BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028959
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92797|SYMPK_HUMAN Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2
Length = 1274
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 25 KLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84
K++ LKQV+ ++ + DP+L ++ Q+ VRK +I IE+ + +E L
Sbjct: 51 KITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKL 110
Query: 85 MPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKD 144
+ L LRD + V K+I+ T + ++ +Q+ +V L+E MV
Sbjct: 111 IANLNMLLRDENVNVVKKAILTMTQLY-----KVALQWMVKSRVISELQEACWDMVSAMA 165
Query: 145 AVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFE 181
+ L+ G + A+KF+E ++ + D E
Sbjct: 166 GDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSE 202
>sp|Q80X82|SYMPK_MOUSE Symplekin OS=Mus musculus GN=Sympk PE=1 SV=1
Length = 1284
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 25 KLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84
K++ LKQV+ ++ + DP+L ++ Q+ VRK +I IE+ + +E L
Sbjct: 51 KITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKL 110
Query: 85 MPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKD 144
+ L LRD + V K+I+ T + ++ +Q+ +V L+E MV
Sbjct: 111 IANLNMLLRDENVNVVKKAILTMTQLY-----KVALQWMVKSRVISDLQEACWDMVSSMA 165
Query: 145 AVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFE 181
+ L+ G + A+KF+E ++ + D E
Sbjct: 166 GEIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSE 202
>sp|Q7ZYV9|SYMPK_XENLA Symplekin OS=Xenopus laevis GN=sympk PE=1 SV=1
Length = 1202
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIET 69
L++ A A N K++ LKQV+ ++ + DP+L ++ Q+ VRK ++
Sbjct: 30 LNMAALATND----TKITMLKQVQELIINKDPTLLDNFLDEIIAFQADKSVEVRKIVVNF 85
Query: 70 IEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVE 129
IE+ E L+ L L+D + V KSI+ T + L+ + R E
Sbjct: 86 IEEACKLDNELLIKLIANLHMLLKDENVNVVKKSILTMTQLYKVALQWVA---RSRPPSE 142
Query: 130 RWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFE 181
+ E W + + + LE G + A+KF+E+ ++ + + D E
Sbjct: 143 QQ-ESCWDLVTEMAADIL-LLLESDNDGMRTHAVKFVESLIVTLSPRTADSE 192
>sp|P11067|NIFB_AZOVI FeMo cofactor biosynthesis protein NifB OS=Azotobacter vinelandii
GN=nifB PE=3 SV=1
Length = 502
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 36 LSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPV 87
++ DP + A+++P L+E Q+ P RK LIE + GL+ + IL+ V
Sbjct: 174 INCVDPEIGAKIYPDLLEQQAHPRRQGRKILIEQ-QQKGLEMLVARGILVKV 224
>sp|Q3EDA9|PPR46_ARATH Putative pentatricopeptide repeat-containing protein At1g16830
OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2
Length = 608
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 32 VRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL 75
V G S +P A +LF ++++ SP + SLI+ D+G+
Sbjct: 254 VSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGM 297
>sp|B5XJR1|EFG_STRPZ Elongation factor G OS=Streptococcus pyogenes serotype M49 (strain
NZ131) GN=fusA PE=3 SV=1
Length = 692
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q S E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQESREKLI-EAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|B1W1H9|TATB_STRGG Sec-independent protein translocase protein TatB OS=Streptomyces
griseus subsp. griseus (strain JCM 4626 / NBRC 13350)
GN=tatB PE=3 SV=1
Length = 166
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 28 SLKQVRGILSSADPSLAAELFPYLVELQ---SSPESLVRKSLIETIEDIGLKAMEHS 81
+++++R SA + +EL P + + +P++ VRK L++ +D+GLK + S
Sbjct: 36 TIRKIREFSDSAKEDIRSELGPQFKDFEFEDLNPKTFVRKQLMDGNDDLGLKEIRES 92
>sp|Q9NP91|S6A20_HUMAN Sodium- and chloride-dependent transporter XTRP3 OS=Homo sapiens
GN=SLC6A20 PE=1 SV=1
Length = 592
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 27 SSLKQVRGILSSADPSLAAELFPYL--VELQSSPESLVRKS-LIETIEDIGLKAMEHSSI 83
S+L+QV+G L+SA PS +E+FP + L+S ++ V+ + L + +K ME S +
Sbjct: 331 SNLEQVKGYLASAYPSKYSEMFPQIKNCSLESELDTAVQGTGLAFIVYTEAIKNMEVSQL 390
>sp|Q5WLR5|EFG_BACSK Elongation factor G OS=Bacillus clausii (strain KSM-K16) GN=fusA
PE=3 SV=1
Length = 692
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
Y E +S ESLV +++ E ED+ +K +E + L A +R G V +VCGT
Sbjct: 203 YKDEAESLRESLV-EAVAELDEDLMMKYLEGEELTKDELKAAIRKGTCNVEFYPVVCGTA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1
Length = 536
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 19 HGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDI- 73
H D V +L+ V I++ D L P L+ L SSP+ +RK TI +I
Sbjct: 305 HNDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSPKESIRKEACWTISNIT 364
Query: 74 -GLKAMEHSSI---LMPVLLAFLRDGD 96
G +A + I + PVL+ L+ +
Sbjct: 365 AGNRAQIQAVIDANIFPVLIEILQKAE 391
>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1
Length = 536
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 19 HGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDI- 73
H D V +L+ V I++ D L P L+ L SSP+ +RK TI +I
Sbjct: 305 HNDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSPKESIRKEACWTISNIT 364
Query: 74 -GLKAMEHSSI---LMPVLLAFLRDGD 96
G +A + I + PVL+ L+ +
Sbjct: 365 AGNRAQIQAVIDANIFPVLIEILQKAE 391
>sp|P0DA85|EFG_STRPQ Elongation factor G OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=fus PE=3 SV=1
Length = 692
Score = 30.0 bits (66), Expect = 9.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQEYREKLI-EAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|Q48VB6|EFG_STRPM Elongation factor G OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=fusA PE=3 SV=1
Length = 692
Score = 30.0 bits (66), Expect = 9.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQEYREKLI-EAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|Q1J8I4|EFG_STRPF Elongation factor G OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=fusA PE=3 SV=1
Length = 692
Score = 30.0 bits (66), Expect = 9.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQEYREKLI-EAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|Q1JIM6|EFG_STRPD Elongation factor G OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=fusA PE=3 SV=1
Length = 692
Score = 30.0 bits (66), Expect = 9.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQEYREKLI-EAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|Q1JNH7|EFG_STRPC Elongation factor G OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=fusA PE=3 SV=1
Length = 692
Score = 30.0 bits (66), Expect = 9.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQEYREKLI-EAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|P69948|EFG_STRP8 Elongation factor G OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=fus PE=3 SV=2
Length = 692
Score = 30.0 bits (66), Expect = 9.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQEYREKLI-EAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|Q5XDW4|EFG_STRP6 Elongation factor G OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=fus PE=1 SV=3
Length = 692
Score = 30.0 bits (66), Expect = 9.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQEYREKLI-EAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|P0DA84|EFG_STRP3 Elongation factor G OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=fus PE=3 SV=1
Length = 692
Score = 30.0 bits (66), Expect = 9.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQEYREKLI-EAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|P69946|EFG_STRP1 Elongation factor G OS=Streptococcus pyogenes serotype M1 GN=fus
PE=3 SV=2
Length = 692
Score = 30.0 bits (66), Expect = 9.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQEYREKLI-EAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
>sp|A2RCI2|EFG_STRPG Elongation factor G OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=fusA PE=3 SV=1
Length = 692
Score = 30.0 bits (66), Expect = 9.8, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109
YL + Q E L+ +++ ET ED+ +K +E I L+A +R V ++CG+
Sbjct: 203 YLEQAQEYREKLI-EAVAETDEDLMMKYLEGEKITNDELIAGIRKATINVEFFPVLCGSA 261
Query: 110 F 110
F
Sbjct: 262 F 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,683,641
Number of Sequences: 539616
Number of extensions: 2529187
Number of successful extensions: 8095
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 8088
Number of HSP's gapped (non-prelim): 31
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)