Query 028958
Match_columns 201
No_of_seqs 180 out of 1346
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05922 Inhibitor_I9: Peptida 99.6 6.5E-15 1.4E-19 104.5 6.1 78 45-123 1-82 (82)
2 KOG1153 Subtilisin-related pro 99.5 4E-14 8.7E-19 128.5 8.0 133 42-176 79-241 (501)
3 cd04852 Peptidases_S8_3 Peptid 99.3 9.2E-13 2E-17 115.2 5.3 77 120-201 1-77 (307)
4 cd04077 Peptidases_S8_PCSK9_Pr 98.3 2.8E-07 6.1E-12 78.2 2.2 43 131-175 1-46 (255)
5 cd07489 Peptidases_S8_5 Peptid 97.8 1.2E-05 2.5E-10 70.5 2.0 31 143-175 4-34 (312)
6 cd04059 Peptidases_S8_Protein_ 97.7 1.2E-05 2.6E-10 69.5 1.4 32 143-176 30-61 (297)
7 PTZ00262 subtilisin-like prote 97.6 2.2E-05 4.8E-10 75.4 1.8 26 150-175 312-337 (639)
8 cd04843 Peptidases_S8_11 Pepti 97.5 6.9E-05 1.5E-09 65.2 3.1 33 143-176 6-38 (277)
9 KOG3526 Subtilisin-like propro 97.5 0.00025 5.5E-09 64.5 6.5 144 15-174 10-181 (629)
10 cd07494 Peptidases_S8_10 Pepti 97.5 5.9E-05 1.3E-09 66.3 2.3 33 142-177 11-43 (298)
11 cd07484 Peptidases_S8_Thermita 97.4 4.7E-05 1E-09 64.6 1.2 31 142-175 19-49 (260)
12 KOG4266 Subtilisin kexin isozy 97.3 0.00039 8.5E-09 66.6 6.0 125 43-174 49-221 (1033)
13 cd04857 Peptidases_S8_Tripepti 96.5 0.0019 4.2E-08 59.6 2.9 28 146-173 15-42 (412)
14 COG1404 AprE Subtilisin-like s 93.5 0.052 1.1E-06 48.5 2.6 27 150-176 138-164 (508)
15 KOG1114 Tripeptidyl peptidase 92.6 0.087 1.9E-06 53.1 2.7 26 149-174 76-101 (1304)
16 KOG0074 GTP-binding ADP-ribosy 66.3 3.7 8E-05 33.3 1.6 42 112-163 54-95 (185)
17 COG1217 TypA Predicted membran 34.7 29 0.00064 33.2 2.3 19 154-175 66-84 (603)
18 PF10717 ODV-E18: Occlusion-de 28.8 1.3E+02 0.0028 21.9 4.3 8 24-31 41-48 (85)
19 KOG3525 Subtilisin-like propro 22.8 75 0.0016 29.7 2.8 30 143-174 24-53 (431)
20 COG3251 Uncharacterized protei 22.2 50 0.0011 23.2 1.1 16 177-192 29-44 (71)
21 PF11119 DUF2633: Protein of u 22.0 1.2E+02 0.0027 20.5 3.0 23 8-30 8-30 (59)
22 PF09625 VP9: VP9 protein; In 21.6 48 0.001 23.7 1.0 19 37-55 31-49 (79)
No 1
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=99.56 E-value=6.5e-15 Score=104.51 Aligned_cols=78 Identities=31% Similarity=0.445 Sum_probs=58.5
Q ss_pred cEEEEeCCCCCcchhHHHHHHHHHhhCCCC----ccCccceEEEeccceeEEEeecCHHHHHHhhcCCCCeEEEecCCCc
Q 028958 45 PYVVYMGSSSNVGVAELAHLQLLSSIIPSE----ESDRISLIHHYKHSFKGFSAMLTEKEASVLSAGHEKIVSVFPDPVL 120 (201)
Q Consensus 45 ~YIV~lk~~~~~~~~~~~H~~~l~s~l~s~----~~a~~~i~~~Y~~~~nGFaa~Lt~~~l~~L~~~~p~V~~Ve~D~~~ 120 (201)
+|||+|+++.........|.+|+.+++.+. .....++.+.|..+||||+++|+++++++| +++|+|++||||+++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L-~~~p~V~~Ve~D~~v 79 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKL-RKDPGVKSVEPDQVV 79 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHH-HTSTTEEEEEEECEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHH-HcCCCeEEEEeCceE
Confidence 599999998764223677888887654321 123468999999999999999999999999 999999999999998
Q ss_pred ccc
Q 028958 121 KLH 123 (201)
Q Consensus 121 ~l~ 123 (201)
+++
T Consensus 80 ~l~ 82 (82)
T PF05922_consen 80 SLH 82 (82)
T ss_dssp EE-
T ss_pred ecC
Confidence 764
No 2
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4e-14 Score=128.52 Aligned_cols=133 Identities=16% Similarity=0.223 Sum_probs=102.4
Q ss_pred CCCcEEEEeCCCCCcchhHHHHHHHHHhhCCCCcc-----Cc-------------cceEEEec---cceeEEEeecCHHH
Q 028958 42 IPKPYVVYMGSSSNVGVAELAHLQLLSSIIPSEES-----DR-------------ISLIHHYK---HSFKGFSAMLTEKE 100 (201)
Q Consensus 42 ~~~~YIV~lk~~~~~~~~~~~H~~~l~s~l~s~~~-----a~-------------~~i~~~Y~---~~~nGFaa~Lt~~~ 100 (201)
.+..|||.+++++. .+....|..|++..+..... .. ..+.+.|. .+++||...++.+-
T Consensus 79 ~~~~YiV~f~~~~~-q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~ 157 (501)
T KOG1153|consen 79 LPSRYIVVFKPDAS-QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGES 157 (501)
T ss_pred cccceEEEeCCCcc-HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccce
Confidence 57899999997765 35677788888766632110 00 12555554 37999999999999
Q ss_pred HHHhhcCCCCeEEEecCCCccccc-----cccCcchhhhhhhhccc--CCCCCCC--CCCCCCCeEEEEEcCCcccCCCC
Q 028958 101 ASVLSAGHEKIVSVFPDPVLKLHT-----TRSWDFLEAEAEAKATT--STWSSHK--YHNISSDVIIGIIDTGIWPESPS 171 (201)
Q Consensus 101 l~~L~~~~p~V~~Ve~D~~~~l~t-----t~s~~~~Gl~~~~~~~~--~~~~~~~--~~~~G~GV~I~VIDTGI~~~H~~ 171 (201)
+..+ +.+|-++.+++|.+++... +|+.++|||.|+++... -..|..| ...+|+||..||+||||+.+|||
T Consensus 158 v~~i-~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~d 236 (501)
T KOG1153|consen 158 VCSI-RSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPD 236 (501)
T ss_pred eeee-ccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccc
Confidence 9999 9999999999999987653 78889999999986321 1234433 46689999999999999999999
Q ss_pred CcCCC
Q 028958 172 FKDRG 176 (201)
Q Consensus 172 F~grG 176 (201)
|+||-
T Consensus 237 FegRa 241 (501)
T KOG1153|consen 237 FEGRA 241 (501)
T ss_pred cccce
Confidence 99994
No 3
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.34 E-value=9.2e-13 Score=115.21 Aligned_cols=77 Identities=43% Similarity=0.785 Sum_probs=63.9
Q ss_pred ccccccccCcchhhhhhhhcccCCCCCCCCCCCCCCeEEEEEcCCcccCCCCCcCCCCCCCCCCceeeecCCCCCCCCCC
Q 028958 120 LKLHTTRSWDFLEAEAEAKATTSTWSSHKYHNISSDVIIGIIDTGIWPESPSFKDRGMSEIPSKWKGVCMDSHDFKKSNC 199 (201)
Q Consensus 120 ~~l~tt~s~~~~Gl~~~~~~~~~~~~~~~~~~~G~GV~I~VIDTGI~~~H~~F~grG~~~~p~~w~G~C~~~~~f~~~~C 199 (201)
++++++++|.|+|+...-. ..+|.. ...|+||+|+||||||+++||+|.+++..+++..|.|.|+.+..+....|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWG---GSLLGA--ANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSC 75 (307)
T ss_pred CCccccCCHHHcCCCCCCC---cccccc--cCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCc
Confidence 4788999999999975421 124555 78899999999999999999999999998999999999999987765556
Q ss_pred CC
Q 028958 200 NR 201 (201)
Q Consensus 200 N~ 201 (201)
|+
T Consensus 76 ~~ 77 (307)
T cd04852 76 NN 77 (307)
T ss_pred CC
Confidence 53
No 4
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=98.30 E-value=2.8e-07 Score=78.20 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=32.8
Q ss_pred hhhhhhhhcc--cCC-CCCCCCCCCCCCeEEEEEcCCcccCCCCCcCC
Q 028958 131 LEAEAEAKAT--TST-WSSHKYHNISSDVIIGIIDTGIWPESPSFKDR 175 (201)
Q Consensus 131 ~Gl~~~~~~~--~~~-~~~~~~~~~G~GV~I~VIDTGI~~~H~~F~gr 175 (201)
|||+++++.. ... +|.. ..+|+||+|+||||||+++||+|.++
T Consensus 1 w~l~~~~~~~~~~~~~~~~~--~~~G~gv~VaViDsGi~~~h~~~~~~ 46 (255)
T cd04077 1 WGLDRISQRDLPLDGTYYYD--SSTGSGVDVYVLDTGIRTTHVEFGGR 46 (255)
T ss_pred CCccccCCCCCCCCCceEec--CCCCCCcEEEEEcCCCCCCChhhhCC
Confidence 6787776521 011 3333 67899999999999999999999987
No 5
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.76 E-value=1.2e-05 Score=70.45 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCCCeEEEEEcCCcccCCCCCcCC
Q 028958 143 TWSSHKYHNISSDVIIGIIDTGIWPESPSFKDR 175 (201)
Q Consensus 143 ~~~~~~~~~~G~GV~I~VIDTGI~~~H~~F~gr 175 (201)
.+|.. +.+|+||+|+||||||+.+||+|.++
T Consensus 4 ~~~~~--g~tG~gv~VaViDsGid~~hp~l~~~ 34 (312)
T cd07489 4 KLHAE--GITGKGVKVAVVDTGIDYTHPALGGC 34 (312)
T ss_pred hHHhC--CCCCCCCEEEEEECCCCCCChhhhcC
Confidence 46666 77899999999999999999999864
No 6
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=97.72 E-value=1.2e-05 Score=69.45 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCCCeEEEEEcCCcccCCCCCcCCC
Q 028958 143 TWSSHKYHNISSDVIIGIIDTGIWPESPSFKDRG 176 (201)
Q Consensus 143 ~~~~~~~~~~G~GV~I~VIDTGI~~~H~~F~grG 176 (201)
.+|.. ...|+||+|+||||||+..||+|.++-
T Consensus 30 ~~w~~--g~~G~gv~VaViDtGv~~~h~~l~~~~ 61 (297)
T cd04059 30 PAWEQ--GITGKGVTVAVVDDGLEITHPDLKDNY 61 (297)
T ss_pred HHHhC--CCCCcceEEEEEeCCcccCCHhHhhcc
Confidence 47776 789999999999999999999998863
No 7
>PTZ00262 subtilisin-like protease; Provisional
Probab=97.62 E-value=2.2e-05 Score=75.45 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCCCCCeEEEEEcCCcccCCCCCcCC
Q 028958 150 HNISSDVIIGIIDTGIWPESPSFKDR 175 (201)
Q Consensus 150 ~~~G~GV~I~VIDTGI~~~H~~F~gr 175 (201)
...|+||+||||||||+.+||||.++
T Consensus 312 ~~~g~gV~VAVIDTGID~~HPDL~~n 337 (639)
T PTZ00262 312 PHEVNDTNICVIDSGIDYNHPDLHDN 337 (639)
T ss_pred ccCCCCcEEEEEccCCCCCChhhhhh
Confidence 45699999999999999999999864
No 8
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.50 E-value=6.9e-05 Score=65.25 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCeEEEEEcCCcccCCCCCcCCC
Q 028958 143 TWSSHKYHNISSDVIIGIIDTGIWPESPSFKDRG 176 (201)
Q Consensus 143 ~~~~~~~~~~G~GV~I~VIDTGI~~~H~~F~grG 176 (201)
..|+.. ...|+||+|+||||||+++||||.++-
T Consensus 6 ~aw~~~-~g~G~gV~VaviDtGid~~Hpdl~~~~ 38 (277)
T cd04843 6 YAWTKP-GGSGQGVTFVDIEQGWNLNHEDLVGNG 38 (277)
T ss_pred HHHHhc-CCCCCcEEEEEecCCCCCCChhhcccc
Confidence 457651 334899999999999999999999874
No 9
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00025 Score=64.50 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=76.5
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCCCCCCCCCcEEEEeCCCCCcchhHHHHHHHHH-hhCCCCccCccceEEEeccceeEEE
Q 028958 15 LFPFLSLHCLVVIASSSSSSSSSSSNQIPKPYVVYMGSSSNVGVAELAHLQLLS-SIIPSEESDRISLIHHYKHSFKGFS 93 (201)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YIV~lk~~~~~~~~~~~H~~~l~-s~l~s~~~a~~~i~~~Y~~~~nGFa 93 (201)
+-+||+|+|+.+.+..+ ..-....|+|+|+++... ..+|.-.-+ .+..........-.|.|.+ ++..
T Consensus 10 ~a~fl~lf~~~~gag~~-------~~vftnhflv~l~~g~g~---~~ah~va~~hgf~nrg~~~a~d~eyhf~h--~~l~ 77 (629)
T KOG3526|consen 10 IAVFLSLFCVMIGAGEA-------VDVFTNHFLVHLKEGGGL---EDAHRVAKRHGFINRGQVAASDNEYHFVH--PALV 77 (629)
T ss_pred HHHHHHHHHHHhccccC-------cceeeeeEEEEEeccCCh---HHHHHHHHHhCccccccccccCceeeeec--cccc
Confidence 34678889998887753 233467899999988542 333332111 1111111111223444432 2222
Q ss_pred ---eecCHHHHHHhhcCCCCeEEEecCCCcccc------------------ccccCcch------hhhhhhhcccCCCCC
Q 028958 94 ---AMLTEKEASVLSAGHEKIVSVFPDPVLKLH------------------TTRSWDFL------EAEAEAKATTSTWSS 146 (201)
Q Consensus 94 ---a~Lt~~~l~~L~~~~p~V~~Ve~D~~~~l~------------------tt~s~~~~------Gl~~~~~~~~~~~~~ 146 (201)
-+-+..--++| .++|.|..+++-..+.-. -+..|-.. |-.|.+ ..-...|.
T Consensus 78 har~rrsl~h~~~l-~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rld-lnv~~awa 155 (629)
T KOG3526|consen 78 HARTRRSLGHHAKL-HNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLD-LNVAEAWA 155 (629)
T ss_pred hhhhhcccchhhhh-ccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCccccc-ccHHHHHh
Confidence 11122234677 888888877664433210 01111000 111111 00023577
Q ss_pred CCCCCCCCCeEEEEEcCCcccCCCCCcC
Q 028958 147 HKYHNISSDVIIGIIDTGIWPESPSFKD 174 (201)
Q Consensus 147 ~~~~~~G~GV~I~VIDTGI~~~H~~F~g 174 (201)
. +.+|++|+++|+|-||+..|||+.-
T Consensus 156 ~--g~tgknvttaimddgvdymhpdlk~ 181 (629)
T KOG3526|consen 156 L--GYTGKNVTTAIMDDGVDYMHPDLKS 181 (629)
T ss_pred h--cccCCCceEEeecCCchhcCcchhc
Confidence 6 8899999999999999999999863
No 10
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.48 E-value=5.9e-05 Score=66.31 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCcccCCCCCcCCCC
Q 028958 142 STWSSHKYHNISSDVIIGIIDTGIWPESPSFKDRGM 177 (201)
Q Consensus 142 ~~~~~~~~~~~G~GV~I~VIDTGI~~~H~~F~grG~ 177 (201)
..+|.. +.+|+||+|+||||||+.+|| |.++++
T Consensus 11 ~~~~~~--G~~G~Gv~VaViDTGv~~~h~-~~~~~~ 43 (298)
T cd07494 11 TRVHQR--GITGRGVRVAMVDTGFYAHPF-FESRGY 43 (298)
T ss_pred hHHHhc--CCCCCCcEEEEEeCCCcCCch-hhcCCc
Confidence 357777 788999999999999999998 888765
No 11
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=97.44 E-value=4.7e-05 Score=64.65 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCcccCCCCCcCC
Q 028958 142 STWSSHKYHNISSDVIIGIIDTGIWPESPSFKDR 175 (201)
Q Consensus 142 ~~~~~~~~~~~G~GV~I~VIDTGI~~~H~~F~gr 175 (201)
...|.. . .|+||+|+||||||+++||+|.+.
T Consensus 19 ~~~~~~--~-~G~gv~I~viDsGi~~~h~~l~~~ 49 (260)
T cd07484 19 PKAWDI--T-GGSGVTVAVVDTGVDPTHPDLLKV 49 (260)
T ss_pred HHHHhh--c-CCCCCEEEEEeCCCCCCCcccccC
Confidence 457776 4 899999999999999999998543
No 12
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00039 Score=66.61 Aligned_cols=125 Identities=19% Similarity=0.245 Sum_probs=72.7
Q ss_pred CCcEEEEeCCCCCcchhHHHHHHHHHhhCCCCcc------CccceEEEeccceeEEEee-----cCHHHHHHhhcCCCCe
Q 028958 43 PKPYVVYMGSSSNVGVAELAHLQLLSSIIPSEES------DRISLIHHYKHSFKGFSAM-----LTEKEASVLSAGHEKI 111 (201)
Q Consensus 43 ~~~YIV~lk~~~~~~~~~~~H~~~l~s~l~s~~~------a~~~i~~~Y~~~~nGFaa~-----Lt~~~l~~L~~~~p~V 111 (201)
..+|||+++.--. ...|..++++-+.+.+- .+...-..|-.-|.-.-.+ ..+-+++.| +.+|+|
T Consensus 49 e~EyIv~F~~y~~----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierL-e~hp~v 123 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERL-EMHPDV 123 (1033)
T ss_pred cceeEEEeccccc----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeeh-hcCCCc
Confidence 4569999986432 34566777776653221 1111122232222222111 234468899 999999
Q ss_pred EEEecCCCcccc------------ccccCcch-hhh---------------h----h-hh----cccCCCCCCCCCCCCC
Q 028958 112 VSVFPDPVLKLH------------TTRSWDFL-EAE---------------A----E-AK----ATTSTWSSHKYHNISS 154 (201)
Q Consensus 112 ~~Ve~D~~~~l~------------tt~s~~~~-Gl~---------------~----~-~~----~~~~~~~~~~~~~~G~ 154 (201)
+.|.|-+.+-.. .|..-.++ |.. | + .| ..++-+|.. +.+|+
T Consensus 124 k~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~--GyTGa 201 (1033)
T KOG4266|consen 124 KVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKK--GYTGA 201 (1033)
T ss_pred eeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhc--cccCC
Confidence 999998766321 01100111 100 0 0 01 013457888 99999
Q ss_pred CeEEEEEcCCcccCCCCCcC
Q 028958 155 DVIIGIIDTGIWPESPSFKD 174 (201)
Q Consensus 155 GV~I~VIDTGI~~~H~~F~g 174 (201)
+|+++|.|||+..+||-|+.
T Consensus 202 ~VkvAiFDTGl~~~HPHFrn 221 (1033)
T KOG4266|consen 202 KVKVAIFDTGLRADHPHFRN 221 (1033)
T ss_pred ceEEEEeecccccCCccccc
Confidence 99999999999999999974
No 13
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=96.48 E-value=0.0019 Score=59.57 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=23.5
Q ss_pred CCCCCCCCCCeEEEEEcCCcccCCCCCc
Q 028958 146 SHKYHNISSDVIIGIIDTGIWPESPSFK 173 (201)
Q Consensus 146 ~~~~~~~G~GV~I~VIDTGI~~~H~~F~ 173 (201)
.+++..-|+||+|+|+||||||.||-++
T Consensus 15 ~~~p~~dgr~v~iai~dtgvd~~~~~lq 42 (412)
T cd04857 15 QKYPEYDGRGVLIAILDTGVDPGAPGLQ 42 (412)
T ss_pred HHCcCCCCCCcEEEEecCCCCCCCCccc
Confidence 3334567999999999999999999883
No 14
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.052 Score=48.54 Aligned_cols=27 Identities=22% Similarity=0.387 Sum_probs=24.6
Q ss_pred CCCCCCeEEEEEcCCcccCCCCCcCCC
Q 028958 150 HNISSDVIIGIIDTGIWPESPSFKDRG 176 (201)
Q Consensus 150 ~~~G~GV~I~VIDTGI~~~H~~F~grG 176 (201)
...|+||+++||||||+..|++|.++.
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~ 164 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSA 164 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhccc
Confidence 567999999999999999999998863
No 15
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.087 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.1
Q ss_pred CCCCCCCeEEEEEcCCcccCCCCCcC
Q 028958 149 YHNISSDVIIGIIDTGIWPESPSFKD 174 (201)
Q Consensus 149 ~~~~G~GV~I~VIDTGI~~~H~~F~g 174 (201)
+.+-|+||.|+|+|||+||.-|-..-
T Consensus 76 PeYDGRgV~IaIlDtGvDP~apGl~v 101 (1304)
T KOG1114|consen 76 PEYDGRGVTIAILDTGVDPSAPGLQV 101 (1304)
T ss_pred cCCCCCceEEEEeecCCCCCCCCceE
Confidence 35679999999999999999886653
No 16
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=66.31 E-value=3.7 Score=33.25 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=26.2
Q ss_pred EEEecCCCccccccccCcchhhhhhhhcccCCCCCCCCCCCCCCeEEEEEcC
Q 028958 112 VSVFPDPVLKLHTTRSWDFLEAEAEAKATTSTWSSHKYHNISSDVIIGIIDT 163 (201)
Q Consensus 112 ~~Ve~D~~~~l~tt~s~~~~Gl~~~~~~~~~~~~~~~~~~~G~GV~I~VIDT 163 (201)
+.|+-|..+++. -|+.-|-..| +++|..| +.--+..|||||+
T Consensus 54 k~v~~~g~f~Ln---vwDiGGqr~I-----RpyWsNY--yenvd~lIyVIDS 95 (185)
T KOG0074|consen 54 KKVEYDGTFHLN---VWDIGGQRGI-----RPYWSNY--YENVDGLIYVIDS 95 (185)
T ss_pred EEEeecCcEEEE---EEecCCcccc-----chhhhhh--hhccceEEEEEeC
Confidence 566667766664 2443343322 5789873 3355889999995
No 17
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=34.69 E-value=29 Score=33.23 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=17.0
Q ss_pred CCeEEEEEcCCcccCCCCCcCC
Q 028958 154 SDVIIGIIDTGIWPESPSFKDR 175 (201)
Q Consensus 154 ~GV~I~VIDTGI~~~H~~F~gr 175 (201)
+|+.|-|+|| |.|.||+|.
T Consensus 66 ~~~~INIvDT---PGHADFGGE 84 (603)
T COG1217 66 NGTRINIVDT---PGHADFGGE 84 (603)
T ss_pred CCeEEEEecC---CCcCCccch
Confidence 3699999999 999999984
No 18
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=28.79 E-value=1.3e+02 Score=21.90 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=3.5
Q ss_pred hhhhhcCC
Q 028958 24 LVVIASSS 31 (201)
Q Consensus 24 ~~~~~~~~ 31 (201)
++++++++
T Consensus 41 ImlfqsSS 48 (85)
T PF10717_consen 41 IMLFQSSS 48 (85)
T ss_pred HHHHhccC
Confidence 34445443
No 19
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=22.80 E-value=75 Score=29.70 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCeEEEEEcCCcccCCCCCcC
Q 028958 143 TWSSHKYHNISSDVIIGIIDTGIWPESPSFKD 174 (201)
Q Consensus 143 ~~~~~~~~~~G~GV~I~VIDTGI~~~H~~F~g 174 (201)
..|.. ..+|.++.+.|+|.||.-.|++-..
T Consensus 24 ~~~~~--~~~g~~~~~~i~ddgl~~~h~~~~~ 53 (431)
T KOG3525|consen 24 NAWCK--GYTGTRVSVTILDDGLECSHPDLRN 53 (431)
T ss_pred ecccc--CCCCCceEEEEeeccccccCccccc
Confidence 46776 7889999999999999999987643
No 20
>COG3251 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.22 E-value=50 Score=23.18 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.4
Q ss_pred CCCCCCCceeeecCCC
Q 028958 177 MSEIPSKWKGVCMDSH 192 (201)
Q Consensus 177 ~~~~p~~w~G~C~~~~ 192 (201)
+.++|++|+-+|+.+.
T Consensus 29 ~~~iPaGW~~v~~~~s 44 (71)
T COG3251 29 FCAIPAGWRVVHEPGS 44 (71)
T ss_pred ccCCCccceeeccccc
Confidence 3569999999999875
No 21
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=21.98 E-value=1.2e+02 Score=20.54 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhhcC
Q 028958 8 NSMAFLLLFPFLSLHCLVVIASS 30 (201)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~ 30 (201)
+..-++||++|++|+.-++..+.
T Consensus 8 ~mtriVLLISfiIlfgRl~Y~~I 30 (59)
T PF11119_consen 8 RMTRIVLLISFIILFGRLIYSAI 30 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888899998886665553
No 22
>PF09625 VP9: VP9 protein; InterPro: IPR018587 VP9 is a protein containing a ferredoxin fold. Two dimers come together to form one asymmetric unit which possesses a DNA recognition fold and specific metal binding sites possibly for zinc. It is postulated that being a non-structural protein VP9 is involved in the transcriptional regulation of the White spot syndrome virus (WSSV), from which it comes. WSSV is the major viral pathogen in shrimp aquaculture []. VP9 is found N-terminal to the IPR009766 from INTERPRO. ; PDB: 2ZUG_A 2GJ2_A 2GJI_A.
Probab=21.62 E-value=48 Score=23.73 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=11.5
Q ss_pred CCCCCCCCcEEEEeCCCCC
Q 028958 37 SSSNQIPKPYVVYMGSSSN 55 (201)
Q Consensus 37 ~~~~~~~~~YIV~lk~~~~ 55 (201)
|.+|=..+.|||.|+++..
T Consensus 31 RkSEl~d~~~iV~Lk~~~~ 49 (79)
T PF09625_consen 31 RKSELRDGVYIVQLKKGEV 49 (79)
T ss_dssp EE-SS-TTEEEEEE-TT--
T ss_pred HHhhcccceEEEEEecCCE
Confidence 4455688999999998764
Done!