BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028958
         (201 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
           Endoprotease From Cucumis Melo L
 pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
           Endoprotease From Cucumis Melo L
          Length = 621

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 12/78 (15%)

Query: 124 TTRSWDFLXXXXXXXXXXXXXXXHKYHNISSDVIIGIIDTGIWPESPSFKDRGMSEIPSK 183
           TTRSWDFL                +   + S++++G++DTGIWPESPSF D G S  P K
Sbjct: 1   TTRSWDFLGFPLTVP---------RRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPK 51

Query: 184 WKGVCMDSHDFKKSNCNR 201
           WKG C  S++F+   CNR
Sbjct: 52  WKGTCETSNNFR---CNR 66


>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3
 pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3
 pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3 In Complex With A Chloromethylketone Inhibitor
 pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3 In Complex With A Chloromethylketone Inhibitor
          Length = 649

 Score = 70.5 bits (171), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 35/50 (70%)

Query: 152 ISSDVIIGIIDTGIWPESPSFKDRGMSEIPSKWKGVCMDSHDFKKSNCNR 201
           +  DVI+ ++D+GIWPES SF+D GM EIP +WKG+C     F  S CNR
Sbjct: 22  LGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNR 71


>pdb|3K66|A Chain A, X-Ray Crystal Structure Of The E2 Domain Of C. Elegans
           Apl-1
 pdb|3K6B|A Chain A, X-Ray Crystal Structure Of The E2 Domain Of Apl-1 From C.
           Elegans, In Complex With Sucrose Octasulfate (Sos)
          Length = 239

 Score = 28.1 bits (61), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 64  LQLLSSIIPSEESDRISLIHHYKHSFKGFS 93
           LQ L + I +EE DR+  ++ Y+H  K  S
Sbjct: 127 LQSLKAYIRAEEKDRMHTLNRYRHLLKADS 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,959,057
Number of Sequences: 62578
Number of extensions: 162615
Number of successful extensions: 298
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 7
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)