++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 3579999999999999987521 016999999999999
Q ss_pred HHHHHHhhcCCC-ceEEEEcccCCCCCC--CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcc---cC
Q 028957 38 KMQERLLLKGYK-EVKVLEADMLDLPFS--NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL---KP 111 (201)
Q Consensus 38 ~~~~~~~~~~~~-~i~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---~~ 111 (201)
.|++|+...++. .+.+.++|+.+++.+ .+++|+|+++ +||...-....+...+.+.+.+.+ .+
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN-----------PPYg~r~~~~~~l~~lY~~lg~~lk~~~~ 339 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN-----------PPYGERLGEEPALIALYSQLGRRLKQQFG 339 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC-----------CCCcCccCchHHHHHHHHHHHHHHHHhCC
Confidence 999999988864 488999999887543 3579999986 444432223344455555544444 38
Q ss_pred CcEEEEEecCC
Q 028957 112 DGLFISVSFGQ 122 (201)
Q Consensus 112 gG~l~~~~~~~ 122 (201)
|+.+++.+...
T Consensus 340 g~~~~llt~~~ 350 (702)
T PRK11783 340 GWNAALFSSSP 350 (702)
T ss_pred CCeEEEEeCCH
Confidence 88888776543
No 211
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.60 E-value=2.2e-07 Score=72.66 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=62.0
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 76 (201)
++.|||+|.|||.++..+++.+. +|+++|+++.|+...+++..... ....+++.+|....++ ..||.++++..
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--P~fd~cVsNlP 132 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--PRFDGCVSNLP 132 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--cccceeeccCC
Confidence 46899999999999999999987 99999999999999999876554 3468999999987654 46899997543
No 212
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.60 E-value=2.5e-07 Score=72.89 Aligned_cols=109 Identities=21% Similarity=0.284 Sum_probs=76.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC----------------------------Cce-
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY----------------------------KEV- 51 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~----------------------------~~i- 51 (201)
|.++||+|||+-..-...+...++++++.|..+...+..+++++..+. ..|
T Consensus 57 g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk 136 (256)
T PF01234_consen 57 GETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVK 136 (256)
T ss_dssp EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEE
T ss_pred CCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhc
Confidence 458999999996554444444556999999999999988887654311 113
Q ss_pred EEEEcccCCCC-CCC-----CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 52 KVLEADMLDLP-FSN-----DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 52 ~~~~~d~~~~~-~~~-----~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+++..|+.+.+ +.. .+||+|++.+++.... ...+...++++++.++|||||.|++...
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~-----------~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC-----------KDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH------------SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc-----------CCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 37788988643 222 3599999999998773 3457789999999999999999998764
No 213
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.58 E-value=4.6e-08 Score=73.51 Aligned_cols=109 Identities=24% Similarity=0.396 Sum_probs=65.9
Q ss_pred CcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------C--CCCcee
Q 028957 2 TSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------F--SNDCFD 69 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~--~~~~~D 69 (201)
.+|||+||++|+++..+++.+ ..+|+++|+.+. ...+++..+++|..+.. + ....+|
T Consensus 25 ~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~d 93 (181)
T PF01728_consen 25 FTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFD 93 (181)
T ss_dssp EEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSES
T ss_pred cEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccCcc
Confidence 689999999999999999997 239999999765 11235566666654311 1 126899
Q ss_pred EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccc
Q 028957 70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 125 (201)
Q Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 125 (201)
+|++....... +.+..+.....+.....+.-+.+.|+|||.+++..+..+..
T Consensus 94 lv~~D~~~~~~----g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 94 LVLSDMAPNVS----GDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp EEEE-----------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred eeccccccCCC----CchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 99987644322 11111111122234455556667899999999887775554
No 214
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.55 E-value=1.3e-06 Score=66.98 Aligned_cols=100 Identities=19% Similarity=0.202 Sum_probs=80.2
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC------CCCCCceeEE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL------PFSNDCFDVV 71 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~------~~~~~~~D~v 71 (201)
++++||+|.=||+-+..+|..-+. +|+++|++++..+.+.+..+..+. ..|+++++++... ....++||.+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 478999999999999888887544 999999999999999888777763 4689999987642 1346789999
Q ss_pred EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+. ++ .+.......+++.+++++||.+++-
T Consensus 154 Fv----Da--------------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 154 FV----DA--------------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EE----cc--------------chHHHHHHHHHHHhhcccccEEEEe
Confidence 84 22 2456679999999999999998863
No 215
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=3.8e-07 Score=68.15 Aligned_cols=104 Identities=16% Similarity=0.244 Sum_probs=77.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
|++|||+|+|+|..++..+..|...|++.|+++.....+.-|.+.+++ .+.+...|... ++..+|+++...++.
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g---~~~~~Dl~LagDlfy-- 153 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG---SPPAFDLLLAGDLFY-- 153 (218)
T ss_pred cceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC---CCcceeEEEeeceec--
Confidence 689999999999999999999988999999999988888888887774 67888777654 467899999765442
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE-EEEEecCCcc
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL-FISVSFGQPH 124 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~-l~~~~~~~~~ 124 (201)
+.....+++. ....++..|. +++-++.++.
T Consensus 154 -------------~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 -------------NHTEADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred -------------CchHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 2355566777 5555555555 5544544443
No 216
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.54 E-value=1.4e-06 Score=71.06 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=74.8
Q ss_pred CcEEEecCCCChhhHHHHhc----C-CCeEEEEECCHHHHHHHHHHHhhcCCCceEE--EEcccCCC----CC--CCCce
Q 028957 2 TSVLELGCGNSRLSEGLYND----G-ITAITCIDLSAVAVEKMQERLLLKGYKEVKV--LEADMLDL----PF--SNDCF 68 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~----~-~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~~~----~~--~~~~~ 68 (201)
..++|+|||+|.-+..++.. + ...++++|+|.+.++.+.+++.....+.+.+ +++|..+. +- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 47999999999987776654 2 2289999999999999999987444556655 88887652 11 12335
Q ss_pred eEEEecc-ccceeeecCCCCCCCCCccHHHHHHHHHHHhh-cccCCcEEEEE
Q 028957 69 DVVIEKA-TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHR-VLKPDGLFISV 118 (201)
Q Consensus 69 D~v~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~gG~l~~~ 118 (201)
.+++..+ ++..+ ...+...+|+++.+ .|+|||.+++-
T Consensus 158 r~~~flGSsiGNf-------------~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 158 TTILWLGSSIGNF-------------SRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cEEEEeCccccCC-------------CHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 6666532 33322 34678899999999 99999998873
No 217
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.54 E-value=5.4e-07 Score=72.17 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=70.2
Q ss_pred CCcEEEecCCCChhhHHHHhcC--CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDG--ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+.+|||+|||+|..+..+.... ..+++++|.|+.+++.++..+.............+......+....|+|+++++|.
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L~ 113 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVLN 113 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhhh
Confidence 4689999999998776655542 23999999999999999887654321111101111111011122349999999887
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
.+ .. ....++++++.+.+++ .+++++...+
T Consensus 114 EL------------~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 114 EL------------PS-AARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred cC------------Cc-hHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 76 23 5667888888877765 7777776544
No 218
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.54 E-value=1.3e-07 Score=75.95 Aligned_cols=121 Identities=23% Similarity=0.306 Sum_probs=85.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~ 76 (201)
|.+|||++++.|+-+..++.... ..+++.|+++..+...++++...+..++.....|..... .....||.|+....
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaP 165 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAP 165 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECS
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCC
Confidence 46899999999999999988744 399999999999999999999999888998888877642 22346999995211
Q ss_pred ---cceeeecCCCCCCCCCccHHH----HHHHHHHHhhcc----cCCcEEEEEecC
Q 028957 77 ---MEVLFVNSGDPWNPQPETVTK----VMAMLEGVHRVL----KPDGLFISVSFG 121 (201)
Q Consensus 77 ---l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~L----~~gG~l~~~~~~ 121 (201)
...+--+.+..|...++.... ..++|++..+.+ +|||+++..+++
T Consensus 166 CSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 166 CSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred ccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 111111111112112222222 468899999999 999999988775
No 219
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.52 E-value=1.6e-06 Score=71.45 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=81.6
Q ss_pred CcEEEecCCCChhhHHHHhcCCC----------------------------------------eEEEEECCHHHHHHHHH
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT----------------------------------------AITCIDLSAVAVEKMQE 41 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~----------------------------------------~v~~vD~~~~~~~~~~~ 41 (201)
..++|--||+|++.++.|..+.+ .++|+|+++.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 46899999999999999877531 27799999999999999
Q ss_pred HHhhcCC-CceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHH----HHHHHHHHHhhcccCCcEEE
Q 028957 42 RLLLKGY-KEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVT----KVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 42 ~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~ 116 (201)
|....++ +.|.|.++|+..+..+...+|+||||- ||-....... -+..+.+.+++.++.-+..+
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP-----------PYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP-----------PYGERLGSEALVAKLYREFGRTLKRLLAGWSRYV 341 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC-----------CcchhcCChhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 9998884 458999999998865447899999874 4432222222 34566667777777777777
Q ss_pred EEec
Q 028957 117 SVSF 120 (201)
Q Consensus 117 ~~~~ 120 (201)
+++.
T Consensus 342 ~tt~ 345 (381)
T COG0116 342 FTTS 345 (381)
T ss_pred EEcc
Confidence 6654
No 220
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.51 E-value=9.5e-07 Score=71.95 Aligned_cols=118 Identities=24% Similarity=0.352 Sum_probs=73.5
Q ss_pred CcEEEecCCCChhhHHHHhc--------CCCeEEEEECCHHHHHHHHHHHhhcC--CCceEEEEcccCCCCC-C-CCcee
Q 028957 2 TSVLELGCGNSRLSEGLYND--------GITAITCIDLSAVAVEKMQERLLLKG--YKEVKVLEADMLDLPF-S-NDCFD 69 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~--------~~~~v~~vD~~~~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~-~-~~~~D 69 (201)
.+|+|.+||+|.+...+... ....++|+|+++.++..++-++.-.+ ..+..+..+|....+. . ...||
T Consensus 48 ~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D 127 (311)
T PF02384_consen 48 DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFD 127 (311)
T ss_dssp EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EE
T ss_pred ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 57999999999999888763 22399999999999999988775554 2334688888765432 2 47899
Q ss_pred EEEecccccee-eecCC---CC-CCC--CCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 70 VVIEKATMEVL-FVNSG---DP-WNP--QPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 70 ~v~~~~~l~~~-~~~~~---~~-~~~--~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+|+++-.+... +.+.. ++ |.. .+.. ..--.++..+.+.|+++|++.++.+
T Consensus 128 ~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 128 VIIGNPPFGSKEWKDEELEKDERFKKYFPPKS-NAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEEE--CTCES-STGGGCTTCCCTTCSSSTT-EHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCCccccccccccccccccccccCCCcc-chhhhhHHHHHhhcccccceeEEec
Confidence 99997555433 10000 00 110 0111 1223588999999999999776654
No 221
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.49 E-value=5.7e-08 Score=81.95 Aligned_cols=99 Identities=27% Similarity=0.485 Sum_probs=66.3
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEE---ECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCI---DLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~v---D~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
.++||+|||.|+++..++.++. ....+ |..+..++.|.++ |++-+--+ .--..+|++++.||+|-|+.++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~-~~s~rLPfp~~~fDmvHcsrc~- 191 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER----GVPAMIGV-LGSQRLPFPSNAFDMVHCSRCL- 191 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc----Ccchhhhh-hccccccCCccchhhhhccccc-
Confidence 3689999999999999998865 22222 3334445555433 22221111 1124689999999999998776
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.||.... .-+|-++.|+|+|||++++...
T Consensus 192 -------i~W~~~~------g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 192 -------IPWHPND------GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred -------ccchhcc------cceeehhhhhhccCceEEecCC
Confidence 3564321 3588899999999999987654
No 222
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.46 E-value=1.4e-06 Score=75.92 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=52.2
Q ss_pred CcEEEecCCCChhhHHHHhcC--------C-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----CCCCCc
Q 028957 2 TSVLELGCGNSRLSEGLYNDG--------I-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDC 67 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~--------~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~ 67 (201)
.+|||.|||+|.++..++... . ..++++|+++..+..++.++...+...+.+...|.... .-..+.
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~ 112 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLDL 112 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccCc
Confidence 489999999999999887642 1 27999999999999999887665422344555543221 111257
Q ss_pred eeEEEec
Q 028957 68 FDVVIEK 74 (201)
Q Consensus 68 ~D~v~~~ 74 (201)
||+|++|
T Consensus 113 fD~IIgN 119 (524)
T TIGR02987 113 FDIVITN 119 (524)
T ss_pred ccEEEeC
Confidence 9999986
No 223
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=1.6e-07 Score=74.02 Aligned_cols=99 Identities=27% Similarity=0.387 Sum_probs=79.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
|..++|+|||.|..+..- ....++++|++...+..+++. +. ....+|+..++++..+||.+++..++|+
T Consensus 46 gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred cceeeecccCCcccCcCC---CcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 456899999999776321 112799999998888777643 33 6788999999999999999999999999
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+ .......++++++.+.|+|||...+..+.
T Consensus 116 l------------sT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 116 L------------STRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred h------------hhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 8 36677889999999999999997765543
No 224
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.8e-06 Score=65.55 Aligned_cols=111 Identities=23% Similarity=0.258 Sum_probs=75.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDV 70 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~ 70 (201)
|..|+||||.+|++++.+++.... .|+++|+.+- ...+++.++++|.+.-+ +....+|+
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence 578999999999999999887432 6999999652 22457899999987643 34455799
Q ss_pred EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccc
Q 028957 71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFR 126 (201)
Q Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 126 (201)
|++.+.-... +.+-.+.+........+++-...+|+|||.+++-.+......
T Consensus 115 V~sD~ap~~~----g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~ 166 (205)
T COG0293 115 VLSDMAPNTS----GNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFE 166 (205)
T ss_pred EEecCCCCcC----CCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHH
Confidence 9975433111 111112223333456677778889999999999887665443
No 225
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.38 E-value=1.2e-06 Score=72.51 Aligned_cols=58 Identities=28% Similarity=0.406 Sum_probs=47.6
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 60 (201)
.+|||+-||.|.++..++.... +|+|+|.++.+++.|++++..+++.|++++.+++.+
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 3699999999999999988866 999999999999999999999999999999887654
No 226
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.38 E-value=3.9e-06 Score=66.62 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=73.6
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh---c--------------------------------
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL---K-------------------------------- 46 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~---~-------------------------------- 46 (201)
.+||--|||-|+++.+++..|+ .+.|.|.|--|+-...-.+.. .
T Consensus 58 ~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p 136 (270)
T PF07942_consen 58 IRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP 136 (270)
T ss_pred cEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence 5799999999999999999999 999999999886554432221 0
Q ss_pred -----CCCceEEEEcccCCCCCCC---CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 47 -----GYKEVKVLEADMLDLPFSN---DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 47 -----~~~~i~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
...++....+|...+-.+. ++||+|++.+.++. .+++...++.|.++|||||..+=.
T Consensus 137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---------------A~Ni~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---------------AENIIEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---------------hHHHHHHHHHHHHHhccCCEEEec
Confidence 0013445555555443333 68999998665543 377889999999999999976643
No 227
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=5.6e-06 Score=64.96 Aligned_cols=94 Identities=24% Similarity=0.348 Sum_probs=71.6
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCCCC--CCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLPFS--NDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~--~~~~D~v~~~~ 75 (201)
|.+|||-|.|+|.++..+++. ++. +++..|+.....+.+.+.++..++ +++.+...|+....+. ...+|.|+
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF--- 182 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF--- 182 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE---
Confidence 679999999999999999988 444 999999999999999999988874 5689999998775443 34455555
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 114 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 114 (201)
.|-+.||. ++..+..+||.+|.
T Consensus 183 ------LDlPaPw~-----------AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 183 ------LDLPAPWE-----------AIPHAAKILKDEGG 204 (314)
T ss_pred ------EcCCChhh-----------hhhhhHHHhhhcCc
Confidence 55667773 34445557776664
No 228
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.33 E-value=1.5e-05 Score=56.71 Aligned_cols=103 Identities=32% Similarity=0.469 Sum_probs=70.4
Q ss_pred EEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC--CCCCC-CceeEEEeccccc
Q 028957 4 VLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD--LPFSN-DCFDVVIEKATME 78 (201)
Q Consensus 4 vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~~D~v~~~~~l~ 78 (201)
++|+|||+|..+ .+..... ..++++|+++.++..+...........+.+...|... .++.. ..||++......+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 899999999966 3333322 2788899999999885554432111116788888775 56655 4899994333222
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
.. . ....+.++.+.++|+|.+++......
T Consensus 131 ~~---------------~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LL---------------P-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cC---------------C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 21 1 67899999999999999988776544
No 229
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.31 E-value=1.9e-06 Score=64.83 Aligned_cols=111 Identities=17% Similarity=0.312 Sum_probs=80.5
Q ss_pred cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-------CCceEEEEcccCCCCCCCCceeEEEec
Q 028957 3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-------YKEVKVLEADMLDLPFSNDCFDVVIEK 74 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~~~~~~~~D~v~~~ 74 (201)
.+.|||||-|.++..++...+. .++|.++.-.+.++.++++.... ++|+.+...++...- .+-|..
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~k---- 136 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEK---- 136 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhh----
Confidence 4689999999999999998877 99999999888888888876553 566777777665421 222222
Q ss_pred cccceeeecCCCCCCCCCccHHH--HHHHHHHHhhcccCCcEEEEEe
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTK--VMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+-+..+|+-+++|+++...+... ...++++..-+|++||.++.++
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22444555567887765544443 3578899999999999988764
No 230
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.30 E-value=1.9e-06 Score=69.44 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=58.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--CCC--CceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--FSN--DCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~--~~~D~v~~~ 74 (201)
|..+||++||.|+.+..+++... .+|+|+|.++++++.+++++.. .+++.++++|..++. .+. .++|.|++.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 45899999999999999998853 3999999999999999998765 358999999987643 212 278988853
No 231
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.24 E-value=7.6e-06 Score=65.17 Aligned_cols=73 Identities=21% Similarity=0.377 Sum_probs=58.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCC---CceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSN---DCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D~v~~~~~ 76 (201)
++.|||+|+|+|.+|..+++.+ .+++++|.++...+..++.+... ++++++.+|+.+..... .....|+++-.
T Consensus 31 ~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~--~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 31 GDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN--PNVEVINGDFLKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp TSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC--SSEEEEES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred CCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc--ccceeeecchhccccHHhhcCCceEEEEEec
Confidence 4689999999999999999998 59999999999999999877633 58999999998876433 34456666543
No 232
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.24 E-value=1.5e-07 Score=70.85 Aligned_cols=92 Identities=20% Similarity=0.359 Sum_probs=68.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE-cccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.++||+|+|.|.++..++.... +|+++++|..|....+.+ +.+++. .+..+ .+-++|+|.|-+.++.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe-evyATElS~tMr~rL~kk-------~ynVl~~~ew~~---t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE-EVYATELSWTMRDRLKKK-------NYNVLTEIEWLQ---TDVKLDLILCLNLLDR 181 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH-HHHHHHhhHHHHHHHhhc-------CCceeeehhhhh---cCceeehHHHHHHHHh
Confidence 36899999999999998877644 899999999888877653 222222 12222 2357999999888876
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccC-CcEEEEE
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP-DGLFISV 118 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~ 118 (201)
+ -+.-++++.++.+|+| +|++++.
T Consensus 182 c---------------~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 182 C---------------FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred h---------------cChHHHHHHHHHHhccCCCcEEEE
Confidence 6 2456899999999998 8987753
No 233
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.23 E-value=6e-06 Score=59.34 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=51.0
Q ss_pred cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957 3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 60 (201)
++||+|||.|.++..++..++. +++++|+++.+.+.+++++..++.+++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 5899999999999999988775 899999999999999999988776678888877654
No 234
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.23 E-value=3.8e-06 Score=64.34 Aligned_cols=101 Identities=24% Similarity=0.225 Sum_probs=60.0
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHH-------hhcC--CCceEEEEcccCCCCCC---CCc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERL-------LLKG--YKEVKVLEADMLDLPFS---NDC 67 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~-------~~~~--~~~i~~~~~d~~~~~~~---~~~ 67 (201)
++..+|||||.|.....++.. +..+++|||+.+...+.++... +..+ ..++.+..+|+.+.+.. -..
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~ 122 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSD 122 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcC
Confidence 357899999999998777654 6657999999999887776533 2222 34577788887653211 134
Q ss_pred eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957 68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117 (201)
Q Consensus 68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 117 (201)
.|+|++++.. | .+++...+.+....||+|.+++.
T Consensus 123 AdvVf~Nn~~---F-------------~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 123 ADVVFVNNTC---F-------------DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -SEEEE--TT---T--------------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CCEEEEeccc---c-------------CHHHHHHHHHHHhcCCCCCEEEE
Confidence 6999987543 1 14555666777788999888764
No 235
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.20 E-value=1.8e-06 Score=65.72 Aligned_cols=97 Identities=21% Similarity=0.316 Sum_probs=71.1
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCC----CCCCCceeEEEeccc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDL----PFSNDCFDVVIEKAT 76 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~----~~~~~~~D~v~~~~~ 76 (201)
..|+|..||.|+.++..+..++ .|+++|+++.-+..|+.|++-.|+ ++|.|+++|+.++ .+....+|+|+.
T Consensus 96 ~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~--- 171 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL--- 171 (263)
T ss_pred chhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec---
Confidence 4688999999999999999988 899999999999999999988884 4699999998763 344445667664
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 114 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 114 (201)
.+||-- ..-...-+-.+...+.|.|.
T Consensus 172 --------sppwgg----p~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 172 --------SPPWGG----PSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred --------CCCCCC----cchhhhhhhhhhhhcchhHH
Confidence 256642 23334444445555555544
No 236
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.15 E-value=3e-05 Score=64.33 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=85.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~ 75 (201)
|.||||++|.+|+-+..+|.... ..+++.|.+...++..+.++...+..+..+...|...++ ++. +||-|+...
T Consensus 242 gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLDA 320 (460)
T KOG1122|consen 242 GERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLDA 320 (460)
T ss_pred CCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeeecC
Confidence 57999999999998888877632 289999999999999999999999888888888887654 443 899998322
Q ss_pred ccce---eeecCCCCCCCCCc----cHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 76 TMEV---LFVNSGDPWNPQPE----TVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 76 ~l~~---~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
.-.. +.-+..--|.+... ...-.++++....+++++||+++..+++.
T Consensus 321 PCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 321 PCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred CCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 1111 11111111221111 11125688889999999999999888764
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.15 E-value=1.3e-05 Score=65.30 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=51.6
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 76 (201)
|+++||+||++|+++..++++|. .|++||..+ +- ..+.. -++|.....|......+.+.+|.++|..+
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~--~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMD--TGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhC--CCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 57899999999999999999988 999999544 21 22222 25889999988765433578999998543
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.5e-05 Score=61.48 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=68.4
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCCC---CCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLP---FSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~---~~~~~~D~v~~~~~ 76 (201)
|+.+||+|+-||+++..++++|..+|+++|.....+..--++ . +++ .+...|+..+. +. +..|++++.-+
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d--~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvS 153 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---D--PRVIVLERTNVRYLTPEDFT-EKPDLIVIDVS 153 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---C--CcEEEEecCChhhCCHHHcc-cCCCeEEEEee
Confidence 578999999999999999999999999999977655433222 1 243 33445555432 32 36788887544
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
| -.+..++..+..+++++|.++...
T Consensus 154 F------------------ISL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 154 F------------------ISLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred h------------------hhHHHHHHHHHHhcCCCceEEEEe
Confidence 4 346789999999999999977653
No 239
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.10 E-value=4.7e-05 Score=62.30 Aligned_cols=109 Identities=26% Similarity=0.279 Sum_probs=78.0
Q ss_pred CcEEEecCCCChhhHHHHhcC-CCeEEEEECCHHHHHHHHHHH--hhcC-----CCceEEEEcccCCC-CCCCCceeEEE
Q 028957 2 TSVLELGCGNSRLSEGLYNDG-ITAITCIDLSAVAVEKMQERL--LLKG-----YKEVKVLEADMLDL-PFSNDCFDVVI 72 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~~~~~~--~~~~-----~~~i~~~~~d~~~~-~~~~~~~D~v~ 72 (201)
.+||-+|.|.|.-..++.+.. ..+++.+|++|+|++.++++. ...+ -++++++..|+.+. .-..+.||+||
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 479999999999999998874 559999999999999998543 2211 36789999998873 23345899988
Q ss_pred eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
. |.++|-++.. ..--...+...+.+.|+++|.+++..-
T Consensus 371 V---------Dl~DP~tps~-~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 371 V---------DLPDPSTPSI-GRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred E---------eCCCCCCcch-hhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 4 2234432211 001135778888999999999987643
No 240
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.09 E-value=5.6e-06 Score=68.55 Aligned_cols=105 Identities=23% Similarity=0.266 Sum_probs=82.8
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
..++|+|||-|.....++......+++++.++..+..+........+. +..++..|....+++++.||.+.+..+..
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~-- 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC-- 189 (364)
T ss_pred ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc--
Confidence 357899999999999998876569999999988877776655444332 23457788888889999999999855443
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+.+....++++++++++|||.++..++.
T Consensus 190 -------------~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 190 -------------HAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred -------------cCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 3467789999999999999999976553
No 241
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=2.2e-06 Score=62.19 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=76.5
Q ss_pred CCcEEEecCCC-ChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC---CCceEEEEcccCCC--CCCCCceeEEEe
Q 028957 1 MTSVLELGCGN-SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADMLDL--PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~--~~~~~~~D~v~~ 73 (201)
|.+|||+|.|- |.-+.++|...+. .|..+|-+++.++..++....+. ..++..+..+.... ......||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 46799999996 4445555544333 99999999999988887654442 23333444333321 233468999999
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccccccccc
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFN 131 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~ 131 (201)
.+++|++ +....+++.+...|+|.|.-++..+-+..-.+.++.
T Consensus 110 ---ADClFfd------------E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~d 152 (201)
T KOG3201|consen 110 ---ADCLFFD------------EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLD 152 (201)
T ss_pred ---ccchhHH------------HHHHHHHHHHHHHhCcccceeEecCcccchHHHHHH
Confidence 4555544 566788899999999999977666555444444433
No 242
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.08 E-value=8.1e-05 Score=57.14 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=72.2
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEecc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~ 75 (201)
|.+||-||+.+|+....++.- +.. .|++++.++...+......+.. +|+-.+-.|+..-. .--+..|+|++.-
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV 151 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIFQDV 151 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEEecC
Confidence 579999999999999988876 433 8999999998877776554443 58998999998621 1234789988631
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
. .....+-++.++...||+||.+++..
T Consensus 152 a-----------------Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 152 A-----------------QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp S-----------------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-----------------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 1 22456678888889999999988753
No 243
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.05 E-value=0.00014 Score=56.57 Aligned_cols=104 Identities=22% Similarity=0.205 Sum_probs=63.7
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCC-CCCceeEEEecccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPF-SNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~~D~v~~~~~l 77 (201)
|++||-+|=..- .++.++.. .+.+|+.+|+++..++..++..+..+++ ++.+..|+.. +|. -.++||++++
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~T---- 118 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFT---- 118 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE----
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEe----
Confidence 578888885543 33333333 4459999999999999999999888875 9999999886 331 1478999997
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
++| ...+...-++++....||..|...+..++.
T Consensus 119 -------DPP-----yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 119 -------DPP-----YTPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp ---------------SSHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred -------CCC-----CCHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 344 467889999999999998777444444443
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.05 E-value=0.0002 Score=54.75 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=98.9
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
.++.|+||--+++...+.+.+.. .+++.|+++..++.|.+++...+ .+++++..+|....--.+..+|+++..++
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM--- 94 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM--- 94 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC---
Confidence 46899999999999999988765 99999999999999999998877 56788888887542223347898886443
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccccCCCCceEEEEEEeCCeeeEEEEEEEeCC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFFNAPQFTWSVEWITFGDGFHYFFYILRKGK 159 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (201)
+-..+..++++-.+.|+.=-++++.-...+.....++....+....+.-...++..|-..+..++.
T Consensus 95 --------------GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~~ 160 (226)
T COG2384 95 --------------GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETILEEDGKIYEILVVEKSS 160 (226)
T ss_pred --------------cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeeeecccCeEEEEEEEecCC
Confidence 224567888888888864445665543444334444555555544555555666666666666654
No 245
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.04 E-value=6.1e-05 Score=60.06 Aligned_cols=104 Identities=22% Similarity=0.304 Sum_probs=64.8
Q ss_pred CcEEEecCCCChhhHHHH-hc-CCC-eEEEEECCHHHHHHHHHHHh-hcC-CCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957 2 TSVLELGCGNSRLSEGLY-ND-GIT-AITCIDLSAVAVEKMQERLL-LKG-YKEVKVLEADMLDLPFSNDCFDVVIEKAT 76 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~-~~-~~~-~v~~vD~~~~~~~~~~~~~~-~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 76 (201)
++|+=+|||+=-+|..+. +. +.. .|+++|+++++.+.+++... ..+ -.++.++++|+.........||+|+....
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 589999999865555444 33 433 89999999999999988766 222 34789999999876544568999996544
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
... ..+...+++.++.+.++||+.+++..
T Consensus 202 Vg~--------------~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 202 VGM--------------DAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -S------------------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred ccc--------------ccchHHHHHHHHHhhCCCCcEEEEec
Confidence 321 23467899999999999999988874
No 246
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.03 E-value=4.7e-05 Score=57.97 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=79.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC--CCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL--PFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~ 78 (201)
|.+||++|=|-|.....+..+.+.+-+.++..+++++.+++.-... ..++.+..+-+++. .++++.||-|+-....
T Consensus 102 ggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~d~~FDGI~yDTy~- 179 (271)
T KOG1709|consen 102 GGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLPDKHFDGIYYDTYS- 179 (271)
T ss_pred CceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccccccCcceeEeechh-
Confidence 6799999999999888887777768889999999999998764433 24777777777653 3678889998842211
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+..++...+.+.+.++|||+|.+-+.
T Consensus 180 --------------e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 180 --------------ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred --------------hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 34588899999999999999998764
No 247
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.00 E-value=7.3e-05 Score=53.88 Aligned_cols=75 Identities=25% Similarity=0.351 Sum_probs=55.3
Q ss_pred CcEEEecCCCChhhHHHHh-----cCCCeEEEEECCHHHHHHHHHHHhhcC--C-CceEEEEcccCCCCCCCCceeEEEe
Q 028957 2 TSVLELGCGNSRLSEGLYN-----DGITAITCIDLSAVAVEKMQERLLLKG--Y-KEVKVLEADMLDLPFSNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~-----~~~~~v~~vD~~~~~~~~~~~~~~~~~--~-~~i~~~~~d~~~~~~~~~~~D~v~~ 73 (201)
.+|+|+|||.|+++..++. ....+|+++|.++..++.+.++....+ . .++.+..++...... ....++++.
T Consensus 27 ~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vg 105 (141)
T PF13679_consen 27 ITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDILVG 105 (141)
T ss_pred CEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeEEEE
Confidence 5799999999999999988 422299999999999999988876655 2 345566655543221 455678886
Q ss_pred cccccee
Q 028957 74 KATMEVL 80 (201)
Q Consensus 74 ~~~l~~~ 80 (201)
+|..
T Consensus 106 ---LHaC 109 (141)
T PF13679_consen 106 ---LHAC 109 (141)
T ss_pred ---eecc
Confidence 7766
No 248
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=2e-05 Score=64.03 Aligned_cols=111 Identities=18% Similarity=0.233 Sum_probs=69.0
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceE----EEEcccCCCCCCCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVK----VLEADMLDLPFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~----~~~~d~~~~~~~~~~~D~v~~~ 74 (201)
+.+|||+|.|+|.....+-...+. .++.++.++..-+............... -++.|-..++. ...|++++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i-- 190 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAI-- 190 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhh--
Confidence 468999999999887766555554 7888888887665555443322211111 22223222221 23455554
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
++|.+..+ .....+...++.+..++.|||.+++++...|.
T Consensus 191 -~~~eLl~d---------~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 191 -VLDELLPD---------GNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred -hhhhhccc---------cCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 46665433 23344566899999999999999999877664
No 249
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.89 E-value=0.00015 Score=51.86 Aligned_cols=92 Identities=23% Similarity=0.312 Sum_probs=60.2
Q ss_pred eEEEEECCHHHHHHHHHHHhhcCC-CceEEEEcccCCCC--CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHH
Q 028957 25 AITCIDLSAVAVEKMQERLLLKGY-KEVKVLEADMLDLP--FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAM 101 (201)
Q Consensus 25 ~v~~vD~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (201)
+|++.|+.+++++.+++++...+. .++.++..+-..+. .+.+++|+++.|.. ++ ..+++=.. ...+....+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YL--PggDk~i~--T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YL--PGGDKSIT--TKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B---CTS-TTSB----HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cC--CCCCCCCC--cCcHHHHHH
Confidence 589999999999999999998874 46999988877654 33358999996632 23 22332111 122345688
Q ss_pred HHHHhhcccCCcEEEEEecCC
Q 028957 102 LEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 102 l~~~~~~L~~gG~l~~~~~~~ 122 (201)
++.+.+.|+|||.+.++.+..
T Consensus 75 l~~al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--S
T ss_pred HHHHHHhhccCCEEEEEEeCC
Confidence 999999999999999887653
No 250
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=1.2e-05 Score=68.13 Aligned_cols=58 Identities=17% Similarity=0.337 Sum_probs=52.6
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 60 (201)
+.++|+.||||.++..+++... +|+|++++++.++.|+.+...+++.|.+|+++-+++
T Consensus 385 k~llDv~CGTG~iglala~~~~-~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVK-RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhcccc-ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 5789999999999998887654 999999999999999999999999999999996665
No 251
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.88 E-value=6.1e-05 Score=57.56 Aligned_cols=91 Identities=25% Similarity=0.380 Sum_probs=64.9
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC---CCCceeEEEeccccc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF---SNDCFDVVIEKATME 78 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~~~~~l~ 78 (201)
-++|||||=+...... ..+.-.|+.||+++. .-.+.+.|....|. +.++||+|.++.++.
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 3789999864433221 122227999999662 22446667666554 357899999999998
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE-----EEEEecC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL-----FISVSFG 121 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~-----l~~~~~~ 121 (201)
++ ......-+++.++.+.|+|+|. ++++.+.
T Consensus 116 fV------------P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 116 FV------------PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred eC------------CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 87 2446778999999999999999 8877543
No 252
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.86 E-value=9.2e-05 Score=58.57 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=68.6
Q ss_pred cEEEecCCC--ChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----------CCCCc
Q 028957 3 SVLELGCGN--SRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----------FSNDC 67 (201)
Q Consensus 3 ~vLDlG~G~--G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~~ 67 (201)
..||||||- -..+.++++. .+. +|+-+|.++-.+..++..+....-....++++|+.+.. +....
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~r 150 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDR 150 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCC
Confidence 579999994 3455566655 344 99999999999999998887764223889999987631 11122
Q ss_pred eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
.=.++...++|++ ...++...+++.+...|.||.+|.+...+.
T Consensus 151 PVavll~~vLh~v------------~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 151 PVAVLLVAVLHFV------------PDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp --EEEECT-GGGS-------------CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CeeeeeeeeeccC------------CCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 2256677888887 233567899999999999999999876554
No 253
>PRK10742 putative methyltransferase; Provisional
Probab=97.82 E-value=0.00022 Score=55.83 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=56.1
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc------C--C-CceEEEEcccCCC-CCCCCceeEEE
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK------G--Y-KEVKVLEADMLDL-PFSNDCFDVVI 72 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~------~--~-~~i~~~~~d~~~~-~~~~~~~D~v~ 72 (201)
+|||+.+|+|..+..++.+|+ .|+++|-++.+....++++... + + .+++++.+|.... .-...+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 799999999999999999998 6999999999998888887763 2 1 4688899988653 21223688887
Q ss_pred e
Q 028957 73 E 73 (201)
Q Consensus 73 ~ 73 (201)
.
T Consensus 170 l 170 (250)
T PRK10742 170 L 170 (250)
T ss_pred E
Confidence 4
No 254
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.00017 Score=53.78 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=63.4
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccCCC--------CCCCCcee
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLDL--------PFSNDCFD 69 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~--------~~~~~~~D 69 (201)
+.+|||+||.+|.+++-..+. ++. .|.|+|+-.- .+ ...+.++++ |+.+. .++....|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p---~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EP---PEGATIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cC---CCCcccccccccCCHHHHHHHHHhCCCCccc
Confidence 478999999999999988776 354 8999998321 11 123455555 55442 14567889
Q ss_pred EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
+|++.+.-... +.--.+-....+-...++.-....++|+|.+++-.+...
T Consensus 139 vVlSDMapnaT----Gvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 139 VVLSDMAPNAT----GVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred EEEeccCCCCc----CcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 99975432111 000000001112233344444566789999998877653
No 255
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.70 E-value=0.00023 Score=53.46 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=69.4
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHH------HHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEE
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAV------EKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVI 72 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~------~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 72 (201)
|++|+|+=.|.|.++..++.. +++ .|++.-..+... .............|++.+-.+...+. +....|+++
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~~ 127 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLVP 127 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccccc
Confidence 578999999999999999876 444 677665443211 11111111122234455544444444 446678887
Q ss_pred eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
.....|.+..- +. +.....++...+++.|||||.+.+.++.
T Consensus 128 ~~~~yhdmh~k-------~i-~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 128 TAQNYHDMHNK-------NI-HPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cchhhhhhhcc-------cc-CcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 76555544211 11 2345788999999999999999988764
No 256
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.70 E-value=0.00062 Score=51.94 Aligned_cols=111 Identities=23% Similarity=0.281 Sum_probs=65.4
Q ss_pred CcEEEecCCCChhhHHHHhc-CC--CeEEEEECCHHHHHHHHHHHhhc--------------------------------
Q 028957 2 TSVLELGCGNSRLSEGLYND-GI--TAITCIDLSAVAVEKMQERLLLK-------------------------------- 46 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~-~~--~~v~~vD~~~~~~~~~~~~~~~~-------------------------------- 46 (201)
-++.|-+||+|++..-+.-. +. ..|++.|+++++++.|.+|+.-.
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~ 132 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD 132 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 47899999999988877544 22 28999999999999999886221
Q ss_pred ----------CCCceEEEEcccCCCC-----CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccC
Q 028957 47 ----------GYKEVKVLEADMLDLP-----FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP 111 (201)
Q Consensus 47 ----------~~~~i~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 111 (201)
+.......+.|+++-. -.....|+|+..-....+ ..|.-+ .......+++..+.++| |
T Consensus 133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~-----t~W~g~-~~~~p~~~ml~~l~~vL-p 205 (246)
T PF11599_consen 133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEM-----TSWQGE-GSGGPVAQMLNSLAPVL-P 205 (246)
T ss_dssp HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCS-----SSTTS----HHHHHHHHHHHHCCS--
T ss_pred HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccc-----ccccCC-CCCCcHHHHHHHHHhhC-C
Confidence 1223557788887621 112346999976555444 345431 23445789999999999 5
Q ss_pred CcEEEEEe
Q 028957 112 DGLFISVS 119 (201)
Q Consensus 112 gG~l~~~~ 119 (201)
+..++.++
T Consensus 206 ~~sVV~v~ 213 (246)
T PF11599_consen 206 ERSVVAVS 213 (246)
T ss_dssp TT-EEEEE
T ss_pred CCcEEEEe
Confidence 55544443
No 257
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.69 E-value=2.4e-05 Score=53.36 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=42.0
Q ss_pred EEecCCCChhhHHHHhcC---C-CeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCC--CCCCCceeEEEecccc
Q 028957 5 LELGCGNSRLSEGLYNDG---I-TAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDL--PFSNDCFDVVIEKATM 77 (201)
Q Consensus 5 LDlG~G~G~~~~~l~~~~---~-~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l 77 (201)
||+|+..|..+..+++.. . .+++++|..+. .+...+.++..+ ..++++++++..+. .++..++|+++..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 689999999888877652 1 27999999885 222222322222 24789999987542 132468899885321
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+..+.....++.+.+.|+|||.+++-
T Consensus 79 ---------------H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 ---------------HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -----------------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ---------------CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 13366778899999999999998864
No 258
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00073 Score=51.09 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=73.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~~~ 76 (201)
|++||=||+.+|+....++.--.. .++++++++.+.+......... +|+-.+.+|+..-. .--+..|+|+..-
T Consensus 77 g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV- 153 (231)
T COG1889 77 GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQDV- 153 (231)
T ss_pred CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEEec-
Confidence 578999999999999988876333 8999999999888877766554 58888999987632 1124578877521
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
......+-+..+....|++||.+++.
T Consensus 154 ----------------AQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 154 ----------------AQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ----------------CCchHHHHHHHHHHHhcccCCeEEEE
Confidence 12234566788889999999987664
No 259
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0021 Score=52.84 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=79.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCC---C--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---------CCCC
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI---T--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---------FSND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~---~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~ 66 (201)
|.+|||+++.+|+-+..+++... . .|++=|.++..+......+.....+++.+...|+...+ ....
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~ 235 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQL 235 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhh
Confidence 57899999999999988887632 2 79999999999988888876655556667777765543 1234
Q ss_pred ceeEEEeccc-cc-eeeecCCCC----CCCCC-ccH-HHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 67 CFDVVIEKAT-ME-VLFVNSGDP----WNPQP-ETV-TKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 67 ~~D~v~~~~~-l~-~~~~~~~~~----~~~~~-~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
.||-|++.-. -+ ..+-...+= |.... .+. .-..+++.+..++||+||+++..+++-
T Consensus 236 ~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 236 KFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 6898885211 00 000000010 21111 111 124578999999999999999988764
No 260
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.33 E-value=0.001 Score=53.94 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=56.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----CCCCceeEEEe
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----FSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~~ 73 (201)
|..++|..+|.|+.+..+++..+ .+|+|+|.++.+++.+++++.... .++.+++++..++. ....++|.|+.
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGILV 98 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEEE
Confidence 45799999999999999998732 499999999999999999886543 47888888876542 23356787775
No 261
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.33 E-value=0.0012 Score=53.33 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=45.7
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhc-C-CCceEEEEcccC----C-CCCCCCceeEEEe
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLK-G-YKEVKVLEADML----D-LPFSNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~-~-~~~i~~~~~d~~----~-~~~~~~~~D~v~~ 73 (201)
-++||+|+|..-+=..+....+. +++|+|+++..++.|++++..+ . ..+|.++...-. . +..+...||..+|
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence 36899999987543333333223 9999999999999999999888 4 346777654321 1 1123468999999
Q ss_pred ccccce
Q 028957 74 KATMEV 79 (201)
Q Consensus 74 ~~~l~~ 79 (201)
+-.|+.
T Consensus 184 NPPFy~ 189 (299)
T PF05971_consen 184 NPPFYS 189 (299)
T ss_dssp -----S
T ss_pred CCcccc
Confidence 877754
No 262
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.0033 Score=45.26 Aligned_cols=103 Identities=14% Similarity=0.213 Sum_probs=74.3
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
.+.+|+|+|.|.+....++.+....+++++++-.+.+++-+.-..+ .++..|..-|+.+..+.+-.+-+|+.
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg------- 146 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG------- 146 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee-------
Confidence 4689999999999999999885589999999999988877655555 45688999998887765544434332
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
...-+..+-.++..-+..+..++.+-|.-|.
T Consensus 147 -------------aes~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 147 -------------AESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred -------------hHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 1123344555666677788888877665554
No 263
>PHA01634 hypothetical protein
Probab=97.25 E-value=0.0021 Score=45.08 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=42.8
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG 47 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~ 47 (201)
+++|+|+|++-|.-++.++.+|.+.|++++.++...+..+++.+...
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 57999999999999999999999999999999999999999876653
No 264
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.24 E-value=0.00058 Score=52.61 Aligned_cols=105 Identities=23% Similarity=0.257 Sum_probs=68.6
Q ss_pred CcEEEecCCCChhhHHHHhcC--------CC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------C
Q 028957 2 TSVLELGCGNSRLSEGLYNDG--------IT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------F 63 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~--------~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~ 63 (201)
+++.|+++.+|.+++.+.+.. .. +++++|+.+- ..++.+.-+++|+.+.. |
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHHh
Confidence 478999999999999887751 11 3999998542 23557888999987642 5
Q ss_pred CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
...+.|+|+|.+.-+.. +.|-++.--..+-+..++.-...+|+|||.++.-.+-
T Consensus 112 ggekAdlVvcDGAPDvT----GlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVT----GLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred CCCCccEEEeCCCCCcc----ccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 56689999997654432 1110000001112445666677899999999865443
No 265
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.22 E-value=0.0017 Score=50.78 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=58.0
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccce
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEV 79 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 79 (201)
+.+|+|+|||.=-++..+....+. .++|+|++..+++.....+...+. +..+...|...- .+....|+.+.--+++.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~-~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSD-PPKEPADLALLLKTLPC 183 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTS-HTTSEESEEEEET-HHH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeecc-CCCCCcchhhHHHHHHH
Confidence 468999999998888877766544 999999999999999988877763 667777787664 33567899997655555
Q ss_pred e
Q 028957 80 L 80 (201)
Q Consensus 80 ~ 80 (201)
+
T Consensus 184 l 184 (251)
T PF07091_consen 184 L 184 (251)
T ss_dssp H
T ss_pred H
Confidence 4
No 266
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0018 Score=51.78 Aligned_cols=108 Identities=23% Similarity=0.286 Sum_probs=80.1
Q ss_pred CCcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcC----CCceEEEEcccCCC--CCCCCceeEEEe
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKG----YKEVKVLEADMLDL--PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~----~~~i~~~~~d~~~~--~~~~~~~D~v~~ 73 (201)
++++|-+|.|.|......+++.. .++..+|++...++..++-++... -+++.+.-+|...+ ..+.++||+|+.
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~ 201 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIIT 201 (337)
T ss_pred CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEE
Confidence 47899999999999999988832 389999999999998888765442 25788888887653 244789999985
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
++++|-.+ ....-.+.....+.+.||++|.++...
T Consensus 202 ---------dssdpvgp--a~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 202 ---------DSSDPVGP--ACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ---------ecCCccch--HHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 23344322 112235677888899999999988764
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.17 E-value=0.0013 Score=50.27 Aligned_cols=102 Identities=19% Similarity=0.131 Sum_probs=54.8
Q ss_pred CCcEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHH-HHHHHHhhcCCCceEEEEcccCCCC--------CCCC
Q 028957 1 MTSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVE-KMQERLLLKGYKEVKVLEADMLDLP--------FSND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~-~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 66 (201)
|+.|+|+|.-.|+-+..+|.. +.. +|+++|++..... .+.+... ..++|+++++|..+.. ....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp--~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHP--MSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG------TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhcc--ccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 578999999999877776653 233 9999999643321 1111111 1358999999976532 1122
Q ss_pred ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
...+|+... + +..+...+.++....++++|+++++.+.
T Consensus 111 ~~vlVilDs--~--------------H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 111 HPVLVILDS--S--------------HTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSEEEEESS--------------------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CceEEEECC--C--------------ccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 344555321 1 1235567888889999999999987654
No 268
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.15 E-value=0.0044 Score=49.20 Aligned_cols=102 Identities=21% Similarity=0.280 Sum_probs=77.3
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC---CCceeEEEeccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS---NDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v~~~~~ 76 (201)
|+.|+-+| -.-..+++++.. .++++..+|+++..++...+.....+++++..+..|+.+ |+| ..+||+.+.
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiT--- 227 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFIT--- 227 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeec---
Confidence 46788888 334444444444 455999999999999999999988899889999999887 333 358999885
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC---cEEEEEec
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD---GLFISVSF 120 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g---G~l~~~~~ 120 (201)
++|+.....+.++.+-...|+.- |++.+...
T Consensus 228 -------------DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 228 -------------DPPETIKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred -------------CchhhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 34467777888999988899877 66665543
No 269
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.11 E-value=0.0015 Score=52.46 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=52.4
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC--CCceeEEEec
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS--NDCFDVVIEK 74 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~v~~~ 74 (201)
+++|+.||.|.++..+.+.|...+.++|+++.+++..+.+.... .+.+|+.++... ...+|+++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeC
Confidence 79999999999999998888878999999999999888876421 466777665422 3568999864
No 270
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.09 E-value=0.0024 Score=51.68 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=69.2
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEccc--CCC------CCCCCceeE
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM--LDL------PFSNDCFDV 70 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~~~------~~~~~~~D~ 70 (201)
|.+||-+|+|+ |..+...|+. |..+|+.+|+.+..++.|++ +.. ..+....... ..+ ......+|+
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga---~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA---TVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC---eEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 67999999998 7777777776 66699999999999999998 322 1222211111 110 122345788
Q ss_pred EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccc
Q 028957 71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFF 130 (201)
Q Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 130 (201)
++.-..+ ...++.....++++|.+++..+..+...-++.
T Consensus 246 ~~dCsG~---------------------~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~ 284 (354)
T KOG0024|consen 246 TFDCSGA---------------------EVTIRAAIKATRSGGTVVLVGMGAEEIQFPII 284 (354)
T ss_pred EEEccCc---------------------hHHHHHHHHHhccCCEEEEeccCCCccccChh
Confidence 8753222 45666678889999998888877655443333
No 271
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.08 E-value=0.0065 Score=47.32 Aligned_cols=103 Identities=14% Similarity=0.207 Sum_probs=67.1
Q ss_pred CCcEEEecCCCChhhHHHHhc-CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYND-GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~-~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|.+||-||+++|+....+... ++. -|++++.+...-+.+..-... .+||-.+..|+... .+|-+.+- +.+
T Consensus 157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArhP----~KYRmlVg--mVD 228 (317)
T KOG1596|consen 157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARHP----AKYRMLVG--MVD 228 (317)
T ss_pred CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCCc----hheeeeee--eEE
Confidence 578999999999988888776 555 899999987655444432222 25788888888762 23333332 234
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.+|.|-..| ...+-+.-+....||+||-+++..
T Consensus 229 vIFaDvaqp--------dq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 229 VIFADVAQP--------DQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEeccCCCc--------hhhhhhhhhhhhhhccCCeEEEEE
Confidence 444332221 334555667788999999988753
No 272
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.04 E-value=0.015 Score=45.79 Aligned_cols=106 Identities=17% Similarity=0.092 Sum_probs=62.9
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-----C-CceEEEEcccCCC---CCCCCc-eeEE
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-----Y-KEVKVLEADMLDL---PFSNDC-FDVV 71 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-----~-~~i~~~~~d~~~~---~~~~~~-~D~v 71 (201)
.+|||+|+|+|..+..++.....+|...|... .+...+.+...+. . ..+.+...++... .+.... +|++
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 46999999999888877776555899998743 3433333322111 1 1445555554432 122233 8999
Q ss_pred EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
+++-++.. .+....++..+...|..+|.+++...-+.
T Consensus 167 lasDvvy~---------------~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 167 LASDVVYE---------------EESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEeeeeec---------------CCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 98655422 13345566667777778886666554443
No 273
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.98 E-value=0.0066 Score=50.10 Aligned_cols=122 Identities=15% Similarity=0.209 Sum_probs=64.6
Q ss_pred cEEEecCCCChhhHHHHhc------------C----CC-eEEEEECCHHHHHHHHHHHhhc-----CCCc--eEEEEccc
Q 028957 3 SVLELGCGNSRLSEGLYND------------G----IT-AITCIDLSAVAVEKMQERLLLK-----GYKE--VKVLEADM 58 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~------------~----~~-~v~~vD~~~~~~~~~~~~~~~~-----~~~~--i~~~~~d~ 58 (201)
+|+|+||.+|..+..+... . +. .|+.-|+-..--...-+.+... ..++ +.-+.+..
T Consensus 19 ~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpgSF 98 (334)
T PF03492_consen 19 RIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPGSF 98 (334)
T ss_dssp EEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES-T
T ss_pred EEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCchh
Confidence 7999999999988777542 1 12 7888886432221111111111 0123 33456666
Q ss_pred CCCCCCCCceeEEEeccccceeeec-------CCCCCCCC------Ccc-----------HHHHHHHHHHHhhcccCCcE
Q 028957 59 LDLPFSNDCFDVVIEKATMEVLFVN-------SGDPWNPQ------PET-----------VTKVMAMLEGVHRVLKPDGL 114 (201)
Q Consensus 59 ~~~~~~~~~~D~v~~~~~l~~~~~~-------~~~~~~~~------~~~-----------~~~~~~~l~~~~~~L~~gG~ 114 (201)
..--+|.++.|+++++.++|++--- .+.+|++. ... ..+...+|+.=.+-|+|||+
T Consensus 99 y~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~ 178 (334)
T PF03492_consen 99 YGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGR 178 (334)
T ss_dssp TS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred hhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcE
Confidence 6545889999999999999988221 11234432 001 13345666666778999999
Q ss_pred EEEEecCCcc
Q 028957 115 FISVSFGQPH 124 (201)
Q Consensus 115 l~~~~~~~~~ 124 (201)
+++.....+.
T Consensus 179 mvl~~~gr~~ 188 (334)
T PF03492_consen 179 MVLTFLGRDE 188 (334)
T ss_dssp EEEEEEE-ST
T ss_pred EEEEEeeccc
Confidence 9988766554
No 274
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.90 E-value=0.0032 Score=49.02 Aligned_cols=71 Identities=25% Similarity=0.338 Sum_probs=46.1
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHH---hhcC------CCceEEEEcccCC-CCCCCCceeEE
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL---LLKG------YKEVKVLEADMLD-LPFSNDCFDVV 71 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~---~~~~------~~~i~~~~~d~~~-~~~~~~~~D~v 71 (201)
.+|||..+|-|..+..++..|+ +|+++|-++-+....++-+ .... ..+++++.+|..+ +..+..+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 3899999999999999998887 8999999987655444432 2211 1478999999887 44556899999
Q ss_pred Ee
Q 028957 72 IE 73 (201)
Q Consensus 72 ~~ 73 (201)
..
T Consensus 156 Y~ 157 (234)
T PF04445_consen 156 YF 157 (234)
T ss_dssp EE
T ss_pred EE
Confidence 95
No 275
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.90 E-value=0.0012 Score=56.36 Aligned_cols=122 Identities=14% Similarity=0.239 Sum_probs=72.8
Q ss_pred CcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccC-CCCCCCCceeEEEeccccc
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML-DLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~v~~~~~l~ 78 (201)
..|+|+.+|.|+++..|.+...= +|+-+ ..+..+....++ | +--+..|+- .++.-+.+||++-+..+|.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----G---LIG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----G---LIGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----c---cchhccchhhccCCCCcchhheehhhhhh
Confidence 36899999999999998766320 22222 122222222221 1 111333433 2444458999999887776
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcccccccc-cCCCCceEEEEEEeC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHFRRPFF-NAPQFTWSVEWITFG 145 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 145 (201)
.. .+.-++..++-++-|+|+|+|.+++.+... ....+. ......|........
T Consensus 439 ~~------------~~rC~~~~illEmDRILRP~G~~iiRD~~~--vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 439 LY------------KDRCEMEDILLEMDRILRPGGWVIIRDTVD--VLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred hh------------cccccHHHHHHHhHhhcCCCceEEEeccHH--HHHHHHHHHHhCcceEEEEecC
Confidence 54 233457899999999999999999876432 111111 134567776665443
No 276
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.89 E-value=0.003 Score=52.44 Aligned_cols=99 Identities=23% Similarity=0.236 Sum_probs=65.9
Q ss_pred CcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccC-C-CCCCC-CceeEEEecc
Q 028957 2 TSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DML-D-LPFSN-DCFDVVIEKA 75 (201)
Q Consensus 2 ~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~-~-~~~~~-~~~D~v~~~~ 75 (201)
.+|+-+|||+ |.++..+++. |..+|+++|.+++.++.|++..... .+..... +.. . ..... ..+|+++-..
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 3799999998 8887777776 5569999999999999998753221 1111111 110 0 01112 3689998532
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
. ....+..+.+.++++|++.+.......
T Consensus 247 G---------------------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 247 G---------------------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred C---------------------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 2 245788899999999999987665433
No 277
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.86 E-value=0.006 Score=51.13 Aligned_cols=98 Identities=24% Similarity=0.349 Sum_probs=72.4
Q ss_pred cEEEecCCCChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcCCCc--eEEEEcccCCCC-CCCCceeEEEecccc
Q 028957 3 SVLELGCGNSRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKE--VKVLEADMLDLP-FSNDCFDVVIEKATM 77 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~~--i~~~~~d~~~~~-~~~~~~D~v~~~~~l 77 (201)
+|||.-+|+|-=++-.+.. +..+|++-|+++++++.+++|++.+++.. +.+...|+..+- .....||+|=.
T Consensus 52 ~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl---- 127 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL---- 127 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE----
T ss_pred eEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe----
Confidence 7999999999888877776 33499999999999999999999888654 788888987642 24578999863
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
||+ -....++....+.++.||.+.+..
T Consensus 128 --------DPf-------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 --------DPF-------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----------S-------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred --------CCC-------CCccHhHHHHHHHhhcCCEEEEec
Confidence 222 234678899999999999988764
No 278
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.0043 Score=50.02 Aligned_cols=101 Identities=19% Similarity=0.334 Sum_probs=63.9
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHH---hhcC-------------------------CCceE-
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL---LLKG-------------------------YKEVK- 52 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~---~~~~-------------------------~~~i~- 52 (201)
-+||--|||.|.++..++..|+ .+-|-++|--|+-...=.+ ...+ +|.+.
T Consensus 152 i~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 152 IRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred ceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 3689999999999999999988 6777787776654332222 1000 00000
Q ss_pred -----------EEEcccCCC---CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 53 -----------VLEADMLDL---PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 53 -----------~~~~d~~~~---~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
.-.+|.... +-..+.||+|+..+.++. .......++.+..+|+|||..+-+
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT---------------a~NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT---------------AHNILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec---------------hHHHHHHHHHHHHhccCCcEEEec
Confidence 111232211 112346999987655543 367788899999999999997754
No 279
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.70 E-value=0.0035 Score=52.74 Aligned_cols=53 Identities=21% Similarity=0.324 Sum_probs=46.0
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEE
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLE 55 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~ 55 (201)
.|||+|+|||.++.++++.|...|++++.-..|.+.|++....++ .++|+++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence 589999999999999999998899999999999999999888777 45566654
No 280
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.64 E-value=0.00094 Score=45.55 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=34.0
Q ss_pred ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+||+|+|-.+--++..+ .+++.+..+++++++.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn---------~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLN---------WGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHH---------HHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEec---------CcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999997777666555 34577999999999999999999864
No 281
>PRK11524 putative methyltransferase; Provisional
Probab=96.62 E-value=0.0049 Score=49.66 Aligned_cols=44 Identities=16% Similarity=0.073 Sum_probs=39.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL 45 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~ 45 (201)
|+.|||..||+|+.+....+.+. +++|+|++++.++.+++++..
T Consensus 209 GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 67899999999999998888877 999999999999999999753
No 282
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.58 E-value=0.025 Score=47.39 Aligned_cols=122 Identities=14% Similarity=0.202 Sum_probs=67.1
Q ss_pred cEEEecCCCChhhHHHHhc---------------CCC-eEEEEECCHHHHHHHHHHHhh--------------cCCCc--
Q 028957 3 SVLELGCGNSRLSEGLYND---------------GIT-AITCIDLSAVAVEKMQERLLL--------------KGYKE-- 50 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~---------------~~~-~v~~vD~~~~~~~~~~~~~~~--------------~~~~~-- 50 (201)
+|+|+|||+|..+..+... .+. .|+.-|+-..--...-+.+.. .+.+.
T Consensus 66 ~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f 145 (386)
T PLN02668 66 TAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYF 145 (386)
T ss_pred eEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceE
Confidence 6999999999877655321 122 677777643222222222211 01001
Q ss_pred eEEEEcccCCCCCCCCceeEEEeccccceeeecCC-------CCCCCC------C----------ccHHHHHHHHHHHhh
Q 028957 51 VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSG-------DPWNPQ------P----------ETVTKVMAMLEGVHR 107 (201)
Q Consensus 51 i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~-------~~~~~~------~----------~~~~~~~~~l~~~~~ 107 (201)
+.-+.+....--+|.++.++++++.++|++---+. ..|++. . .-..|...+|+.-.+
T Consensus 146 ~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ 225 (386)
T PLN02668 146 AAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQ 225 (386)
T ss_pred EEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233444333478899999999999987721110 122221 0 001234456666677
Q ss_pred cccCCcEEEEEecCCcc
Q 028957 108 VLKPDGLFISVSFGQPH 124 (201)
Q Consensus 108 ~L~~gG~l~~~~~~~~~ 124 (201)
-|.|||++++....++.
T Consensus 226 ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 226 EMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HhccCcEEEEEEecCCC
Confidence 89999999988776643
No 283
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.55 E-value=0.034 Score=48.33 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=77.4
Q ss_pred CcEEEecCCCChhhHHHHhcC-----CCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCC-C----CCCceeE
Q 028957 2 TSVLELGCGNSRLSEGLYNDG-----ITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP-F----SNDCFDV 70 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~-----~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~-~----~~~~~D~ 70 (201)
.+|+|-.||+|++.....+.. ...++|.|.++.....++.++--++.. .+....+|-..-+ . ..+.||.
T Consensus 188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~ 267 (489)
T COG0286 188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDF 267 (489)
T ss_pred CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeE
Confidence 479999999999888776652 127999999999999999998877754 3455555544333 2 3367999
Q ss_pred EEeccccc-eeeecCC--CC-------CCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 71 VIEKATME-VLFVNSG--DP-------WNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 71 v~~~~~l~-~~~~~~~--~~-------~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
|+++-.+. .-+.... .. +...+........+++.+...|+|||+.-++.+.
T Consensus 268 viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 268 VIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred EEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 99876553 1111000 00 1101111122378999999999999876555443
No 284
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.48 E-value=0.0015 Score=52.19 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=54.4
Q ss_pred CcEEEecCCCChhhH-HHHhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCCCCCCceeEEEe
Q 028957 2 TSVLELGCGNSRLSE-GLYNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLPFSNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~-~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~D~v~~ 73 (201)
..|.|+=+|-|+++. .+...|.+.|+++|.++..++..++++..++ ..+...+.+|-+. +.+....|-|..
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnL 268 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNL 268 (351)
T ss_pred chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheee
Confidence 468899999999999 6677788899999999999999999988775 2334556666554 334566777763
No 285
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.32 E-value=0.017 Score=47.49 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=57.8
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
|++||-.|||. |..+..+++. |..+|+++|.+++.++.+++. +...+ .....+........+.+|+|+....
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid~~G- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFEVSG- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEECCC-
Confidence 46788888865 6666667666 554799999999888877652 22111 1111111111111235888884211
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
....++...+.|+++|+++....
T Consensus 245 --------------------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 --------------------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --------------------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12456777888999999988754
No 286
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.31 E-value=0.012 Score=48.24 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=54.5
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHH-------HHHHHHhhcCC-C-ceEEEEcccCCCCC-CCCceeE
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVE-------KMQERLLLKGY-K-EVKVLEADMLDLPF-SNDCFDV 70 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~-------~~~~~~~~~~~-~-~i~~~~~d~~~~~~-~~~~~D~ 70 (201)
|+.|+|--.|||.+....+..|. .|+|.|++-.++. ..+.|++..+. + -+.++.+|...-+. ....||+
T Consensus 209 GdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDa 287 (421)
T KOG2671|consen 209 GDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDA 287 (421)
T ss_pred CCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeE
Confidence 67899999999999998888887 9999999988887 34456665552 2 25677888776442 2457999
Q ss_pred EEe
Q 028957 71 VIE 73 (201)
Q Consensus 71 v~~ 73 (201)
|+|
T Consensus 288 Ivc 290 (421)
T KOG2671|consen 288 IVC 290 (421)
T ss_pred EEe
Confidence 997
No 287
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.0013 Score=47.61 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=44.7
Q ss_pred eEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 51 VKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 51 i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+.+++.......|.+++.|+|.+..++.++ ..++...++++++++|||||++-+..+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHl-------------t~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHL-------------TYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 344443334456889999999998888877 3466789999999999999999876543
No 288
>PRK13699 putative methylase; Provisional
Probab=96.19 E-value=0.014 Score=45.47 Aligned_cols=45 Identities=20% Similarity=0.102 Sum_probs=39.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK 46 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~ 46 (201)
|+.|||..||+|+.+....+.+. +++|+|++++..+.+.+++...
T Consensus 164 g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 164 NAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 57899999999999998888877 8999999999999999887653
No 289
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.16 E-value=0.01 Score=48.26 Aligned_cols=63 Identities=21% Similarity=0.370 Sum_probs=51.8
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEe
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIE 73 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~ 73 (201)
+++|+.||.|.++.-+.+.|...+.++|+++.+.+.-+.|+. ....+|+..+. ++. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc-cceEEEe
Confidence 799999999999999999998899999999999998888864 77888888764 333 5899885
No 290
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.11 E-value=0.042 Score=45.28 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=62.1
Q ss_pred CCcEEEecCC-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc-cCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCG-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-MLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~D~v~~~~~l 77 (201)
|++|+-.|+| -|.++.++++. + .+|+++|.+++-.+.+++.-. -.++... ......-.+.+|+++....
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA------d~~i~~~~~~~~~~~~~~~d~ii~tv~- 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA------DHVINSSDSDALEAVKEIADAIIDTVG- 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC------cEEEEcCCchhhHHhHhhCcEEEECCC-
Confidence 4677778887 36788888884 6 499999999999888876422 1333322 1111111123899986321
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
...+....+.|+++|+++++...
T Consensus 239 ---------------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---------------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---------------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 45777888999999999988665
No 291
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.09 E-value=0.0065 Score=44.39 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=64.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceE-EEEcccCC-CCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADMLD-LPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~-~~~~~~~~D~v~~~~~l~ 78 (201)
|++.+-+|+..=-.=...++.|..+++.+|.++--++.- + .++++ +...|... ...-.++||.+.|..+++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~---~----~dr~ssi~p~df~~~~~~y~~~fD~~as~~siE 74 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE---F----RDRLSSILPVDFAKNWQKYAGSFDFAASFSSIE 74 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc---c----ccccccccHHHHHHHHHHhhccchhhheechhc
Confidence 567888887755555555666777899999765211110 0 01111 11222111 111246799999877775
Q ss_pred ee-eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 79 VL-FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
+. +.-.++|..+ ..-.+.+.++.++||+||.+++..+-.
T Consensus 75 h~GLGRYGDPidp-----~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 75 HFGLGRYGDPIDP-----IGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred cccccccCCCCCc-----cccHHHHHHHHHhhccCCeEEEEeecC
Confidence 44 4444555432 233577889999999999999876543
No 292
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.04 E-value=0.051 Score=47.33 Aligned_cols=96 Identities=19% Similarity=0.332 Sum_probs=61.8
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-----------C--C---
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-----------L--P--- 62 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-----------~--~--- 62 (201)
|++|+-+|||. |..+...++. |. .|+++|.+++.++.+++. +. .++..|..+ + .
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA---~~v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GA---EFLELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC---eEEEeccccccccccchhhhcchhHHH
Confidence 57899999998 7777777766 65 899999999999888762 22 211111100 0 0
Q ss_pred -----CC--CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHH-HHHHhhcccCCcEEEEEec
Q 028957 63 -----FS--NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAM-LEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 63 -----~~--~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~L~~gG~l~~~~~ 120 (201)
+. .+.+|+|+...... . .....+ .++..+.+||||.++.+..
T Consensus 237 ~~~~~~~~~~~gaDVVIetag~p---------------g-~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTALIP---------------G-KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHhccCCCCEEEECCCCC---------------c-ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01 13589999643320 0 111234 5889999999999887765
No 293
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.99 E-value=0.013 Score=50.40 Aligned_cols=102 Identities=22% Similarity=0.357 Sum_probs=73.1
Q ss_pred cEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957 3 SVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
.|+-+|+|.|-+.....+. ..+ ++++++-++.++...+.+--..--.++.++..|++..+.+..+.|++++-
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE--- 446 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE--- 446 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH---
Confidence 5788999999888776554 223 89999999998877765322212357999999999987656789998852
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 117 (201)
++.+|++ -+-....|..+.+.|||+|+.+=
T Consensus 447 --LLGSFGD--------NELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 447 --LLGSFGD--------NELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred --hhccccC--------ccCCHHHHHHHHhhcCCCceEcc
Confidence 1222222 13346788999999999988763
No 294
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.95 E-value=0.02 Score=46.56 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=51.8
Q ss_pred CcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-CCCceeEEEe
Q 028957 2 TSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-SNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~~D~v~~ 73 (201)
..++|..-|.|+.+..+++..+ .+++|+|.++.+++.+++++... .+++.++..+..++. . ...++|-|+.
T Consensus 22 g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 22 GIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp -EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEEE
T ss_pred ceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEEE
Confidence 5689999999999999998744 49999999999999999887654 357899998876642 3 3457787774
No 295
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.032 Score=46.08 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEeccccc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~l~ 78 (201)
+.+|+|--+|+|.=++-.+..... +++.-|+++.+++.+++|+..+...+...+..|+..+-. ....||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec-----
Confidence 357999999999888888776444 899999999999999999988743455666678765422 1367888752
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
||+. ....++....+.++.+|.+.+..
T Consensus 128 -------DPFG-------SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 -------DPFG-------SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred -------CCCC-------CCchHHHHHHHHhhcCCEEEEEe
Confidence 3332 22457777788888899988653
No 296
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.17 Score=39.88 Aligned_cols=105 Identities=24% Similarity=0.262 Sum_probs=68.6
Q ss_pred CCcEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHHhhc-CCCceEEEEcccCC-C-CCCCCceeEE-
Q 028957 1 MTSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLD-L-PFSNDCFDVV- 71 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~-~-~~~~~~~D~v- 71 (201)
+.+.+|+|+|+..-+..+... +.. .++.+|++...++...+.+... .--.+.-+++|... + ..+...--+.
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 467899999999888877654 333 8999999999987665544322 11134556777543 1 1222222222
Q ss_pred EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+....+..+ .+.+...++..+...|+||-++++-
T Consensus 159 flGStlGN~-------------tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 159 FLGSTLGNL-------------TPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EecccccCC-------------ChHHHHHHHHHHHhcCCCcceEEEe
Confidence 222333332 4578899999999999999998763
No 297
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.33 E-value=0.096 Score=42.49 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=54.9
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+++||-+|||. |.++..+++. |...++++|.+++.++.+... . ++ |.... ....+|+|+-...
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~--~~~g~Dvvid~~G-- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD--PRRDYRAIYDASG-- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc--cCCCCCEEEECCC--
Confidence 45788888876 7777777765 554677889888776655431 1 01 11110 1245898885321
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
-...++.+.+.|+++|++++....
T Consensus 210 -------------------~~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 210 -------------------DPSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred -------------------CHHHHHHHHHhhhcCcEEEEEeec
Confidence 124567788899999999877543
No 298
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.044 Score=46.60 Aligned_cols=110 Identities=12% Similarity=0.151 Sum_probs=64.6
Q ss_pred CcEEEecCCCChhhHHH--HhcC-CCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc-c-C--CCCCC-CCceeEEEe
Q 028957 2 TSVLELGCGNSRLSEGL--YNDG-ITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-M-L--DLPFS-NDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l--~~~~-~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d-~-~--~~~~~-~~~~D~v~~ 73 (201)
+.++|+|.|.|.-...+ +... ...+..||.+..|.......+.... ..-..+... . . .++.. .+.||+|++
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~-~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS-HIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh-hcCchhccccchhcccCCCCcccceeeEEe
Confidence 34567777765444333 3333 2389999999999999988876511 011111111 1 1 12332 356999999
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHH-hhcccCCcEEEEEecCCcc
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGV-HRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~~gG~l~~~~~~~~~ 124 (201)
...++.+ .+........++. ....++|+.+++++...+.
T Consensus 281 ah~l~~~------------~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 281 AHKLHEL------------GSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred eeeeecc------------CCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 8877765 1223334444444 4566889998888766543
No 299
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.10 E-value=0.033 Score=44.02 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=34.6
Q ss_pred CcEEEecCCCChhhHHHHhc---C-C-----CeEEEEECCHHHHHHHHHHHhh
Q 028957 2 TSVLELGCGNSRLSEGLYND---G-I-----TAITCIDLSAVAVEKMQERLLL 45 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~---~-~-----~~v~~vD~~~~~~~~~~~~~~~ 45 (201)
-+|+|+|+|+|.++..+++. . + .+++.+|.|+.+.+..++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 37999999999999998774 1 1 2899999999998888888765
No 300
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.04 E-value=0.13 Score=41.57 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=49.5
Q ss_pred CcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 61 (201)
...+|..-|.|+.+..+++..+. +++++|-++.+++.+++.+...+ +++.+++.+...+
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l 85 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANL 85 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHH
Confidence 46789999999999999998653 79999999999999999987655 5788888876543
No 301
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.99 E-value=0.18 Score=41.67 Aligned_cols=94 Identities=20% Similarity=0.252 Sum_probs=55.2
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEEC---CHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDL---SAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~---~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 75 (201)
|.+||-.|+|. |.++..+++. +. +|++++. ++...+.+++ .+...+.....+.... ...+.+|+|+-..
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~~v~~~~~~~~~~-~~~~~~d~vid~~ 246 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGATYVNSSKTPVAEV-KLVGEFDLIIEAT 246 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCEEecCCccchhhh-hhcCCCCEEEECc
Confidence 46788888875 6677777665 55 8999986 5666665543 2322111111111110 1124588888532
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
. ....+....+.|+++|++++....
T Consensus 247 g---------------------~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 247 G---------------------VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred C---------------------CHHHHHHHHHHccCCcEEEEEecC
Confidence 1 123677788999999998876543
No 302
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.068 Score=44.17 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=37.3
Q ss_pred CcEEEecCCCChhhHHHHhc----C-----CCeEEEEECCHHHHHHHHHHHhhc
Q 028957 2 TSVLELGCGNSRLSEGLYND----G-----ITAITCIDLSAVAVEKMQERLLLK 46 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~----~-----~~~v~~vD~~~~~~~~~~~~~~~~ 46 (201)
..++|+|+|+|.++..+++. . ..++..+++|++..+.-+++++..
T Consensus 79 ~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 79 LKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred ceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 36999999999999998764 1 229999999999998888887654
No 303
>PRK13699 putative methylase; Provisional
Probab=94.87 E-value=0.053 Score=42.27 Aligned_cols=56 Identities=21% Similarity=0.401 Sum_probs=38.3
Q ss_pred EEEEcccCCC--CCCCCceeEEEeccccceeeecCCCCCCCC-----------CccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 52 KVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQ-----------PETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 52 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
+++.+|+.+. .++++++|+|+. ++||+.. ....+-....+.+++++|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiT-----------DPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILT-----------DPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEe-----------CCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5677887653 477899999996 3455310 011123468899999999999988753
No 304
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.84 E-value=0.022 Score=38.75 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=26.1
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECCH
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLSA 33 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~ 33 (201)
...|+|||+|.+...+.+.|+ .=.|+|...
T Consensus 61 ~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 61 GFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred ceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 578999999999999999988 788999744
No 305
>PRK11524 putative methyltransferase; Provisional
Probab=94.78 E-value=0.061 Score=43.33 Aligned_cols=69 Identities=16% Similarity=0.352 Sum_probs=41.1
Q ss_pred ceEEEEcccCCC--CCCCCceeEEEeccccce--eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 50 EVKVLEADMLDL--PFSNDCFDVVIEKATMEV--LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 50 ~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+..++++|+.+. .++++++|+|+++-.+.. -+.+..+.|. ..+...-...++.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWK-EDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCccccccccccccccc-HHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 457888888763 366789999998433211 0000000110 00111224678999999999999998753
No 306
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.71 E-value=0.028 Score=44.84 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=32.2
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHH
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVE 37 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~ 37 (201)
|++|||+|||+|.........+...+...|.+.+.++
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred CceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 6899999999999999888877558999999988773
No 307
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.68 E-value=0.056 Score=44.28 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=49.2
Q ss_pred EEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCC-CCCceeEEEec
Q 028957 4 VLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPF-SNDCFDVVIEK 74 (201)
Q Consensus 4 vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~ 74 (201)
|+|+.||.|.++.-+.+.|...+.++|+++.+++..+.++.. .++.+|+.++.. ....+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999999999888886788899999999988887642 334567666531 12357888854
No 308
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.63 E-value=0.26 Score=40.56 Aligned_cols=92 Identities=11% Similarity=0.119 Sum_probs=56.1
Q ss_pred CCcEEEecCCC-ChhhHHHHhc--CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND--GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
|++||-+|||. |.++..+++. +..+|+++|.+++.++.+++ + + ....+ .+.. ....+|+|+-...-
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~--~~~~~-~~~~----~~~g~d~viD~~G~ 232 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D--ETYLI-DDIP----EDLAVDHAFECVGG 232 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C--ceeeh-hhhh----hccCCcEEEECCCC
Confidence 46899999876 5566666653 34489999999888777754 1 1 11111 1111 11247888842110
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
......+....+.|+++|++++....
T Consensus 233 ------------------~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 233 ------------------RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred ------------------CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 00235677888999999999877643
No 309
>PTZ00357 methyltransferase; Provisional
Probab=94.44 E-value=0.2 Score=45.06 Aligned_cols=96 Identities=22% Similarity=0.273 Sum_probs=59.0
Q ss_pred cEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHH---hhcC------CCceEEEEcccCCCCCCC---
Q 028957 3 SVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERL---LLKG------YKEVKVLEADMLDLPFSN--- 65 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~---~~~~------~~~i~~~~~d~~~~~~~~--- 65 (201)
.|+-+|+|-|-+....++. +.+ +++++|-++........+. ..+. -..|+++..|++....+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 4899999999887776654 444 9999999966443333332 2221 124899999999864321
Q ss_pred --------CceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccC
Q 028957 66 --------DCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKP 111 (201)
Q Consensus 66 --------~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 111 (201)
+++|++|+= ++.+|++ -+-....|..+.+.||+
T Consensus 783 s~~~P~~~gKaDIVVSE-----LLGSFGD--------NELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE-----LLGSLGD--------NELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccceehHh-----hhccccc--------ccCCHHHHHHHHHhhhh
Confidence 368999862 1222222 12334566666666665
No 310
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.24 E-value=0.13 Score=42.44 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=52.0
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEec
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIEK 74 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~ 74 (201)
.+++|+.||.|.+..-+...|+.-+.++|+++..++.-+.+... ..++..|..... +....+|+++..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeC
Confidence 47999999999999999999988999999999999988887643 345666665432 111167888853
No 311
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.14 E-value=0.11 Score=42.27 Aligned_cols=109 Identities=20% Similarity=0.262 Sum_probs=75.2
Q ss_pred CcEEEecCCCChhhHHHHhcC--------------------CC-eEEEEECC--HHHHHHHHHHHhhc------------
Q 028957 2 TSVLELGCGNSRLSEGLYNDG--------------------IT-AITCIDLS--AVAVEKMQERLLLK------------ 46 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~--------------------~~-~v~~vD~~--~~~~~~~~~~~~~~------------ 46 (201)
.+||-||.|.|.-...++... .. .++++|+. ..++......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 589999999986555554321 11 79999985 55666666654433
Q ss_pred -----CCCceEEEEcccCCCCCC-------CCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcE
Q 028957 47 -----GYKEVKVLEADMLDLPFS-------NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGL 114 (201)
Q Consensus 47 -----~~~~i~~~~~d~~~~~~~-------~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 114 (201)
..-++.|.+.|+..+..+ ....++|...+.++.+|.. +.....+++.++-..++||..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~----------s~~kTt~FLl~Lt~~~~~Gsl 237 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST----------SISKTTKFLLRLTDICPPGSL 237 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc----------ChHHHHHHHHHHHhhcCCCcE
Confidence 112478899998876421 1246888777777777643 456778999999999999988
Q ss_pred EEEEec
Q 028957 115 FISVSF 120 (201)
Q Consensus 115 l~~~~~ 120 (201)
+++++.
T Consensus 238 LLVvDS 243 (315)
T PF11312_consen 238 LLVVDS 243 (315)
T ss_pred EEEEcC
Confidence 887764
No 312
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.07 E-value=0.29 Score=37.05 Aligned_cols=101 Identities=12% Similarity=0.161 Sum_probs=64.3
Q ss_pred CCcEEEecCCCChhhHHHHhc----CCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC------CCCCcee
Q 028957 1 MTSVLELGCGNSRLSEGLYND----GIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------FSNDCFD 69 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~----~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D 69 (201)
++.|+|.|.-.|+-+...|+. |-. +|+++|++-.....+... .++|.+++++-.+.. ...+.+-
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y~ 144 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEYP 144 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCCC
Confidence 568999999988877776654 422 999999986554333221 468999999865532 1112222
Q ss_pred EE-EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 70 VV-IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 70 ~v-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
-| +|-..- ++.+...+-++.+.++|..|-++++.+..
T Consensus 145 kIfvilDsd---------------Hs~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 145 KIFVILDSD---------------HSMEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred cEEEEecCC---------------chHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 33 331122 23466677778888899998888876544
No 313
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.98 E-value=0.52 Score=34.90 Aligned_cols=113 Identities=20% Similarity=0.169 Sum_probs=61.7
Q ss_pred ecCCCChhhHHHHhc-C-CCeEEEEECCHH--HHHH---HHHHHhhcCCCceEE-EEcccCCCC----CCCCceeEEEec
Q 028957 7 LGCGNSRLSEGLYND-G-ITAITCIDLSAV--AVEK---MQERLLLKGYKEVKV-LEADMLDLP----FSNDCFDVVIEK 74 (201)
Q Consensus 7 lG~G~G~~~~~l~~~-~-~~~v~~vD~~~~--~~~~---~~~~~~~~~~~~i~~-~~~d~~~~~----~~~~~~D~v~~~ 74 (201)
+|=|.-.++..+++. + ...++++-++.. ..+. +..++.......+.+ ...|+.++. ...+.||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 566666777777776 3 337777766533 2221 223333322123333 556666654 246789999965
Q ss_pred cccceeeecCCCCCC--CCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 75 ATMEVLFVNSGDPWN--PQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
+.--.- +.-.. ....+..-+..+++.+.++|+++|.+.+.-...+
T Consensus 83 FPH~G~----~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 83 FPHVGG----GSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred CCCCCC----CccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 432110 00000 0001223467889999999999999887755543
No 314
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.98 E-value=0.21 Score=43.18 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=43.2
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 61 (201)
-+++|+.||.|+++.-+-..|...|.++|+++.+.+.-+.|+... +....+..|+.++
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i 146 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDI 146 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhC
Confidence 379999999999999998888878899999999888887775211 1223344555543
No 315
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.95 E-value=0.29 Score=40.99 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=63.0
Q ss_pred CCcEEEecCCC-ChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc-cCC-C-C-CCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD-MLD-L-P-FSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~-~-~-~~~~~~D~v~~~ 74 (201)
+.+||..|||. |..+..+++... .++++++.+++..+.+++.. +...+.....+ ... + . .....+|+|+..
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 46799999987 888888887743 36999999999888887642 11111211111 111 1 1 122368988853
Q ss_pred cccceeeecCCCCCCCC----CccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 75 ATMEVLFVNSGDPWNPQ----PETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
..-+.. ..+|-.- +....+....+..+.+.++++|+++....
T Consensus 262 vg~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAH----GSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCccc----ccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 211000 0000000 00001224577888899999999987753
No 316
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.94 E-value=0.2 Score=39.94 Aligned_cols=94 Identities=18% Similarity=0.116 Sum_probs=55.3
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEE-cc-cCCCCCCCCceeEEEecc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLE-AD-MLDLPFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~-~d-~~~~~~~~~~~D~v~~~~ 75 (201)
+++||-.|+|+ |..+..+++. |...|+++|.+++..+.+++. +...+ .... .+ +..+ .....+|+++-..
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~-~~~~g~d~vid~~ 195 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATALAEPEVLAERQGGL-QNGRGVDVALEFS 195 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcEecCchhhHHHHHHH-hCCCCCCEEEECC
Confidence 46788888865 6666666665 554599999988877776652 22111 0000 00 0011 1123588888421
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
. ....++...+.|+++|+++....
T Consensus 196 G---------------------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 196 G---------------------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred C---------------------ChHHHHHHHHHhcCCCEEEEecc
Confidence 1 12466777889999999987764
No 317
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.77 E-value=0.82 Score=37.02 Aligned_cols=94 Identities=22% Similarity=0.294 Sum_probs=56.2
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc-ccCC-C-CCCCCceeEEEecc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA-DMLD-L-PFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~~D~v~~~~ 75 (201)
+.+||..|+|. |..+..+++. |. +|++++.+++..+.+++. +...+-.... +... + ....+.+|+++...
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKEL----GADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh----CCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 35778877764 6777777765 54 799999998887777442 2211111000 0000 0 12245689888421
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
. ....++++.+.|+++|+++....
T Consensus 241 g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 G---------------------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred C---------------------CHHHHHHHHHHhhcCCEEEEECC
Confidence 1 13467778899999999987654
No 318
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.68 E-value=0.057 Score=46.24 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=73.0
Q ss_pred CcEEEecCCCChhhHHHHhcCC--CeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCC----CCCCCceeEEEec
Q 028957 2 TSVLELGCGNSRLSEGLYNDGI--TAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDL----PFSNDCFDVVIEK 74 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~----~~~~~~~D~v~~~ 74 (201)
-+|||--|++|.-++..+..-+ ..|++-|.++..++..+++...++.. .+.....|+..+ +-....||+|=.
T Consensus 111 l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL- 189 (525)
T KOG1253|consen 111 LRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL- 189 (525)
T ss_pred chHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec-
Confidence 4688888999998888887733 39999999999999999998887632 355667776543 122467898863
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
||+. ....+|....+.++.||.+.+..
T Consensus 190 -----------DPyG-------s~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 190 -----------DPYG-------SPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred -----------CCCC-------CccHHHHHHHHHhhcCCEEEEEe
Confidence 3332 23468888888899999988753
No 319
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.59 E-value=1.2 Score=30.35 Aligned_cols=88 Identities=22% Similarity=0.233 Sum_probs=55.6
Q ss_pred CCCChhhHHHHhc---CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEeccccceee
Q 028957 9 CGNSRLSEGLYND---GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEKATMEVLF 81 (201)
Q Consensus 9 ~G~G~~~~~l~~~---~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~~~l~~~~ 81 (201)
||.|.++..+++. ....|+.+|.+++.++.+.+. .+.++.+|..+.. ..-.+++.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVILTD----- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEEESS-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEEccC-----
Confidence 5666777777654 223899999999988877653 4678999988632 33457788876321
Q ss_pred ecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 82 VNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
.......+....+.+.|...++.....
T Consensus 72 -------------~d~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 72 -------------DDEENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp -------------SHHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred -------------CHHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 123333444555667788887766543
No 320
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.38 E-value=0.18 Score=41.68 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=55.8
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCC-C-C-CCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L-P-FSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~-~-~-~~~~~~D~v~~~ 74 (201)
|.+||-.|||. |..+..+++. |..+|+++|.+++..+.+++. +.+. +.....+... + . .....+|+|+-.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GATHTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 46788888765 6666666665 443699999999888777542 2211 1111111110 0 0 122358888842
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.. . ...+....+.++++|++++...
T Consensus 253 ~g-----------------~----~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 VG-----------------R----PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CC-----------------C----HHHHHHHHHHhccCCEEEEECC
Confidence 11 0 2355667788999999987654
No 321
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.31 E-value=0.22 Score=43.47 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=30.9
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHH
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQE 41 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~ 41 (201)
+.+|+-+|+|. |..+..++.. |. .|+++|.+++.++.+++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 46899999987 5666656555 55 79999999998777765
No 322
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.23 E-value=0.23 Score=41.77 Aligned_cols=64 Identities=13% Similarity=0.229 Sum_probs=51.8
Q ss_pred CCceEEEEcccCCC--CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCcc
Q 028957 48 YKEVKVLEADMLDL--PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPH 124 (201)
Q Consensus 48 ~~~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 124 (201)
+++++++++++.+. ..+++++|.++....++++ ..+...+.++++.+.++|||++++-+...+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-------------~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-------------DPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-------------CHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 47899999998763 2567899999987766665 3478899999999999999999988776543
No 323
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.92 E-value=0.29 Score=38.20 Aligned_cols=78 Identities=8% Similarity=0.144 Sum_probs=48.7
Q ss_pred CcEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcC-C-CceEEEEcccCC--C---CCCCCceeEEEe
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKG-Y-KEVKVLEADMLD--L---PFSNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~-~-~~i~~~~~d~~~--~---~~~~~~~D~v~~ 73 (201)
.++||+|.|.--+=-.+--+.+. ..+|.|+++..+..|+..+..+. + ..|+.....-.+ + --..+.||+++|
T Consensus 80 i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlC 159 (292)
T COG3129 80 IRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLC 159 (292)
T ss_pred eEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEec
Confidence 46889987753222112222233 89999999999999999887762 2 224443322111 1 123578999999
Q ss_pred ccccce
Q 028957 74 KATMEV 79 (201)
Q Consensus 74 ~~~l~~ 79 (201)
+-.||.
T Consensus 160 NPPFh~ 165 (292)
T COG3129 160 NPPFHD 165 (292)
T ss_pred CCCcch
Confidence 988874
No 324
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=92.89 E-value=0.097 Score=44.13 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=49.4
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC-C-ceEEEEcccCC
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY-K-EVKVLEADMLD 60 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~-~-~i~~~~~d~~~ 60 (201)
|..|.|+.||-|-++..++..++ .|++-|+++++++..+.+++-+.+ + ++..+.+|+..
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 250 GEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred cchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 45788999999999999999987 999999999999999999877663 2 26777777653
No 325
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.85 E-value=1.5 Score=35.96 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=53.8
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|.+||-.|+|. |..+..+++. |. ++++++.+++..+.+++. +...+ + |..+. ..+.+|+++....
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~----Ga~~v--i--~~~~~--~~~~~d~~i~~~~-- 232 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALAL----GAASA--G--GAYDT--PPEPLDAAILFAP-- 232 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHh----CCcee--c--ccccc--CcccceEEEECCC--
Confidence 46788888754 5555566655 54 799999998877776552 32211 1 11111 1235787653111
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
....+....+.|+++|++++...
T Consensus 233 -------------------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 -------------------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -------------------cHHHHHHHHHhhCCCcEEEEEec
Confidence 12367778899999999987664
No 326
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.72 E-value=0.22 Score=42.74 Aligned_cols=112 Identities=24% Similarity=0.259 Sum_probs=71.5
Q ss_pred CcEEEecCCCChhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-------CCCCCceeEEEe
Q 028957 2 TSVLELGCGNSRLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-------PFSNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~~D~v~~ 73 (201)
..+|-+|-|+|.+...+....+ ..++++++++.+++.+.+.+.-..-.+..+.-.|.... .-.+..||+++.
T Consensus 297 ~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~ 376 (482)
T KOG2352|consen 297 GKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMV 376 (482)
T ss_pred CcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEE
Confidence 4678888888988887766544 39999999999999999886433212334444443221 123567899884
Q ss_pred ccccceeeecCCCCCC-CCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 74 KATMEVLFVNSGDPWN-PQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.- |+.+++. .-|-..--...++..+...|.|.|.+++.-.
T Consensus 377 dv-------ds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 377 DV-------DSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred EC-------CCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence 21 1111111 1122223357889999999999999987543
No 327
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.59 E-value=0.24 Score=41.36 Aligned_cols=40 Identities=28% Similarity=0.286 Sum_probs=32.0
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHH
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQE 41 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~ 41 (201)
+.++|+|+|.|+++..++-...-.|.+||-+....+.+++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4789999999999998865533399999999777666654
No 328
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.58 E-value=0.54 Score=36.55 Aligned_cols=94 Identities=27% Similarity=0.278 Sum_probs=55.4
Q ss_pred CCcEEEecCCC-ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----CCCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----PFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~v~~~ 74 (201)
+.+||..|+|+ |..+..+++....++++++.+++..+.+++. +.. .++...-... ....+.+|+++..
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD--HVIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc--eeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 46899999886 5566666665334899999998777666432 111 1111000000 1123568998853
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
..- ...+..+.+.|+++|+++.....
T Consensus 209 ~~~---------------------~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 209 VGG---------------------PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CCC---------------------HHHHHHHHHhcccCCEEEEEccC
Confidence 210 13566677888999998876543
No 329
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=92.55 E-value=1.6 Score=38.16 Aligned_cols=116 Identities=15% Similarity=0.279 Sum_probs=68.2
Q ss_pred CcEEEecCCCChhhHHHHhc---CC--CeEEEEECCHHHHHHHHHHHhhcCC--CceEEEEcccCC-CCC-CCCceeEEE
Q 028957 2 TSVLELGCGNSRLSEGLYND---GI--TAITCIDLSAVAVEKMQERLLLKGY--KEVKVLEADMLD-LPF-SNDCFDVVI 72 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~---~~--~~v~~vD~~~~~~~~~~~~~~~~~~--~~i~~~~~d~~~-~~~-~~~~~D~v~ 72 (201)
..|.|..||+|.+....... +. ..+++.+..+.+...++.++...+. +......+|-.. ... ...+||+|+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~ 298 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV 298 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence 47899999999988765432 21 2799999999999999888654432 122333334222 111 235689998
Q ss_pred eccccceeeecCCCC--------CCC---CCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 73 EKATMEVLFVNSGDP--------WNP---QPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 73 ~~~~l~~~~~~~~~~--------~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
++-.+...+.....| |.. .+. ...-..++..+..+|++||+..++
T Consensus 299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~-~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPN-SKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred ecCCcccccccccccccccccchhcccCCCCC-chhhHHHHHHHHHhcCCCCeEEEE
Confidence 876554311100001 000 011 123357788888999999985554
No 330
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.55 E-value=0.82 Score=38.93 Aligned_cols=87 Identities=11% Similarity=0.222 Sum_probs=54.6
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|++|+-+|+|. |......++. |. +|+.+|.++.....+.. .+. ..+. .... . ...|+|+....
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~---~~~~--~~e~-v--~~aDVVI~atG-- 266 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY---EVMT--MEEA-V--KEGDIFVTTTG-- 266 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC---EEcc--HHHH-H--cCCCEEEECCC--
Confidence 57899999998 6666555554 55 89999999887766654 222 2211 1111 1 24699885321
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHH-HhhcccCCcEEEEEecC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEG-VHRVLKPDGLFISVSFG 121 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~~gG~l~~~~~~ 121 (201)
...++.. ..+.+++||+++.....
T Consensus 267 -------------------~~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 -------------------NKDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -------------------CHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 1234444 47899999998876543
No 331
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.50 E-value=0.38 Score=39.17 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=65.1
Q ss_pred CcEEEecCCC-ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~-G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
.+|.-+|.|. |..+..++.-...+|+.+|+|.+.++.....+.. ++.+..-+...+...-.+.|++|..-.+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLI--- 241 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLI--- 241 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEe---
Confidence 4566777775 6666555554334999999999999888776532 5666665555443334578998853221
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
......+-+.+++.+.||||+.++=+.
T Consensus 242 ------------pgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 242 ------------PGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred ------------cCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 122344667788899999998877443
No 332
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.40 E-value=0.34 Score=40.34 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=55.7
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C-CCCCCceeEEEecc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-PFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~-~~~~~~~D~v~~~~ 75 (201)
|++||-.|+|. |..+..+++. |..+|+++|.+++..+.+++. +...+ .....|... + ....+.+|+|+...
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 46788888765 6666666665 544799999999888777542 22111 111111100 0 01123588888421
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
. ....+....+.|+++|+++....
T Consensus 268 G---------------------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 268 G---------------------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred C---------------------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 1 12456677788999999887654
No 333
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.39 E-value=0.7 Score=32.03 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=55.6
Q ss_pred CChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----C-CCCCceeEEEeccccceeeecC
Q 028957 11 NSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----P-FSNDCFDVVIEKATMEVLFVNS 84 (201)
Q Consensus 11 ~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~ 84 (201)
-|..+..+++....+|+++|.++...+.+++. +. ..++..+-.+. . .+...+|+|+-...
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga--~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-------- 67 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA--DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-------- 67 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE--SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS--------
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc--cccccccccccccccccccccccceEEEEecC--------
Confidence 46777777776336999999999988888753 21 12222221111 1 22357999985321
Q ss_pred CCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 85 GDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
....++....+|+++|+++++....
T Consensus 68 -------------~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 -------------SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -------------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -------------cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1457888899999999999887654
No 334
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.29 E-value=0.46 Score=39.04 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=53.9
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCC--CCCCCcee-EEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDL--PFSNDCFD-VVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~--~~~~~~~D-~v~~~ 74 (201)
|.+||-.|+|+ |..+..+++. |...+++++.+++..+.+++. +...+ .....+...+ ......+| +|+-.
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~ 236 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAMQTFNSREMSAPQIQSVLRELRFDQLILET 236 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCceEecCcccCHHHHHHHhcCCCCCeEEEEC
Confidence 46788888765 5666666665 553588999988877766432 22111 1111110000 01223566 55521
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
. .-...+....+.|+++|++++....
T Consensus 237 -----~----------------G~~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 237 -----A----------------GVPQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred -----C----------------CCHHHHHHHHHHhhcCCEEEEEccC
Confidence 1 0134677788999999998887543
No 335
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.17 E-value=1.8 Score=32.40 Aligned_cols=96 Identities=22% Similarity=0.340 Sum_probs=59.3
Q ss_pred cEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C----------CCceEEEEcccCCCCC
Q 028957 3 SVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLPF 63 (201)
Q Consensus 3 ~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~----------~~~i~~~~~d~~~~~~ 63 (201)
+|--+|+|+ | .++..++..|. +|+.+|.+++.++.+.+.+... + ..+++ ...|+...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 356688876 3 45555566677 9999999999998877765431 1 12333 33444332
Q ss_pred CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
...|+|+-.- ++..+..+++++++.+.+.|+..+...+.
T Consensus 77 --~~adlViEai----------------~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 77 --VDADLVIEAI----------------PEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp --CTESEEEE-S-----------------SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred --hhhheehhhc----------------cccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 2568888531 14567788999999999999887665543
No 336
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.39 E-value=0.69 Score=37.78 Aligned_cols=95 Identities=22% Similarity=0.174 Sum_probs=54.4
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCC-C-CCCCceeEEEecc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDL-P-FSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~-~-~~~~~~D~v~~~~ 75 (201)
|.+||-.|+|. |..+..+++. |..+|++++.+++..+.+++. +...+ .....+...+ . .....+|+|+...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 46788888764 5566666665 553499999998887776542 22111 1111111111 1 1223689988421
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
. ....+....+.|+++|++++...
T Consensus 240 g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 240 G---------------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred C---------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 1 12345666788999999887654
No 337
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=91.38 E-value=0.94 Score=36.92 Aligned_cols=92 Identities=24% Similarity=0.334 Sum_probs=53.6
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc---ccCCCCCCCCceeEEEecc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DMLDLPFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~~D~v~~~~ 75 (201)
+.+||-.|||. |..+..+++. |..++++++.+++..+.+++. +.. .++.. +..........+|+++...
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~--~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD--ETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC--EEEcCCchhhhhhhccCCCccEEEECC
Confidence 45778888765 6666666665 443789999888777755432 211 11111 1111111123488888521
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.. ...++.+.+.|+++|+++...
T Consensus 240 g~---------------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 GA---------------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CC---------------------HHHHHHHHHHHhcCCEEEEEe
Confidence 10 235677789999999988664
No 338
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=90.80 E-value=0.39 Score=37.21 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=43.8
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 61 (201)
+-|+++|.|.|+++..+.+++......++.+...+...+...+... .+..+..+|+...
T Consensus 52 ~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRF 110 (326)
T ss_pred ceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEecccccee
Confidence 3588999999999999999988788889988877766655433222 2566677776543
No 339
>PLN02740 Alcohol dehydrogenase-like
Probab=90.70 E-value=1.8 Score=36.21 Aligned_cols=95 Identities=18% Similarity=0.224 Sum_probs=55.1
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEc--ccCC-C-CCCCCceeEEEe
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEA--DMLD-L-PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~--d~~~-~-~~~~~~~D~v~~ 73 (201)
|++||-+|+|. |..+..+++. |..+|+++|.+++.++.+++ .+.+. +..... +... + ....+.+|+|+-
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid 274 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMTGGGVDYSFE 274 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 46788898865 6666666665 44379999999988887754 23211 111110 1110 0 111226898885
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF 120 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 120 (201)
... ....+......++++ |++++...
T Consensus 275 ~~G---------------------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 275 CAG---------------------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCC---------------------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 221 123566666788886 99877654
No 340
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=90.14 E-value=6.2 Score=31.38 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=64.0
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECC-HHHHHHHHHHHhhcC---CCceEEEEcccCCC--------CCCCCceeE
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKG---YKEVKVLEADMLDL--------PFSNDCFDV 70 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~-~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~--------~~~~~~~D~ 70 (201)
.|+.||||-=.-...+. ....+..+|++ +++++.-++.+...+ ..+..++..|+... .+.....=+
T Consensus 84 qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 84 QVVILGAGLDTRAYRLP--WPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred EEEEeCCccccHHHhcC--CCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 58999998644443332 12135556665 556666666665432 24678888887621 122223345
Q ss_pred EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
+++-+++.++ ..+...++++.+.+...||+.+++-...
T Consensus 162 ~i~EGvl~YL-------------~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 162 WLWEGLLMYL-------------TEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eeecchhhcC-------------CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 5665666554 4577889999999988899888865443
No 341
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.11 E-value=2.8 Score=33.77 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=57.7
Q ss_pred cEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C-C---------CceEEEEcccCCCCC
Q 028957 3 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDLPF 63 (201)
Q Consensus 3 ~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~-~---------~~i~~~~~d~~~~~~ 63 (201)
+|--+|+|+ +.++..++..|. .|+..|.+++.++.+.+++... + . .+++ ...|...
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~--- 81 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD--- 81 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH---
Confidence 567788885 345555666677 9999999999988866653221 1 0 1111 1223211
Q ss_pred CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcc-cCCcEEEEEe
Q 028957 64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVL-KPDGLFISVS 119 (201)
Q Consensus 64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~~~~ 119 (201)
....|+|+-. + ++..+....++..+-+.+ +|+..+.-.+
T Consensus 82 -~~~~d~ViEa-----v-----------~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 82 -FADRQLVIEA-----V-----------VEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred -hCCCCEEEEe-----c-----------ccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1345888853 1 144566678888888888 6766555433
No 342
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=89.99 E-value=1.3 Score=36.73 Aligned_cols=93 Identities=17% Similarity=0.236 Sum_probs=50.6
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE-cccCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~~~~~l 77 (201)
|++||-.|+|. |..+..+++. |. ++++++.+.+....+.+ ..+... ++. .+...+....+.+|+|+-...
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~---~~Ga~~--vi~~~~~~~~~~~~~~~D~vid~~g- 256 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN---RLGADS--FLVSTDPEKMKAAIGTMDYIIDTVS- 256 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH---hCCCcE--EEcCCCHHHHHhhcCCCCEEEECCC-
Confidence 45788888865 6666666665 44 78888877654332221 122211 111 110011000124788874211
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
....++...+.|+++|+++....
T Consensus 257 --------------------~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 --------------------AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --------------------CHHHHHHHHHHhcCCcEEEEeCC
Confidence 12356777889999999887653
No 343
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=89.89 E-value=1.2 Score=35.16 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=59.3
Q ss_pred CcEEEecCCCChhhHHHHh---c-C-CC-eEEEEECC--------------------------HHHHHHHHHHHhhcCC-
Q 028957 2 TSVLELGCGNSRLSEGLYN---D-G-IT-AITCIDLS--------------------------AVAVEKMQERLLLKGY- 48 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~---~-~-~~-~v~~vD~~--------------------------~~~~~~~~~~~~~~~~- 48 (201)
.-|+|+||-.|..+..++. . + .. ++++.|.= ....+..++++...+.
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~ 155 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL 155 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence 4589999999986655432 1 2 22 78888821 1134444555544442
Q ss_pred -CceEEEEcccCC-CC-CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 49 -KEVKVLEADMLD-LP-FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 49 -~~i~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
+++.++.+...+ ++ .+..++-++.. |.+ -.+.....|+.++..|.|||.+++-++..
T Consensus 156 ~~~v~~vkG~F~dTLp~~p~~~IAll~l---------D~D--------lYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 156 DDNVRFVKGWFPDTLPDAPIERIALLHL---------DCD--------LYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp STTEEEEES-HHHHCCC-TT--EEEEEE--------------------SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cccEEEECCcchhhhccCCCccEEEEEE---------ecc--------chHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 578999998764 33 22233322221 111 12557889999999999999999887765
No 344
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.86 E-value=2.5 Score=36.19 Aligned_cols=88 Identities=10% Similarity=0.218 Sum_probs=51.1
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|++|+-+|+|. |......++. |. +|+.+|.++.....+.. .+. .+. ++... ....|+|+....
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~---~v~--~l~ea---l~~aDVVI~aTG-- 276 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF---RVM--TMEEA---AELGDIFVTATG-- 276 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC---Eec--CHHHH---HhCCCEEEECCC--
Confidence 57889999986 4444444443 55 89999998865433322 121 211 22211 135799886311
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHH-HHhhcccCCcEEEEEecCC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~~ 122 (201)
...++. .....+|+|+.++......
T Consensus 277 -------------------~~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 277 -------------------NKDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred -------------------CHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 123444 6778899999888765443
No 345
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.66 E-value=0.65 Score=36.97 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=37.9
Q ss_pred CcEEEecCCCChhhHHHHhcC-----CC-eEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCC
Q 028957 2 TSVLELGCGNSRLSEGLYNDG-----IT-AITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP 62 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~-----~~-~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~ 62 (201)
..++|+|||.|.++..++... .. .++.||-.....+.-. ...... .+.+.-+..|+.++.
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCCCceEEEEEEeeccc
Confidence 358999999999999998764 22 8999998654443222 222221 124555666666543
No 346
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=89.57 E-value=0.27 Score=43.48 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=58.2
Q ss_pred CcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------CCCCceeEE
Q 028957 2 TSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------FSNDCFDVV 71 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~D~v 71 (201)
..||||||.+|++.+-.++..+. -|+|+|+-+- ..++++..++.|+.... ...-+.|+|
T Consensus 46 ~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~advV 114 (780)
T KOG1098|consen 46 HVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNCDTLVEDITTDECRSKLRKILKTWKADVV 114 (780)
T ss_pred chheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEE
Confidence 57999999999999988876332 8999998542 12344444445544311 122345777
Q ss_pred EeccccceeeecCCCCCCCCCccHH-HHHHHHHHHhhcccCCcEEEEEec
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVT-KVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+..++-. -+.-|........ -....+.-....|+.||.++--.+
T Consensus 115 LhDgapn-----Vg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf 159 (780)
T KOG1098|consen 115 LHDGAPN-----VGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVF 159 (780)
T ss_pred eecCCCc-----cchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccc
Confidence 7433211 1223421111111 123556667788999999664333
No 347
>PLN02827 Alcohol dehydrogenase-like
Probab=89.54 E-value=2.7 Score=35.16 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=54.1
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEE--cccCC-C-CCCCCceeEEEe
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLE--ADMLD-L-PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~--~d~~~-~-~~~~~~~D~v~~ 73 (201)
|.+||-.|+|. |.++..+++. |...++++|.+++..+.+++ .+.+.+ .... .+... + ....+.+|+|+-
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 46788888765 6666666665 55468899988887776644 232111 1111 01111 0 011235888884
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF 120 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 120 (201)
... ....+....+.+++| |++++...
T Consensus 270 ~~G---------------------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 270 CVG---------------------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCC---------------------ChHHHHHHHHhhccCCCEEEEECC
Confidence 211 123456677888998 99887654
No 348
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.32 E-value=5 Score=32.64 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=57.5
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHH--HhhcCCCceEEEEcccCCCCCCCCceeEEEecccc
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER--LLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~--~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
++|+=+|+|. |.++..|++.|. .|+.++-+.+.++..++. +.-............... +.....+|+|+..-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~v-- 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLAC-- 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCC-cccccccCEEEEEC--
Confidence 5788999996 456666666666 899999877666555432 100000010111111111 11235789887521
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
..-+...+++.+...+.++..++.....
T Consensus 79 ----------------K~~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 79 ----------------KAYDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred ----------------CHHhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 1124567888999999999887766544
No 349
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.17 E-value=2.7 Score=33.77 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=29.5
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHH
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER 42 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~ 42 (201)
++|.-+|+|. +.++..++..|. +|+.+|.+++.++.+.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~ 43 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQE 43 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Confidence 4677788875 345555566676 899999999999887654
No 350
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.02 E-value=2.5 Score=37.92 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=56.0
Q ss_pred cEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEec
Q 028957 3 SVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIEK 74 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~ 74 (201)
+|+=+| .|.++..+++ .+. +++.+|.+++.++.+++. ...++.+|+.+.. ..-.+.|++++.
T Consensus 402 ~vII~G--~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 402 QVIIVG--FGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-------GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CEEEec--CchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-------CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 444454 4555555544 344 899999999998887642 4578999988742 233467877752
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCc
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQP 123 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 123 (201)
.. +.+.-..+ -...+.+.|..+++....+..
T Consensus 472 ~~-----------------d~~~n~~i-~~~~r~~~p~~~IiaRa~~~~ 502 (601)
T PRK03659 472 CN-----------------EPEDTMKI-VELCQQHFPHLHILARARGRV 502 (601)
T ss_pred eC-----------------CHHHHHHH-HHHHHHHCCCCeEEEEeCCHH
Confidence 11 11222233 333455678888887665443
No 351
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.97 E-value=1.9 Score=36.35 Aligned_cols=69 Identities=25% Similarity=0.327 Sum_probs=47.1
Q ss_pred CCcEEEecCCC-ChhhHHH-HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---CCCCceeEEEe
Q 028957 1 MTSVLELGCGN-SRLSEGL-YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---FSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l-~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~ 73 (201)
.++||-+|||. |...... ++.+-.+|+..|-+.+.+..+..... .+++..+.|+.+.+ ---..+|+|+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEE
Confidence 36899999975 5444444 44453499999999988877765432 27888999988753 01134588885
No 352
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.77 E-value=4.6 Score=33.09 Aligned_cols=95 Identities=21% Similarity=0.270 Sum_probs=54.5
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C-C-CCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-P-FSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~-~-~~~~~~D~v~~~ 74 (201)
|.+||-.|+|. |..+..+++. |...+++++.+++..+.+++ .+.+.+ .....+... + . .....+|+++..
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~ 242 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDAVIIA 242 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcEEEEC
Confidence 45778887764 5566666665 45479999998877766654 222111 111111100 0 1 122458988842
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.. -...+..+.+.|+++|+++....
T Consensus 243 ~g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 243 GG---------------------GQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CC---------------------CHHHHHHHHHHhhcCCEEEEecc
Confidence 11 02466788888999999886543
No 353
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=88.54 E-value=3.6 Score=34.82 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=31.0
Q ss_pred CCcEEEec-CCC-ChhhHHHHhc---CCCeEEEEECCHHHHHHHHHH
Q 028957 1 MTSVLELG-CGN-SRLSEGLYND---GITAITCIDLSAVAVEKMQER 42 (201)
Q Consensus 1 ~~~vLDlG-~G~-G~~~~~l~~~---~~~~v~~vD~~~~~~~~~~~~ 42 (201)
|.+|+-+| +|. |..+..+++. +..+|+++|.+++.++.+++.
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 35788886 454 7777777776 233799999999998888764
No 354
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.29 E-value=3.9 Score=36.82 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=42.4
Q ss_pred CcEEEecCCC-ChhhHHH-HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957 2 TSVLELGCGN-SRLSEGL-YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~-G~~~~~l-~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~ 73 (201)
.+|+=+|||. |...... .+.+. +++.+|.+++.++.+++. ...++.+|+.+.. ..-...|++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-------CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 3567777765 4433332 23355 899999999999888652 4578999988742 23346787775
No 355
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.11 E-value=2.6 Score=34.81 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=56.0
Q ss_pred CCcEEEecC-C-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEc-ccCC-C-CCCCCceeEEEe
Q 028957 1 MTSVLELGC-G-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA-DMLD-L-PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~-G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~-d~~~-~-~~~~~~~D~v~~ 73 (201)
|++||-.|+ | .|..+..+++. |. +|++++.+++..+.+++.+ +...+ ..... +... + ....+.+|+++.
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvD~v~d 234 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKL---GFDEAFNYKEEPDLDAALKRYFPEGIDIYFD 234 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhc---CCCEEEECCCcccHHHHHHHHCCCCcEEEEE
Confidence 467888887 3 47777777776 54 8999998888776665322 22111 11111 1111 0 111245888884
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.. . ...+....+.|+++|+++++..
T Consensus 235 ~v--------------------G--~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 235 NV--------------------G--GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CC--------------------C--HHHHHHHHHHhccCCEEEEECc
Confidence 21 1 1366778889999999887653
No 356
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.60 E-value=5.5 Score=33.60 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=57.1
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE-cccCC-C-C-CCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLD-L-P-FSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~-~-~-~~~~~~D~v~~~ 74 (201)
|++||-.|+|. |..+..+++. |...++.+|.+++.++.+++. +...+.... .+... + . .....+|+++-.
T Consensus 186 g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~ 261 (393)
T TIGR02819 186 GSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCETVDLSKDATLPEQIEQILGEPEVDCAVDC 261 (393)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCeEEecCCcccHHHHHHHHcCCCCCcEEEEC
Confidence 45677777765 5666666665 554567778888777777652 321111100 11110 1 0 122358988843
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
..... .+|..+. ........++...++++++|++++....
T Consensus 262 ~G~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 262 VGFEA------RGHGHDG-KKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCCcc------ccccccc-cccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 22100 0000000 0011234788888999999999987653
No 357
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=87.51 E-value=1.6 Score=35.03 Aligned_cols=45 Identities=22% Similarity=0.113 Sum_probs=39.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK 46 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~ 46 (201)
++.|||.-+|+|..+....+.+. .++++|++++.++.+.+++...
T Consensus 223 ~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 223 GDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 57899999999999988877776 8999999999999999987654
No 358
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.41 E-value=2.2 Score=34.11 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=45.9
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEec
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 74 (201)
|+...|+|+-+|+++..+.+++- .|+++|..+- .+.. -. ...++....|.++........|-.+|.
T Consensus 212 ~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~m-a~sL----~d--tg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 212 GMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPM-AQSL----MD--TGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred CceeeecccCCCccchhhhhcce-EEEEeccchh-hhhh----hc--ccceeeeeccCcccccCCCCCceEEee
Confidence 45678999999999999999877 8999997542 2211 11 236677777777654444566766664
No 359
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.23 E-value=2.6 Score=33.86 Aligned_cols=94 Identities=24% Similarity=0.284 Sum_probs=54.5
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc--------CC----------CceEEEEcccCCC
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK--------GY----------KEVKVLEADMLDL 61 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~--------~~----------~~i~~~~~d~~~~ 61 (201)
.+|--+|+|. +.++..++..|. +|+.+|.+++.++.+++..... .. .++. ...|....
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHH
Confidence 3577788875 234444455566 8999999999888777653211 00 1222 12232211
Q ss_pred CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 62 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 62 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
-...|+|+..-. +..+....+++++.+.++++..+.
T Consensus 82 ---~~~aDlVieavp----------------e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 ---VKDADLVIEAVP----------------EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred ---hcCCCEEEEecc----------------CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 134588885311 233456788888888887766543
No 360
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.22 E-value=3.2 Score=33.65 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=54.0
Q ss_pred CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957 1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC 67 (201)
Q Consensus 1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 67 (201)
|..||==|+|+| .++.++++++. +++..|++++..+...+..+..| ++.....|+.+.. -.-+.
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 456676777776 35666677777 89999999988888887777655 6788888887632 22467
Q ss_pred eeEEEecccc
Q 028957 68 FDVVIEKATM 77 (201)
Q Consensus 68 ~D~v~~~~~l 77 (201)
.|+++.+...
T Consensus 115 V~ILVNNAGI 124 (300)
T KOG1201|consen 115 VDILVNNAGI 124 (300)
T ss_pred ceEEEecccc
Confidence 8999987554
No 361
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.85 E-value=6.8 Score=35.95 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=62.6
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C----------CCceEEEEcccCCCC
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLP 62 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~----------~~~i~~~~~d~~~~~ 62 (201)
.+|--||+|+ ..++..++..|. .|+.+|.+++.++.+.+++... + ..++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 4678899998 345555667777 9999999999988776654221 1 1123222 22211
Q ss_pred CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
-...|+|+-. + ++..+-.+++++++-+.++|+..+.-.+.
T Consensus 390 --~~~aDlViEa-----v-----------~E~l~~K~~vf~~l~~~~~~~~ilasNTS 429 (715)
T PRK11730 390 --FERVDVVVEA-----V-----------VENPKVKAAVLAEVEQKVREDTILASNTS 429 (715)
T ss_pred --hcCCCEEEec-----c-----------cCcHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 1356888842 1 15567788999999999999876654443
No 362
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.81 E-value=5.8 Score=36.38 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=62.1
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C----------CCceEEEEcccCCCC
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDLP 62 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~----------~~~i~~~~~d~~~~~ 62 (201)
++|--+|+|+ +.++..++..|. .|+.+|.+++.++.+.++.... + ..+++.. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG-- 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 3677889987 355555667777 9999999999988776654321 1 0122221 12211
Q ss_pred CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
-...|+|+-.- + +..+-.++++.++-++++|+..|.-.+
T Consensus 390 --~~~aDlViEav-~---------------E~l~~K~~vf~~l~~~~~~~~ilasnT 428 (714)
T TIGR02437 390 --FDNVDIVVEAV-V---------------ENPKVKAAVLAEVEQHVREDAILASNT 428 (714)
T ss_pred --hcCCCEEEEcC-c---------------ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 23568888531 1 455778899999999999987765443
No 363
>PRK08265 short chain dehydrogenase; Provisional
Probab=86.76 E-value=10 Score=29.61 Aligned_cols=69 Identities=14% Similarity=0.273 Sum_probs=41.7
Q ss_pred CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957 2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC 67 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~ 67 (201)
+++|-.|++ |.++..+ ++.|. +|+.++.+.+..+...+.. + .++.++..|+.+.. + ..+.
T Consensus 7 k~vlItGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 7 KVAIVTGGA-TLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 566767654 4444444 44466 8999999876555444332 2 25778888987632 0 1245
Q ss_pred eeEEEeccc
Q 028957 68 FDVVIEKAT 76 (201)
Q Consensus 68 ~D~v~~~~~ 76 (201)
.|+++.+..
T Consensus 81 id~lv~~ag 89 (261)
T PRK08265 81 VDILVNLAC 89 (261)
T ss_pred CCEEEECCC
Confidence 788886543
No 364
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.74 E-value=4 Score=33.80 Aligned_cols=94 Identities=23% Similarity=0.287 Sum_probs=50.6
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|.+|+-.|+|. |..+..+++. |. ++++++.+++....+.+. .+...+ +...+...+......+|+++-...
T Consensus 181 g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~---~Ga~~~-i~~~~~~~~~~~~~~~D~vid~~g-- 253 (357)
T PLN02514 181 GLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEH---LGADDY-LVSSDAAEMQEAADSLDYIIDTVP-- 253 (357)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh---cCCcEE-ecCCChHHHHHhcCCCcEEEECCC--
Confidence 45677777654 6666666665 44 788888777655444332 232111 111110011000124788774211
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
....++...+.|+++|+++....
T Consensus 254 -------------------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 -------------------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred -------------------chHHHHHHHHHhccCCEEEEECC
Confidence 12356667788999999887654
No 365
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.54 E-value=7.7 Score=31.34 Aligned_cols=93 Identities=24% Similarity=0.249 Sum_probs=53.5
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC----CCCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL----PFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~v~~~ 74 (201)
+.+||-.|+|. |..+..+++. |...+++++.+++..+.+++. +.. .++..+-... ....+.+|+++..
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT--ETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe--EEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 45788887653 5555555555 443488899888877766432 211 1221111110 1123568998852
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.. ....+....+.|+++|+++....
T Consensus 234 ~~---------------------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 234 TG---------------------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CC---------------------ChHHHHHHHHHHhcCCEEEEEec
Confidence 11 12466777888999999887654
No 366
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.43 E-value=6.3 Score=32.47 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=55.6
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh-------cCC------CceEEEEcccCCCCCCCC
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KGY------KEVKVLEADMLDLPFSND 66 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~-------~~~------~~i~~~~~d~~~~~~~~~ 66 (201)
++|--+|+|+ ..++..++..|. .|+..|.+++.++.+...+.. .+. .++.+. .+... .-.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---av~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---CVA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---Hhc
Confidence 4677888885 345555667777 999999999887766554321 110 112211 11111 013
Q ss_pred ceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCc
Q 028957 67 CFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDG 113 (201)
Q Consensus 67 ~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG 113 (201)
..|+|+-.- ++..+-...+++++.+.++|+.
T Consensus 83 ~aDlViEav----------------pE~l~vK~~lf~~l~~~~~~~a 113 (321)
T PRK07066 83 DADFIQESA----------------PEREALKLELHERISRAAKPDA 113 (321)
T ss_pred CCCEEEECC----------------cCCHHHHHHHHHHHHHhCCCCe
Confidence 458888532 1455667789999999999876
No 367
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.40 E-value=14 Score=28.89 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=42.5
Q ss_pred CCcEEEecCCCC-hhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCC
Q 028957 1 MTSVLELGCGNS-RLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN 65 (201)
Q Consensus 1 ~~~vLDlG~G~G-~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 65 (201)
|+++|-.|+++| .++..++ +.|. +|+.++.+....+.+++..... +...++..|+.+.. -..
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHHHHc
Confidence 467888887762 5555444 4466 7888888755433333322221 23456778876532 112
Q ss_pred CceeEEEecccc
Q 028957 66 DCFDVVIEKATM 77 (201)
Q Consensus 66 ~~~D~v~~~~~l 77 (201)
+..|+++.+..+
T Consensus 87 g~ld~lv~nAg~ 98 (258)
T PRK07533 87 GRLDFLLHSIAF 98 (258)
T ss_pred CCCCEEEEcCcc
Confidence 568998876543
No 368
>PRK08324 short chain dehydrogenase; Validated
Probab=86.31 E-value=7.7 Score=35.31 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=44.7
Q ss_pred CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957 1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 66 (201)
|++||-.|++ |.++..++ ..|. +|+++|.++...+.+.+.+... .++.++..|+.+.. + ..+
T Consensus 422 gk~vLVTGas-ggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 422 GKVALVTGAA-GGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3567777653 44444443 3466 8999999988776665544332 36778888876532 1 123
Q ss_pred ceeEEEeccc
Q 028957 67 CFDVVIEKAT 76 (201)
Q Consensus 67 ~~D~v~~~~~ 76 (201)
.+|+|+.+..
T Consensus 498 ~iDvvI~~AG 507 (681)
T PRK08324 498 GVDIVVSNAG 507 (681)
T ss_pred CCCEEEECCC
Confidence 6798886544
No 369
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.28 E-value=16 Score=29.51 Aligned_cols=78 Identities=24% Similarity=0.257 Sum_probs=51.8
Q ss_pred CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccCCCC----------CCCC
Q 028957 1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADMLDLP----------FSND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~----------~~~~ 66 (201)
|+.|+==||-+| .++..++++|. +++.+-...+.++...+.+...+.. ++.++++|+.+.. ..-+
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 355666677666 34555566676 6666777777777775555544433 4889999998753 2346
Q ss_pred ceeEEEeccccce
Q 028957 67 CFDVVIEKATMEV 79 (201)
Q Consensus 67 ~~D~v~~~~~l~~ 79 (201)
..|+.+.|..+..
T Consensus 91 ~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 91 RVDVLVNNAGISL 103 (282)
T ss_pred CCCEEEecCcccc
Confidence 7899998877654
No 370
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.25 E-value=3.1 Score=32.30 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCcEEEecCCCChhhHHHHhc----CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC-----------CCCC
Q 028957 1 MTSVLELGCGNSRLSEGLYND----GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL-----------PFSN 65 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~----~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----------~~~~ 65 (201)
++.||-.||..|+++.+++.. |+ .|+++--+-+........+ .+.....|+.+. .+++
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~------gl~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQF------GLKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhh------CCeeEEeccCChHHHHHHHHHHhhCCC
Confidence 367899999999988877654 66 8888876644333333221 456666776542 1467
Q ss_pred CceeEEEecccccee
Q 028957 66 DCFDVVIEKATMEVL 80 (201)
Q Consensus 66 ~~~D~v~~~~~l~~~ 80 (201)
++.|+.+-+..-.+.
T Consensus 80 Gkld~L~NNAG~~C~ 94 (289)
T KOG1209|consen 80 GKLDLLYNNAGQSCT 94 (289)
T ss_pred CceEEEEcCCCCCcc
Confidence 888988876655554
No 371
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.23 E-value=12 Score=30.03 Aligned_cols=93 Identities=25% Similarity=0.274 Sum_probs=54.5
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C-C---------CceEEEEcccCCCC
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDLP 62 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~-~---------~~i~~~~~d~~~~~ 62 (201)
.+|.=+|+|. +.++..++..|. +|+..|.+++.++.+.+.+... + . .++.+ ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence 3567788875 244555556666 8999999999887765432211 1 1 11222 223221
Q ss_pred CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
....|+|+..-. +.......+++.+...++++..++
T Consensus 81 --~~~aD~Vieavp----------------e~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 --LADCDLVIEAAT----------------EDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred --hcCCCEEEEcCc----------------CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 135688885311 222345677888888998887655
No 372
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.10 E-value=5.8 Score=35.14 Aligned_cols=61 Identities=21% Similarity=0.360 Sum_probs=40.6
Q ss_pred cEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957 3 SVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE 73 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~ 73 (201)
+|+=+|||. .+..+++ .+. +++.+|.+++.++.+++. ....+.+|+.+.. ..-+++|.++.
T Consensus 419 hiiI~G~G~--~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~-------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 419 HALLVGYGR--VGSLLGEKLLAAGI-PLVVIETSRTRVDELRER-------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CEEEECCCh--HHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC-------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 455566654 4444444 344 899999999988877642 5688999988732 23356786664
No 373
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.85 E-value=7.5 Score=26.98 Aligned_cols=88 Identities=13% Similarity=0.212 Sum_probs=55.3
Q ss_pred CcEEEecCCCC-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCC-CCceeEEEeccccce
Q 028957 2 TSVLELGCGNS-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFS-NDCFDVVIEKATMEV 79 (201)
Q Consensus 2 ~~vLDlG~G~G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~~ 79 (201)
.+|.|+|-|-= ..+..++++|+ .++++|+++. +.. ..++++..|+++-... -...|+|.+.
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~----~g~~~v~DDitnP~~~iY~~A~lIYSi----- 77 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP----EGLRFVVDDITNPNISIYEGADLIYSI----- 77 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc----ccceEEEccCCCccHHHhhCccceeec-----
Confidence 48999998864 45556667787 8999999875 111 2578999998874321 1346888762
Q ss_pred eeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 80 LFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
++.+++...+-.+.+.+ |..+++...+
T Consensus 78 -------------RpppEl~~~ildva~aV--ga~l~I~pL~ 104 (129)
T COG1255 78 -------------RPPPELQSAILDVAKAV--GAPLYIKPLT 104 (129)
T ss_pred -------------CCCHHHHHHHHHHHHhh--CCCEEEEecC
Confidence 33355555555555544 3445555444
No 374
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=85.83 E-value=5.1 Score=36.28 Aligned_cols=103 Identities=11% Similarity=0.151 Sum_probs=57.0
Q ss_pred cEEEecCCCChhhHHHHhcC-------C-----C-eEEEEECCH---HHHHHHHHH-----------Hhh-----cCC--
Q 028957 3 SVLELGCGNSRLSEGLYNDG-------I-----T-AITCIDLSA---VAVEKMQER-----------LLL-----KGY-- 48 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~-------~-----~-~v~~vD~~~---~~~~~~~~~-----------~~~-----~~~-- 48 (201)
+|+|+|=|+|.......+.. + . +++++|..+ +.+..+... ... .+.
T Consensus 60 ~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 139 (662)
T PRK01747 60 VIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCHR 139 (662)
T ss_pred EEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCceE
Confidence 69999999998655554221 1 2 899999643 333332211 111 011
Q ss_pred -----C--ceEEEEcccCCC-CCCCCceeEEEeccccceeeecCCCCCCCCCccHHH-HHHHHHHHhhcccCCcEEEEE
Q 028957 49 -----K--EVKVLEADMLDL-PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-VMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 49 -----~--~i~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~ 118 (201)
. .+.+..+|+.+. +.-...+|+++..+ + -| ..+.+- -..+++.+.+.++|||++.-.
T Consensus 140 ~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~----F-----sP----~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 140 LLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG----F-----AP----AKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred EEecCCcEEEEEEecCHHHHHHhccccccEEEeCC----C-----CC----ccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0 234566776542 21124578877422 1 11 011122 268999999999999998744
No 375
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=85.78 E-value=2.9 Score=34.63 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=53.4
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcc--cC-CC-CCCCCceeEEEe
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEAD--ML-DL-PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d--~~-~~-~~~~~~~D~v~~ 73 (201)
|.+||-.|+|. |..+..+++. |..+|++++.+++..+.+++. +...+ .....+ .. .+ ......+|+|+-
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid 260 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTGGGVDYSFE 260 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhCCCCCEEEE
Confidence 46788888754 5555556665 444799999988887777542 22111 111100 00 00 011245898884
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEec
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSF 120 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 120 (201)
... ....+....+.++++ |+++....
T Consensus 261 ~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 261 CTG---------------------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCC---------------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 211 023566777888875 99887654
No 376
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=85.71 E-value=2.5 Score=34.43 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=51.9
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCC-C--CCCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L--PFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~-~--~~~~~~~D~v~~~ 74 (201)
+.+||-.|+|. |..+..+++. +...+++++.++...+.+++. +... +.....+... + ..+.+.+|+++..
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~ 243 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDCVIEA 243 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcEEEEc
Confidence 35677777653 5566666665 433788888877666655532 1111 1111111100 0 0123568988742
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.. ....+....+.|+++|+++...
T Consensus 244 ~g---------------------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 244 VG---------------------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cC---------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 11 0136777788999999988654
No 377
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.53 E-value=9.9 Score=34.86 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=61.5
Q ss_pred CcEEEecCCC-C-hhhHHHH-hcCCCeEEEEECCHHHHHHHHHHHhhc-------C----------CCceEEEEcccCCC
Q 028957 2 TSVLELGCGN-S-RLSEGLY-NDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDL 61 (201)
Q Consensus 2 ~~vLDlG~G~-G-~~~~~l~-~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~----------~~~i~~~~~d~~~~ 61 (201)
++|--+|+|+ | .++..++ ..|. .|+.+|.+++.++.+.+++... + ..++++. .|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH-
Confidence 4678899998 3 4444455 5577 9999999999888876654321 1 1123322 22211
Q ss_pred CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 62 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 62 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
-...|+|+-. + ++..+-.+++++++-+.++|+..+.-.+
T Consensus 387 ---~~~aDlViEa-----v-----------~E~~~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 387 ---FKHADVVIEA-----V-----------FEDLALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred ---hccCCEEeec-----c-----------cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1346888742 1 1556778899999999999987766443
No 378
>PRK08339 short chain dehydrogenase; Provisional
Probab=85.43 E-value=6.3 Score=30.97 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=45.8
Q ss_pred CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---------CCCCce
Q 028957 1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---------FSNDCF 68 (201)
Q Consensus 1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~~~ 68 (201)
++++|-.|++.| .++..+++.|. +|+.++.+++.++.+.+.+....-.++.++..|+.+.. ...+..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 356677776554 23334445576 89999999887776665554321136778888887632 012457
Q ss_pred eEEEeccc
Q 028957 69 DVVIEKAT 76 (201)
Q Consensus 69 D~v~~~~~ 76 (201)
|+++.+..
T Consensus 87 D~lv~nag 94 (263)
T PRK08339 87 DIFFFSTG 94 (263)
T ss_pred cEEEECCC
Confidence 88776543
No 379
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=85.40 E-value=6.7 Score=30.80 Aligned_cols=92 Identities=25% Similarity=0.236 Sum_probs=52.5
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+.+||-.|+|. |..+..+++. +..++++++.+++..+.+++. . ....+.....+ ......+|+++....
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~-g--~~~~~~~~~~~----~~~~~~~d~vl~~~~-- 168 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL-G--PADPVAADTAD----EIGGRGADVVIEASG-- 168 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc-C--CCccccccchh----hhcCCCCCEEEEccC--
Confidence 35677777765 5565666665 442399999988887765542 1 01111100000 112346888884211
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
....+....+.|+++|+++....
T Consensus 169 -------------------~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 -------------------SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred -------------------ChHHHHHHHHHhcCCcEEEEEec
Confidence 02356777888999999886643
No 380
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=85.36 E-value=2.8 Score=34.50 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=30.5
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHH
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQE 41 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~ 41 (201)
|.+||-.|||. |..+..+++. |. ++++++.+++.++.+++
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 46889999865 6666666665 55 89999999988877754
No 381
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=85.21 E-value=2.4 Score=35.16 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=55.1
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEc--ccCC-C-CCCCCceeEEEe
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA--DMLD-L-PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~--d~~~-~-~~~~~~~D~v~~ 73 (201)
|.+||-.|+|. |..+..+++. |...|++++.+++..+.+++ .+...+ ..... +... + ....+.+|+|+-
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 262 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFE 262 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCCcEEEE
Confidence 46788888764 5666666665 44379999999988877754 222111 11111 1110 0 111236888884
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCC-cEEEEEecC
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPD-GLFISVSFG 121 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~ 121 (201)
... -...+....+.++++ |+++.....
T Consensus 263 ~~g---------------------~~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 263 CIG---------------------NVKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred CCC---------------------ChHHHHHHHHhhccCCCeEEEEccC
Confidence 211 023566677888887 998876543
No 382
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.16 E-value=8.6 Score=30.91 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=29.4
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHH
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER 42 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~ 42 (201)
.+|.-+|+|. +.++..++..|. +|+.+|.+++.++.+.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~ 45 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMEL 45 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHH
Confidence 3677788885 345555566676 899999999998876554
No 383
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=84.98 E-value=2.5 Score=34.65 Aligned_cols=95 Identities=25% Similarity=0.285 Sum_probs=53.1
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C-C-CCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-P-FSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~-~-~~~~~~D~v~~~ 74 (201)
|.+||-.|+|. |..+..+++. |...|++++.+++..+.+++. +.+.+ .....+... + . .....+|+++-.
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~ 248 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVDVSFDC 248 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCCEEEEC
Confidence 35677777643 4555555555 444789999888877766442 22111 111111100 0 0 122348998842
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.. ....++.+.+.|+++|+++....
T Consensus 249 ~g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 249 AG---------------------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CC---------------------CHHHHHHHHHhccCCCEEEEEcc
Confidence 11 02356777888999999887654
No 384
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.83 E-value=5.7 Score=33.84 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=51.2
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|++|+-+|+|. |......++. |. +|+++|.++.....+.. .+. .+. +.... . ...|+|++...
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~----~G~---~v~--~leea-l--~~aDVVItaTG-- 259 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAM----DGF---RVM--TMEEA-A--KIGDIFITATG-- 259 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHh----cCC---EeC--CHHHH-H--hcCCEEEECCC--
Confidence 57899999987 5555555554 44 89999998865433321 121 222 11111 1 24598876311
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHH-HHhhcccCCcEEEEEecC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLE-GVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~ 121 (201)
...++. +....+|+|++++.....
T Consensus 260 -------------------~~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 -------------------NKDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred -------------------CHHHHHHHHHhcCCCCcEEEEECCC
Confidence 133444 477889999998876544
No 385
>PRK06701 short chain dehydrogenase; Provisional
Probab=84.74 E-value=16 Score=29.17 Aligned_cols=112 Identities=14% Similarity=0.219 Sum_probs=56.6
Q ss_pred CcEEEecCCCChhhHHH----HhcCCCeEEEEECCH-HHHHHHHHHHhhcCCCceEEEEcccCCCC-----CC-----CC
Q 028957 2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSA-VAVEKMQERLLLKGYKEVKVLEADMLDLP-----FS-----ND 66 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 66 (201)
+++|-.|++. .++..+ ++.|. +|+.++.+. ...+.....+...+ .++.++..|+.+.. +. .+
T Consensus 47 k~iLItGasg-gIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 47 KVALITGGDS-GIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CEEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5677777644 444444 44566 788887764 23333333333323 35778888886532 10 13
Q ss_pred ceeEEEeccccceeeecCCCCCCCC-Cc--------cHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 67 CFDVVIEKATMEVLFVNSGDPWNPQ-PE--------TVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 67 ~~D~v~~~~~l~~~~~~~~~~~~~~-~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
..|+++.+...... ..++.+. .+ +......+++.+.+.++++|.++++..
T Consensus 124 ~iD~lI~~Ag~~~~----~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 124 RLDILVNNAAFQYP----QQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred CCCEEEECCcccCC----CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 57888865432111 0000000 00 001133455566666677788776653
No 386
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.60 E-value=6.7 Score=36.15 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=62.6
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhc-------C-C---------CceEEEEcccCCCC
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLK-------G-Y---------KEVKVLEADMLDLP 62 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~-~---------~~i~~~~~d~~~~~ 62 (201)
++|--+|+|+ +.++..++..|. .|+.+|.+++.++.+.+++... + + .++++. .|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG-- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 3677889987 345555666777 9999999999988876654322 1 0 122222 22211
Q ss_pred CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
-...|+|+-. + +++.+-..+++.++-++++|+..+.-.+.
T Consensus 412 --~~~aDlViEA-----v-----------~E~l~~K~~vf~~l~~~~~~~~ilasNTS 451 (737)
T TIGR02441 412 --FKNADMVIEA-----V-----------FEDLSLKHKVIKEVEAVVPPHCIIASNTS 451 (737)
T ss_pred --hccCCeehhh-----c-----------cccHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 1346887742 2 14557788999999999999877664443
No 387
>PRK07102 short chain dehydrogenase; Provisional
Probab=84.32 E-value=6.3 Score=30.32 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=44.7
Q ss_pred CcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C--CCCceeE
Q 028957 2 TSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F--SNDCFDV 70 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~--~~~~~D~ 70 (201)
++++-.|+ +|.++..+++ .|. +|++++.+++..+...+.+......++.+++.|+.+.. . -...+|+
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 57777774 4555555444 465 89999998876655544443333347888999987632 0 0124688
Q ss_pred EEecc
Q 028957 71 VIEKA 75 (201)
Q Consensus 71 v~~~~ 75 (201)
++.+.
T Consensus 80 vv~~a 84 (243)
T PRK07102 80 VLIAV 84 (243)
T ss_pred EEECC
Confidence 88643
No 388
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=84.30 E-value=18 Score=30.56 Aligned_cols=98 Identities=24% Similarity=0.208 Sum_probs=63.2
Q ss_pred cEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceeee
Q 028957 3 SVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFV 82 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~ 82 (201)
+|+-++-.-|.++..++..++.. ..| +--.-....+|+..++++.-.+...+... +++ +.+|+|+...
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~--~~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~~~-~~~-~~~d~vl~~~------- 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYS--IGD-SYISELATRENLRLNGIDESSVKFLDSTA-DYP-QQPGVVLIKV------- 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCe--eeh-HHHHHHHHHHHHHHcCCCcccceeecccc-ccc-CCCCEEEEEe-------
Confidence 68889999999999998655521 133 33344556667777765322222222222 233 4589988521
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 83 NSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
|++.......+..+...|.||+.+++....
T Consensus 115 ---------PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 115 ---------PKTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred ---------CCCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 256678889999999999999998765443
No 389
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=84.27 E-value=14 Score=28.61 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=42.9
Q ss_pred CcEEEecCCCCh--hhHHHH--hc--CCCeEEEEECCHHHHHHHHHHHhhcCCC-ceEEEEcccC-CCCCCCCceeEEEe
Q 028957 2 TSVLELGCGNSR--LSEGLY--ND--GITAITCIDLSAVAVEKMQERLLLKGYK-EVKVLEADML-DLPFSNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~--~~~~l~--~~--~~~~v~~vD~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~-~~~~~~~~~D~v~~ 73 (201)
+.+++..|+.|. .++.|+ .+ +. ++++|-.+++.+...++.+...+.. .++|+.++.. .+-..-...|.++.
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 356777655432 233332 22 33 8999999988887777777766643 3588888743 22212245777773
No 390
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=84.23 E-value=4.5 Score=31.42 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=43.1
Q ss_pred CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957 2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~ 73 (201)
++++=+|||. | .++..|.+.|. .|+.+|.+++.++.....- .....+++|..+.. ..-..+|++++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~-----~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADE-----LDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhh-----cceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 4677788886 3 33444444455 8999999999877743210 14678888887632 33456888886
No 391
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=84.02 E-value=11 Score=30.38 Aligned_cols=87 Identities=22% Similarity=0.215 Sum_probs=50.3
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+.+||-.|+|. |..+..+++. |. ++++++.+++..+.+++ + +...+... .. ......+|+++....
T Consensus 156 g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~-~---g~~~~~~~----~~-~~~~~~~d~vid~~g-- 223 (319)
T cd08242 156 GDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR-L---GVETVLPD----EA-ESEGGGFDVVVEATG-- 223 (319)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH-c---CCcEEeCc----cc-cccCCCCCEEEECCC--
Confidence 35677776543 4444444444 55 79999988888777765 2 22111111 11 122356898885211
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
-...++...+.|+++|+++..
T Consensus 224 -------------------~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 -------------------SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred -------------------ChHHHHHHHHHhhcCCEEEEE
Confidence 023566777888999998863
No 392
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=83.77 E-value=11 Score=30.71 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=54.0
Q ss_pred CcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C-CCCCCceeEEEecc
Q 028957 2 TSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-PFSNDCFDVVIEKA 75 (201)
Q Consensus 2 ~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~-~~~~~~~D~v~~~~ 75 (201)
++||-.|+ |.|..+..+++. |..+|++++.+++..+.+++.+ +...+ .....+... + ......+|+|+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~~vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFDAAINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 67888886 346777777776 4437999998887776665532 22221 111111110 0 11124689888421
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
. ...+....+.|+++|+++...
T Consensus 233 g----------------------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G----------------------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred C----------------------cHHHHHHHHHhccCCEEEEEe
Confidence 1 113467788999999988754
No 393
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=83.59 E-value=13 Score=29.49 Aligned_cols=71 Identities=30% Similarity=0.368 Sum_probs=43.0
Q ss_pred CcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHH-------------------HHHHHHHHhhcCCCceEEEEcccCC
Q 028957 2 TSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVA-------------------VEKMQERLLLKGYKEVKVLEADMLD 60 (201)
Q Consensus 2 ~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~-------------------~~~~~~~~~~~~~~~i~~~~~d~~~ 60 (201)
.+|+-+|+|. |+++.+++.+ |..+++.+|.+.-. ++.++++...-+ |++++...+.+-
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~In-P~c~V~~~~~f~ 109 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQIN-PECEVTAINDFI 109 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhC-CCceEeehHhhh
Confidence 5788899976 8888777554 77789999965433 233444443322 455555544432
Q ss_pred CC-----CCCCceeEEEe
Q 028957 61 LP-----FSNDCFDVVIE 73 (201)
Q Consensus 61 ~~-----~~~~~~D~v~~ 73 (201)
.+ +-...||.|+-
T Consensus 110 t~en~~~~~~~~~DyvID 127 (263)
T COG1179 110 TEENLEDLLSKGFDYVID 127 (263)
T ss_pred CHhHHHHHhcCCCCEEEE
Confidence 11 23357898883
No 394
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=83.59 E-value=3.4 Score=33.58 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=53.6
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C--CCCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L--PFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~--~~~~~~~D~v~~~ 74 (201)
+.+||-.|+|. |..+..+++. +. +++++..+++..+.+++. +...+ .....+... + ..+...+|+++..
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~ 234 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGADVVIDA 234 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCCEEEEC
Confidence 45788887654 5666666665 54 888888887777666432 11111 111111100 1 1223458998852
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.. -...+..+.+.|+++|+++....
T Consensus 235 ~g---------------------~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 235 TG---------------------NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred CC---------------------CHHHHHHHHHHHhcCCEEEEEcC
Confidence 11 02356777889999999886543
No 395
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.49 E-value=7.5 Score=31.34 Aligned_cols=88 Identities=22% Similarity=0.160 Sum_probs=53.9
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEE-cccCCCCCCCCceeEEEecccc
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~~~~~l 77 (201)
.+|+=+|.|- |.++..+...|.. .+++.|.+...++.+.+. .+..-. .+... ......|+|+.+-
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-------gv~d~~~~~~~~--~~~~~aD~Vivav-- 72 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-------GVIDELTVAGLA--EAAAEADLVIVAV-- 72 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-------Ccccccccchhh--hhcccCCEEEEec--
Confidence 4567777764 5566666666765 689999888777766532 111111 11101 1134579998643
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
+......+++++...|++|..+.
T Consensus 73 ----------------Pi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 73 ----------------PIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ----------------cHHHHHHHHHHhcccCCCCCEEE
Confidence 33566888999998888876655
No 396
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=83.48 E-value=2.8 Score=30.08 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=24.3
Q ss_pred EecCCCC--hhhHHHH--hcCCC-eEEEEECCHHHHHHHHHH
Q 028957 6 ELGCGNS--RLSEGLY--NDGIT-AITCIDLSAVAVEKMQER 42 (201)
Q Consensus 6 DlG~G~G--~~~~~l~--~~~~~-~v~~vD~~~~~~~~~~~~ 42 (201)
|+|+..| ..+..++ ..+.. +|+++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 23333 899999999999999888
No 397
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=83.39 E-value=5.1 Score=33.56 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=50.6
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHH-HHHHHHHHhhcCCCceEEEE-cccCCCCCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVA-VEKMQERLLLKGYKEVKVLE-ADMLDLPFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~-~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~~~~~ 76 (201)
|++||-.|+|. |..+..+++. |. ++++++.+++. .+.++ ..+.+. ++. .+...+.-..+.+|+|+-...
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~----~lGa~~--~i~~~~~~~v~~~~~~~D~vid~~G 251 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAID----RLGADS--FLVTTDSQKMKEAVGTMDFIIDTVS 251 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHH----hCCCcE--EEcCcCHHHHHHhhCCCcEEEECCC
Confidence 45788888865 6666666665 54 78898877543 33332 223221 111 010011000124788874211
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
....+....+.++++|+++....
T Consensus 252 ---------------------~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 ---------------------AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ---------------------cHHHHHHHHHhhcCCCEEEEEcc
Confidence 12356677888999999987654
No 398
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=83.32 E-value=8.7 Score=27.29 Aligned_cols=97 Identities=20% Similarity=0.297 Sum_probs=51.1
Q ss_pred EEEecCCC-Ch-hhHHHHhcCCCeEEEEECCHHHHHHHHHHHh-hcCCC-ceEEEEcc-cCCCCCCCCceeEEEeccccc
Q 028957 4 VLELGCGN-SR-LSEGLYNDGITAITCIDLSAVAVEKMQERLL-LKGYK-EVKVLEAD-MLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 4 vLDlG~G~-G~-~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~-~~~~~-~i~~~~~d-~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|+=+|+|. |. ++..|++.+. +|..+.-.+ ..+..++.-- -.... +..+.... ..........+|+|+..-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v--- 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV--- 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S---
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe---
Confidence 45577775 43 3333334455 899999877 5555443210 00000 00111100 101011246799998631
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
......++++.+.+.+.++..+++...
T Consensus 76 ---------------Ka~~~~~~l~~l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 76 ---------------KAYQLEQALQSLKPYLDPNTTIVSLQN 102 (151)
T ss_dssp ---------------SGGGHHHHHHHHCTGEETTEEEEEESS
T ss_pred ---------------cccchHHHHHHHhhccCCCcEEEEEeC
Confidence 113557789999999999987776543
No 399
>PRK05854 short chain dehydrogenase; Provisional
Probab=83.11 E-value=10 Score=30.78 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=46.0
Q ss_pred CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCC----------CCC
Q 028957 1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP----------FSN 65 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~----------~~~ 65 (201)
|+++|-.|+++ .++..+ ++.|. +|+.+..+.+..+.+.+.+.... -.++.++..|+.+.. -..
T Consensus 14 gk~~lITGas~-GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 14 GKRAVVTGASD-GLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCEEEEeCCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 35667666654 444444 44566 89999988776666655543321 125788889987632 112
Q ss_pred CceeEEEecccc
Q 028957 66 DCFDVVIEKATM 77 (201)
Q Consensus 66 ~~~D~v~~~~~l 77 (201)
+..|+++.+...
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 468998876543
No 400
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.01 E-value=9.5 Score=30.50 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=49.6
Q ss_pred cEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 3 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 3 ~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
+|.=+|+|. |.++..+.+.+. +|+++|.+++.++.+.+. + .+.....+.. . ....|+|+..-
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g--~~~~~~~~~~---~-~~~aDlVilav----- 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----G--LVDEASTDLS---L-LKDCDLVILAL----- 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----C--CcccccCCHh---H-hcCCCEEEEcC-----
Confidence 466678775 445555556665 899999999887776542 1 1111111111 1 23568888532
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEE
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLF 115 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l 115 (201)
......++++++...++++..+
T Consensus 66 -------------p~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 66 -------------PIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred -------------CHHHHHHHHHHHHHhCCCCcEE
Confidence 2244567788888888776443
No 401
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.85 E-value=14 Score=29.52 Aligned_cols=95 Identities=19% Similarity=0.261 Sum_probs=52.3
Q ss_pred CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCce---EE-EEcccCCCCCCCCceeEEEecc
Q 028957 2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEV---KV-LEADMLDLPFSNDCFDVVIEKA 75 (201)
Q Consensus 2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i---~~-~~~d~~~~~~~~~~~D~v~~~~ 75 (201)
++|+=+|+|. | .++..+++.|. +|+.++.+++.++..++. +. .+ .. ..............+|+|+..-
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNEN----GL-RLEDGEITVPVLAADDPAELGPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHc----CC-cccCCceeecccCCCChhHcCCCCEEEEec
Confidence 3678889886 3 34444555565 899999877766555432 21 11 00 0000001011125689888531
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
- ......+++.+...+.++..++....
T Consensus 75 k------------------~~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 75 K------------------AYQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred c------------------cccHHHHHHHHhhhcCCCCEEEEecC
Confidence 1 12356788888888887777665543
No 402
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.60 E-value=8.4 Score=29.87 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=47.0
Q ss_pred CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957 1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC 67 (201)
Q Consensus 1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~ 67 (201)
++++|-.|+++| .++..+++.|. +|++++.+++.++...+.+...+ .++..+..|+.+.. + ..+.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 457787776554 23333344566 89999998887777666655443 35677888876531 0 1246
Q ss_pred eeEEEecccc
Q 028957 68 FDVVIEKATM 77 (201)
Q Consensus 68 ~D~v~~~~~l 77 (201)
.|+++.+...
T Consensus 87 id~lv~~ag~ 96 (253)
T PRK05867 87 IDIAVCNAGI 96 (253)
T ss_pred CCEEEECCCC
Confidence 7888866543
No 403
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.54 E-value=3.1 Score=35.03 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=61.5
Q ss_pred CcEEEecCCCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHH-------HhhcC--CCceEEEEcccCCCC---CCCCce
Q 028957 2 TSVLELGCGNSRLSEGLYND-GITAITCIDLSAVAVEKMQER-------LLLKG--YKEVKVLEADMLDLP---FSNDCF 68 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~-------~~~~~--~~~i~~~~~d~~~~~---~~~~~~ 68 (201)
+...|+|+|-|.+...++.. +...-+|+++....-+.+..+ .+..| ...+..+.++..+-. .-....
T Consensus 194 D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~ea 273 (419)
T KOG3924|consen 194 DVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTEA 273 (419)
T ss_pred CcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHhhcc
Confidence 45689999999999888766 344777888754444333332 22223 234667777765421 112456
Q ss_pred eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEE
Q 028957 69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISV 118 (201)
Q Consensus 69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 118 (201)
++++++++. -.+++..=+.++..-+++|.+++-.
T Consensus 274 tvi~vNN~~----------------Fdp~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 274 TVIFVNNVA----------------FDPELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred eEEEEeccc----------------CCHHHHHhhHHHHhhCCCcceEecc
Confidence 788776553 1133344445888889999988744
No 404
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=82.28 E-value=2.5 Score=35.47 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=27.6
Q ss_pred CcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHH
Q 028957 2 TSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQER 42 (201)
Q Consensus 2 ~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~ 42 (201)
.+|+-+|+|. |..+...+.. |. +|+.+|.+++..+.+...
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~ 209 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAE 209 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHh
Confidence 5688888875 5555555544 55 899999998776655443
No 405
>PRK07904 short chain dehydrogenase; Provisional
Probab=82.26 E-value=7.3 Score=30.47 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=44.3
Q ss_pred CCcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHH-HHHHHHHHhhcCCCceEEEEcccCCCC---------CCCC
Q 028957 1 MTSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVA-VEKMQERLLLKGYKEVKVLEADMLDLP---------FSND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~-~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~ 66 (201)
+++||-.|++ |.++..+++ .+..+|++++.+++. ++.+.+.+...+..++.++..|+.+.. ...+
T Consensus 8 ~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 8 PQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred CcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 3567878775 445555543 442388898887664 555544444433336888999986532 1124
Q ss_pred ceeEEEecc
Q 028957 67 CFDVVIEKA 75 (201)
Q Consensus 67 ~~D~v~~~~ 75 (201)
..|+++.+.
T Consensus 87 ~id~li~~a 95 (253)
T PRK07904 87 DVDVAIVAF 95 (253)
T ss_pred CCCEEEEee
Confidence 688877543
No 406
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.15 E-value=22 Score=27.78 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=41.3
Q ss_pred CCcEEEecCCC-ChhhHHHHh----cCCCeEEEEECCH---HHHHHHHHHHhhcCCCceEEEEcccCCCC----------
Q 028957 1 MTSVLELGCGN-SRLSEGLYN----DGITAITCIDLSA---VAVEKMQERLLLKGYKEVKVLEADMLDLP---------- 62 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~----~~~~~v~~vD~~~---~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------- 62 (201)
++++|-.|+++ +.++..+++ .|. +|+.++.+. +.++...+... + .++.++..|+.+..
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--G-QESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--C-CceEEEecCCCCHHHHHHHHHHHH
Confidence 46788888763 555555544 466 788776542 33333332221 1 35677888887532
Q ss_pred CCCCceeEEEeccc
Q 028957 63 FSNDCFDVVIEKAT 76 (201)
Q Consensus 63 ~~~~~~D~v~~~~~ 76 (201)
-..+..|+++.+..
T Consensus 83 ~~~g~ld~lv~nag 96 (257)
T PRK08594 83 EEVGVIHGVAHCIA 96 (257)
T ss_pred HhCCCccEEEECcc
Confidence 11257898886543
No 407
>PRK07677 short chain dehydrogenase; Provisional
Probab=82.05 E-value=10 Score=29.33 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=45.5
Q ss_pred CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-C---------CCCc
Q 028957 1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-F---------SNDC 67 (201)
Q Consensus 1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~~ 67 (201)
++++|-.|++.| .++..+++.|. +|++++.+....+.+.+.+...+ .++.++..|+.+.. . ..+.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 567887777554 13333444566 89999998877766665554333 36778888876521 0 1145
Q ss_pred eeEEEecc
Q 028957 68 FDVVIEKA 75 (201)
Q Consensus 68 ~D~v~~~~ 75 (201)
.|+++.+.
T Consensus 79 id~lI~~a 86 (252)
T PRK07677 79 IDALINNA 86 (252)
T ss_pred ccEEEECC
Confidence 78888654
No 408
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.88 E-value=22 Score=27.62 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=41.6
Q ss_pred CCcEEEecCCC-ChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCC
Q 028957 1 MTSVLELGCGN-SRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN 65 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 65 (201)
++++|-.|+++ +.++..+ ++.|. +|+.++.+....+.+++. .. .++.+++.|+.+.. -..
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~-~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL-VD---EEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh-cc---CceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 46778788763 4444444 44566 788887764433332221 11 25677888887531 012
Q ss_pred CceeEEEecccc
Q 028957 66 DCFDVVIEKATM 77 (201)
Q Consensus 66 ~~~D~v~~~~~l 77 (201)
+..|+++.+...
T Consensus 82 g~iD~lv~nAg~ 93 (252)
T PRK06079 82 GKIDGIVHAIAY 93 (252)
T ss_pred CCCCEEEEcccc
Confidence 568998876544
No 409
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=81.80 E-value=2.9 Score=29.62 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=43.4
Q ss_pred CCcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccc
Q 028957 1 MTSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKAT 76 (201)
Q Consensus 1 ~~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 76 (201)
++++|=+|+|. | .....++..+..+++.+.-+.+..+...+.+.. ..+.+...+ ++.-....+|+|+....
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~---~~~~~~~~~--~~~~~~~~~DivI~aT~ 84 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG---VNIEAIPLE--DLEEALQEADIVINATP 84 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG---CSEEEEEGG--GHCHHHHTESEEEE-SS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc---cccceeeHH--HHHHHHhhCCeEEEecC
Confidence 57899999875 2 233344455777899999998877666665522 245555443 22211357899997543
No 410
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=81.78 E-value=18 Score=29.78 Aligned_cols=95 Identities=21% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceE-EEEcccC----CC-C-CCCCceeEE
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVK-VLEADML----DL-P-FSNDCFDVV 71 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~----~~-~-~~~~~~D~v 71 (201)
|.+||-.|+|. |..+..+++. |..++++++.+++..+.+++ .+...+- ....+.. .+ . .....+|++
T Consensus 178 g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~v 253 (361)
T cd08231 178 GDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRGADVV 253 (361)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCCcEE
Confidence 35677777654 5555556665 44389999988876665542 2222111 1110000 00 0 123468988
Q ss_pred EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+.... -...+....+.|+++|+++....
T Consensus 254 id~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 254 IEASG---------------------HPAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EECCC---------------------ChHHHHHHHHHhccCCEEEEEcC
Confidence 84211 02356677789999999987653
No 411
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.78 E-value=5.6 Score=30.29 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=23.7
Q ss_pred CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECC
Q 028957 2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLS 32 (201)
Q Consensus 2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~ 32 (201)
.+|+-+|||. | ..+..++..|..+++.+|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 6899999985 3 45555666787799999976
No 412
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=81.75 E-value=5.7 Score=32.15 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEc-ccCC-C-CCCCCceeEEEe
Q 028957 1 MTSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA-DMLD-L-PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~-d~~~-~-~~~~~~~D~v~~ 73 (201)
|.+||=.|+ |.|..+..+++. |. ++++++.+++..+.+++ .+...+ ..... +... . ....+.+|+|+.
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d 213 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDGYDCYFD 213 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCCeEEEEE
Confidence 467888874 347777777776 44 89999988887776643 232211 11110 1111 0 112246898884
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
... ...+....+.|+++|+++...
T Consensus 214 ~~G----------------------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 214 NVG----------------------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCC----------------------HHHHHHHHHHhCcCcEEEEec
Confidence 211 124577788999999998764
No 413
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=81.71 E-value=19 Score=29.00 Aligned_cols=91 Identities=22% Similarity=0.179 Sum_probs=52.1
Q ss_pred CCcEEEecCC-CChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC-CCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCG-NSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD-LPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G-~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~v~~~~~l 77 (201)
+.+||-.|+| .|..+..+++. |. ++++++.+++..+.+++ + +... ++...-.. .....+.+|+++....
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~-~---g~~~--~~~~~~~~~~~~~~~~~d~vi~~~~- 234 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARK-L---GADE--VVDSGAELDEQAAAGGADVILVTVV- 234 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-h---CCcE--EeccCCcchHHhccCCCCEEEECCC-
Confidence 3567888876 35555555555 54 89999998887777643 2 1111 11110000 0001235888874211
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
....+..+.+.|+++|+++...
T Consensus 235 --------------------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 --------------------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --------------------cHHHHHHHHHhcccCCEEEEEC
Confidence 0235677788999999988764
No 414
>PLN02494 adenosylhomocysteinase
Probab=81.69 E-value=7.6 Score=33.73 Aligned_cols=88 Identities=13% Similarity=0.217 Sum_probs=51.1
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
|++|+-+|+|. |......++. |. +|+++|.++.....+.. .+. .+. ++... -...|+|+....-
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~---~vv--~leEa---l~~ADVVI~tTGt- 319 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGY---QVL--TLEDV---VSEADIFVTTTGN- 319 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCC---eec--cHHHH---HhhCCEEEECCCC-
Confidence 57889999886 5444444443 45 89999998765433322 121 111 22111 1346988863211
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
..-+..+..+.||+||.++.+...
T Consensus 320 -------------------~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 320 -------------------KDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred -------------------ccchHHHHHhcCCCCCEEEEcCCC
Confidence 111346778899999999877653
No 415
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.45 E-value=4.8 Score=32.20 Aligned_cols=92 Identities=22% Similarity=0.353 Sum_probs=54.9
Q ss_pred cEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHH-------hhcC-C---------CceEEEEcccCCCCC
Q 028957 3 SVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERL-------LLKG-Y---------KEVKVLEADMLDLPF 63 (201)
Q Consensus 3 ~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~-------~~~~-~---------~~i~~~~~d~~~~~~ 63 (201)
+|--+|+|. +.++..++..+. +|+++|.+++.++.+++++ ...+ . .++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 566788875 455666666676 8999999999887554322 2222 1 02221 223211
Q ss_pred CCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 64 SNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 64 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
....|+|+..-. +.......+++++.+.++++..+.
T Consensus 80 -~~~aDlVi~av~----------------e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 80 -LKDADLVIEAAT----------------ENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred -hccCCeeeeccc----------------ccHHHHHHHHHHHHhhCCCCcEEE
Confidence 244688885211 223445689999999998876653
No 416
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.26 E-value=25 Score=27.86 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=42.1
Q ss_pred CCcEEEecCCC-ChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCC
Q 028957 1 MTSVLELGCGN-SRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN 65 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 65 (201)
++.+|-.|+++ +.++..++ +.|. +|+.++.+....+.+++.....+. . .+++.|+.+.. -..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 46788888752 44554444 4566 888888875432333322222221 2 56778887632 113
Q ss_pred CceeEEEecccc
Q 028957 66 DCFDVVIEKATM 77 (201)
Q Consensus 66 ~~~D~v~~~~~l 77 (201)
+..|+++.+...
T Consensus 82 g~iDilVnnAG~ 93 (274)
T PRK08415 82 GKIDFIVHSVAF 93 (274)
T ss_pred CCCCEEEECCcc
Confidence 578998877554
No 417
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=81.22 E-value=7.7 Score=30.70 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=46.0
Q ss_pred hHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccceeeecCCCCCCCCCc
Q 028957 15 SEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVLFVNSGDPWNPQPE 93 (201)
Q Consensus 15 ~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~ 93 (201)
+..+.+.++. +|+++|.++..++.+.+. ++ +.-...+...+ ..+|+|+..-
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~--~~~~~~~~~~~----~~~Dlvvlav------------------ 53 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GI--IDEASTDIEAV----EDADLVVLAV------------------ 53 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TS--SSEEESHHHHG----GCCSEEEE-S------------------
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CC--eeeccCCHhHh----cCCCEEEEcC------------------
Confidence 4556667754 999999999988888643 21 11122221111 3459998643
Q ss_pred cHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 94 TVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 94 ~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
+.....++++++...+++|+.+.=+.
T Consensus 54 P~~~~~~~l~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 54 PVSAIEDVLEEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp -HHHHHHHHHHHHCGS-TTSEEEE--
T ss_pred CHHHHHHHHHHhhhhcCCCcEEEEeC
Confidence 33667899999999998887766443
No 418
>PRK06172 short chain dehydrogenase; Provisional
Probab=81.08 E-value=12 Score=29.00 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=46.0
Q ss_pred CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957 1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 66 (201)
++++|-.|++ |.++..+ ++.|. +|++++.+++.++...+.+...+ .++.++..|+.+.. + ..+
T Consensus 7 ~k~ilItGas-~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGGA-AGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3577777764 4444444 44465 89999998877766665554433 36788888887531 0 113
Q ss_pred ceeEEEeccc
Q 028957 67 CFDVVIEKAT 76 (201)
Q Consensus 67 ~~D~v~~~~~ 76 (201)
..|+++.+..
T Consensus 84 ~id~li~~ag 93 (253)
T PRK06172 84 RLDYAFNNAG 93 (253)
T ss_pred CCCEEEECCC
Confidence 5788886544
No 419
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=80.91 E-value=5.3 Score=32.68 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=52.2
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc---c-CCC-CCCCCceeEEEe
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD---M-LDL-PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d---~-~~~-~~~~~~~D~v~~ 73 (201)
+.+||-.|+|. |..+..+++. |.+.|++++.+++....+.+ + +.. .++... . ..+ ....+.+|+++.
T Consensus 176 ~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---g~~--~~~~~~~~~~~~~~~~~~~~~~d~vid 249 (350)
T cd08240 176 DEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-A---GAD--VVVNGSDPDAAKRIIKAAGGGVDAVID 249 (350)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h---CCc--EEecCCCccHHHHHHHHhCCCCcEEEE
Confidence 35677777654 5555555555 55478899988877766643 2 221 111111 0 000 011125888885
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
... ....+....+.|+++|+++...
T Consensus 250 ~~g---------------------~~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 250 FVN---------------------NSATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CCC---------------------CHHHHHHHHHHhhcCCeEEEEC
Confidence 211 0235777888899999988654
No 420
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=80.85 E-value=6.7 Score=31.97 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=52.0
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C--CCCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L--PFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~--~~~~~~~D~v~~~ 74 (201)
|.+||-.|+|. |..+..+++. |..++++++.+++..+.+++. +...+ .....+... + ......+|+|+..
T Consensus 164 g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~ 239 (341)
T PRK05396 164 GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GATRAVNVAKEDLRDVMAELGMTEGFDVGLEM 239 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHHHhcCCCCCCEEEEC
Confidence 35666667654 5555566655 443688888777666555432 22111 011111100 0 0123467888842
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
.. ....+..+.+.|+++|.++.....
T Consensus 240 ~g---------------------~~~~~~~~~~~l~~~G~~v~~g~~ 265 (341)
T PRK05396 240 SG---------------------APSAFRQMLDNMNHGGRIAMLGIP 265 (341)
T ss_pred CC---------------------CHHHHHHHHHHHhcCCEEEEEecC
Confidence 11 124667778899999999887543
No 421
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.75 E-value=9.5 Score=27.28 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=47.2
Q ss_pred cEEEecCCCChhhHHH----HhcCCCeEEEEECC--HHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957 3 SVLELGCGNSRLSEGL----YNDGITAITCIDLS--AVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND 66 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~--~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 66 (201)
++|=.|+++ .++..+ ++.+...|+.+..+ .+..+.....++..+ .++.+++.|+.+.. ...+
T Consensus 2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGASS-GIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCC-HHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 566677664 444444 44555588899888 666666666666555 58899999977532 1235
Q ss_pred ceeEEEeccc
Q 028957 67 CFDVVIEKAT 76 (201)
Q Consensus 67 ~~D~v~~~~~ 76 (201)
..|+++.+..
T Consensus 80 ~ld~li~~ag 89 (167)
T PF00106_consen 80 PLDILINNAG 89 (167)
T ss_dssp SESEEEEECS
T ss_pred cccccccccc
Confidence 7899886544
No 422
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=80.67 E-value=15 Score=30.37 Aligned_cols=93 Identities=20% Similarity=0.305 Sum_probs=53.5
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEc---ccC-CC-CCCCCceeEEEe
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEA---DML-DL-PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~-~~-~~~~~~~D~v~~ 73 (201)
+++||-.|+|. |..+..+++. |...+++++.++...+.+++. +.. .++.. +.. .+ ......+|+|+.
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~--~~i~~~~~~~~~~v~~~~~~~~d~vld 260 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT--HVINPKEEDLVAAIREITGGGVDYALD 260 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc--EEecCCCcCHHHHHHHHhCCCCcEEEE
Confidence 35677777654 5666666665 554799999988777666542 211 11111 110 00 011345888884
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.... ...+..+.+.|+++|+++....
T Consensus 261 ~~g~---------------------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 261 TTGV---------------------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CCCC---------------------cHHHHHHHHHhccCCEEEEeCc
Confidence 2110 2356777888999999887643
No 423
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.66 E-value=22 Score=28.57 Aligned_cols=87 Identities=20% Similarity=0.147 Sum_probs=49.1
Q ss_pred CcEEEecCCC-ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEecccccee
Q 028957 2 TSVLELGCGN-SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATMEVL 80 (201)
Q Consensus 2 ~~vLDlG~G~-G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 80 (201)
.+||-.|||. |..+..+++....++++++.+.+..+.+++ .+.. .++.. ... +...+|+++....
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~--~~~~~--~~~--~~~~vD~vi~~~~---- 234 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD--WAGDS--DDL--PPEPLDAAIIFAP---- 234 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc--EEecc--Ccc--CCCcccEEEEcCC----
Confidence 4666676654 444444444422388888888876666633 2221 11111 111 2345788774211
Q ss_pred eecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 81 FVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
....++.+.+.|+++|+++...
T Consensus 235 -----------------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 -----------------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -----------------cHHHHHHHHHHhhcCCEEEEEc
Confidence 1246788899999999988764
No 424
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=80.60 E-value=6.5 Score=32.36 Aligned_cols=95 Identities=19% Similarity=0.286 Sum_probs=57.9
Q ss_pred CCcEEEecCCC--ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCC-C-CCC-CCceeEEEe
Q 028957 1 MTSVLELGCGN--SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L-PFS-NDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~--G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~-~-~~~-~~~~D~v~~ 73 (201)
|.+||-.|+.. |.++.++++. |. .++++--+++-.+.+++. +.+. +.+...|+.. . ... ...+|+|+.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 46788888533 6788888877 44 666776666655544433 3222 2333443322 1 122 236999996
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
.-. ...+.+..+.|+++|+++.+....
T Consensus 218 ~vG----------------------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 218 TVG----------------------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCC----------------------HHHHHHHHHHhccCCEEEEEecCC
Confidence 321 356677888999999998876544
No 425
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.57 E-value=13 Score=28.73 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=45.8
Q ss_pred CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957 1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 66 (201)
+++||-.|+ +|.++..+ +..|. +|++++.++...+.+.+.+...+ .++.++..|+.+.. + ..+
T Consensus 5 ~k~vlItGa-~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 5 GKVVVVSGV-GPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 356776765 44454444 44566 89999998877766665554333 35788888886531 0 114
Q ss_pred ceeEEEeccc
Q 028957 67 CFDVVIEKAT 76 (201)
Q Consensus 67 ~~D~v~~~~~ 76 (201)
..|+++.+..
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 5788886543
No 426
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.55 E-value=13 Score=28.86 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=45.9
Q ss_pred CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957 1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 66 (201)
++++|-.|+ +|.++..++ +.|. +|++++.+++.++...+.+...+ .++.++..|+.+.. -..+
T Consensus 11 ~k~ilItGa-s~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 11 GQVALVTGS-ARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG-GAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 467777775 444454444 4466 89999998877766665554433 25778888876531 0124
Q ss_pred ceeEEEeccc
Q 028957 67 CFDVVIEKAT 76 (201)
Q Consensus 67 ~~D~v~~~~~ 76 (201)
+.|.++.+..
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 5788886543
No 427
>PRK06125 short chain dehydrogenase; Provisional
Probab=80.49 E-value=13 Score=28.93 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=45.8
Q ss_pred CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-CCCceeE
Q 028957 1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-SNDCFDV 70 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~~D~ 70 (201)
++++|=.|++. .++..+ +..|. +|++++.+++..+.+.+.+....-.++.++..|+.+.. + ..+..|+
T Consensus 7 ~k~vlItG~~~-giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGASK-GIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 35677777644 444444 44566 89999998887776665554332235778888876521 0 1246788
Q ss_pred EEeccc
Q 028957 71 VIEKAT 76 (201)
Q Consensus 71 v~~~~~ 76 (201)
++.+..
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 886543
No 428
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=80.46 E-value=14 Score=30.16 Aligned_cols=102 Identities=19% Similarity=0.202 Sum_probs=60.0
Q ss_pred CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcC---CCceEEEEcccC----CCCC-----CCCc
Q 028957 2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKG---YKEVKVLEADML----DLPF-----SNDC 67 (201)
Q Consensus 2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~---~~~i~~~~~d~~----~~~~-----~~~~ 67 (201)
++|--+|+|+ | .++..++..|. .|+..|++++.++.++......- ..+-.....+.. .+.. .-..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhcc
Confidence 4677788887 3 34444455446 89999999999887777554321 001011111100 0000 1134
Q ss_pred eeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 68 FDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 68 ~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.|+|+-. + +++.+-.+++++++-++++|+..+--.+.
T Consensus 83 ~DlVIEA-----v-----------~E~levK~~vf~~l~~~~~~~aIlASNTS 119 (307)
T COG1250 83 ADLVIEA-----V-----------VEDLELKKQVFAELEALAKPDAILASNTS 119 (307)
T ss_pred CCEEEEe-----c-----------cccHHHHHHHHHHHHhhcCCCcEEeeccC
Confidence 5777742 2 15567788999999999999877665443
No 429
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.36 E-value=24 Score=27.05 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=58.1
Q ss_pred CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCH-HHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CC
Q 028957 1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSA-VAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SN 65 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 65 (201)
++++|-.|+. |.++..++ ..|. +|++++.+. ...+.....+...+ .++.++.+|+.+.. + ..
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3678877764 44444444 3465 788877653 33343333333322 25678888887632 0 01
Q ss_pred CceeEEEeccccceeeecCCCCCCC-CCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 66 DCFDVVIEKATMEVLFVNSGDPWNP-QPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 66 ~~~D~v~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+..|+++.+...... ....|.. -.-+......+++.+.+.++.+|++++...
T Consensus 83 ~~~d~vi~~ag~~~~---~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 83 GGLDALVLNASGGME---SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCcEEEECCCCCCC---CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 357887755432110 0000000 001122245677777777766777776543
No 430
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.92 E-value=2.9 Score=35.05 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=51.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCC--eEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCC
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGIT--AITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDL 61 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 61 (201)
|.+|+|.+|-.|.-+..++....+ ++.+.|.+++..+...+.+...+...+....+|....
T Consensus 214 g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360|consen 214 GSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred CCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence 578999999999999888876432 8999999999999999999888877777778887764
No 431
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=79.54 E-value=11 Score=30.61 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=54.7
Q ss_pred CCcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEc-ccCC-C-CCCCCceeEEEe
Q 028957 1 MTSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA-DMLD-L-PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~-d~~~-~-~~~~~~~D~v~~ 73 (201)
|.+||-.|+ |-|..+..+++. |. ++++++.+++..+.+++.+ +...+ ..... +... + ....+.+|+|+-
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 467888876 236666667665 55 8999988888777776532 22121 11111 1111 0 111246888874
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.. . ...+....+.|+++|+++...
T Consensus 228 ~~--------------------g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 228 NV--------------------G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CC--------------------C--HHHHHHHHHHhccCcEEEEec
Confidence 21 1 145677889999999988664
No 432
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.47 E-value=7.7 Score=31.67 Aligned_cols=95 Identities=22% Similarity=0.300 Sum_probs=52.9
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEccc----CCC--CCCCCceeEE
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADM----LDL--PFSNDCFDVV 71 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~----~~~--~~~~~~~D~v 71 (201)
|.+||-.|+|. |..+..+++. |...+++++.+++..+.+++. +...+ .....+. ..+ ......+|++
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~v 238 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGKGPDVV 238 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCCCCCEE
Confidence 35677777654 5666666665 442488888887776666442 21111 1111110 000 1223458998
Q ss_pred EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
+.... ....+....+.|+++|+++....
T Consensus 239 ld~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 239 IECTG---------------------AESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred EECCC---------------------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 84211 02366778889999999886643
No 433
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.19 E-value=15 Score=28.42 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=44.3
Q ss_pred CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEE
Q 028957 1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVI 72 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~ 72 (201)
+++||-.|++ |.++..++ +.|. +|++++.++...+...+.....+ .++.++.+|+.+.. ......|+++
T Consensus 2 ~~~vlVtGas-g~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 2 SKTILITGAG-SGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRG-LALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 3567777764 44444443 4465 88888887766655554444333 25788888887532 1123678888
Q ss_pred eccc
Q 028957 73 EKAT 76 (201)
Q Consensus 73 ~~~~ 76 (201)
.+..
T Consensus 79 ~~ag 82 (257)
T PRK09291 79 NNAG 82 (257)
T ss_pred ECCC
Confidence 6543
No 434
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=79.00 E-value=6.9 Score=31.83 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=52.8
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCCCCCCCCceeEEEecccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLDLPFSNDCFDVVIEKATM 77 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~~D~v~~~~~l 77 (201)
+.+||-.|+|. |..+..+++. |. +++.++.+++..+.+++ + +...+ .....+....-.....+|+++....
T Consensus 164 ~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~-~---g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g- 237 (333)
T cd08296 164 GDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK-L---GAHHYIDTSKEDVAEALQELGGAKLILATAP- 237 (333)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH-c---CCcEEecCCCccHHHHHHhcCCCCEEEECCC-
Confidence 35788888654 5555555555 44 89999998887777643 2 22111 1111111000000124788874210
Q ss_pred ceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 78 EVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
....+....+.|+++|+++.....
T Consensus 238 --------------------~~~~~~~~~~~l~~~G~~v~~g~~ 261 (333)
T cd08296 238 --------------------NAKAISALVGGLAPRGKLLILGAA 261 (333)
T ss_pred --------------------chHHHHHHHHHcccCCEEEEEecC
Confidence 124667778899999998876543
No 435
>PRK10083 putative oxidoreductase; Provisional
Probab=78.83 E-value=11 Score=30.57 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=52.7
Q ss_pred CCcEEEecCCC-ChhhHHHHh-c-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-CCCCCCceeEEEecc
Q 028957 1 MTSVLELGCGN-SRLSEGLYN-D-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-LPFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~-~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~~~~~~~~D~v~~~~ 75 (201)
|.+||-.|+|. |..+..+++ . |...+++++.+++..+.+++. +.+.+ .....+... +.-....+|+++...
T Consensus 161 g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~ 236 (339)
T PRK10083 161 QDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGIKPTLIIDAA 236 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCCCCCEEEECC
Confidence 45788888654 555566666 3 665688899888877776542 22111 111111111 111112245666321
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
. ....+....+.|+++|+++.....
T Consensus 237 g---------------------~~~~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 237 C---------------------HPSILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred C---------------------CHHHHHHHHHHhhcCCEEEEEccC
Confidence 1 023567778899999999876543
No 436
>PRK07063 short chain dehydrogenase; Provisional
Probab=78.69 E-value=15 Score=28.52 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=46.3
Q ss_pred CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhc-CCCceEEEEcccCCCC-----C-----CC
Q 028957 1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLDLP-----F-----SN 65 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~-----~-----~~ 65 (201)
++++|-.|++. .++..+ ++.|. +|+.++.+++..+...+.+... .-.++.++..|+.+.. + ..
T Consensus 7 ~k~vlVtGas~-gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 7 GKVALVTGAAQ-GIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45778777654 444444 44566 8999999888777766665441 1135778888886532 0 12
Q ss_pred CceeEEEeccc
Q 028957 66 DCFDVVIEKAT 76 (201)
Q Consensus 66 ~~~D~v~~~~~ 76 (201)
+..|+++.+..
T Consensus 85 g~id~li~~ag 95 (260)
T PRK07063 85 GPLDVLVNNAG 95 (260)
T ss_pred CCCcEEEECCC
Confidence 46788886544
No 437
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.68 E-value=14 Score=29.19 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=45.7
Q ss_pred CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957 1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 66 (201)
++++|-.|++ |.++..+ +..|. +|+.++.+++.++...+.+...+ .++.++..|+.+.. -..+
T Consensus 6 ~k~vlVTGas-~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 6 GRGAVITGGA-SGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG-FDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 3567766665 4444444 44466 89999998877766655554433 25777888886532 0124
Q ss_pred ceeEEEecccc
Q 028957 67 CFDVVIEKATM 77 (201)
Q Consensus 67 ~~D~v~~~~~l 77 (201)
..|+++.+...
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 57988876543
No 438
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=78.50 E-value=23 Score=32.46 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=59.7
Q ss_pred CcEEEecCCC-C-hhhHHHH-hcCCCeEEEEECCHHHHHHHHHHHhhc-------C----------CCceEEEEcccCCC
Q 028957 2 TSVLELGCGN-S-RLSEGLY-NDGITAITCIDLSAVAVEKMQERLLLK-------G----------YKEVKVLEADMLDL 61 (201)
Q Consensus 2 ~~vLDlG~G~-G-~~~~~l~-~~~~~~v~~vD~~~~~~~~~~~~~~~~-------~----------~~~i~~~~~d~~~~ 61 (201)
++|--+|+|+ | .++..++ ..|. .|+.+|.+++.++.+.++.... + ..++++. .|...
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~- 381 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRG- 381 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHH-
Confidence 3678899987 3 2333344 3577 8999999999888776554211 1 1123222 22221
Q ss_pred CCCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 62 PFSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 62 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
-...|+|+-. + ++..+-..+++.++-+.++|+..+.-.+
T Consensus 382 ---~~~adlViEa-----v-----------~E~l~~K~~v~~~l~~~~~~~~ilasnT 420 (699)
T TIGR02440 382 ---FKDVDIVIEA-----V-----------FEDLALKHQMVKDIEQECAAHTIFASNT 420 (699)
T ss_pred ---hccCCEEEEe-----c-----------cccHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence 2356888842 1 1455777899999999999987665433
No 439
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.46 E-value=31 Score=27.17 Aligned_cols=74 Identities=12% Similarity=0.105 Sum_probs=41.6
Q ss_pred CCcEEEecCCCC-hh----hHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCC
Q 028957 1 MTSVLELGCGNS-RL----SEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN 65 (201)
Q Consensus 1 ~~~vLDlG~G~G-~~----~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 65 (201)
++++|=.|+++| .+ +..+++.|. +|+.++.+....+.+++..... +...++..|+.+.. -..
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQL--GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhcc--CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 456788887652 44 444455576 7888877643223333222211 24566778886531 112
Q ss_pred CceeEEEecccc
Q 028957 66 DCFDVVIEKATM 77 (201)
Q Consensus 66 ~~~D~v~~~~~l 77 (201)
+.+|+++.+..+
T Consensus 83 g~iD~linnAg~ 94 (262)
T PRK07984 83 PKFDGFVHSIGF 94 (262)
T ss_pred CCCCEEEECCcc
Confidence 568999877654
No 440
>PRK07035 short chain dehydrogenase; Provisional
Probab=78.45 E-value=15 Score=28.29 Aligned_cols=73 Identities=12% Similarity=0.278 Sum_probs=45.0
Q ss_pred CcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCce
Q 028957 2 TSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDCF 68 (201)
Q Consensus 2 ~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~~ 68 (201)
++||-.|+++| .++..+++.|. +|++++.+....+...+.+...+ .++.++..|+.+.. + ..++.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 86 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG-GKAEALACHIGEMEQIDALFAHIRERHGRL 86 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 56777776654 23333444566 89999998877766666554433 25677788876532 0 11357
Q ss_pred eEEEeccc
Q 028957 69 DVVIEKAT 76 (201)
Q Consensus 69 D~v~~~~~ 76 (201)
|+++.+..
T Consensus 87 d~li~~ag 94 (252)
T PRK07035 87 DILVNNAA 94 (252)
T ss_pred CEEEECCC
Confidence 98886544
No 441
>PRK07985 oxidoreductase; Provisional
Probab=78.39 E-value=33 Score=27.47 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=40.1
Q ss_pred CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECC--HHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCC
Q 028957 1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLS--AVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN 65 (201)
Q Consensus 1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~--~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 65 (201)
++++|-.|++.| .++..+++.|. +|+.++.+ .+..+...+.....+ .++.++..|+.+.. -..
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECG-RKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcC-CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 357787876543 23334444566 77777653 333444444333333 25677888887531 112
Q ss_pred CceeEEEeccc
Q 028957 66 DCFDVVIEKAT 76 (201)
Q Consensus 66 ~~~D~v~~~~~ 76 (201)
+..|+++.+..
T Consensus 127 g~id~lv~~Ag 137 (294)
T PRK07985 127 GGLDIMALVAG 137 (294)
T ss_pred CCCCEEEECCC
Confidence 45788876543
No 442
>PRK06484 short chain dehydrogenase; Validated
Probab=78.31 E-value=31 Score=30.00 Aligned_cols=70 Identities=24% Similarity=0.269 Sum_probs=42.6
Q ss_pred CCcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957 1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 66 (201)
|+++|-.|++.| ++.. +++.|. +|+.++.+++.++...+... .++..+..|+.+.. + ..+
T Consensus 269 ~k~~lItGas~g-IG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 269 PRVVAITGGARG-IGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALG----DEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356676666544 4444 444566 89999998877766654331 24556778876532 1 125
Q ss_pred ceeEEEeccc
Q 028957 67 CFDVVIEKAT 76 (201)
Q Consensus 67 ~~D~v~~~~~ 76 (201)
..|+++.+..
T Consensus 343 ~id~li~nAg 352 (520)
T PRK06484 343 RLDVLVNNAG 352 (520)
T ss_pred CCCEEEECCC
Confidence 6898887644
No 443
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.26 E-value=32 Score=27.21 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=40.7
Q ss_pred CCcEEEecCC-CChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCC
Q 028957 1 MTSVLELGCG-NSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSN 65 (201)
Q Consensus 1 ~~~vLDlG~G-~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 65 (201)
++++|-.|++ ++.++..++ +.|. +|+.+..+....+.+++.....+ ....++.|+.+.. -..
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELG--AFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcC--CceEEecCCCCHHHHHHHHHHHHHhc
Confidence 4567888875 355555554 4466 77777655333333333222222 3456778876521 112
Q ss_pred CceeEEEecccc
Q 028957 66 DCFDVVIEKATM 77 (201)
Q Consensus 66 ~~~D~v~~~~~l 77 (201)
+..|+++.+...
T Consensus 87 g~iD~lv~nAG~ 98 (272)
T PRK08159 87 GKLDFVVHAIGF 98 (272)
T ss_pred CCCcEEEECCcc
Confidence 568999877543
No 444
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=78.20 E-value=27 Score=27.94 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=52.9
Q ss_pred CcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC--------C--CCCce
Q 028957 2 TSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP--------F--SNDCF 68 (201)
Q Consensus 2 ~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~--~~~~~ 68 (201)
+++|--|+-+| .++..++++|. +++.+--+.+.++...+.+....--.+.++..|+.+.. . .....
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~I 85 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPI 85 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcc
Confidence 45555565444 24444555677 99999999999998888887654235788999987643 1 12478
Q ss_pred eEEEecccccee
Q 028957 69 DVVIEKATMEVL 80 (201)
Q Consensus 69 D~v~~~~~l~~~ 80 (201)
|+.+.+..+...
T Consensus 86 dvLVNNAG~g~~ 97 (265)
T COG0300 86 DVLVNNAGFGTF 97 (265)
T ss_pred cEEEECCCcCCc
Confidence 999987666543
No 445
>PRK06194 hypothetical protein; Provisional
Probab=78.20 E-value=14 Score=29.14 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=44.8
Q ss_pred CcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957 2 TSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC 67 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~ 67 (201)
+++|-.|+ +|.++..++ +.|. +|+.+|.+.+.++...+.+...+ .++.++.+|+.+.. + ..+.
T Consensus 7 k~vlVtGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 7 KVAVITGA-ASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG-AEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CEEEEeCC-ccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56776654 455555544 4466 89999998776666555544333 25777889987531 0 1135
Q ss_pred eeEEEecccc
Q 028957 68 FDVVIEKATM 77 (201)
Q Consensus 68 ~D~v~~~~~l 77 (201)
.|+++.+...
T Consensus 84 id~vi~~Ag~ 93 (287)
T PRK06194 84 VHLLFNNAGV 93 (287)
T ss_pred CCEEEECCCC
Confidence 7998876544
No 446
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=78.18 E-value=21 Score=28.62 Aligned_cols=93 Identities=17% Similarity=0.278 Sum_probs=49.0
Q ss_pred CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEE------EcccC-CCCCCCCceeEEE
Q 028957 2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVL------EADML-DLPFSNDCFDVVI 72 (201)
Q Consensus 2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~------~~d~~-~~~~~~~~~D~v~ 72 (201)
++|+=+|+|. | .++..+++.+. .|+.++. ++.++..++. +. .+... ..... +.......+|+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 73 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRER----GL-VIRSDHGDAVVPGPVITDPEELTGPFDLVI 73 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhC----Ce-EEEeCCCeEEecceeecCHHHccCCCCEEE
Confidence 3677888887 3 34445555565 7999988 6555554431 11 11100 00011 1111125678887
Q ss_pred eccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 73 EKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
..-- ......+++.+...+.++..++...
T Consensus 74 lavk------------------~~~~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 74 LAVK------------------AYQLDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred EEec------------------ccCHHHHHHHHHhhcCCCCEEEEee
Confidence 5211 1235677788888888776655443
No 447
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.87 E-value=16 Score=29.33 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=45.3
Q ss_pred CcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957 2 TSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC 67 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~ 67 (201)
++||-.|++ |.++..++ +.|. +|++++.+.+.++...+.+...+ ..+.++..|+.+.. + ..+.
T Consensus 41 k~vlItGas-ggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 41 KRILLTGAS-SGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG-GDAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 567777764 44444444 4465 89999999877776665554333 25678888887532 0 1246
Q ss_pred eeEEEeccc
Q 028957 68 FDVVIEKAT 76 (201)
Q Consensus 68 ~D~v~~~~~ 76 (201)
.|+++.+..
T Consensus 118 id~li~~AG 126 (293)
T PRK05866 118 VDILINNAG 126 (293)
T ss_pred CCEEEECCC
Confidence 788886543
No 448
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=77.87 E-value=6 Score=29.64 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=37.2
Q ss_pred CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
...+..|+|+.|++++.+.-..+.++ .+=.+.+++++..+..+|+++..++..+..
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~---~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~ 101 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSM---KTYRENLERLFSKLDSVLPIECLIVWNTAM 101 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCH---HHHHHHHHHHHHHHHhhCCCccEEEEecCC
Confidence 34677899999999988743332211 112234667777777888888888876544
No 449
>PRK08703 short chain dehydrogenase; Provisional
Probab=77.85 E-value=15 Score=28.11 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=35.3
Q ss_pred CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccC
Q 028957 1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML 59 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 59 (201)
++++|-.||+ |.++..+ ++.|. +|++++.+++..+...+.+...+.+.+.++..|+.
T Consensus 6 ~k~vlItG~s-ggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~ 66 (239)
T PRK08703 6 DKTILVTGAS-QGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLM 66 (239)
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeec
Confidence 4678888864 4444444 44466 89999998877766655554333234556666664
No 450
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.63 E-value=37 Score=28.91 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=41.2
Q ss_pred CcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----CCCCceeEEEe
Q 028957 2 TSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----FSNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~ 73 (201)
++|+=+|+ |.++..+++ .+. .|+.+|.+++.++.+++. ..+.++.+|..+.. ..-..+|.+++
T Consensus 1 m~viIiG~--G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 1 MKIIIVGA--GQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDR------LDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhh------cCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 35677776 555555554 344 899999999887766542 14677888876521 22356788875
No 451
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.46 E-value=7.4 Score=32.84 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=29.7
Q ss_pred CCcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHH
Q 028957 1 MTSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL 43 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~ 43 (201)
+++||-|++|..... .++..++++|++||+++......+=++
T Consensus 36 ~d~vl~ItSaG~N~L-~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 36 DDRVLTITSAGCNAL-DYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCeEEEEccCCchHH-HHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 467888876655444 445667779999999998776555443
No 452
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.35 E-value=22 Score=29.45 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=53.3
Q ss_pred CcEEEecCC-CChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEE-EcccCC-C-CCCCCceeEEEeccc
Q 028957 2 TSVLELGCG-NSRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKE-VKVL-EADMLD-L-PFSNDCFDVVIEKAT 76 (201)
Q Consensus 2 ~~vLDlG~G-~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~-~~d~~~-~-~~~~~~~D~v~~~~~ 76 (201)
++|--+|.| -|.++...+++..-+|+++|-+..--+.+-+.+ +.+. +.+. ..|.-. + ...+.-.|.|...
T Consensus 183 ~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L---GAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~-- 257 (360)
T KOG0023|consen 183 KWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL---GADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL-- 257 (360)
T ss_pred cEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc---CcceeEEecCCHHHHHHHHHhhcCcceeeeec--
Confidence 334444544 588888888884449999999875555555443 3221 1111 111111 0 1112334444421
Q ss_pred cceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 77 MEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
....++.+...||++|+++++....
T Consensus 258 ---------------------a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 258 ---------------------AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred ---------------------cccchHHHHHHhhcCCEEEEEeCcC
Confidence 1235566788999999999887644
No 453
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=77.28 E-value=4.4 Score=33.84 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=51.6
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEc---cc----CCCCCCCCceeE
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEA---DM----LDLPFSNDCFDV 70 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~---d~----~~~~~~~~~~D~ 70 (201)
|.+||-.|+|. |..+..+++. |..++++++.+++..+.+++ .+.+.+ ..... +. ..+ .....+|+
T Consensus 204 g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~-~~g~gvDv 278 (384)
T cd08265 204 GAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEV-TKGWGADI 278 (384)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHh-cCCCCCCE
Confidence 35677777654 4444555555 44379999988875555543 222221 11100 10 011 22345898
Q ss_pred EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
|+.... .....+....+.|+++|+++....
T Consensus 279 vld~~g--------------------~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 279 QVEAAG--------------------APPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred EEECCC--------------------CcHHHHHHHHHHHHcCCEEEEECC
Confidence 885211 113456677888899999887643
No 454
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.25 E-value=17 Score=27.60 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=36.5
Q ss_pred CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCC
Q 028957 1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLD 60 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 60 (201)
+++||-.|++ |.++..++ +.|. +|++++.+++..+.+.+..... .++.++..|+.+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCC
Confidence 3578888875 44444443 4466 8999999887766654444332 257888888775
No 455
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=77.17 E-value=15 Score=30.00 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=58.5
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEccc--------CCCCCCCCceeEE
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADM--------LDLPFSNDCFDVV 71 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~--------~~~~~~~~~~D~v 71 (201)
++|+-+|||. |.++..+++.+ ..|+.+--++. ++..+++ + +.+...+- ...+.....+|+|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----G---L~i~~~~~~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----G---LRIEDEGGNFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----C---eEEecCCCccccccccccChhhcCCCCEE
Confidence 4788899996 56777777777 46666665554 5555443 2 12211111 0111223478999
Q ss_pred EeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecCCccc
Q 028957 72 IEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFGQPHF 125 (201)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 125 (201)
+..- ..-...++++.+.+.+++...+++....-.+.
T Consensus 72 iv~v------------------Ka~q~~~al~~l~~~~~~~t~vl~lqNG~g~~ 107 (307)
T COG1893 72 IVTV------------------KAYQLEEALPSLAPLLGPNTVVLFLQNGLGHE 107 (307)
T ss_pred EEEe------------------ccccHHHHHHHhhhcCCCCcEEEEEeCCCcHH
Confidence 8531 11246789999999999998888766554443
No 456
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=77.16 E-value=16 Score=29.31 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=53.6
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHh-------hcC-C---------CceEEEEcccCCCC
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLL-------LKG-Y---------KEVKVLEADMLDLP 62 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~-------~~~-~---------~~i~~~~~d~~~~~ 62 (201)
++|-=+|+|. ..++..++..|. +|+++|.+++.++.+++.+. ..+ . ..+. ...+...
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~-- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEE-- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHH--
Confidence 3566778875 344555555666 89999999988876655432 111 0 0111 1122211
Q ss_pred CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEE
Q 028957 63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFI 116 (201)
Q Consensus 63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 116 (201)
-...|+|+..-. +..+....+++++...++++..++
T Consensus 81 --~~~aD~Vieav~----------------e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 --LRDADFIIEAIV----------------ESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred --hCCCCEEEEcCc----------------cCHHHHHHHHHHHHhhCCCCcEEE
Confidence 134588885311 234556778888888888876554
No 457
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=77.10 E-value=14 Score=30.20 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=26.4
Q ss_pred CCcEEEecCCC-ChhhHHHHh-cCCCeEEEEECCHHHHHHHHH
Q 028957 1 MTSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQE 41 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~-~~~~~v~~vD~~~~~~~~~~~ 41 (201)
+++|+-+|+|. |......+. .+...|+.++.+++..+...+
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~ 220 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAK 220 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 46889999876 444333333 355589999998876544433
No 458
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=77.04 E-value=18 Score=26.94 Aligned_cols=89 Identities=22% Similarity=0.240 Sum_probs=48.9
Q ss_pred cEEEecCCCChhhHHHHhcCCC-eEEEEECCHHHHHHHHHHHhhcCC---CceEEEEcccCCCC---------CCCCcee
Q 028957 3 SVLELGCGNSRLSEGLYNDGIT-AITCIDLSAVAVEKMQERLLLKGY---KEVKVLEADMLDLP---------FSNDCFD 69 (201)
Q Consensus 3 ~vLDlG~G~G~~~~~l~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~---------~~~~~~D 69 (201)
.|+.||||-=+....+...... .++-+|. +++++.-++.++..+. .+.+++..|+.+.. +..+..=
T Consensus 81 qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~pt 159 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRPT 159 (183)
T ss_dssp EEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSEE
T ss_pred EEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCCe
Confidence 6899999976666666554322 5666665 5566666555554421 13567999987521 3344455
Q ss_pred EEEeccccceeeecCCCCCCCCCccHHHHHHHHHHH
Q 028957 70 VVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGV 105 (201)
Q Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 105 (201)
++++-+++.++ ..+...++++.+
T Consensus 160 l~i~Egvl~Yl-------------~~~~~~~ll~~i 182 (183)
T PF04072_consen 160 LFIAEGVLMYL-------------SPEQVDALLRAI 182 (183)
T ss_dssp EEEEESSGGGS--------------HHHHHHHHHHH
T ss_pred EEEEcchhhcC-------------CHHHHHHHHHHh
Confidence 66666666655 445666666654
No 459
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=76.84 E-value=18 Score=28.28 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=47.4
Q ss_pred CCcEEEecCCCC---hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957 1 MTSVLELGCGNS---RLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC 67 (201)
Q Consensus 1 ~~~vLDlG~G~G---~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 67 (201)
++++|-.|++.| .++..++..|. +|+.++.+++.++.+.+.+...+ .++.++..|+.+.. ...+.
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG-IEAHGYVCDVTDEDGVQAMVSQIEKEVGV 87 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 356777776654 23334455566 78888988877776666665433 25788889987532 01246
Q ss_pred eeEEEecccc
Q 028957 68 FDVVIEKATM 77 (201)
Q Consensus 68 ~D~v~~~~~l 77 (201)
.|+++.+...
T Consensus 88 id~li~~ag~ 97 (265)
T PRK07097 88 IDILVNNAGI 97 (265)
T ss_pred CCEEEECCCC
Confidence 8998876543
No 460
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.74 E-value=32 Score=27.98 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=63.6
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECC-HHHHHHHHHHHhhcCC---CceEEEEcccCCCC----C-----CCCce
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLS-AVAVEKMQERLLLKGY---KEVKVLEADMLDLP----F-----SNDCF 68 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~-~~~~~~~~~~~~~~~~---~~i~~~~~d~~~~~----~-----~~~~~ 68 (201)
..|+-||||- -+....-.++..+...|++ |++++.=++.++..+. ...+++..|+..-. + ....-
T Consensus 94 ~qvViLgaGL--DTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 94 RQVVILGAGL--DTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred cEEEEecccc--ccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 4578888873 3322211223234444444 6777777777776652 26789999988422 2 22333
Q ss_pred eEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 69 DVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 69 D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
=+.++-+++-++ ..+...++++.+.....||-.++...
T Consensus 172 t~~iaEGLl~YL-------------~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 172 TLWIAEGLLMYL-------------PEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred eEEEeccccccC-------------CHHHHHHHHHHHHHhCCCCceEEEec
Confidence 455665666554 45778999999999998887777654
No 461
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=76.72 E-value=12 Score=33.15 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=57.0
Q ss_pred CCcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhc-CCCceEEEEcccCCCC-----CCCCceeE
Q 028957 1 MTSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLK-GYKEVKVLEADMLDLP-----FSNDCFDV 70 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~-----~~~~~~D~ 70 (201)
|++||-=| |+|+++.++.+ .++++++..|.++..+......+... +..++.++-+|+.+.. +..-+.|+
T Consensus 250 gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 250 GKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence 45666655 55777766655 46779999999999998888877664 2346788889998743 44456899
Q ss_pred EEecccccee
Q 028957 71 VIEKATMEVL 80 (201)
Q Consensus 71 v~~~~~l~~~ 80 (201)
|+-...+.|+
T Consensus 329 VfHAAA~KHV 338 (588)
T COG1086 329 VFHAAALKHV 338 (588)
T ss_pred EEEhhhhccC
Confidence 9976666665
No 462
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=76.68 E-value=8.6 Score=31.26 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=51.6
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc---cCCC-C-CCCCceeEEEe
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD---MLDL-P-FSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d---~~~~-~-~~~~~~D~v~~ 73 (201)
+.+||-.|+|. |..+..+++. |...+++++.+++..+.+++ .+.. .++..+ ...+ . .....+|+++.
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD--DTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC--EEecCccccHHHHHHHhCCCCCCEEEE
Confidence 35677787654 5566666655 44249999888776665543 1211 111111 0111 1 12235898884
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
... ....+..+.+.|+++|+++...
T Consensus 234 ~~g---------------------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 234 AAG---------------------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCC---------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 210 1235677788899999988764
No 463
>PRK07024 short chain dehydrogenase; Provisional
Probab=76.53 E-value=13 Score=28.85 Aligned_cols=71 Identities=25% Similarity=0.296 Sum_probs=44.3
Q ss_pred CcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957 2 TSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC 67 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 67 (201)
++||-.|+ +|.++..++ +.|. +|+.++.+++.++...+.+...+ ++.++..|+.+.. ...+.
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 46676665 455555544 4466 89999998877766554443222 6788888887531 01235
Q ss_pred eeEEEeccc
Q 028957 68 FDVVIEKAT 76 (201)
Q Consensus 68 ~D~v~~~~~ 76 (201)
.|+++.+..
T Consensus 79 id~lv~~ag 87 (257)
T PRK07024 79 PDVVIANAG 87 (257)
T ss_pred CCEEEECCC
Confidence 798887654
No 464
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=76.27 E-value=35 Score=27.67 Aligned_cols=95 Identities=20% Similarity=0.274 Sum_probs=49.4
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccC-CC--CCCCCceeEEEecc
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADML-DL--PFSNDCFDVVIEKA 75 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~--~~~~~~~D~v~~~~ 75 (201)
+.+||=.|+|. |..+..+++. |..++++++.+++....+.+ .+...+.....+.. .+ ..+...+|+++...
T Consensus 168 ~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~ 243 (344)
T cd08284 168 GDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGAEPINFEDAEPVERVREATEGRGADVVLEAV 243 (344)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCCeEEecCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 35666666543 4444445554 43478888877766555443 22110111111100 00 02234689888421
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
. -...+....+.|+++|+++....
T Consensus 244 ~---------------------~~~~~~~~~~~l~~~g~~v~~g~ 267 (344)
T cd08284 244 G---------------------GAAALDLAFDLVRPGGVISSVGV 267 (344)
T ss_pred C---------------------CHHHHHHHHHhcccCCEEEEECc
Confidence 1 02356777888999999886643
No 465
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=76.01 E-value=19 Score=27.82 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=46.4
Q ss_pred CCcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957 1 MTSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 66 (201)
+++||-.|+ +|.++..+++ .|. +|++++.+++..+...+.+...+ .++.++..|+.+.. + ..+
T Consensus 10 ~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 10 GRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQG-LSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-ceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 467777775 5555555544 466 89999998877766666555433 25777888887532 1 124
Q ss_pred ceeEEEeccc
Q 028957 67 CFDVVIEKAT 76 (201)
Q Consensus 67 ~~D~v~~~~~ 76 (201)
..|+++.+..
T Consensus 87 ~~d~li~~ag 96 (255)
T PRK07523 87 PIDILVNNAG 96 (255)
T ss_pred CCCEEEECCC
Confidence 5788886543
No 466
>PRK08862 short chain dehydrogenase; Provisional
Probab=75.74 E-value=18 Score=27.83 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=46.5
Q ss_pred CCcEEEecCCCCh---hhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC-
Q 028957 1 MTSVLELGCGNSR---LSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND- 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~---~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~- 66 (201)
++++|-.|++.|. ++..+++.|. +|+.++.+++.++...+.+...+ ..+..+..|+.+.. + ..+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT-DNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4677888877763 4444555676 89999998888777666554433 24556667765421 0 113
Q ss_pred ceeEEEecc
Q 028957 67 CFDVVIEKA 75 (201)
Q Consensus 67 ~~D~v~~~~ 75 (201)
..|+++.+.
T Consensus 83 ~iD~li~na 91 (227)
T PRK08862 83 APDVLVNNW 91 (227)
T ss_pred CCCEEEECC
Confidence 688888764
No 467
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=75.48 E-value=22 Score=28.73 Aligned_cols=89 Identities=21% Similarity=0.214 Sum_probs=49.9
Q ss_pred CcEEEecCCC-C-hhhHHHHhcCC-CeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 2 TSVLELGCGN-S-RLSEGLYNDGI-TAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 2 ~~vLDlG~G~-G-~~~~~l~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
.+|.=+|+|. | .++..+...+. .+|+++|.+++..+.+++ .+. ......+.... ....|+|+....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~--~~~~~~~~~~~---~~~aDvViiavp-- 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGL--GDRVTTSAAEA---VKGADLVILCVP-- 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCC--CceecCCHHHH---hcCCCEEEECCC--
Confidence 4677788876 2 34444444554 289999999887766543 221 01111121111 134698886322
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 117 (201)
......+++.+...+++++.++.
T Consensus 76 ----------------~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 76 ----------------VGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ----------------HHHHHHHHHHHHhhCCCCCEEEe
Confidence 12345667777778888876543
No 468
>PRK07814 short chain dehydrogenase; Provisional
Probab=75.41 E-value=22 Score=27.73 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=45.1
Q ss_pred CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-C---------CCC
Q 028957 1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-F---------SND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~ 66 (201)
++++|-.|+ +|.++..++ ..|. +|++++.+++..+...+.+...+ .++.++..|+.+.. . ..+
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777775 455555544 4566 89999998877666655554333 35778888877632 0 013
Q ss_pred ceeEEEecc
Q 028957 67 CFDVVIEKA 75 (201)
Q Consensus 67 ~~D~v~~~~ 75 (201)
..|+++.+.
T Consensus 87 ~id~vi~~A 95 (263)
T PRK07814 87 RLDIVVNNV 95 (263)
T ss_pred CCCEEEECC
Confidence 678888654
No 469
>PRK08643 acetoin reductase; Validated
Probab=75.39 E-value=22 Score=27.48 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=45.3
Q ss_pred CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957 1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 66 (201)
++++|-.|+. |.++..+ ++.|. +|++++.+++..+.+...+...+ .++.++..|+.+.. + ..+
T Consensus 2 ~k~~lItGas-~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTGAG-QGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3566766654 4444444 44466 89999998877766666554433 35677888887632 0 124
Q ss_pred ceeEEEeccc
Q 028957 67 CFDVVIEKAT 76 (201)
Q Consensus 67 ~~D~v~~~~~ 76 (201)
..|+++.+..
T Consensus 79 ~id~vi~~ag 88 (256)
T PRK08643 79 DLNVVVNNAG 88 (256)
T ss_pred CCCEEEECCC
Confidence 5788886543
No 470
>PRK07478 short chain dehydrogenase; Provisional
Probab=75.28 E-value=23 Score=27.40 Aligned_cols=72 Identities=14% Similarity=0.220 Sum_probs=45.1
Q ss_pred CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957 2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC 67 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~ 67 (201)
+++|-.|++ |.++..+ ++.|. +|+.++.+++.++.+.+.+...+ .++.++..|+.+.. + ..+.
T Consensus 7 k~~lItGas-~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 7 KVAIITGAS-SGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG-GEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 466766655 4444444 44566 89999988877776666555443 35778888876532 1 1246
Q ss_pred eeEEEeccc
Q 028957 68 FDVVIEKAT 76 (201)
Q Consensus 68 ~D~v~~~~~ 76 (201)
.|+++.+..
T Consensus 84 id~li~~ag 92 (254)
T PRK07478 84 LDIAFNNAG 92 (254)
T ss_pred CCEEEECCC
Confidence 788886654
No 471
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=75.25 E-value=17 Score=28.26 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=45.5
Q ss_pred CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCCc
Q 028957 2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSNDC 67 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 67 (201)
+++|-.|++.| ++..+ ++.|. +|+.++.+++.++.+.+.+...+ ++.++..|+.+.. ...+.
T Consensus 1 m~vlItGas~g-IG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 1 MNVLVTASSRG-IGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred CeEEEEcCCcH-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 35777776544 44444 44566 89999999887776666554432 5678888886531 11246
Q ss_pred eeEEEeccc
Q 028957 68 FDVVIEKAT 76 (201)
Q Consensus 68 ~D~v~~~~~ 76 (201)
.|+++.+..
T Consensus 77 id~li~naG 85 (259)
T PRK08340 77 IDALVWNAG 85 (259)
T ss_pred CCEEEECCC
Confidence 898887644
No 472
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=75.06 E-value=13 Score=30.18 Aligned_cols=94 Identities=14% Similarity=0.101 Sum_probs=49.3
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhhcCC------CceEEEEcccCCCCCCCCceeEEEe
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQERLLLKGY------KEVKVLEADMLDLPFSNDCFDVVIE 73 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~------~~i~~~~~d~~~~~~~~~~~D~v~~ 73 (201)
++|+=+|+|. |.++..+++.|. .|+.+..++. +... ..+. .+..+....+...+-....+|+|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~--~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY--EAVR----ENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH--HHHH----hCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 4788899886 456666666666 7777776542 2221 1111 0111100011111111356898875
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.--. ....++++.+...+++++.++....
T Consensus 79 avK~------------------~~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 79 GLKT------------------TANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred EecC------------------CChHhHHHHHhhhcCCCCEEEEecC
Confidence 2111 1235677788888899988776543
No 473
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=75.06 E-value=4.1 Score=33.30 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 96 TKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 96 ~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
..+.++|+.+..+|+|||++.+++|..
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 347888999999999999999999864
No 474
>PRK09072 short chain dehydrogenase; Provisional
Probab=74.91 E-value=21 Score=27.84 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=44.1
Q ss_pred CcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC---------CCCCce
Q 028957 2 TSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP---------FSNDCF 68 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~~~ 68 (201)
+++|-.|+++ .++.. +++.|. +|++++.+++.++.....+.. + .++.++..|+.+.. ...+..
T Consensus 6 ~~vlItG~s~-~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 6 KRVLLTGASG-GIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPY-P-GRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhc-C-CceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 4567776554 44444 445566 899999988777666554422 2 36788888887632 002457
Q ss_pred eEEEeccc
Q 028957 69 DVVIEKAT 76 (201)
Q Consensus 69 D~v~~~~~ 76 (201)
|+++.+..
T Consensus 82 d~lv~~ag 89 (263)
T PRK09072 82 NVLINNAG 89 (263)
T ss_pred CEEEECCC
Confidence 88886543
No 475
>PRK07062 short chain dehydrogenase; Provisional
Probab=74.81 E-value=22 Score=27.71 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcC-CCceEEEEcccCCCC----------CCC
Q 028957 1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKG-YKEVKVLEADMLDLP----------FSN 65 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~----------~~~ 65 (201)
++++|-.|++.| ++..+ +..|. +|++++.+++.++.+.+.+.... -.++.++..|+.+.. -..
T Consensus 8 ~k~~lItGas~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 8 GRVAVVTGGSSG-IGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 356777776544 44444 44566 89999998877766655544321 125677888876632 012
Q ss_pred CceeEEEecccc
Q 028957 66 DCFDVVIEKATM 77 (201)
Q Consensus 66 ~~~D~v~~~~~l 77 (201)
+..|+++.+...
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 467888866543
No 476
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=74.69 E-value=12 Score=30.97 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEc--ccCC-C-CCCCCceeEEEe
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEA--DMLD-L-PFSNDCFDVVIE 73 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~--d~~~-~-~~~~~~~D~v~~ 73 (201)
|.+||-.|+|. |..+..+++. |...+++++.+++..+.+.+ + +... +..... +... + ....+.+|+++.
T Consensus 184 g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid 259 (365)
T cd05279 184 GSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-L---GATECINPRDQDKPIVEVLTEMTDGGVDYAFE 259 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h---CCCeecccccccchHHHHHHHHhCCCCcEEEE
Confidence 35677777654 5555555555 54468889988887777643 2 2111 111111 1100 0 011245888884
Q ss_pred ccccceeeecCCCCCCCCCccHHHHHHHHHHHhhccc-CCcEEEEEec
Q 028957 74 KATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLK-PDGLFISVSF 120 (201)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~ 120 (201)
... ....+....+.|+ ++|+++....
T Consensus 260 ~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 260 VIG---------------------SADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred CCC---------------------CHHHHHHHHHHhccCCCEEEEEec
Confidence 211 1246667788888 9999887643
No 477
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=74.64 E-value=32 Score=27.61 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=53.4
Q ss_pred CCcEEEecC--CCChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEcccCC-C-CCCCCceeEEEec
Q 028957 1 MTSVLELGC--GNSRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADMLD-L-PFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~--G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~-~~~~~~~D~v~~~ 74 (201)
|.+||-.|+ |.|..+..+++. |. ++++++.+++..+.+++ .+...+ .....|... + ......+|+|+..
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~ 218 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDGIDCYFDN 218 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCCcEEEEEC
Confidence 457777774 336666667666 54 89999988887777654 232111 111111110 0 1112458888842
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
. . ...++...+.|+++|+++...
T Consensus 219 ~--------------------g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 219 V--------------------G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred C--------------------C--HHHHHHHHHhhccCCEEEEEc
Confidence 1 1 145677889999999988654
No 478
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=74.58 E-value=23 Score=27.46 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=44.7
Q ss_pred CCcEEEecCCCChhhHH----HHhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957 1 MTSVLELGCGNSRLSEG----LYNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~----l~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 66 (201)
+++||-.|+++| ++.. +++.|. +++.++.+.+..+.+...+...+ .++.++..|+.+.. ...+
T Consensus 11 ~k~vlVtG~s~g-IG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 11 GKCAIITGAGAG-IGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467888886554 4433 444566 78888888777766555444333 25677888887532 0124
Q ss_pred ceeEEEeccc
Q 028957 67 CFDVVIEKAT 76 (201)
Q Consensus 67 ~~D~v~~~~~ 76 (201)
..|+++.+..
T Consensus 88 ~~d~li~~ag 97 (255)
T PRK06113 88 KVDILVNNAG 97 (255)
T ss_pred CCCEEEECCC
Confidence 5788886544
No 479
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=74.57 E-value=6.3 Score=32.00 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=41.9
Q ss_pred cCCCChhhHHHHhc----CCCeEEEEECCHHHHHHHHHHHhhcC-CCceE----EEEcccCCCC-----CCCCceeEEEe
Q 028957 8 GCGNSRLSEGLYND----GITAITCIDLSAVAVEKMQERLLLKG-YKEVK----VLEADMLDLP-----FSNDCFDVVIE 73 (201)
Q Consensus 8 G~G~G~~~~~l~~~----~~~~v~~vD~~~~~~~~~~~~~~~~~-~~~i~----~~~~d~~~~~-----~~~~~~D~v~~ 73 (201)
-.|+|.++.++.+. ++.+++.+|.++..+-..++.+.... -+++. .+.+|+.+.. +.....|+|+-
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 34678877777654 56699999999999988888874321 12344 3577877532 55567899997
Q ss_pred cccccee
Q 028957 74 KATMEVL 80 (201)
Q Consensus 74 ~~~l~~~ 80 (201)
...+.|+
T Consensus 84 aAA~KhV 90 (293)
T PF02719_consen 84 AAALKHV 90 (293)
T ss_dssp ------H
T ss_pred ChhcCCC
Confidence 7666655
No 480
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.50 E-value=23 Score=27.08 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=45.0
Q ss_pred CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957 1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 66 (201)
++++|-.|+ +|.++..++ +.|. +|+.++.++..++.+.+.+...+ .++.+++.|+.+.. + ..+
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG-TEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 357787775 344444444 3455 89999998877666655554433 35777888876521 0 014
Q ss_pred ceeEEEeccc
Q 028957 67 CFDVVIEKAT 76 (201)
Q Consensus 67 ~~D~v~~~~~ 76 (201)
..|+|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 5788887543
No 481
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=74.38 E-value=11 Score=30.71 Aligned_cols=93 Identities=22% Similarity=0.258 Sum_probs=50.0
Q ss_pred CcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCc-eEEEEcccCC-C--CCCCCceeEEEecc
Q 028957 2 TSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKE-VKVLEADMLD-L--PFSNDCFDVVIEKA 75 (201)
Q Consensus 2 ~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~-~--~~~~~~~D~v~~~~ 75 (201)
.+||-.|+|. |..+..+++. |..++++++.++.....+++. +.+. +.....+... + ......+|+++...
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKGDAIEQVLELTDGRGVDVVIEAV 243 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccccHHHHHHHHhCCCCCCEEEECC
Confidence 4566666643 4444555555 424788898887766655432 2211 1111111100 0 01234589888421
Q ss_pred ccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEe
Q 028957 76 TMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
. ....+..+.+.|+++|+++...
T Consensus 244 g---------------------~~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 244 G---------------------IPATFELCQELVAPGGHIANVG 266 (345)
T ss_pred C---------------------CHHHHHHHHHhccCCcEEEEec
Confidence 0 1235677779999999988654
No 482
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.23 E-value=7 Score=32.15 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=29.9
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHH
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQER 42 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~ 42 (201)
|++|.-+|+|. |.-..+-++. |..+++++|++++-.+.+++.
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 46677788876 4333333443 666999999999999888764
No 483
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=74.18 E-value=15 Score=31.15 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcccCCcEEEEEecCCccccc
Q 028957 96 TKVMAMLEGVHRVLKPDGLFISVSFGQPHFRR 127 (201)
Q Consensus 96 ~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~ 127 (201)
.-..++.+.+.+.|++|-.+++.+...|--.+
T Consensus 105 s~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe 136 (436)
T COG0677 105 SYVESAARSIAPVLKKGDLVILESTTPPGTTE 136 (436)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCCCcHH
Confidence 44678899999999998887776655554333
No 484
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=74.11 E-value=17 Score=29.45 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=48.8
Q ss_pred CCcEEEecCCC-ChhhHHHHh-cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCCCCCCceeEEEeccccc
Q 028957 1 MTSVLELGCGN-SRLSEGLYN-DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLPFSNDCFDVVIEKATME 78 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~-~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 78 (201)
+++|+-+|+|. |......+. .|. +|+.+|.++...+.++. .+. .++.. .++...-..+|+|+.....
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~----~G~---~~~~~--~~l~~~l~~aDiVI~t~p~- 220 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITE----MGL---SPFHL--SELAEEVGKIDIIFNTIPA- 220 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCC---eeecH--HHHHHHhCCCCEEEECCCh-
Confidence 57889999875 333333333 355 99999999776554432 221 22211 1111112468999863110
Q ss_pred eeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEecC
Q 028957 79 VLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSFG 121 (201)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 121 (201)
.-+-++..+.++|++.++-+...
T Consensus 221 --------------------~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 221 --------------------LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred --------------------hhhhHHHHHcCCCCcEEEEEccC
Confidence 11234566778898876654443
No 485
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=73.91 E-value=22 Score=31.29 Aligned_cols=94 Identities=18% Similarity=0.334 Sum_probs=56.3
Q ss_pred CcEEEecCCC-C-hhhHHHHhcCCCeEEEEECCHHHHHHHHHHHhh-------cC----------CCceEEEEcccCCCC
Q 028957 2 TSVLELGCGN-S-RLSEGLYNDGITAITCIDLSAVAVEKMQERLLL-------KG----------YKEVKVLEADMLDLP 62 (201)
Q Consensus 2 ~~vLDlG~G~-G-~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~~~-------~~----------~~~i~~~~~d~~~~~ 62 (201)
++|--||+|+ | .++..++..|. .|+..|.+++.++.+.+++.. .+ ..++... .|...
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~-- 83 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALAD-- 83 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 3566788885 3 45666667777 899999999998886554421 11 0122322 22222
Q ss_pred CCCCceeEEEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEE
Q 028957 63 FSNDCFDVVIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFIS 117 (201)
Q Consensus 63 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 117 (201)
+ ...|+|+..- . ++.+-...++.++...++++..+..
T Consensus 84 ~--~~aDlViEav-~---------------E~~~vK~~vf~~l~~~~~~~ailas 120 (507)
T PRK08268 84 L--ADCDLVVEAI-V---------------ERLDVKQALFAQLEAIVSPDCILAT 120 (507)
T ss_pred h--CCCCEEEEcC-c---------------ccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 2 2468888531 1 3445566777888887777655543
No 486
>PRK07326 short chain dehydrogenase; Provisional
Probab=73.88 E-value=24 Score=26.76 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=43.9
Q ss_pred CcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957 2 TSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC 67 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~ 67 (201)
++||-.|+ +|.++..+++ .+. +|++++.++...+...+.+... .++.++.+|+.+.. + ..+.
T Consensus 7 ~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 7 KVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46777774 5666555544 455 7999998887666665554432 36788888876531 1 1135
Q ss_pred eeEEEecc
Q 028957 68 FDVVIEKA 75 (201)
Q Consensus 68 ~D~v~~~~ 75 (201)
.|+++...
T Consensus 83 ~d~vi~~a 90 (237)
T PRK07326 83 LDVLIANA 90 (237)
T ss_pred CCEEEECC
Confidence 78888543
No 487
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=73.80 E-value=24 Score=26.92 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=44.3
Q ss_pred CCcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957 1 MTSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 66 (201)
+++||-.|+ +|.++..+ ++.|. +|++++-++.......+.+...+ .++.++.+|+.+.. + ..+
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 356776665 45555544 44566 89999988766655555554333 35788888887531 1 113
Q ss_pred ceeEEEecc
Q 028957 67 CFDVVIEKA 75 (201)
Q Consensus 67 ~~D~v~~~~ 75 (201)
.+|+|+...
T Consensus 83 ~~d~vi~~a 91 (251)
T PRK12826 83 RLDILVANA 91 (251)
T ss_pred CCCEEEECC
Confidence 578888654
No 488
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=73.73 E-value=21 Score=27.43 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=44.6
Q ss_pred CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC------------CC
Q 028957 1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP------------FS 64 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------------~~ 64 (201)
+++||=.|+ +|.++..++ +.|. +|++++.+.+..+...+.+...+..++.++..|+.... -.
T Consensus 12 ~k~vlItG~-~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 12 DRIILVTGA-GDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 356777775 555555444 4465 89999998877666655555444345667777764211 01
Q ss_pred CCceeEEEeccc
Q 028957 65 NDCFDVVIEKAT 76 (201)
Q Consensus 65 ~~~~D~v~~~~~ 76 (201)
.+..|.++.+..
T Consensus 90 ~~~id~vi~~Ag 101 (247)
T PRK08945 90 FGRLDGVLHNAG 101 (247)
T ss_pred hCCCCEEEECCc
Confidence 246788886543
No 489
>PRK07454 short chain dehydrogenase; Provisional
Probab=73.54 E-value=27 Score=26.71 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=45.0
Q ss_pred CcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957 2 TSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC 67 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~ 67 (201)
+++|-.|+ +|.++..+++ .|. +|++++.+++..+...+.....+ .++.++.+|+.+.. + ..+.
T Consensus 7 k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 7 PRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46677774 5655555544 466 89999998876665555444332 36778889987632 1 0135
Q ss_pred eeEEEeccc
Q 028957 68 FDVVIEKAT 76 (201)
Q Consensus 68 ~D~v~~~~~ 76 (201)
.|+++.+..
T Consensus 84 id~lv~~ag 92 (241)
T PRK07454 84 PDVLINNAG 92 (241)
T ss_pred CCEEEECCC
Confidence 788886544
No 490
>PRK06128 oxidoreductase; Provisional
Probab=73.53 E-value=45 Score=26.67 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=55.7
Q ss_pred CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHH--HHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----C
Q 028957 1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAV--AVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----S 64 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~--~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 64 (201)
++++|-.|+. |.++..++ +.|. +|+.+..+.+ ..+...+.+...+ .++.++..|+.+.. + .
T Consensus 55 ~k~vlITGas-~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 55 GRKALITGAD-SGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG-RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCEEEEecCC-CcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3567777754 44444444 4466 7777665432 2333333333333 25677888887531 0 1
Q ss_pred CCceeEEEeccccceeeecCCCCCCCCCccHHH-----------HHHHHHHHhhcccCCcEEEEEe
Q 028957 65 NDCFDVVIEKATMEVLFVNSGDPWNPQPETVTK-----------VMAMLEGVHRVLKPDGLFISVS 119 (201)
Q Consensus 65 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~ 119 (201)
.+..|+++.+...... ..++.+ ...++ ...+++.+.+.++++|.++.+.
T Consensus 132 ~g~iD~lV~nAg~~~~----~~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQTA----VKDIAD--ITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccCC----CCChhh--CCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 2457888876543211 001100 01111 2245566667777888877653
No 491
>PRK06181 short chain dehydrogenase; Provisional
Probab=73.53 E-value=24 Score=27.34 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=45.4
Q ss_pred CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957 1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 66 (201)
+++||-.|+ +|.++..++ ..+. +|++++.++...+.+.+.+...+ .++.++..|+.+.. + ..+
T Consensus 1 ~~~vlVtGa-sg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 1 GKVVIITGA-SEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHG-GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CCEEEEecC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356776664 455555543 4465 89999998777666655554433 36778888887632 0 113
Q ss_pred ceeEEEeccc
Q 028957 67 CFDVVIEKAT 76 (201)
Q Consensus 67 ~~D~v~~~~~ 76 (201)
..|+|+.+..
T Consensus 78 ~id~vi~~ag 87 (263)
T PRK06181 78 GIDILVNNAG 87 (263)
T ss_pred CCCEEEECCC
Confidence 5788886543
No 492
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=73.41 E-value=4.9 Score=32.73 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhcccCCcEEEEEecCC
Q 028957 96 TKVMAMLEGVHRVLKPDGLFISVSFGQ 122 (201)
Q Consensus 96 ~~~~~~l~~~~~~L~~gG~l~~~~~~~ 122 (201)
..++.+|....++|+|||++.+++|..
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 568899999999999999999998864
No 493
>PRK06139 short chain dehydrogenase; Provisional
Probab=73.22 E-value=22 Score=29.19 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=46.7
Q ss_pred CcEEEecCCCChhhHHH----HhcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCCc
Q 028957 2 TSVLELGCGNSRLSEGL----YNDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SNDC 67 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~ 67 (201)
++||-.|++ |.++..+ ++.|. +|+.++.+++.++...+.+...+ .++.++..|+.+.. . ..+.
T Consensus 8 k~vlITGAs-~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 8 AVVVITGAS-SGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALG-AEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CEEEEcCCC-CHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 466766664 4444444 44566 89999999888877766665544 25677788876521 0 1256
Q ss_pred eeEEEecccc
Q 028957 68 FDVVIEKATM 77 (201)
Q Consensus 68 ~D~v~~~~~l 77 (201)
.|+++.+...
T Consensus 85 iD~lVnnAG~ 94 (330)
T PRK06139 85 IDVWVNNVGV 94 (330)
T ss_pred CCEEEECCCc
Confidence 8998876543
No 494
>PRK06196 oxidoreductase; Provisional
Probab=73.20 E-value=24 Score=28.47 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=43.4
Q ss_pred CCcEEEecCCCChhhHHHHh----cCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC----------CCCC
Q 028957 1 MTSVLELGCGNSRLSEGLYN----DGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP----------FSND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~~----~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 66 (201)
+++||-.|++ |.++..+++ .|. +|++++.+++..+.+.+.+ .++.++.+|+.+.. -..+
T Consensus 26 ~k~vlITGas-ggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l-----~~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 26 GKTAIVTGGY-SGLGLETTRALAQAGA-HVIVPARRPDVAREALAGI-----DGVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----hhCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 3567777754 555555544 466 8999998877665544333 14677888887632 0124
Q ss_pred ceeEEEecccc
Q 028957 67 CFDVVIEKATM 77 (201)
Q Consensus 67 ~~D~v~~~~~l 77 (201)
..|+++.+...
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 68998876543
No 495
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=72.89 E-value=13 Score=30.11 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=51.5
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcc----cCCCCCCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEAD----MLDLPFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d----~~~~~~~~~~~D~v~~~ 74 (201)
+.+||-.|+|+ |..+..+++. +..++++++.+++..+.+++ .+...+-....+ +... .+...+|+++..
T Consensus 168 ~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~i~~~-~~~~~~dvvld~ 242 (340)
T cd05284 168 GSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGADHVLNASDDVVEEVREL-TGGRGADAVIDF 242 (340)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCcEEEcCCccHHHHHHHH-hCCCCCCEEEEc
Confidence 35678888654 4444455555 42388888888876665533 222111111111 1111 122458988842
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.. -...++...+.|+++|+++....
T Consensus 243 ~g---------------------~~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 243 VG---------------------SDETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred CC---------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 11 02356777888999999887653
No 496
>PLN02702 L-idonate 5-dehydrogenase
Probab=72.85 E-value=44 Score=27.49 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=52.4
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEE---cccCC----C-CCCCCceeE
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEVKVLE---ADMLD----L-PFSNDCFDV 70 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~---~d~~~----~-~~~~~~~D~ 70 (201)
+.+||-.|+|. |..+..+++. |...+++++.++...+.+++. +.+.+.... .+... + ....+.+|+
T Consensus 182 g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 257 (364)
T PLN02702 182 ETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIEDVESEVEEIQKAMGGGIDV 257 (364)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccccHHHHHHHHhhhcCCCCCE
Confidence 34677777643 5555555555 554688999887776655542 222211111 11110 1 011245788
Q ss_pred EEeccccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 71 VIEKATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
|+.... + ...+....+.|+++|+++....
T Consensus 258 vid~~g-----------------~----~~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 258 SFDCVG-----------------F----NKTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred EEECCC-----------------C----HHHHHHHHHHHhcCCEEEEEcc
Confidence 874211 0 2356778889999999886653
No 497
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=72.62 E-value=50 Score=26.80 Aligned_cols=94 Identities=22% Similarity=0.284 Sum_probs=49.9
Q ss_pred CCcEEEecCCC-ChhhHHHHhc-CCCeEEEEECCHHHHHHHHHHHhhcCCCce-EEEEccc---CCCCCCCCceeEEEec
Q 028957 1 MTSVLELGCGN-SRLSEGLYND-GITAITCIDLSAVAVEKMQERLLLKGYKEV-KVLEADM---LDLPFSNDCFDVVIEK 74 (201)
Q Consensus 1 ~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i-~~~~~d~---~~~~~~~~~~D~v~~~ 74 (201)
|.+||-.|+|. |..+..+++. |..++++++-+++....+++. +.+.+ .....+. ... ...+.+|+++..
T Consensus 164 g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld~ 238 (341)
T cd05281 164 GKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREEDVVEVKSV-TDGTGVDVVLEM 238 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccccHHHHHHH-cCCCCCCEEEEC
Confidence 35666666654 5565666665 433688887666655554432 21111 0111111 111 223468888852
Q ss_pred cccceeeecCCCCCCCCCccHHHHHHHHHHHhhcccCCcEEEEEec
Q 028957 75 ATMEVLFVNSGDPWNPQPETVTKVMAMLEGVHRVLKPDGLFISVSF 120 (201)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 120 (201)
.. ....+..+.+.|+++|+++....
T Consensus 239 ~g---------------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 239 SG---------------------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred CC---------------------CHHHHHHHHHHhccCCEEEEEcc
Confidence 11 12356677788999999886643
No 498
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=72.60 E-value=6 Score=30.94 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=28.9
Q ss_pred CcEEEecCCCChhhHHHHhcCCCeEEEEECCHHHHHHHHHHH
Q 028957 2 TSVLELGCGNSRLSEGLYNDGITAITCIDLSAVAVEKMQERL 43 (201)
Q Consensus 2 ~~vLDlG~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~~ 43 (201)
.+++|+-||+|..+..+...+. .|+.-|+++..+...+..+
T Consensus 22 ~~~vepF~G~g~V~~~~~~~~~-~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 22 KTYVEPFAGGGSVFLNLKQPGK-RVIINDINPDLINFWKAVL 62 (260)
T ss_dssp SEEEETT-TTSHHHHCC---SS-EEEEEES-HHHHHHHHHHH
T ss_pred CEEEEEecchhHHHHHhccccc-ceeeeechHHHHHHHHHHH
Confidence 5789999999999987766444 8999999998776665433
No 499
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=72.59 E-value=27 Score=26.73 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=44.5
Q ss_pred CCcEEEecCCCChhhHHHH----hcCCCeEEEEECCHHHHHHHHHHHhhcCCCceEEEEcccCCCC-----C-----CCC
Q 028957 1 MTSVLELGCGNSRLSEGLY----NDGITAITCIDLSAVAVEKMQERLLLKGYKEVKVLEADMLDLP-----F-----SND 66 (201)
Q Consensus 1 ~~~vLDlG~G~G~~~~~l~----~~~~~~v~~vD~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 66 (201)
++++|-.|++ |.++..++ +.+. +|++++.+.+..+.+.+.+...+ .++.++..|+.+.. + ..+
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3567777754 55555444 4455 89999998877766665554432 36788888887532 0 013
Q ss_pred ceeEEEecc
Q 028957 67 CFDVVIEKA 75 (201)
Q Consensus 67 ~~D~v~~~~ 75 (201)
..|+++.+.
T Consensus 80 ~~d~vi~~a 88 (250)
T TIGR03206 80 PVDVLVNNA 88 (250)
T ss_pred CCCEEEECC
Confidence 568887654
No 500
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.53 E-value=40 Score=27.22 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=28.8
Q ss_pred CcEEEecCCC--ChhhHHHHhcCCCeEEEEECCHHHHHHHHHH
Q 028957 2 TSVLELGCGN--SRLSEGLYNDGITAITCIDLSAVAVEKMQER 42 (201)
Q Consensus 2 ~~vLDlG~G~--G~~~~~l~~~~~~~v~~vD~~~~~~~~~~~~ 42 (201)
++|.=+|+|. +.++..++..+. +|+++|.+++.++.+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 3567788875 345555556666 899999999888877764
Done!