Query 028959
Match_columns 201
No_of_seqs 105 out of 112
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11935 DUF3453: Domain of un 99.9 1.2E-25 2.6E-30 193.6 9.1 98 91-199 1-98 (239)
2 KOG1895 mRNA cleavage and poly 99.8 6.3E-19 1.4E-23 174.6 11.8 147 28-177 2-148 (957)
3 PF05918 API5: Apoptosis inhib 97.2 0.0016 3.4E-08 63.0 9.0 111 38-170 51-162 (556)
4 PRK09687 putative lyase; Provi 97.0 0.041 8.9E-07 48.6 15.5 155 8-167 54-217 (280)
5 PF01602 Adaptin_N: Adaptin N 97.0 0.0054 1.2E-07 56.8 9.8 99 9-110 80-179 (526)
6 PF13646 HEAT_2: HEAT repeats; 96.9 0.0057 1.2E-07 43.2 7.0 57 48-110 1-58 (88)
7 COG5096 Vesicle coat complex, 96.6 0.029 6.2E-07 56.2 12.4 105 8-113 89-196 (757)
8 PF12717 Cnd1: non-SMC mitotic 96.3 0.026 5.7E-07 46.2 8.6 95 59-174 1-95 (178)
9 PTZ00429 beta-adaptin; Provisi 96.1 0.16 3.4E-06 51.0 14.4 90 18-110 115-206 (746)
10 PF01602 Adaptin_N: Adaptin N 96.0 0.031 6.7E-07 51.8 8.2 109 38-169 71-179 (526)
11 PF12717 Cnd1: non-SMC mitotic 95.7 0.11 2.5E-06 42.4 9.4 86 24-110 4-90 (178)
12 PF12348 CLASP_N: CLASP N term 95.6 0.1 2.2E-06 43.4 9.1 143 9-174 8-163 (228)
13 cd00020 ARM Armadillo/beta-cat 95.5 0.16 3.6E-06 36.7 8.9 90 21-110 20-118 (120)
14 PF13646 HEAT_2: HEAT repeats; 95.4 0.13 2.8E-06 36.1 7.8 82 12-106 4-86 (88)
15 cd00020 ARM Armadillo/beta-cat 95.1 0.072 1.6E-06 38.7 5.9 104 47-167 8-116 (120)
16 KOG2956 CLIP-associating prote 95.1 0.6 1.3E-05 44.7 13.2 111 5-115 284-403 (516)
17 COG5096 Vesicle coat complex, 95.1 0.18 3.9E-06 50.6 10.2 95 17-113 28-157 (757)
18 PTZ00429 beta-adaptin; Provisi 94.8 0.8 1.7E-05 46.1 14.0 94 8-105 33-127 (746)
19 PF12530 DUF3730: Protein of u 94.8 1.6 3.5E-05 37.4 14.2 109 8-118 38-157 (234)
20 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.23 5E-06 37.4 6.5 62 42-103 23-88 (97)
21 PRK09687 putative lyase; Provi 94.0 0.51 1.1E-05 41.7 9.6 97 7-110 89-186 (280)
22 PF13513 HEAT_EZ: HEAT-like re 93.9 0.15 3.3E-06 33.4 4.7 50 61-110 2-55 (55)
23 PF12830 Nipped-B_C: Sister ch 93.6 0.25 5.4E-06 41.0 6.5 70 42-111 4-73 (187)
24 PF10508 Proteasom_PSMB: Prote 93.3 2.8 6E-05 40.0 14.0 87 24-110 53-146 (503)
25 KOG1058 Vesicle coat complex C 92.8 0.6 1.3E-05 47.1 8.8 99 13-113 25-164 (948)
26 PF10274 ParcG: Parkin co-regu 91.8 0.64 1.4E-05 39.2 6.7 69 42-110 38-107 (183)
27 PF02985 HEAT: HEAT repeat; I 91.7 0.29 6.3E-06 28.9 3.4 27 48-74 2-28 (31)
28 PF10363 DUF2435: Protein of u 91.7 0.78 1.7E-05 34.3 6.4 77 47-123 4-87 (92)
29 PF10508 Proteasom_PSMB: Prote 91.3 6.3 0.00014 37.6 13.6 105 6-111 75-188 (503)
30 PF12765 Cohesin_HEAT: HEAT re 90.6 0.26 5.6E-06 31.6 2.5 35 36-70 6-42 (42)
31 PF12348 CLASP_N: CLASP N term 90.5 8.2 0.00018 31.9 12.2 72 43-114 127-208 (228)
32 PF02985 HEAT: HEAT repeat; I 90.0 0.55 1.2E-05 27.7 3.5 30 84-113 1-30 (31)
33 KOG1525 Sister chromatid cohes 89.6 0.4 8.6E-06 50.7 4.3 144 12-174 305-451 (1266)
34 KOG2011 Sister chromatid cohes 88.3 4 8.6E-05 42.6 10.2 126 25-167 262-395 (1048)
35 PF05918 API5: Apoptosis inhib 88.0 3.7 8E-05 40.1 9.4 131 27-167 3-140 (556)
36 KOG1020 Sister chromatid cohes 88.0 4.1 9E-05 44.0 10.3 68 40-107 886-955 (1692)
37 KOG1059 Vesicle coat complex A 85.8 1.9 4.2E-05 43.4 6.2 65 41-105 139-203 (877)
38 PF12755 Vac14_Fab1_bd: Vacuol 85.1 11 0.00023 28.4 8.7 73 77-168 21-93 (97)
39 PF10521 DUF2454: Protein of u 84.2 11 0.00025 33.0 9.9 73 43-115 116-206 (282)
40 PRK13800 putative oxidoreducta 84.0 6.1 0.00013 40.3 9.1 87 11-109 778-864 (897)
41 PF00514 Arm: Armadillo/beta-c 82.5 2 4.4E-05 26.5 3.3 28 83-110 12-39 (41)
42 KOG1060 Vesicle coat complex A 82.3 8.7 0.00019 39.3 9.1 86 6-98 37-123 (968)
43 PF12830 Nipped-B_C: Sister ch 81.8 11 0.00024 31.1 8.4 67 16-83 16-82 (187)
44 KOG2229 Protein required for a 81.3 42 0.00091 33.0 12.9 106 7-113 19-130 (616)
45 PRK13800 putative oxidoreducta 81.1 12 0.00025 38.3 9.8 62 7-74 651-712 (897)
46 KOG1061 Vesicle coat complex A 80.2 9.3 0.0002 38.5 8.5 90 20-110 96-187 (734)
47 KOG1058 Vesicle coat complex C 79.9 48 0.001 34.1 13.2 149 10-166 173-341 (948)
48 KOG1060 Vesicle coat complex A 79.7 19 0.00041 37.0 10.4 78 41-118 138-215 (968)
49 PF13001 Ecm29: Proteasome sta 77.6 18 0.0004 34.5 9.5 98 58-169 386-486 (501)
50 PF09324 DUF1981: Domain of un 77.0 9.9 0.00022 27.7 5.9 67 43-109 14-85 (86)
51 KOG1240 Protein kinase contain 75.3 13 0.00027 39.8 8.0 89 22-110 437-534 (1431)
52 PF02847 MA3: MA3 domain; Int 73.7 29 0.00063 25.5 7.9 66 6-77 2-67 (113)
53 KOG2149 Uncharacterized conser 72.5 45 0.00098 31.4 10.3 129 9-152 60-197 (393)
54 PF08767 CRM1_C: CRM1 C termin 71.9 75 0.0016 28.5 12.5 147 24-180 91-254 (319)
55 PF04510 DUF577: Family of unk 71.5 21 0.00046 30.0 7.2 71 43-113 81-165 (174)
56 KOG2032 Uncharacterized conser 70.4 58 0.0013 31.7 10.7 118 40-174 252-374 (533)
57 KOG1062 Vesicle coat complex A 70.0 59 0.0013 33.4 11.1 97 12-111 111-207 (866)
58 PF07571 DUF1546: Protein of u 68.6 30 0.00064 25.6 6.8 61 56-116 16-82 (92)
59 KOG1020 Sister chromatid cohes 68.5 1.6E+02 0.0035 32.6 14.3 135 19-178 827-965 (1692)
60 KOG3961 Uncharacterized conser 67.7 13 0.00029 32.6 5.4 87 25-111 91-183 (262)
61 KOG2025 Chromosome condensatio 67.6 49 0.0011 33.8 9.9 88 24-111 61-154 (892)
62 smart00544 MA3 Domain in DAP-5 67.4 44 0.00095 24.7 7.7 66 6-77 2-67 (113)
63 PF12719 Cnd3: Nuclear condens 67.1 29 0.00063 30.5 7.7 69 43-111 23-92 (298)
64 PF11935 DUF3453: Domain of un 66.8 59 0.0013 28.0 9.3 77 46-127 114-196 (239)
65 cd08050 TAF6 TATA Binding Prot 66.0 55 0.0012 29.8 9.4 69 28-96 237-322 (343)
66 smart00185 ARM Armadillo/beta- 65.8 8.2 0.00018 22.8 2.8 27 84-110 13-39 (41)
67 PF12530 DUF3730: Protein of u 65.1 88 0.0019 26.7 13.8 141 11-170 4-150 (234)
68 COG5537 IRR1 Cohesin [Cell div 65.1 69 0.0015 32.2 10.2 124 32-172 255-387 (740)
69 KOG1062 Vesicle coat complex A 64.4 14 0.0003 37.7 5.5 73 77-171 136-208 (866)
70 KOG0212 Uncharacterized conser 62.1 47 0.001 33.0 8.5 71 32-102 152-227 (675)
71 KOG0212 Uncharacterized conser 61.9 72 0.0016 31.8 9.7 84 11-95 339-427 (675)
72 KOG2973 Uncharacterized conser 61.6 53 0.0011 30.4 8.3 62 47-110 4-69 (353)
73 PF08713 DNA_alkylation: DNA a 60.6 20 0.00044 29.2 5.2 46 42-87 151-196 (213)
74 PF04826 Arm_2: Armadillo-like 59.8 1.2E+02 0.0026 26.5 11.2 137 20-160 107-251 (254)
75 PF13720 Acetyltransf_11: Udp 59.4 43 0.00093 24.3 6.1 48 22-72 29-76 (83)
76 PF01603 B56: Protein phosphat 58.5 62 0.0014 30.1 8.5 84 27-110 236-324 (409)
77 TIGR02270 conserved hypothetic 58.3 85 0.0018 29.5 9.4 21 88-108 152-172 (410)
78 PF14868 DUF4487: Domain of un 58.0 44 0.00096 32.8 7.7 71 40-110 473-550 (559)
79 PF04118 Dopey_N: Dopey, N-ter 56.8 86 0.0019 28.4 8.8 114 32-170 78-200 (307)
80 KOG1248 Uncharacterized conser 56.5 2.9E+02 0.0062 29.8 13.6 133 24-173 716-858 (1176)
81 PF02854 MIF4G: MIF4G domain; 56.4 62 0.0013 25.4 7.2 84 29-113 1-85 (209)
82 KOG3723 PH domain protein Melt 56.2 98 0.0021 31.1 9.5 98 20-118 170-276 (851)
83 PF05327 RRN3: RNA polymerase 55.9 1.5E+02 0.0032 28.9 10.9 89 6-95 31-123 (563)
84 KOG0413 Uncharacterized conser 55.5 11 0.00025 39.5 3.2 84 28-112 951-1035(1529)
85 KOG0213 Splicing factor 3b, su 55.5 1.4E+02 0.003 31.2 10.6 90 25-114 778-872 (1172)
86 KOG1061 Vesicle coat complex A 55.5 32 0.00069 34.9 6.2 61 40-101 344-404 (734)
87 PF08167 RIX1: rRNA processing 54.9 1.1E+02 0.0024 24.6 12.1 121 41-174 20-146 (165)
88 PLN03200 cellulose synthase-in 53.9 2.3E+02 0.0049 32.5 12.8 144 22-168 418-590 (2102)
89 cd06561 AlkD_like A new struct 52.8 40 0.00087 27.1 5.6 45 50-95 109-153 (197)
90 KOG1077 Vesicle coat complex A 52.6 69 0.0015 32.8 8.0 81 25-105 306-391 (938)
91 PLN03200 cellulose synthase-in 51.7 1.2E+02 0.0027 34.5 10.4 67 46-112 609-680 (2102)
92 PF04063 DUF383: Domain of unk 51.6 29 0.00063 29.2 4.7 52 27-80 86-137 (192)
93 PF11841 DUF3361: Domain of un 51.5 1.1E+02 0.0024 25.2 8.0 85 28-112 37-131 (160)
94 KOG2171 Karyopherin (importin) 51.4 2.3E+02 0.0049 30.3 11.7 107 9-115 349-464 (1075)
95 PF10363 DUF2435: Protein of u 48.7 1.1E+02 0.0023 22.7 8.0 60 20-79 15-76 (92)
96 KOG0211 Protein phosphatase 2A 48.0 75 0.0016 32.5 7.6 92 24-115 573-667 (759)
97 COG5181 HSH155 U2 snRNP splice 48.0 1.4E+02 0.003 30.5 9.2 114 1-114 540-677 (975)
98 KOG1243 Protein kinase [Genera 46.9 1.4E+02 0.0031 30.1 9.2 106 8-115 293-401 (690)
99 KOG1895 mRNA cleavage and poly 46.2 16 0.00034 38.1 2.6 64 121-185 10-74 (957)
100 KOG1824 TATA-binding protein-i 46.1 1.2E+02 0.0027 32.1 8.8 118 43-177 648-771 (1233)
101 KOG2023 Nuclear transport rece 46.0 49 0.0011 33.7 5.8 109 52-175 96-207 (885)
102 KOG1525 Sister chromatid cohes 46.0 1.4E+02 0.0031 32.3 9.6 112 43-172 219-330 (1266)
103 KOG2171 Karyopherin (importin) 46.0 4.1E+02 0.0088 28.5 13.7 106 13-119 211-354 (1075)
104 PF14838 INTS5_C: Integrator c 45.0 2.4E+02 0.0051 28.7 10.5 37 58-94 41-77 (696)
105 KOG1248 Uncharacterized conser 44.6 2E+02 0.0042 31.0 10.1 95 10-105 787-891 (1176)
106 PF14664 RICTOR_N: Rapamycin-i 44.4 1.8E+02 0.0038 26.9 9.0 75 21-95 81-159 (371)
107 KOG2213 Apoptosis inhibitor 5/ 44.1 23 0.0005 33.7 3.1 53 40-94 55-107 (460)
108 PF11698 V-ATPase_H_C: V-ATPas 43.2 1.6E+02 0.0035 23.1 7.4 31 140-171 85-115 (119)
109 KOG1824 TATA-binding protein-i 42.3 2.2E+02 0.0048 30.3 9.9 112 5-117 128-247 (1233)
110 PF08389 Xpo1: Exportin 1-like 42.2 68 0.0015 24.0 5.1 78 35-112 15-115 (148)
111 KOG0994 Extracellular matrix g 40.0 5.5E+02 0.012 28.3 12.7 120 28-148 1476-1637(1758)
112 PF12074 DUF3554: Domain of un 39.9 1.4E+02 0.003 26.6 7.4 73 22-94 176-255 (339)
113 KOG0414 Chromosome condensatio 39.8 4.9E+02 0.011 28.3 12.0 76 40-115 268-344 (1251)
114 PF13001 Ecm29: Proteasome sta 39.3 73 0.0016 30.5 5.8 59 43-102 20-82 (501)
115 KOG2023 Nuclear transport rece 38.7 1.9E+02 0.0042 29.6 8.7 71 42-112 170-244 (885)
116 KOG1241 Karyopherin (importin) 38.6 98 0.0021 31.8 6.7 76 7-82 722-818 (859)
117 KOG0168 Putative ubiquitin fus 38.4 68 0.0015 33.4 5.6 101 8-110 514-627 (1051)
118 KOG1242 Protein containing ada 37.8 84 0.0018 31.0 6.0 51 45-95 294-345 (569)
119 KOG0168 Putative ubiquitin fus 37.6 1.3E+02 0.0028 31.5 7.4 68 3-77 163-236 (1051)
120 cd09244 BRO1_Rhophilin Protein 36.9 1.7E+02 0.0037 27.0 7.6 87 54-148 152-243 (350)
121 KOG1991 Nuclear transport rece 36.0 5.6E+02 0.012 27.2 11.7 92 5-102 90-198 (1010)
122 KOG1059 Vesicle coat complex A 35.6 5.2E+02 0.011 26.8 13.2 136 32-170 168-364 (877)
123 COG5218 YCG1 Chromosome conden 35.0 5.1E+02 0.011 26.5 12.5 143 4-166 8-156 (885)
124 PF04793 Herpes_BBRF1: BRRF1-l 35.0 1.4E+02 0.0031 26.9 6.6 96 6-101 6-118 (284)
125 cd09241 BRO1_ScRim20-like Prot 34.9 2.9E+02 0.0063 25.1 8.8 99 57-169 157-266 (355)
126 TIGR02270 conserved hypothetic 34.6 3.6E+02 0.0079 25.3 9.6 57 48-110 149-205 (410)
127 PF12765 Cohesin_HEAT: HEAT re 34.4 74 0.0016 20.1 3.5 35 71-105 4-40 (42)
128 PF07540 NOC3p: Nucleolar comp 34.3 1.5E+02 0.0032 22.3 5.7 52 63-115 5-57 (95)
129 cd09240 BRO1_Alix Protein-inte 33.6 3.7E+02 0.0079 24.4 10.2 102 55-168 170-283 (346)
130 PF12726 SEN1_N: SEN1 N termin 33.5 1.2E+02 0.0026 30.3 6.5 48 29-76 102-150 (727)
131 smart00549 TAFH TAF homology. 33.5 1.3E+02 0.0028 22.8 5.2 44 44-87 5-52 (92)
132 PF02671 PAH: Paired amphipath 33.3 69 0.0015 20.3 3.3 40 7-49 5-44 (47)
133 KOG2160 Armadillo/beta-catenin 33.2 3.3E+02 0.0072 25.3 8.8 94 19-112 94-196 (342)
134 PF03130 HEAT_PBS: PBS lyase H 33.2 42 0.00091 19.0 2.0 27 62-94 1-27 (27)
135 PF09424 YqeY: Yqey-like prote 33.2 1.2E+02 0.0025 24.3 5.3 57 43-104 82-139 (143)
136 KOG4535 HEAT and armadillo rep 32.9 96 0.0021 30.6 5.5 62 93-171 117-179 (728)
137 PF07539 DRIM: Down-regulated 32.3 1.9E+02 0.0042 23.0 6.4 66 81-157 15-80 (141)
138 PF10265 DUF2217: Uncharacteri 32.1 2.1E+02 0.0046 28.0 7.7 17 22-38 295-311 (514)
139 KOG1992 Nuclear export recepto 32.1 1.8E+02 0.0039 30.4 7.4 75 45-127 87-162 (960)
140 cd03564 ANTH_AP180_CALM ANTH d 30.9 2.3E+02 0.005 21.3 7.2 62 45-106 18-79 (117)
141 PF02561 FliS: Flagellar prote 30.8 2.4E+02 0.0052 21.4 7.2 31 7-37 27-60 (122)
142 KOG2374 Uncharacterized conser 30.6 1.3E+02 0.0027 29.8 5.8 85 8-93 7-91 (661)
143 PF10395 Utp8: Utp8 family; I 30.4 44 0.00096 33.6 2.9 27 86-113 499-525 (670)
144 COG5218 YCG1 Chromosome conden 30.1 6.1E+02 0.013 25.9 12.6 103 7-109 48-158 (885)
145 KOG1240 Protein kinase contain 30.0 1.1E+02 0.0023 33.2 5.6 91 24-115 594-688 (1431)
146 KOG1077 Vesicle coat complex A 29.8 2.6E+02 0.0057 28.9 8.0 136 7-171 77-216 (938)
147 PF08389 Xpo1: Exportin 1-like 29.3 2.4E+02 0.0052 21.0 7.8 104 61-171 3-115 (148)
148 PF06580 His_kinase: Histidine 29.1 1E+02 0.0022 21.9 4.0 38 77-115 10-47 (82)
149 PRK13342 recombination factor 29.0 3E+02 0.0065 25.3 8.0 65 27-91 232-296 (413)
150 PF04844 Ovate: Transcriptiona 28.8 1.2E+02 0.0026 21.0 4.0 52 56-110 2-53 (59)
151 KOG4653 Uncharacterized conser 28.4 7.3E+02 0.016 26.2 11.2 108 8-115 847-966 (982)
152 PF09418 DUF2009: Protein of u 28.2 1E+02 0.0022 29.7 4.8 64 67-145 370-442 (458)
153 PF11698 V-ATPase_H_C: V-ATPas 28.1 1.2E+02 0.0026 23.8 4.5 25 86-110 89-113 (119)
154 PF08668 HDOD: HDOD domain; I 27.1 3.3E+02 0.007 21.7 7.7 90 44-138 4-98 (196)
155 COG1413 FOG: HEAT repeat [Ener 26.9 1.7E+02 0.0038 25.4 5.8 62 45-110 179-240 (335)
156 smart00323 RasGAP GTPase-activ 26.7 4.4E+02 0.0095 23.6 8.5 44 130-174 147-190 (344)
157 PF07531 TAFH: NHR1 homology t 26.5 1.2E+02 0.0025 23.1 3.9 32 44-75 6-38 (96)
158 KOG0166 Karyopherin (importin) 26.4 3.7E+02 0.008 26.4 8.2 84 26-109 209-305 (514)
159 PF13475 DUF4116: Domain of un 26.0 1.4E+02 0.003 18.4 3.8 40 68-112 3-42 (49)
160 KOG1991 Nuclear transport rece 25.9 5.6E+02 0.012 27.3 9.7 92 59-157 102-194 (1010)
161 cd00864 PI3Ka Phosphoinositide 25.8 3.5E+02 0.0076 21.7 7.3 44 6-50 4-47 (152)
162 smart00543 MIF4G Middle domain 25.6 3.3E+02 0.0071 21.3 7.0 73 40-114 12-84 (200)
163 cd09246 BRO1_Alix_like_1 Prote 25.5 5.2E+02 0.011 23.5 9.6 102 56-169 163-276 (353)
164 PF11865 DUF3385: Domain of un 25.3 77 0.0017 25.6 3.0 36 44-79 8-44 (160)
165 KOG2259 Uncharacterized conser 25.2 3.3E+02 0.0072 27.9 7.8 58 56-113 383-440 (823)
166 PF14764 SPG48: AP-5 complex s 25.2 97 0.0021 29.8 4.0 55 40-94 256-316 (459)
167 KOG0166 Karyopherin (importin) 25.1 3.2E+02 0.007 26.8 7.6 114 45-169 363-484 (514)
168 KOG3678 SARM protein (with ste 24.8 2.6E+02 0.0055 27.8 6.8 102 8-111 184-292 (832)
169 cd07357 HN_L-whirlin_R2_like S 24.8 74 0.0016 23.5 2.5 26 21-46 50-75 (81)
170 PF14483 Cut8_M: Cut8 dimerisa 24.4 89 0.0019 19.6 2.5 23 63-85 12-34 (38)
171 PF09790 Hyccin: Hyccin; Inte 24.3 1.2E+02 0.0027 27.5 4.4 47 27-73 17-63 (309)
172 PF12460 MMS19_C: RNAPII trans 23.8 3.9E+02 0.0085 24.6 7.7 79 12-91 328-414 (415)
173 KOG2062 26S proteasome regulat 23.7 1.9E+02 0.0042 29.9 5.9 49 48-99 556-605 (929)
174 COG5240 SEC21 Vesicle coat com 23.1 7.7E+02 0.017 25.2 9.7 64 41-104 298-361 (898)
175 KOG2274 Predicted importin 9 [ 23.0 7.8E+02 0.017 26.1 10.1 63 53-115 97-160 (1005)
176 PF12022 DUF3510: Domain of un 23.0 1.6E+02 0.0035 22.8 4.3 47 43-89 36-87 (125)
177 COG5098 Chromosome condensatio 22.9 4.2E+02 0.0091 27.6 8.0 103 49-170 302-414 (1128)
178 smart00567 EZ_HEAT E-Z type HE 22.5 1.5E+02 0.0033 16.6 3.2 29 61-95 2-30 (30)
179 PF14676 FANCI_S2: FANCI solen 22.5 1.4E+02 0.003 24.4 4.0 73 39-112 48-124 (158)
180 KOG0889 Histone acetyltransfer 22.4 3.9E+02 0.0085 32.3 8.5 93 20-112 19-126 (3550)
181 cd06873 PX_SNX13 The phosphoin 22.3 67 0.0014 24.7 2.0 28 44-71 90-118 (120)
182 PF12231 Rif1_N: Rap1-interact 22.1 6.1E+02 0.013 23.1 13.4 154 5-174 130-306 (372)
183 smart00145 PI3Ka Phosphoinosit 22.1 3.4E+02 0.0074 22.6 6.4 86 5-90 7-121 (184)
184 PF04286 DUF445: Protein of un 22.0 5.3E+02 0.012 22.4 8.9 54 40-93 140-197 (367)
185 smart00273 ENTH Epsin N-termin 21.9 3.6E+02 0.0078 20.4 8.2 62 42-104 17-80 (127)
186 PF03224 V-ATPase_H_N: V-ATPas 21.8 3E+02 0.0065 24.2 6.4 72 40-112 52-134 (312)
187 KOG2141 Protein involved in hi 21.7 2.5E+02 0.0055 28.8 6.3 75 38-112 421-495 (822)
188 KOG1967 DNA repair/transcripti 21.0 4.8E+02 0.01 27.7 8.2 97 8-105 909-1017(1030)
189 COG5110 RPN1 26S proteasome re 20.9 2.2E+02 0.0047 28.8 5.5 69 10-78 49-127 (881)
190 PF14663 RasGEF_N_2: Rapamycin 20.9 2.1E+02 0.0047 21.7 4.6 23 55-77 17-39 (115)
191 KOG2274 Predicted importin 9 [ 20.8 3.6E+02 0.0078 28.4 7.2 90 10-100 493-590 (1005)
192 PF08359 TetR_C_4: YsiA-like p 20.6 3.6E+02 0.0079 20.0 8.0 117 8-139 7-130 (133)
193 PRK14902 16S rRNA methyltransf 20.5 6.9E+02 0.015 23.2 9.3 153 1-165 1-188 (444)
194 cd05127 RasGAP_IQGAP_related T 20.5 3E+02 0.0065 24.5 6.1 44 129-173 118-161 (325)
195 TIGR03818 MotA1 flagellar moto 20.2 6.2E+02 0.014 22.5 10.6 119 36-156 109-254 (282)
No 1
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=99.92 E-value=1.2e-25 Score=193.62 Aligned_cols=98 Identities=29% Similarity=0.416 Sum_probs=79.9
Q ss_pred hhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhh
Q 028959 91 FLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (201)
Q Consensus 91 LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vI 170 (201)
||+|+||+|+|++|+|+|++||.+| +|++ .+++++++|++|++||++|++ +|+++|+|||++|+||+|+||
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~-----~~i~---~~~~~~~~W~~~~~lK~~Il~-~~~~~~~gvk~~~iKFle~vI 71 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVF-----RWIC---VNPSDEQLWESMNELKDRILS-LWDSENPGVKLAAIKFLERVI 71 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHH-----HHHS-----HHHHHHHHHHHHHHHHHHH-GGGSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHH-----HHHc---CCchHHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHH
Confidence 6899999999999999999999999 7773 566899999999999999999 799999999999999999999
Q ss_pred hhccCCCCCCccccccccccceehhhhcc
Q 028959 171 LLFTSDSNDFENFTKEGIAFLFVMAIYLK 199 (201)
Q Consensus 171 L~qT~~~~d~~~~~~~~~~~~~~~~~~~~ 199 (201)
++||+++.+++.+ .+...+||++|++.
T Consensus 72 l~qs~~~~~~~~~--~~~~~d~SL~~vp~ 98 (239)
T PF11935_consen 72 LVQSPGSSDSPPR--RGSPNDFSLSSVPP 98 (239)
T ss_dssp HHTS---TTS-----GGGTTS--GGGS-T
T ss_pred HhcCCCCCCCccc--cccccCCCHHHcCC
Confidence 9999998877665 55677999999875
No 2
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=99.78 E-value=6.3e-19 Score=174.57 Aligned_cols=147 Identities=35% Similarity=0.491 Sum_probs=141.5
Q ss_pred HHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhh
Q 028959 28 SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (201)
Q Consensus 28 ~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~ 107 (201)
.|+.+++++...++++.+||++++.+|..++...||++++++++|++.++.++++.++++|..++.|+ |.|.++.|.++
T Consensus 2 sl~~~~~~l~~~~~~~~~e~~~~l~el~~~~~~~i~~~l~~~~~~i~~~~~~~~~~lv~~ls~~l~d~-~~~r~~~i~~~ 80 (957)
T KOG1895|consen 2 SLSYAMHLLIDVSSSISDELLTELLELLELNDGLIRCLLVEILLEIGLKDFELCNKLVETLSPYLEDN-PIVRRQSIIKG 80 (957)
T ss_pred cHHHHHHHHhcccccccHhHHHHHHHHHhCCcchhhhhHHHHHhhhhHHHHHhhhhHHHHhhhhhcCc-hhhHHHHHhhh
Confidence 47789999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhhccCCC
Q 028959 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDS 177 (201)
Q Consensus 108 t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~qT~~~ 177 (201)
+..+|..|+++..|+..+++ +++.+.+|.+|..+|++|+. -...|+.|||+++.||+|.+|+++|++.
T Consensus 81 ~d~~~s~l~~i~~~~~~~~~-~~~~~s~w~~~~~~k~~i~~-~~~~G~v~vk~~~~~f~~~~i~~~t~~l 148 (957)
T KOG1895|consen 81 ADVARSNLEPIVLQFLHMEK-NDLAESLWTAFHLFKDRICL-DDHQGTVGVKVLAAKFMEQSILLYTPDL 148 (957)
T ss_pred hhhhhhccHHHHHHHHhcch-hHHHHHHHHHHHHhHHHHhh-ccccCcchhhhhHHHHHHhhhhhhcccc
Confidence 99999999999999999999 99999999999999999994 6668899999999999999999999865
No 3
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.22 E-value=0.0016 Score=63.01 Aligned_cols=111 Identities=19% Similarity=0.157 Sum_probs=73.7
Q ss_pred cCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHH
Q 028959 38 SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (201)
Q Consensus 38 ~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~ 117 (201)
..-|+|-++-++-++.+..|.+..||++.+-=|-.+|+-.+++++++.++|..||.-+++..+..+=.+..+||+.==
T Consensus 51 k~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-- 128 (556)
T PF05918_consen 51 KHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-- 128 (556)
T ss_dssp CC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-H--
T ss_pred hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc--
Confidence 346999999999999999999999999999999999999999999999999999998887776666566666655211
Q ss_pred HhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhh-hHhh
Q 028959 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFL-ETHV 170 (201)
Q Consensus 118 ~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~-E~vI 170 (201)
=..++.|=+.|.. . .++.+.||--++||+ ++++
T Consensus 129 ------------------k~tL~~lf~~i~~-~-~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 129 ------------------KGTLTGLFSQIES-S-KSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp ------------------HHHHHHHHHHHH-----HS-HHHHHHHHHHHHHHGG
T ss_pred ------------------HHHHHHHHHHHHh-c-ccCchHHHHHHHHHHHHHHh
Confidence 1122333344442 1 346778999999999 4444
No 4
>PRK09687 putative lyase; Provisional
Probab=97.04 E-value=0.041 Score=48.65 Aligned_cols=155 Identities=12% Similarity=-0.056 Sum_probs=100.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhh-ccCcchhHHHHHHHHHHHHhhchhhhhhhHHH
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMP 86 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f-~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~ 86 (201)
.+..++..+..+.|...+.....-+-++= ..+.-.++.++-+..+ ..|++..||...++-++..|...+...+.+++
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg--~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~ 131 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLG--MAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVE 131 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHH
Confidence 44555555555566555555554444432 1112256778888866 68999999999999999999888877888888
Q ss_pred HHHHhhccCChhHHHHHHhhhhhhh-HHHHHHHhhhhhccCcchhhHHHHHHHHHHhH-------HHHHHHhccCCCCch
Q 028959 87 VLLAFLRDGDSGVAGKSIVCGTNFF-CRVLEEITMQFRWHGKVERWLEELWTWMVRFK-------DAVFAIALEPGLVGT 158 (201)
Q Consensus 87 ~L~~LL~D~~~~VvK~aI~~~t~ly-r~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK-------~~Il~~~~~s~n~GV 158 (201)
.+..++.|+++.|=+.++.+.+.+= +.++.-+. +-+. .+.++--......+..++ ..+.. ++++.+..|
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~-~~L~-d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~-~L~D~~~~V 208 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVINDEAAIPLLI-NLLK-DPNGDVRNWAAFALNSNKYDNPDIREAFVA-MLQDKNEEI 208 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHH-HHhc-CCCHHHHHHHHHHHhcCCCCCHHHHHHHHH-HhcCCChHH
Confidence 8888999999998888888776542 33332221 2222 221222233444444442 33566 668889999
Q ss_pred hHHHHHhhh
Q 028959 159 KLLALKFLE 167 (201)
Q Consensus 159 r~~aiKF~E 167 (201)
|..|+.-+-
T Consensus 209 R~~A~~aLg 217 (280)
T PRK09687 209 RIEAIIGLA 217 (280)
T ss_pred HHHHHHHHH
Confidence 999998875
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.98 E-value=0.0054 Score=56.81 Aligned_cols=99 Identities=23% Similarity=0.299 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhh-HHHH
Q 028959 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI-LMPV 87 (201)
Q Consensus 9 v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~-~v~~ 87 (201)
++..+...-.+++-..+.-.|+.+-.+. +|.+.+.+++.+..+..|+++-|||-.+--+..+++.+|+.+.. .++.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~ 156 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPK 156 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4555555556677667888888777765 88999999999999999999999999999999999999999988 7999
Q ss_pred HHHhhccCChhHHHHHHhhhhhh
Q 028959 88 LLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 88 L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
|..+|.|.+|.|+..|+.+...+
T Consensus 157 l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 157 LKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HhhhccCCcchhHHHHHHHHHHH
Confidence 99999999999999998888777
No 6
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.85 E-value=0.0057 Score=43.19 Aligned_cols=57 Identities=23% Similarity=0.396 Sum_probs=43.3
Q ss_pred hHHHhhhc-cCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 48 FPYLVELQ-SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 48 l~~il~f~-~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
+|.+++.- .|++..||...+..+++.+. +.+++.|..+++|++|.|-..|+.+.+.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 35666544 78999999988888885542 26688888888999998888888877665
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.029 Score=56.17 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhH--
Q 028959 8 QALSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL-- 84 (201)
Q Consensus 8 ~v~~lLn~A~~~-~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~-- 84 (201)
+.+-.+|.-..- .|-.+.+.... +|-+-.=+++++++++++.+.+.-+|+++.|||-++-=+.+..+-++++.+..
T Consensus 89 ~~lLavNti~kDl~d~N~~iR~~A-lR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~ 167 (757)
T COG5096 89 LALLAVNTIQKDLQDPNEEIRGFA-LRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGL 167 (757)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHH-HHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccH
Confidence 333444444332 33335665554 55555556889999999999999999999999999999999999998888876
Q ss_pred HHHHHHhhccCChhHHHHHHhhhhhhhHH
Q 028959 85 MPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 85 v~~L~~LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
+..+..|+.|+||.|+..|..+...+++.
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 66778888899999999999999999998
No 8
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.34 E-value=0.026 Score=46.20 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=70.5
Q ss_pred chhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHH
Q 028959 59 ESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTW 138 (201)
Q Consensus 59 ~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~ 138 (201)
++.||.-++--++..|.++|.++...+|.+...|+|++|.|=|.|+.+.+.|.. +...+-+ .
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~--------~d~ik~k-----~----- 62 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL--------EDMIKVK-----G----- 62 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--------cCceeeh-----h-----
Confidence 467899999999999999999999999999999999999999998888887754 2222111 0
Q ss_pred HHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhhcc
Q 028959 139 MVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (201)
Q Consensus 139 m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~qT 174 (201)
.+=..++. .+...|+.||-.|..|+..+..-.+
T Consensus 63 --~l~~~~l~-~l~D~~~~Ir~~A~~~~~e~~~~~~ 95 (178)
T PF12717_consen 63 --QLFSRILK-LLVDENPEIRSLARSFFSELLKKRN 95 (178)
T ss_pred --hhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHhcc
Confidence 11123444 4466788899988888888766543
No 9
>PTZ00429 beta-adaptin; Provisional
Probab=96.15 E-value=0.16 Score=51.03 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=69.6
Q ss_pred cCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhh--hHHHHHHHhhccC
Q 028959 18 NHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS--ILMPVLLAFLRDG 95 (201)
Q Consensus 18 ~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~--~~v~~L~~LL~D~ 95 (201)
..++--.+.-.|+.+-. =+.|++++.+++.+.....|+++-|||-.+==+..+...+|+++. ..++.|..||.|.
T Consensus 115 ~d~Np~IRaLALRtLs~---Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~ 191 (746)
T PTZ00429 115 TNSSPVVRALAVRTMMC---IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDN 191 (746)
T ss_pred CCCCHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCC
Confidence 34443344444443333 236778888888888888999999999999888899999998875 5689999999999
Q ss_pred ChhHHHHHHhhhhhh
Q 028959 96 DSGVAGKSIVCGTNF 110 (201)
Q Consensus 96 ~~~VvK~aI~~~t~l 110 (201)
||.|+-.|+.+...+
T Consensus 192 dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 192 NPVVASNAAAIVCEV 206 (746)
T ss_pred CccHHHHHHHHHHHH
Confidence 999999998876655
No 10
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.00 E-value=0.031 Score=51.82 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=66.4
Q ss_pred cCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHH
Q 028959 38 SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (201)
Q Consensus 38 ~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~ 117 (201)
+.+|.++--..+.+..=-.+++..+|.....++..++ .+++++.+++.+..+|.|++|.|=|+|+.|...+|+..=
T Consensus 71 ~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-- 146 (526)
T PF01602_consen 71 HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP-- 146 (526)
T ss_dssp TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--
T ss_pred hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--
Confidence 3344433333333332223344445555555555544 577778888888888888888888888888888887522
Q ss_pred HhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHh
Q 028959 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (201)
Q Consensus 118 ~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~v 169 (201)
. ..+.. +-+.+.+ ++.+.+.||+.+|+.++..+
T Consensus 147 --------~----~~~~~------~~~~l~~-lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 147 --------D----LVEDE------LIPKLKQ-LLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp --------C----CHHGG------HHHHHHH-HTTHSSHHHHHHHHHHHHHH
T ss_pred --------H----HHHHH------HHHHHhh-hccCCcchhHHHHHHHHHHH
Confidence 0 11111 2344555 55667789999999988877
No 11
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.66 E-value=0.11 Score=42.41 Aligned_cols=86 Identities=16% Similarity=0.260 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-hhhhhhHHHHHHHhhccCChhHHHH
Q 028959 24 VKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEHSSILMPVLLAFLRDGDSGVAGK 102 (201)
Q Consensus 24 ~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-~el~~~~v~~L~~LL~D~~~~VvK~ 102 (201)
.|...+...-+|... .|++++.++|.+...-.|+++.||+..+--+-..-..+ ...=+.++..+..+|.|+|+.|..-
T Consensus 4 vR~n~i~~l~DL~~r-~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 4 VRNNAIIALGDLCIR-YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHHh-CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 344555555555533 66666666666666666666666666665555544444 2222333345555566666666666
Q ss_pred HHhhhhhh
Q 028959 103 SIVCGTNF 110 (201)
Q Consensus 103 aI~~~t~l 110 (201)
|..+...+
T Consensus 83 A~~~~~e~ 90 (178)
T PF12717_consen 83 ARSFFSEL 90 (178)
T ss_pred HHHHHHHH
Confidence 55554443
No 12
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.60 E-value=0.1 Score=43.43 Aligned_cols=143 Identities=13% Similarity=0.169 Sum_probs=82.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhccC-CCchHHhhhH-------HHhhhccCcchhHHHHHHHHHHHHhh---ch
Q 028959 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSA-DPSLAAELFP-------YLVELQSSPESLVRKSLIETIEDIGL---KA 77 (201)
Q Consensus 9 v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~-dp~ll~~fl~-------~il~f~~d~~~~VRk~v~~fiee~c~---~~ 77 (201)
+...++.-....|=.++.+.|.+++.++.+. .....+.|++ .+..-..|..+.|-+....++.+.+. ++
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 3445555445588889999999999999875 2234444433 44444567777777777777776666 33
Q ss_pred -hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHh-HHHHHHHhccCCC
Q 028959 78 -MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF-KDAVFAIALEPGL 155 (201)
Q Consensus 78 -~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~l-K~~Il~~~~~s~n 155 (201)
..++..++|.|...+.|.+..|...|-.|...+...+= .++ .+ ...+.. ...+.|
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---------~~~-------------~~~~~~l~~-~~~~Kn 144 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---------YSP-------------KILLEILSQ-GLKSKN 144 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----------H---------------HHHHHHHHH-HTT-S-
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---------cHH-------------HHHHHHHHH-HHhCCC
Confidence 45788999999999999988777777776665543211 000 22 333333 567777
Q ss_pred CchhHHHHHhhhHhhhhcc
Q 028959 156 VGTKLLALKFLETHVLLFT 174 (201)
Q Consensus 156 ~GVr~~aiKF~E~vIL~qT 174 (201)
..+|..|..++..++--..
T Consensus 145 ~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 145 PQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 8888888888877765554
No 13
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.48 E-value=0.16 Score=36.74 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=65.4
Q ss_pred ChHHHHHHHHHHHHhhccCCC---chHH-hhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhh----h-hhHHHHHHHh
Q 028959 21 DLAVKLSSLKQVRGILSSADP---SLAA-ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH----S-SILMPVLLAF 91 (201)
Q Consensus 21 d~~~Kl~~L~q~~elll~~dp---~ll~-~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el----~-~~~v~~L~~L 91 (201)
+...|...+..+..+..+.++ .++. ++++.++++-.|+++.||+..+..+..+|...++. . ..+++.|..+
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~ 99 (120)
T cd00020 20 DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNL 99 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHH
Confidence 355777788878877755211 1343 77778888888888899999999999888766332 1 2367888888
Q ss_pred hccCChhHHHHHHhhhhhh
Q 028959 92 LRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 92 L~D~~~~VvK~aI~~~t~l 110 (201)
|++.+..|.+.+..+..+|
T Consensus 100 l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 100 LDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HhcCCHHHHHHHHHHHHHh
Confidence 8888888888888877765
No 14
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.37 E-value=0.13 Score=36.08 Aligned_cols=82 Identities=26% Similarity=0.431 Sum_probs=58.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHh
Q 028959 12 LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF 91 (201)
Q Consensus 12 lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~L 91 (201)
|++.....+|...|...+..+.++- + ++.++.++++..|+++.||...+..++.++ -+.+++.|..+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~---~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~~~ 70 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELG---D----PEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALIKL 70 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCT---H----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC---C----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 4444445677667777666666432 2 467777887779999999999999999886 35688899999
Q ss_pred hccCChhHHHH-HHhh
Q 028959 92 LRDGDSGVAGK-SIVC 106 (201)
Q Consensus 92 L~D~~~~VvK~-aI~~ 106 (201)
+.|++..++|. ++++
T Consensus 71 l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 71 LQDDDDEVVREAAAEA 86 (88)
T ss_dssp HTC-SSHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHhh
Confidence 98876666554 4443
No 15
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.11 E-value=0.072 Score=38.68 Aligned_cols=104 Identities=15% Similarity=0.068 Sum_probs=70.9
Q ss_pred hhHHHhhhccCcchhHHHHHHHHHHHHhhch----hhhhh-hHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhh
Q 028959 47 LFPYLVELQSSPESLVRKSLIETIEDIGLKA----MEHSS-ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQ 121 (201)
Q Consensus 47 fl~~il~f~~d~~~~VRk~v~~fiee~c~~~----~el~~-~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q 121 (201)
.++.++++-.+.+..+|...+.-+...|... .++.. .+++.|..+|+|+++.|.+.++.+.++|-...=
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~------ 81 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE------ 81 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH------
Confidence 5677777777888999999999999999863 23333 788999999999999999999999888743110
Q ss_pred hhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhh
Q 028959 122 FRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLE 167 (201)
Q Consensus 122 ~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E 167 (201)
...+..++ ..+-..+++ .+++++..++-.|.-++-
T Consensus 82 --------~~~~~~~~--~g~l~~l~~-~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 82 --------DNKLIVLE--AGGVPKLVN-LLDSSNEDIQKNATGALS 116 (120)
T ss_pred --------HHHHHHHH--CCChHHHHH-HHhcCCHHHHHHHHHHHH
Confidence 01112221 123445555 445556667766665554
No 16
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.07 E-value=0.6 Score=44.70 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHh----hhccC-cchhHHHHHHHHHHHHhhchh-
Q 028959 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLV----ELQSS-PESLVRKSLIETIEDIGLKAM- 78 (201)
Q Consensus 5 ~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il----~f~~d-~~~~VRk~v~~fiee~c~~~~- 78 (201)
..+.|.++|++-..+..++++-+.|.++.+++-...=++-+++|.+|| +.-.| .+.-.||.-...|+|+|+..+
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 457889999999888777789999999999998766666666666644 55677 666688888899999999774
Q ss_pred ---hhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHH
Q 028959 79 ---EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (201)
Q Consensus 79 ---el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L 115 (201)
+...-++..++.--.|.++.|++.|-++|+.+-...+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC
Confidence 3344455555555668999999999999887766555
No 17
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.05 E-value=0.18 Score=50.61 Aligned_cols=95 Identities=13% Similarity=0.183 Sum_probs=74.4
Q ss_pred hcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh---------------------
Q 028959 17 NNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--------------------- 75 (201)
Q Consensus 17 ~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~--------------------- 75 (201)
...++..+|++-+++.---+.+-++ ...+|+.++-+...++.++||.+=-+++-..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N 105 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPN 105 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCC
Confidence 3344566899988876544444333 78888888877778899999988877765444
Q ss_pred --------------chhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHH
Q 028959 76 --------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 76 --------------~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
+.++++..+++.+..+++|++|-|=|.|+.|-+.+|+.
T Consensus 106 ~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 106 EEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 44788888999999999999999999999999999953
No 18
>PTZ00429 beta-adaptin; Provisional
Probab=94.80 E-value=0.8 Score=46.10 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=57.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhh-ccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHH
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGIL-SSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMP 86 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~ell-l~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~ 86 (201)
.+.++-+.-+ ..|..+|.+.++++--.+ .+.|- ..+|++++.+....+.++||.+-=|+...++.+++++.-++.
T Consensus 33 e~~ELr~~L~-s~~~~~kk~alKkvIa~mt~G~Dv---S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaIN 108 (746)
T PTZ00429 33 EGAELQNDLN-GTDSYRKKAAVKRIIANMTMGRDV---SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVN 108 (746)
T ss_pred hHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHH
Confidence 4444433333 345668888888876666 44444 446777887777889999999988887776655555444444
Q ss_pred HHHHhhccCChhHHHHHHh
Q 028959 87 VLLAFLRDGDSGVAGKSIV 105 (201)
Q Consensus 87 ~L~~LL~D~~~~VvK~aI~ 105 (201)
++..=+.|+||.|-=-||.
T Consensus 109 tl~KDl~d~Np~IRaLALR 127 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVR 127 (746)
T ss_pred HHHHHcCCCCHHHHHHHHH
Confidence 4444444433333333333
No 19
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.77 E-value=1.6 Score=37.40 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=72.1
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhh--------c--cCcchhHHHHHHHHHHHHhhch
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL--------Q--SSPESLVRKSLIETIEDIGLKA 77 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f--------~--~d~~~~VRk~v~~fiee~c~~~ 77 (201)
.+++.|..=...+....+--.++.+-.+..+ ++.-+ .|+..++.+ . .+...++.--.+-=+.++|+.+
T Consensus 38 ~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~-~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~ 115 (234)
T PF12530_consen 38 PVLQTLVSLVEQGSLELRYVALRLLTLLWKA-NDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR 115 (234)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHh-CchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC
Confidence 4455555444444432333556666666644 55433 566666655 1 2333334444456889999999
Q ss_pred hhhhhhHHHHHHHhh-ccCChhHHHHHHhhhhhhhHHHHHHH
Q 028959 78 MEHSSILMPVLLAFL-RDGDSGVAGKSIVCGTNFFCRVLEEI 118 (201)
Q Consensus 78 ~el~~~~v~~L~~LL-~D~~~~VvK~aI~~~t~lyr~~L~~~ 118 (201)
|++-..+++.|...| .++++.+.--++++.+.+.+.-.-..
T Consensus 116 p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~ 157 (234)
T PF12530_consen 116 PDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF 157 (234)
T ss_pred hhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH
Confidence 999999999999999 78889999999999888886655333
No 20
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.02 E-value=0.23 Score=37.40 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=52.9
Q ss_pred chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch----hhhhhhHHHHHHHhhccCChhHHHHH
Q 028959 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDGDSGVAGKS 103 (201)
Q Consensus 42 ~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~----~el~~~~v~~L~~LL~D~~~~VvK~a 103 (201)
.+++++++.++..-.|+++.||-...+-+-.+++.. ..+.+.+.+.|..++.|.++.|-..|
T Consensus 23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 478999999999999999999999999999888854 35678889999999999999975543
No 21
>PRK09687 putative lyase; Provisional
Probab=93.98 E-value=0.51 Score=41.71 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=69.3
Q ss_pred HHHHHHHHHh-hcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHH
Q 028959 7 DQALSLLAAA-NNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILM 85 (201)
Q Consensus 7 ~~v~~lLn~A-~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v 85 (201)
++++.+|.+. ...+|...+-.....+-++- ..++...+.+++.+.....|.+..||+.++.=+++++. +.++
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~-~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------~~ai 161 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRC-KKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND------EAAI 161 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccc-ccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------HHHH
Confidence 4566666655 44466656666666555542 23444567778887788888899999999888876542 3477
Q ss_pred HHHHHhhccCChhHHHHHHhhhhhh
Q 028959 86 PVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 86 ~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
+.|..+|+|+++.|=+.|+.+.+.+
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 8888888899888888888888876
No 22
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.88 E-value=0.15 Score=33.40 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHhhch----hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 61 LVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 61 ~VRk~v~~fiee~c~~~----~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
.||...+--|++++... ..+.+.+++.|..+|+|+++.|-..|.-|.++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57888888887655433 468889999999999999998877777666554
No 23
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.56 E-value=0.25 Score=41.03 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=59.7
Q ss_pred chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 42 ~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
++.-.|++.|+++..+++..||...+++|+-+-+.=--+=..++|+|..|..|+++.+-++|...-..++
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999997776544444578999999999999999999998887774
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.30 E-value=2.8 Score=40.00 Aligned_cols=87 Identities=22% Similarity=0.315 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhcc-CCCc-hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhh-----hhhhHHHHHHHhhccCC
Q 028959 24 VKLSSLKQVRGILSS-ADPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME-----HSSILMPVLLAFLRDGD 96 (201)
Q Consensus 24 ~Kl~~L~q~~elll~-~dp~-ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~e-----l~~~~v~~L~~LL~D~~ 96 (201)
+.++....+=+.++. .+|. +++++.+.+...-..+++.||..++.-|+.+...... .-..+++.+...|.|++
T Consensus 53 e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d 132 (503)
T PF10508_consen 53 EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD 132 (503)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc
Confidence 455544444444444 3554 6888888888877788899999988877765543322 22567888888999999
Q ss_pred hhHHHHHHhhhhhh
Q 028959 97 SGVAGKSIVCGTNF 110 (201)
Q Consensus 97 ~~VvK~aI~~~t~l 110 (201)
..|.+.|+.+...|
T Consensus 133 ~~Va~~A~~~L~~l 146 (503)
T PF10508_consen 133 LSVAKAAIKALKKL 146 (503)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888777
No 25
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=0.6 Score=47.08 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=81.2
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhc-cCcchhHHHHHHHHHHHH------------------
Q 028959 13 LAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ-SSPESLVRKSLIETIEDI------------------ 73 (201)
Q Consensus 13 Ln~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~-~d~~~~VRk~v~~fiee~------------------ 73 (201)
+.++...+|..+|++-++++--++++-++ +|+++-.|+-|. +.++-+++|.+.-|.|-.
T Consensus 25 ik~~Lek~~~~~KIeamK~ii~~mlnGe~--~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcn 102 (948)
T KOG1058|consen 25 IKEKLEKGDDEVKIEAMKKIIALMLNGED--LPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCN 102 (948)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCC--chHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHH
Confidence 55666678888999999999999987543 455677777776 788888999887555422
Q ss_pred ---------------------hh-chhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHH
Q 028959 74 ---------------------GL-KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 74 ---------------------c~-~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
|+ +++|++..++|.++.=|++..+-|=|.||.|--+||+.
T Consensus 103 a~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 103 AYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 22 56899999999999999999999999999999999998
No 26
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=91.78 E-value=0.64 Score=39.19 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=61.1
Q ss_pred chHHhhhHHHhhhccCcchhHHHHHHHHHHH-HhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 42 SLAAELFPYLVELQSSPESLVRKSLIETIED-IGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 42 ~ll~~fl~~il~f~~d~~~~VRk~v~~fiee-~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
.+|+-|++++-|-.+.-..-.++-+.+.++. ...|-.-++|+++..|..-|+..|+.|.+.+..+...|
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4899999999999888778888888999998 55566789999999999999999999999999988777
No 27
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.74 E-value=0.29 Score=28.88 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=14.3
Q ss_pred hHHHhhhccCcchhHHHHHHHHHHHHh
Q 028959 48 FPYLVELQSSPESLVRKSLIETIEDIG 74 (201)
Q Consensus 48 l~~il~f~~d~~~~VRk~v~~fiee~c 74 (201)
+|.++++..|++.+||...+.-+++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544
No 28
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.66 E-value=0.78 Score=34.25 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=59.7
Q ss_pred hhHHHhhhccCcchhHHHHHHHHHHHHhhchh---hhhhhHHHHHHHhhccCChhHHHHHHhhhhh---hhHH-HHHHHh
Q 028959 47 LFPYLVELQSSPESLVRKSLIETIEDIGLKAM---EHSSILMPVLLAFLRDGDSGVAGKSIVCGTN---FFCR-VLEEIT 119 (201)
Q Consensus 47 fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~---el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~---lyr~-~L~~~~ 119 (201)
-+.+.+.-..|+.++||=+..-.|....++.. ...+.++..+...|+|+|+-|==.||++.+. .||. ++..++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILL 83 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 35667777789999999999999998887654 7788999999999999999997777776554 4665 665655
Q ss_pred hhhh
Q 028959 120 MQFR 123 (201)
Q Consensus 120 ~q~i 123 (201)
.+|.
T Consensus 84 ~~y~ 87 (92)
T PF10363_consen 84 DEYA 87 (92)
T ss_pred HHHh
Confidence 4443
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.26 E-value=6.3 Score=37.60 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCC--chH--HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP--SLA--AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS 81 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp--~ll--~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~ 81 (201)
-.+..+.|.....+++...|...+++++.++-+.+. .++ +++++.++....|++..|.+..+..|..+++..+++
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~- 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL- 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-
Confidence 457788899999998888999999999998865433 122 788899999999999999999999999999866544
Q ss_pred hhH-----HHHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 82 SIL-----MPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 82 ~~~-----v~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
..+ +..|..++...+..|--|+..+...+.
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~ 188 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA 188 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 233 778888887767767666666554443
No 30
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.62 E-value=0.26 Score=31.65 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=28.8
Q ss_pred hccCCCchHH--hhhHHHhhhccCcchhHHHHHHHHH
Q 028959 36 LSSADPSLAA--ELFPYLVELQSSPESLVRKSLIETI 70 (201)
Q Consensus 36 ll~~dp~ll~--~fl~~il~f~~d~~~~VRk~v~~fi 70 (201)
+.++||.+++ .+.+.+..-..|+++.||+..+++|
T Consensus 6 iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 6 IVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4477998764 7777777888999999999999875
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=90.52 E-value=8.2 Score=31.92 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=50.4
Q ss_pred hHHhh-hHHHhhhccCcchhHHHHHHHHHHHHhhchh---h------hhhhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 43 LAAEL-FPYLVELQSSPESLVRKSLIETIEDIGLKAM---E------HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 43 ll~~f-l~~il~f~~d~~~~VRk~v~~fiee~c~~~~---e------l~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
+.+.+ ++.+.....++++.+|...+.++..+..+.+ . .++.+++.+..++.|.+|.|=+.|-.|...+|.
T Consensus 127 ~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 127 YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 45666 5555567799999999999999998887665 1 246789999999999999997777766666665
Q ss_pred HH
Q 028959 113 RV 114 (201)
Q Consensus 113 ~~ 114 (201)
..
T Consensus 207 ~~ 208 (228)
T PF12348_consen 207 HF 208 (228)
T ss_dssp HH
T ss_pred HC
Confidence 43
No 32
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.02 E-value=0.55 Score=27.65 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=25.8
Q ss_pred HHHHHHHhhccCChhHHHHHHhhhhhhhHH
Q 028959 84 LMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 84 ~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
++|.+..+++|+++.|=..|+.|.+.+.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999988763
No 33
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.60 E-value=0.4 Score=50.73 Aligned_cols=144 Identities=16% Similarity=0.187 Sum_probs=101.9
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhc---cCcchhHHHHHHHHHHHHhhchhhhhhhHHHHH
Q 028959 12 LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ---SSPESLVRKSLIETIEDIGLKAMEHSSILMPVL 88 (201)
Q Consensus 12 lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~---~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L 88 (201)
.|+.-.. .+.+.++..+....+.+++ +|+...+. ..++.+. +|.+..+|+.++=-+-++.+...++.+.++.-+
T Consensus 305 fl~r~~D-~~~~vR~~~v~~~~~~l~~-~~~~~~~~-~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~ 381 (1266)
T KOG1525|consen 305 FLGRFND-ISVEVRMECVESIKQCLLN-NPSIAKAS-TILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLV 381 (1266)
T ss_pred HHHHhcc-CChhhhhhHHHHhHHHHhc-CchhhhHH-HHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHH
Confidence 3444433 3345899999999999988 77765443 2333333 777777777776555555556667777778888
Q ss_pred HHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhH
Q 028959 89 LAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLET 168 (201)
Q Consensus 89 ~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~ 168 (201)
...++|--+.|=|.||...+.+|+.+. +-+ +......|..++.|++.+|+ .++-.+.-.| ++.-
T Consensus 382 ~eR~rDKk~~VR~~Am~~LaqlYk~~~-----~~~-----~~~~k~~t~~~swIp~kLL~-~~y~~~~~~r-----~~vE 445 (1266)
T KOG1525|consen 382 AERLRDKKIKVRKQAMNGLAQLYKNVY-----CLR-----SAGGKEITPPFSWIPDKLLH-LYYENDLDDR-----LLVE 445 (1266)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHH-----Hhh-----ccCcccccccccccchhHHh-hHhhccccHH-----HHHH
Confidence 888999999999999999999999866 222 22346889999999999999 6665556666 4444
Q ss_pred hhhhcc
Q 028959 169 HVLLFT 174 (201)
Q Consensus 169 vIL~qT 174 (201)
.|+.+.
T Consensus 446 ~il~~~ 451 (1266)
T KOG1525|consen 446 RILAEY 451 (1266)
T ss_pred HHHHHh
Confidence 445444
No 34
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.30 E-value=4 Score=42.62 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhcc-CC--CchHHhhhHHHhhhc-cCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHh----hccCC
Q 028959 25 KLSSLKQVRGILSS-AD--PSLAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF----LRDGD 96 (201)
Q Consensus 25 Kl~~L~q~~elll~-~d--p~ll~~fl~~il~f~-~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~L----L~D~~ 96 (201)
+++.|.+.+..+.. .| -+.++.++++++-=. .|-.+++|--.++.|+.-++.+|++...- +++.+ |.|.+
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~d--sYLKYiGWtLsDk~ 339 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSD--SYLKYIGWTLSDKN 339 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcc--hHHHHhcceeecCc
Confidence 46666665555532 12 125566666665333 89999999999999999999999887654 33333 66999
Q ss_pred hhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhh
Q 028959 97 SGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLE 167 (201)
Q Consensus 97 ~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E 167 (201)
..|=++++.+.-.||-.- .....+=.-.+.||++|+.+..-..+.|||.+.++-..
T Consensus 340 ~~VRl~~lkaL~~L~e~~---------------~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~ 395 (1048)
T KOG2011|consen 340 GTVRLRCLKALIKLYEKD---------------EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCL 395 (1048)
T ss_pred cHHHHHHHHHHHHHHhcc---------------ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 999999999888887641 11222223456999999995523789999999986543
No 35
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.05 E-value=3.7 Score=40.14 Aligned_cols=131 Identities=14% Similarity=0.050 Sum_probs=81.0
Q ss_pred HHHHHHHHhhcc-CCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHh
Q 028959 27 SSLKQVRGILSS-ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIV 105 (201)
Q Consensus 27 ~~L~q~~elll~-~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~ 105 (201)
+-|-+..|.|-. +|.+-=.+=+.+||+... .+..+++..+.||-.-.+.-|++...++..+..|.+|+|+.|=++||.
T Consensus 3 e~lY~~~~~L~~a~d~~~~~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik 81 (556)
T PF05918_consen 3 EKLYENYEILADAKDKSQHEEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIK 81 (556)
T ss_dssp HHHHHHHHHHHHTGGGGGGHHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCCcccCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 334444454432 122222445666776664 578899999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHH------hhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhh
Q 028959 106 CGTNFFCRVLEEI------TMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLE 167 (201)
Q Consensus 106 ~~t~lyr~~L~~~------~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E 167 (201)
..-.+.+..=+.+ ..|-+... +. .-+...|....+ ++..++-|+=..-++.++
T Consensus 82 ~lp~~ck~~~~~v~kvaDvL~QlL~td----d~----~E~~~v~~sL~~-ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 82 GLPQLCKDNPEHVSKVADVLVQLLQTD----DP----VELDAVKNSLMS-LLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HGGGG--T--T-HHHHHHHHHHHTT-------H----HHHHHHHHHHHH-HHHH-HHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhHHHHHHHHHHhcc----cH----HHHHHHHHHHHH-HHhcCcHHHHHHHHHHHH
Confidence 9888887543111 11222211 11 123456666666 556666666666665554
No 36
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.00 E-value=4.1 Score=43.99 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=51.5
Q ss_pred CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhH--HHHHHHhhccCChhHHHHHHhhh
Q 028959 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL--MPVLLAFLRDGDSGVAGKSIVCG 107 (201)
Q Consensus 40 dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~--v~~L~~LL~D~~~~VvK~aI~~~ 107 (201)
+|+++++|++-|.+=..|...-|||-|+-.++++|-..|.+...+ ..-+..=.+|+--+|.|=+-.++
T Consensus 886 ~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf 955 (1692)
T KOG1020|consen 886 IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETF 955 (1692)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 799999999999999999999999999999999999887664333 33333334476555666554433
No 37
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.75 E-value=1.9 Score=43.38 Aligned_cols=65 Identities=29% Similarity=0.315 Sum_probs=59.1
Q ss_pred CchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHh
Q 028959 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIV 105 (201)
Q Consensus 41 p~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~ 105 (201)
|+|.-.+-+.++.+-...-+=|||--+..+=.+|.++||-+..+.|.|..=|+|+||+|+--|+-
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~ 203 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVS 203 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHH
Confidence 67888899999998888788899999999999999999999999999999999999999877765
No 38
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=85.09 E-value=11 Score=28.35 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=53.9
Q ss_pred hhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCC
Q 028959 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (201)
Q Consensus 77 ~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~ 156 (201)
-.+++..+++.++..+.|+|+-|=--|..+..++-+.+= +..+..++++=+.+++ +....++
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-----------------~~~l~~f~~IF~~L~k-l~~D~d~ 82 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR-----------------GEILPYFNEIFDALCK-LSADPDE 82 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH-HHcCCch
Confidence 378999999999999999999997777776666654332 4566677788888888 5566667
Q ss_pred chhHHHHHhhhH
Q 028959 157 GTKLLALKFLET 168 (201)
Q Consensus 157 GVr~~aiKF~E~ 168 (201)
.||-.| .++-+
T Consensus 83 ~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 83 NVRSAA-ELLDR 93 (97)
T ss_pred hHHHHH-HHHHH
Confidence 788777 34433
No 39
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.18 E-value=11 Score=33.04 Aligned_cols=73 Identities=8% Similarity=0.012 Sum_probs=56.7
Q ss_pred hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh----------chhhhhhhHHHHHHHhhc--------cCChhHHHHHH
Q 028959 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGL----------KAMEHSSILMPVLLAFLR--------DGDSGVAGKSI 104 (201)
Q Consensus 43 ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~----------~~~el~~~~v~~L~~LL~--------D~~~~VvK~aI 104 (201)
.++-++|.+|.+.-|.++++|...+..+..... +++.+....-+.|.-.|. ++.+.++..|.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 677889999999999999999999987776654 344445555555555555 77899999999
Q ss_pred hhhhhhhHHHH
Q 028959 105 VCGTNFFCRVL 115 (201)
Q Consensus 105 ~~~t~lyr~~L 115 (201)
-|...||+...
T Consensus 196 ~~L~~L~~~~~ 206 (282)
T PF10521_consen 196 PALLSLLKTQE 206 (282)
T ss_pred HHHHHHHHhhc
Confidence 99999988654
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.04 E-value=6.1 Score=40.33 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=48.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 028959 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA 90 (201)
Q Consensus 11 ~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~ 90 (201)
+.|-.+....|...+...+..+.++= ++ +...+.++....|++..||+-.+.-|++++. +..++.|..
T Consensus 778 ~~L~~ll~D~d~~VR~aA~~aLg~~g---~~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~ 845 (897)
T PRK13800 778 DAVRALTGDPDPLVRAAALAALAELG---CP---PDDVAAATAALRASAWQVRQGAARALAGAAA------DVAVPALVE 845 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcC---Cc---chhHHHHHHHhcCCChHHHHHHHHHHHhccc------cchHHHHHH
Confidence 33333333344445555555554431 22 1122334555566667777777777765542 344567777
Q ss_pred hhccCChhHHHHHHhhhhh
Q 028959 91 FLRDGDSGVAGKSIVCGTN 109 (201)
Q Consensus 91 LL~D~~~~VvK~aI~~~t~ 109 (201)
+|+|+++.|-+.|+.+...
T Consensus 846 ~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 846 ALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred HhcCCCHHHHHHHHHHHhc
Confidence 7777777777777766555
No 41
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=82.54 E-value=2 Score=26.47 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.8
Q ss_pred hHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 83 ~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
.++|.|..||+++++.|.+.+.-+..+|
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999888876
No 42
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.28 E-value=8.7 Score=39.31 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhH
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSS-ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~-~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~ 84 (201)
.+.+..+||.= .| ..|++.++.+--++-+ +| ..+|||.++.-....+++|||.|-=++-.-+-.+|.+..-.
T Consensus 37 ~~dL~~lLdSn---kd-~~KleAmKRIia~iA~G~d---vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLS 109 (968)
T KOG1060|consen 37 HDDLKQLLDSN---KD-SLKLEAMKRIIALIAKGKD---VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLS 109 (968)
T ss_pred hHHHHHHHhcc---cc-HHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeee
Confidence 45666777643 34 4899999988887754 24 67789999988899999999998766655555444444444
Q ss_pred HHHHHHhhccCChh
Q 028959 85 MPVLLAFLRDGDSG 98 (201)
Q Consensus 85 v~~L~~LL~D~~~~ 98 (201)
+.++..-|.|.|+-
T Consensus 110 IntfQk~L~DpN~L 123 (968)
T KOG1060|consen 110 INTFQKALKDPNQL 123 (968)
T ss_pred HHHHHhhhcCCcHH
Confidence 44444444444433
No 43
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.82 E-value=11 Score=31.13 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=51.2
Q ss_pred hhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhh
Q 028959 16 ANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI 83 (201)
Q Consensus 16 A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~ 83 (201)
.-.++|...+...+. +=+++++..=.---+.+|.++.+..|+++.+|+-....+.+.+.||+.++..
T Consensus 16 ~~~~~~~~vr~~Al~-~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 16 LCLSSDDSVRLAALQ-VLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHhCCCHHHHHHHHH-HHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444566556666666 4445556554445689999999999999999999999999999999887544
No 44
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.26 E-value=42 Score=32.97 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHH----HHhhch-hhhh
Q 028959 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIE----DIGLKA-MEHS 81 (201)
Q Consensus 7 ~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fie----e~c~~~-~el~ 81 (201)
.++.+||..-..+-+. +=.....++--||-+++.-...++|.-+++++.-++...||++-.-|= .+-+++ .+=+
T Consensus 19 ~el~dLL~~~~~~lp~-~Lr~~i~~~LiLLrNk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~kl 97 (616)
T KOG2229|consen 19 SELKDLLRTNHTVLPP-ELREKIVKALILLRNKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDKL 97 (616)
T ss_pred HHHHHHHHhccccCCH-HHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccchH
Confidence 4778889888877443 334445556666667777777788888888998888888998765444 333444 3445
Q ss_pred hhHHH-HHHHhhccCChhHHHHHHhhhhhhhHH
Q 028959 82 SILMP-VLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 82 ~~~v~-~L~~LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
.++++ .+..||+++|+.-.|.|...+.-||+.
T Consensus 98 nkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr 130 (616)
T KOG2229|consen 98 NKSLQAFMFSMLDQSDSTAAKMALDTMIELYKR 130 (616)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh
Confidence 55555 566789999999999999999999983
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.06 E-value=12 Score=38.30 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHh
Q 028959 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIG 74 (201)
Q Consensus 7 ~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c 74 (201)
+.+++.|.++...+|...+...+..+.++.-.. ++ .+.+.....|+++.||.-+++.|.+..
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~~-----~~~L~~~L~~~d~~VR~~A~~aL~~~~ 712 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-PP-----APALRDHLGSPDPVVRAAALDVLRALR 712 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-Cc-----hHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 345566666666666667777766666653211 11 012222223456666666666665543
No 46
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.16 E-value=9.3 Score=38.53 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhh--hhhHHHHHHHhhccCCh
Q 028959 20 GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH--SSILMPVLLAFLRDGDS 97 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el--~~~~v~~L~~LL~D~~~ 97 (201)
.|-...+..|+ +|-+-.-..+......++.+..-..|.++.|||-++--++....-++++ -.-.++.|..|+.|+||
T Consensus 96 ~d~np~iR~lA-lrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p 174 (734)
T KOG1061|consen 96 EDPNPLIRALA-LRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNP 174 (734)
T ss_pred CCCCHHHHHHH-hhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCc
Confidence 34445666665 6666666678899999999999999999999999999999888877655 45678999999999999
Q ss_pred hHHHHHHhhhhhh
Q 028959 98 GVAGKSIVCGTNF 110 (201)
Q Consensus 98 ~VvK~aI~~~t~l 110 (201)
.||-.|..+-..|
T Consensus 175 ~VVAnAlaaL~eI 187 (734)
T KOG1061|consen 175 MVVANALAALSEI 187 (734)
T ss_pred hHHHHHHHHHHHH
Confidence 9998887765444
No 47
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.86 E-value=48 Score=34.07 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=101.1
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHH
Q 028959 10 LSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVL 88 (201)
Q Consensus 10 ~~lLn~A~~~-~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L 88 (201)
-+|++.+... .|. .+.+.|.=.|++-||...-+++-+-+.=.++-+..+.--+++||...|.+.|+.-.+-+..+
T Consensus 173 peLi~~fL~~e~Dp----sCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i 248 (948)
T KOG1058|consen 173 PELIESFLLTEQDP----SCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCI 248 (948)
T ss_pred HHHHHHHHHhccCc----hhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHH
Confidence 3566666554 443 56788888888999998888888888877887888888999999999999999999999999
Q ss_pred HHhhccCChhHHH-------------HHHhhhhhhhHHHHHHHhhhhhccCc-c-----hhhHHHHHHHHHHhHHHHHHH
Q 028959 89 LAFLRDGDSGVAG-------------KSIVCGTNFFCRVLEEITMQFRWHGK-V-----ERWLEELWTWMVRFKDAVFAI 149 (201)
Q Consensus 89 ~~LL~D~~~~VvK-------------~aI~~~t~lyr~~L~~~~~q~i~~~~-~-----~~~~~~~W~~m~~lK~~Il~~ 149 (201)
..||..++++|+= .+|.++++-|-..+..... .+-+ + .+....-=..|..+--+|++
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd---nnvklIvldrl~~l~~~~~~il~~l~mDvLr- 324 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD---NNVKLIVLDRLSELKALHEKILQGLIMDVLR- 324 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC---cchhhhhHHHHHHHhhhhHHHHHHHHHHHHH-
Confidence 9999977766643 3444555555444422221 0001 0 00111111235556677888
Q ss_pred hccCCCCchhHHHHHhh
Q 028959 150 ALEPGLVGTKLLALKFL 166 (201)
Q Consensus 150 ~~~s~n~GVr~~aiKF~ 166 (201)
.+++.+-.||--|+-|.
T Consensus 325 vLss~dldvr~Ktldi~ 341 (948)
T KOG1058|consen 325 VLSSPDLDVRSKTLDIA 341 (948)
T ss_pred HcCcccccHHHHHHHHH
Confidence 77888878877666554
No 48
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.67 E-value=19 Score=36.99 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=66.4
Q ss_pred CchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHH
Q 028959 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEI 118 (201)
Q Consensus 41 p~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~ 118 (201)
|...|..+-.|=+...|+++-|||-.+--|-+.-.-+++.=..++..+-.||.|.+|.|+-.|+.++..+||.=|+.+
T Consensus 138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLI 215 (968)
T KOG1060|consen 138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI 215 (968)
T ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh
Confidence 445555555555777999999999999998888887887777999999999999999999999999999999888554
No 49
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=77.59 E-value=18 Score=34.50 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHh---hccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHH
Q 028959 58 PESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF---LRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEE 134 (201)
Q Consensus 58 ~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~L---L~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~ 134 (201)
.+...|.+.-+-|+.+++++|.+...=+.-+..| |.++++. ++.+||-+-+---.++ ....... .
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~e-vr~sIqeALssl~~af-----~~~~~~~---~--- 453 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPE-VRVSIQEALSSLAPAF-----KDLPDDE---D--- 453 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchH-HHHHHHHHHHHHHHHH-----hccccch---h---
Confidence 4677999999999999999998875545544444 4455444 4455554433333333 1111100 0
Q ss_pred HHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHh
Q 028959 135 LWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (201)
Q Consensus 135 ~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~v 169 (201)
.........++....++....+|..|+||+.++
T Consensus 454 --~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 454 --EQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred --HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 001111122222133456677999999999987
No 50
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=77.02 E-value=9.9 Score=27.74 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=49.8
Q ss_pred hHHhhhHHHhhh-ccCcchhHHHHHHHHHHHHhhchhhhhh----hHHHHHHHhhccCChhHHHHHHhhhhh
Q 028959 43 LAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSS----ILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (201)
Q Consensus 43 ll~~fl~~il~f-~~d~~~~VRk~v~~fiee~c~~~~el~~----~~v~~L~~LL~D~~~~VvK~aI~~~t~ 109 (201)
+=.+||..+..+ ...++.+||..+++-|..+...+-+.+. .+...|..-..|++..+++.|.++...
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 446677777765 6778999999999999988876655543 455555555668899999999888653
No 51
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=75.33 E-value=13 Score=39.78 Aligned_cols=89 Identities=20% Similarity=0.306 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHhhccCC-CchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh-------chh-hhhhhHHHHHHHhh
Q 028959 22 LAVKLSSLKQVRGILSSAD-PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL-------KAM-EHSSILMPVLLAFL 92 (201)
Q Consensus 22 ~~~Kl~~L~q~~elll~~d-p~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~-------~~~-el~~~~v~~L~~LL 92 (201)
...|+..|.=++++-..-+ -..||..+|+++.+-.|+.++||..-..-+-++-. .+. =+...+.|.|.+|+
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 3468998888888877654 45999999999999999999999887766655444 111 22345789999999
Q ss_pred ccCChhHHHHHHhhhhhh
Q 028959 93 RDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 93 ~D~~~~VvK~aI~~~t~l 110 (201)
.|.++..|+-+...+...
T Consensus 517 ~d~~~~~vRiayAsnla~ 534 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQ 534 (1431)
T ss_pred ccCccceehhhHHhhHHH
Confidence 999888888887655443
No 52
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=73.72 E-value=29 Score=25.51 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~ 77 (201)
+.++-.+|.++-..+|..+=. ..++|+- -|++.++|+..++....+.+..-|+.+...+...|+++
T Consensus 2 rk~i~~~l~ey~~~~d~~ea~---~~l~el~---~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 2 RKKIFSILMEYFSSGDVDEAV---ECLKELK---LPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHHHHHT-HHHHH---HHHHHTT----GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhcCCCHHHHH---HHHHHhC---CCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 457778888888888854444 4445542 34889999999999999999999999999999999765
No 53
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.47 E-value=45 Score=31.40 Aligned_cols=129 Identities=20% Similarity=0.248 Sum_probs=82.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCch----HHhhhHHHhhhccCcchhHHHHHHHHHHHH----hhch-hh
Q 028959 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSL----AAELFPYLVELQSSPESLVRKSLIETIEDI----GLKA-ME 79 (201)
Q Consensus 9 v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~l----l~~fl~~il~f~~d~~~~VRk~v~~fiee~----c~~~-~e 79 (201)
.-+||.+-+- .++..|-+-|..++.++.+ +|+- +.+.++.+.+...|.+..||.-...+++.+ |+.+ --
T Consensus 60 lkeLl~qlkH-hNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKH-HNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcC-chHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 3566666554 5566899999999999988 8874 457888888999999999999988887763 4333 22
Q ss_pred hhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhcc
Q 028959 80 HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALE 152 (201)
Q Consensus 80 l~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~ 152 (201)
+++-.++-+..-+..-.|.| +..+..|=..|-+-+ .+.+....|.++..+++-|=..-+.
T Consensus 138 ~~~l~~~yi~~AMThit~~i-----~~dslkfL~~Ll~~~--------~p~~~~~~~~il~n~~d~i~~~~~~ 197 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEI-----QEDSLKFLSLLLERY--------PDTFSRYASKILENFKDVISKLQFY 197 (393)
T ss_pred hHHHHHHHHHHHHhhccHHH-----HHhhHHHHHHHHHHc--------ChHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444455555555555543 334444433331111 2345667777777777777664443
No 54
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=71.86 E-value=75 Score=28.52 Aligned_cols=147 Identities=9% Similarity=0.137 Sum_probs=96.2
Q ss_pred HHHHHHHH----HHHhhccCCCchHHhhhHHHhhhccC---cchhHHHHHHHHHHHHhhch--------hhhhhhHHHHH
Q 028959 24 VKLSSLKQ----VRGILSSADPSLAAELFPYLVELQSS---PESLVRKSLIETIEDIGLKA--------MEHSSILMPVL 88 (201)
Q Consensus 24 ~Kl~~L~q----~~elll~~dp~ll~~fl~~il~f~~d---~~~~VRk~v~~fiee~c~~~--------~el~~~~v~~L 88 (201)
+-++++.. +++.+...-|..++.+++..++...+ ..++.|...-.+|..++... ++....++..+
T Consensus 91 evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi 170 (319)
T PF08767_consen 91 EVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI 170 (319)
T ss_dssp HHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Confidence 44544443 44433333344666666666666633 56899999999999888864 45567788888
Q ss_pred HHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHH-HHhHHHHHHHhccCC-CCchhHHHHHhh
Q 028959 89 LAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWM-VRFKDAVFAIALEPG-LVGTKLLALKFL 166 (201)
Q Consensus 89 ~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m-~~lK~~Il~~~~~s~-n~GVr~~aiKF~ 166 (201)
..-+++.+..|...+..+...++..+-. . .++...+-+.+. ..+=..|+.++.|+. ..|.+.+|.=+.
T Consensus 171 ~wg~kh~~~~I~~~~L~~l~~ll~~~~~--------~--~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~ 240 (319)
T PF08767_consen 171 VWGFKHTNREISETGLNILLELLNNVSK--------T--NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILS 240 (319)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHHHHH-----------SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHh--------c--CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence 8888899999999999999888887762 1 122333444443 456677888788854 589999996554
Q ss_pred hHhhhhccCCCCCC
Q 028959 167 ETHVLLFTSDSNDF 180 (201)
Q Consensus 167 E~vIL~qT~~~~d~ 180 (201)
..+-++.......|
T Consensus 241 ~Lf~~ve~~~i~~~ 254 (319)
T PF08767_consen 241 NLFRLVESGSIQVP 254 (319)
T ss_dssp HHHHHHHTT-SSSS
T ss_pred HHHHHHHccccccc
Confidence 44444444333333
No 55
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=71.47 E-value=21 Score=29.96 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=52.1
Q ss_pred hHHhhhHHHhhhccC-cchhHHHHHHHHHHHHhh--------ch----hhhhhhHHHHHHHhhccCCh-hHHHHHHhhhh
Q 028959 43 LAAELFPYLVELQSS-PESLVRKSLIETIEDIGL--------KA----MEHSSILMPVLLAFLRDGDS-GVAGKSIVCGT 108 (201)
Q Consensus 43 ll~~fl~~il~f~~d-~~~~VRk~v~~fiee~c~--------~~----~el~~~~v~~L~~LL~D~~~-~VvK~aI~~~t 108 (201)
+++++++++..--.+ .+.++..|+..|-...|. .+ -++++.++.++..+++-+.. ..++|+..-.-
T Consensus 81 ~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e 160 (174)
T PF04510_consen 81 FMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFE 160 (174)
T ss_pred HHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 455566666643333 457899999999888774 11 58899999999999997765 88988887766
Q ss_pred hhhHH
Q 028959 109 NFFCR 113 (201)
Q Consensus 109 ~lyr~ 113 (201)
++.+.
T Consensus 161 ~~v~~ 165 (174)
T PF04510_consen 161 SFVSR 165 (174)
T ss_pred HHHHH
Confidence 66554
No 56
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.42 E-value=58 Score=31.74 Aligned_cols=118 Identities=10% Similarity=0.118 Sum_probs=79.0
Q ss_pred CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhc----hhhhhhhHH-HHHHHhhccCChhHHHHHHhhhhhhhHHH
Q 028959 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK----AMEHSSILM-PVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (201)
Q Consensus 40 dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~----~~el~~~~v-~~L~~LL~D~~~~VvK~aI~~~t~lyr~~ 114 (201)
+-.++.+++..+.+=+.|++.-+|.-.+.-|.-...- -..|-+.++ ..+..|..|.+..|+=.++.|-+.+-..+
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 3468999999999999999999998877655533221 123333333 35666677778889999998888766544
Q ss_pred HHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhhcc
Q 028959 115 LEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (201)
Q Consensus 115 L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~qT 174 (201)
- -|-. + .-+..+-.++.. +|+++++-.|+.|+-..+.+--+-+
T Consensus 332 ~-----~~~l--------~---~~~l~ialrlR~-l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 332 S-----NDDL--------E---SYLLNIALRLRT-LFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred h-----hcch--------h---hhchhHHHHHHH-HHHhcChhhhhhHHHHHHHHHHHcC
Confidence 4 1111 1 112344556666 8999999999999977666644333
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.98 E-value=59 Score=33.44 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=53.6
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHh
Q 028959 12 LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF 91 (201)
Q Consensus 12 lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~L 91 (201)
-|+.-.++++--+-.-.|..+-.+. .|++.+...|++-++...+++-|||--+==.-..-+|.|++....++.-..+
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~l 187 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKL 187 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHH
Confidence 3333344444333444444444433 4556666666666655556666666655444455556666666666666666
Q ss_pred hccCChhHHHHHHhhhhhhh
Q 028959 92 LRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 92 L~D~~~~VvK~aI~~~t~ly 111 (201)
|.|.+++|.-.++.-++.+.
T Consensus 188 L~ek~hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 188 LCEKHHGVLIAGLHLITELC 207 (866)
T ss_pred HhhcCCceeeeHHHHHHHHH
Confidence 66666666555554444443
No 58
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=68.64 E-value=30 Score=25.56 Aligned_cols=61 Identities=16% Similarity=0.018 Sum_probs=49.3
Q ss_pred cCcchhHHHHHHHHHHHHhhch----hhhhhhHHHHHHHhhccC--ChhHHHHHHhhhhhhhHHHHH
Q 028959 56 SSPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDG--DSGVAGKSIVCGTNFFCRVLE 116 (201)
Q Consensus 56 ~d~~~~VRk~v~~fiee~c~~~----~el~~~~v~~L~~LL~D~--~~~VvK~aI~~~t~lyr~~L~ 116 (201)
.|..-.+|.+-+..+..+|+++ +.+-+++..++...+.|+ +....=.||.+...+=+.+.+
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~vr 82 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAVR 82 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999975 789999999999999977 455677777777777666663
No 59
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=68.52 E-value=1.6e+02 Score=32.62 Aligned_cols=135 Identities=19% Similarity=0.233 Sum_probs=93.1
Q ss_pred CCChHHHHHHHHHHHHhhccCCCchH--HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCC
Q 028959 19 HGDLAVKLSSLKQVRGILSSADPSLA--AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD 96 (201)
Q Consensus 19 ~~d~~~Kl~~L~q~~elll~~dp~ll--~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~ 96 (201)
.+-++-+...|+-+-.++ ..||+.| +..-..+-.=-.|.+.-||-.+++.++.--..++++..+--+.+..=..|..
T Consensus 827 e~~ialRtkAlKclS~iv-e~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtg 905 (1692)
T KOG1020|consen 827 ENAIALRTKALKCLSMIV-EADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTG 905 (1692)
T ss_pred CchHHHHHHHHHHHHHHH-hcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCc
Confidence 344556777777776666 6799866 5555555555589999999999999999999999999999999988889999
Q ss_pred hhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCc-hh-HHHHHhhhHhhhhcc
Q 028959 97 SGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG-TK-LLALKFLETHVLLFT 174 (201)
Q Consensus 97 ~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~G-Vr-~~aiKF~E~vIL~qT 174 (201)
.+|=||||. +++++|.. .........+=.++++ .. ++-+| |+ +.+-=|.+.+ ||
T Consensus 906 vsVRKRvIK--------Ilrdic~e-----------~pdf~~i~~~cakmlr-Rv-~DEEg~I~kLv~etf~klW---F~ 961 (1692)
T KOG1020|consen 906 VSVRKRVIK--------ILRDICEE-----------TPDFSKIVDMCAKMLR-RV-NDEEGNIKKLVRETFLKLW---FT 961 (1692)
T ss_pred hhHHHHHHH--------HHHHHHHh-----------CCChhhHHHHHHHHHH-Hh-ccchhHHHHHHHHHHHHHh---cc
Confidence 999999996 45555531 1223334444455555 33 44455 54 4444466655 55
Q ss_pred CCCC
Q 028959 175 SDSN 178 (201)
Q Consensus 175 ~~~~ 178 (201)
|-+.
T Consensus 962 p~~~ 965 (1692)
T KOG1020|consen 962 PVPE 965 (1692)
T ss_pred CCCc
Confidence 4443
No 60
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.71 E-value=13 Score=32.62 Aligned_cols=87 Identities=18% Similarity=0.154 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhccCCCc------hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChh
Q 028959 25 KLSSLKQVRGILSSADPS------LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSG 98 (201)
Q Consensus 25 Kl~~L~q~~elll~~dp~------ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~ 98 (201)
+.++..+=+++==+.+|+ +|+-|++++-+.-++-.---|.=+.++|..-+.|-.-.+|+++..|..-|...|-.
T Consensus 91 s~~~~~k~~~l~W~~~pe~Ldy~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~e 170 (262)
T KOG3961|consen 91 SLEHGSKGRKLQWECDPEKLDYCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDE 170 (262)
T ss_pred ecccCCCCCccccccCHHhccchHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHH
Confidence 333333334444444554 88999999999988877777888889999888888899999999999999988989
Q ss_pred HHHHHHhhhhhhh
Q 028959 99 VAGKSIVCGTNFF 111 (201)
Q Consensus 99 VvK~aI~~~t~ly 111 (201)
|.++..+...+|-
T Consensus 171 v~~~~Lkvlq~lv 183 (262)
T KOG3961|consen 171 VICRTLKVLQQLV 183 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9888777655443
No 61
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.61 E-value=49 Score=33.80 Aligned_cols=88 Identities=20% Similarity=0.152 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhccCCCc--hHHhhhHHHhhhccCcchhHHHHHHHHHHHH----hhchhhhhhhHHHHHHHhhccCCh
Q 028959 24 VKLSSLKQVRGILSSADPS--LAAELFPYLVELQSSPESLVRKSLIETIEDI----GLKAMEHSSILMPVLLAFLRDGDS 97 (201)
Q Consensus 24 ~Kl~~L~q~~elll~~dp~--ll~~fl~~il~f~~d~~~~VRk~v~~fiee~----c~~~~el~~~~v~~L~~LL~D~~~ 97 (201)
.=++.|+.--+-+-+.++. +++.||..+|-+...++-.||.-+...|.-+ +-.+..+...+...|+.=|.|.-|
T Consensus 61 RIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep 140 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP 140 (892)
T ss_pred HHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc
Confidence 3445666666666666664 8999999999999999999999998888754 345677788888888888889999
Q ss_pred hHHHHHHhhhhhhh
Q 028959 98 GVAGKSIVCGTNFF 111 (201)
Q Consensus 98 ~VvK~aI~~~t~ly 111 (201)
+|=.+|+.|.+-+-
T Consensus 141 ~VRiqAv~aLsrlQ 154 (892)
T KOG2025|consen 141 NVRIQAVLALSRLQ 154 (892)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999998876553
No 62
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=67.38 E-value=44 Score=24.66 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~ 77 (201)
+.++-.+++++-.++|..+=.+.|. +|- -|++.++|+..++....|.+..-|+.++.+++..|+.+
T Consensus 2 ~k~i~~~l~ey~~~~D~~ea~~~l~---~L~---~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 2 KKKIFLIIEEYLSSGDTDEAVHCLL---ELK---LPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHH---HhC---CCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 4577889999998888765555554 332 34688999999999888887789999999999999766
No 63
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=67.11 E-value=29 Score=30.47 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=55.2
Q ss_pred hHHhhhHHHh-hhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 43 LAAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 43 ll~~fl~~il-~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
-+..++++++ +-....+.+||+..+.-++-.|.-+.++...-++.+...+..+++.|--.++++...+.
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll 92 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLL 92 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5568888888 44566666999999999999999999999999999999887667777666666654443
No 64
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=66.84 E-value=59 Score=27.98 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=57.7
Q ss_pred hhhHHHhhhc-cCc-chhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccC----ChhHHHHHHhhhhhhhHHHHHHHh
Q 028959 46 ELFPYLVELQ-SSP-ESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG----DSGVAGKSIVCGTNFFCRVLEEIT 119 (201)
Q Consensus 46 ~fl~~il~f~-~d~-~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~----~~~VvK~aI~~~t~lyr~~L~~~~ 119 (201)
.+|+.++.+. .+. ++.+=--++.=+.-+.|+.|++.++++++|..+=-+. .+..-|-.+.+.---+|..|
T Consensus 114 ~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l---- 189 (239)
T PF11935_consen 114 GLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFL---- 189 (239)
T ss_dssp HHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHH----
Confidence 4677888644 455 5667777777788888999999999999999987765 56667778888888889888
Q ss_pred hhhhccCc
Q 028959 120 MQFRWHGK 127 (201)
Q Consensus 120 ~q~i~~~~ 127 (201)
.++.+++
T Consensus 190 -~~llk~~ 196 (239)
T PF11935_consen 190 -LHLLKHP 196 (239)
T ss_dssp -HHHHTSG
T ss_pred -HHHHCCC
Confidence 6666665
No 65
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=65.99 E-value=55 Score=29.81 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=48.6
Q ss_pred HHHHHHHhhccCCCc---hHHhhhHHHhhhc----------cCcchhHHHHHHHHHHHHhhch----hhhhhhHHHHHHH
Q 028959 28 SLKQVRGILSSADPS---LAAELFPYLVELQ----------SSPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLA 90 (201)
Q Consensus 28 ~L~q~~elll~~dp~---ll~~fl~~il~f~----------~d~~~~VRk~v~~fiee~c~~~----~el~~~~v~~L~~ 90 (201)
.++-++-|+.+..-. ++.+++|.++... .+..-.+|.+-+.++..+|++. +.+.+++..+|..
T Consensus 237 lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k 316 (343)
T cd08050 237 LMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLK 316 (343)
T ss_pred HHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 344444444433222 6677888887544 2344589999999999999965 7899999998887
Q ss_pred hhccCC
Q 028959 91 FLRDGD 96 (201)
Q Consensus 91 LL~D~~ 96 (201)
-|-|++
T Consensus 317 ~l~d~~ 322 (343)
T cd08050 317 ALLDPK 322 (343)
T ss_pred HHcCCC
Confidence 777764
No 66
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=65.81 E-value=8.2 Score=22.80 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=22.1
Q ss_pred HHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 84 LMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 84 ~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
+++.|..||..+++.+++.++.+..+|
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 677788888888899999988887765
No 67
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=65.11 E-value=88 Score=26.69 Aligned_cols=141 Identities=15% Similarity=0.105 Sum_probs=94.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 028959 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA 90 (201)
Q Consensus 11 ~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~ 90 (201)
.++..+....+..-+...|+.+-++.-|++ ...+-++..+..+...+..+.+=.....+-..-++++-..+.+-+.|..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~ 82 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLL 82 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 355556666888889999999999999988 8888999999999988888887677777777777776554333333332
Q ss_pred h-hc-----cCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHH
Q 028959 91 F-LR-----DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALK 164 (201)
Q Consensus 91 L-L~-----D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiK 164 (201)
+ ++ -+...-...-|.+++++.+.+- .. ++.|.-|...=..+++ ++.++.++..|+.
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~----------~~-----p~~g~~ll~~ls~~L~---~~~~~~~~alale 144 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICC----------SR-----PDHGVDLLPLLSGCLN---QSCDEVAQALALE 144 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHH----------hC-----hhhHHHHHHHHHHHHh---ccccHHHHHHHHH
Confidence 1 01 0122223334444444444333 22 2377777777777776 7788889999998
Q ss_pred hhhHhh
Q 028959 165 FLETHV 170 (201)
Q Consensus 165 F~E~vI 170 (201)
++..+-
T Consensus 145 ~l~~Lc 150 (234)
T PF12530_consen 145 ALAPLC 150 (234)
T ss_pred HHHHHH
Confidence 887654
No 68
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=65.08 E-value=69 Score=32.15 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=67.7
Q ss_pred HHHhhcc-CCCchHHhhhHHHhhhc-----cCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHH---hhccCChhHHHH
Q 028959 32 VRGILSS-ADPSLAAELFPYLVELQ-----SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA---FLRDGDSGVAGK 102 (201)
Q Consensus 32 ~~elll~-~dp~ll~~fl~~il~f~-----~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~---LL~D~~~~VvK~ 102 (201)
.-|+.+. .+|+++...+..+.... .|-+.-+|---.-=+..-|...|++.-+.. -|.+ +|.|...+|=+.
T Consensus 255 ~ne~~l~~ln~sl~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~-~lry~GW~LSDn~~~vRl~ 333 (740)
T COG5537 255 MNELALYDLNPSLIRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL-GLRYNGWSLSDNHEGVRLL 333 (740)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh-cccccccccccchHHHHHH
Confidence 3344444 47888666665555321 455554553333233334444466655553 2222 266777777555
Q ss_pred HHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhh
Q 028959 103 SIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (201)
Q Consensus 103 aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~ 172 (201)
+.. ++.+++ .+.+..+ ..=.-+..||++|+.+.. .+.+.||+|++|-++..=.+
T Consensus 334 v~K--------il~~L~----s~~p~~d---~ir~f~eRFk~rILE~~r-~D~d~VRi~sik~l~~lr~l 387 (740)
T COG5537 334 VSK--------ILLFLC----SRIPHTD---AIRRFVERFKDRILEFLR-TDSDCVRICSIKSLCYLRIL 387 (740)
T ss_pred HHH--------HHHHHH----hcCCcch---HHHHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHh
Confidence 432 232222 2222222 455567789999999554 44444999999998876433
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.37 E-value=14 Score=37.73 Aligned_cols=73 Identities=16% Similarity=0.317 Sum_probs=52.6
Q ss_pred hhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCC
Q 028959 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (201)
Q Consensus 77 ~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~ 156 (201)
.+|+++.+.|-+-.||...+|.|-|+|++|+..+.|.+=+.+- .-..+++..++. .+.
T Consensus 136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----------------~f~~~~~~lL~e-----k~h 193 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----------------HFVIAFRKLLCE-----KHH 193 (866)
T ss_pred CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----------------HhhHHHHHHHhh-----cCC
Confidence 3899999999999999999999999999999877765543331 112234444443 567
Q ss_pred chhHHHHHhhhHhhh
Q 028959 157 GTKLLALKFLETHVL 171 (201)
Q Consensus 157 GVr~~aiKF~E~vIL 171 (201)
||-+.+++++-..+-
T Consensus 194 GVL~~~l~l~~e~c~ 208 (866)
T KOG1062|consen 194 GVLIAGLHLITELCK 208 (866)
T ss_pred ceeeeHHHHHHHHHh
Confidence 888777777766653
No 70
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.06 E-value=47 Score=33.01 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=55.5
Q ss_pred HHHhhccCCCc-hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh----chhhhhhhHHHHHHHhhccCChhHHHH
Q 028959 32 VRGILSSADPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGL----KAMEHSSILMPVLLAFLRDGDSGVAGK 102 (201)
Q Consensus 32 ~~elll~~dp~-ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~----~~~el~~~~v~~L~~LL~D~~~~VvK~ 102 (201)
.++.+.+.++. -+++|+|=+=+=..+-++..|.|++++|--.-. +...+++...+-|..+|.|+++.|-..
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~ 227 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTL 227 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHH
Confidence 45555565655 578888877777788899999999999985443 336789999999999999999887543
No 71
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.90 E-value=72 Score=31.78 Aligned_cols=84 Identities=12% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCc----hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhh-hhhhHH
Q 028959 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME-HSSILM 85 (201)
Q Consensus 11 ~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~----ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~e-l~~~~v 85 (201)
+-|..=-.....+.|+..|+=+..+. ++.|. ..+++++.++.--.|++.+|--...+.+.++|..+.. +.-+.+
T Consensus 339 ~vl~~~l~~~~~~tri~~L~Wi~~l~-~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl 417 (675)
T KOG0212|consen 339 EVLTKYLSDDREETRIAVLNWIILLY-HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFL 417 (675)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHH-hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHH
Confidence 33333334455668999999887766 78886 5689999999888999999999999999999996633 334444
Q ss_pred HHHHHhhccC
Q 028959 86 PVLLAFLRDG 95 (201)
Q Consensus 86 ~~L~~LL~D~ 95 (201)
..|+.+...+
T Consensus 418 ~sLL~~f~e~ 427 (675)
T KOG0212|consen 418 LSLLEMFKED 427 (675)
T ss_pred HHHHHHHhhh
Confidence 4444444444
No 72
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.64 E-value=53 Score=30.37 Aligned_cols=62 Identities=26% Similarity=0.149 Sum_probs=43.2
Q ss_pred hhHHHhhhccCcchhHHHHHH----HHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 47 LFPYLVELQSSPESLVRKSLI----ETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 47 fl~~il~f~~d~~~~VRk~v~----~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
-+.++++|-+++++.|||--+ +|.+.-++.--...-..++.|..|+.|.++ ...|.++.-|+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnl 69 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNL 69 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHH
Confidence 456889999999999999888 666663333345556778888999998877 44444444333
No 73
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=60.62 E-value=20 Score=29.18 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=28.8
Q ss_pred chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHH
Q 028959 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPV 87 (201)
Q Consensus 42 ~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~ 87 (201)
..++.+++-+-....|++--|||-+.-+|.++++++++.+...+..
T Consensus 151 ~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 151 EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3445555555556677777777777777777777777766555544
No 74
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=59.78 E-value=1.2e+02 Score=26.53 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHHHHhhccCC-CchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch---hh-hhhhHHHHHHHhhcc
Q 028959 20 GDLAVKLSSLKQVRGILSSAD-PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA---ME-HSSILMPVLLAFLRD 94 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll~~d-p~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~---~e-l~~~~v~~L~~LL~D 94 (201)
-|.+.+..-|+-+..+-...+ -.++.+.++.++.+-..++..+|-++...+--.+.+. .+ +..++++.+..|++.
T Consensus 107 lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 107 LNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred CCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHcc
Confidence 355567777777777754432 2477888999999888889999999998887665543 22 345677888888886
Q ss_pred C-ChhHHHHHHhhhhhhhHHHHHHH--hhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhH
Q 028959 95 G-DSGVAGKSIVCGTNFFCRVLEEI--TMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKL 160 (201)
Q Consensus 95 ~-~~~VvK~aI~~~t~lyr~~L~~~--~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~ 160 (201)
+ +..++-+++.-+.+|....-... +.+|-.+ .+.+-..+.-...+-+++.+ +.++...-||.
T Consensus 187 ~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~---~~~L~~~~~e~~~~~~~l~~-l~~h~d~ev~~ 251 (254)
T PF04826_consen 187 SESKENLLRVLTFFENINENIKKEAYVFVQDDFS---EDSLFSLFGESSQLAKKLQA-LANHPDPEVKE 251 (254)
T ss_pred CCccHHHHHHHHHHHHHHHhhCcccceeccccCC---chhHHHHHccHHHHHHHHHH-HHcCCCHHHhh
Confidence 4 78999999999999976554221 1122221 22344667777777788888 54554444554
No 75
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=59.39 E-value=43 Score=24.33 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHH
Q 028959 22 LAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIED 72 (201)
Q Consensus 22 ~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee 72 (201)
.++.+..|+++..+|.+ .+..+.+-++.+.+-..+ ++ .-+.+++||++
T Consensus 29 s~~~i~~l~~ayr~l~~-~~~~~~~a~~~l~~~~~~-~~-~v~~~~~Fi~~ 76 (83)
T PF13720_consen 29 SKEEISALRRAYRILFR-SGLTLEEALEELEEEYPD-SP-EVREIVDFIRN 76 (83)
T ss_dssp -HHHHHHHHHHHHHHHT-SSS-HHHHHHHHHHHTTS-CH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhccC-CH-HHHHHHHHHHh
Confidence 34789999999999987 557889999998874333 44 44567889883
No 76
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=58.46 E-value=62 Score=30.10 Aligned_cols=84 Identities=18% Similarity=0.096 Sum_probs=53.9
Q ss_pred HHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-----hhhhhhHHHHHHHhhccCChhHHH
Q 028959 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDGDSGVAG 101 (201)
Q Consensus 27 ~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-----~el~~~~v~~L~~LL~D~~~~VvK 101 (201)
..|...-...+.+||++...++.+|+-+=+-.++.=--..++.|++++..- ..+...+...|...+..++..|+.
T Consensus 236 ~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAE 315 (409)
T PF01603_consen 236 QQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAE 315 (409)
T ss_dssp HHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 456666666678899999999999997754444433334456777776633 234445555566667788888888
Q ss_pred HHHhhhhhh
Q 028959 102 KSIVCGTNF 110 (201)
Q Consensus 102 ~aI~~~t~l 110 (201)
||+....+=
T Consensus 316 rAl~~w~n~ 324 (409)
T PF01603_consen 316 RALYFWNNE 324 (409)
T ss_dssp HHHGGGGSH
T ss_pred HHHHHHCCH
Confidence 888765543
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=58.27 E-value=85 Score=29.48 Aligned_cols=21 Identities=24% Similarity=0.096 Sum_probs=8.9
Q ss_pred HHHhhccCChhHHHHHHhhhh
Q 028959 88 LLAFLRDGDSGVAGKSIVCGT 108 (201)
Q Consensus 88 L~~LL~D~~~~VvK~aI~~~t 108 (201)
|..+|+|++|.|-..++.+..
T Consensus 152 L~~~L~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 152 LEAALTHEDALVRAAALRALG 172 (410)
T ss_pred HHHHhcCCCHHHHHHHHHHHH
Confidence 333344444444444444433
No 78
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=58.03 E-value=44 Score=32.81 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=55.7
Q ss_pred CCchHHhhhHHHhhhc-cCcchhHHHHHHHHHHHHhhch------hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 40 DPSLAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKA------MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 40 dp~ll~~fl~~il~f~-~d~~~~VRk~v~~fiee~c~~~------~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
+|+.+.+.+..+-.+- ..+..-||--+++|+.-.|+.. ...++.+-.-...||+|++..|.-.|+-+++..
T Consensus 473 ~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~F 550 (559)
T PF14868_consen 473 DPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQF 550 (559)
T ss_pred ChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 6778888888877544 6666669999999999999844 245666666667789999999999999988753
No 79
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=56.75 E-value=86 Score=28.37 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=73.6
Q ss_pred HHHhhccC-CCc----hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-hhhhhhHHHHHHHh---hccCChhHHHH
Q 028959 32 VRGILSSA-DPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEHSSILMPVLLAF---LRDGDSGVAGK 102 (201)
Q Consensus 32 ~~elll~~-dp~----ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-~el~~~~v~~L~~L---L~D~~~~VvK~ 102 (201)
+++.++.. .+. -++-+.+++++|-.-.+..||...++++|+--.+- +.+.+-+-+-+..+ |+|++.-+-.+
T Consensus 78 vY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~ 157 (307)
T PF04118_consen 78 VYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDR 157 (307)
T ss_pred HHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHH
Confidence 45555543 333 45678999999999999999999999999776533 34444444444444 55788778777
Q ss_pred HHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhh
Q 028959 103 SIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (201)
Q Consensus 103 aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vI 170 (201)
++...-.+...+= . +---..+|..+. .+..+|..|++|+.+-.
T Consensus 158 ~~~ll~~l~~~v~-----------~-~~F~~~lwl~ii-------------~sp~~Rl~al~~l~~~l 200 (307)
T PF04118_consen 158 TLKLLDKLKEAVG-----------D-KYFWQCLWLCII-------------TSPSRRLGALNYLLRRL 200 (307)
T ss_pred HHHHHHHHHHhcC-----------h-hHHHHHHHHHHh-------------cCcchhHHHHHHHHHhC
Confidence 7766555543211 0 001233443322 57889999999998764
No 80
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.50 E-value=2.9e+02 Score=29.81 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh--ch--------hhhhhhHHHHHHHhhc
Q 028959 24 VKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--KA--------MEHSSILMPVLLAFLR 93 (201)
Q Consensus 24 ~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~--~~--------~el~~~~v~~L~~LL~ 93 (201)
.++..|+.+.+++-..+-.+++..++|++-+..+.+..-|+---+.|-++|+ .. .+-+...++.|...|-
T Consensus 716 ~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 716 SRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
Confidence 3444444444444322347889999999977788888888887777777773 11 2355666666666665
Q ss_pred cCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhhc
Q 028959 94 DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLF 173 (201)
Q Consensus 94 D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~q 173 (201)
.+.+.++=..|.+.+.+|-.-= .+ . -+ +.+.++=+.|+. .+.+.+.-|+-.||+|+=..|..+
T Consensus 796 gd~~~~~as~Ivai~~il~e~~-----~~-l---d~-------~~l~~li~~V~~-~L~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 796 GDSTRVVASDIVAITHILQEFK-----NI-L---DD-------ETLEKLISMVCL-YLASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh-----cc-c---cH-------HHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHcC
Confidence 5666666555766666554221 11 1 11 233455566666 778899999999999998887554
No 81
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=56.36 E-value=62 Score=25.45 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCCh-hHHHHHHhhh
Q 028959 29 LKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDS-GVAGKSIVCG 107 (201)
Q Consensus 29 L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~-~VvK~aI~~~ 107 (201)
|++++.++-.-.|+-++...+++.....+.+.+..+.+++.|=+.+...|.+++ +...|...|....+ .+....+..+
T Consensus 1 ~r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~-~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 1 LRKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSP-LYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHH-HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CchHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHH-HHHHHHHHHhccchhhHHHHHHHHH
Confidence 455666664446777788888887665444777888888887777776664444 33444445555555 5555555555
Q ss_pred hhhhHH
Q 028959 108 TNFFCR 113 (201)
Q Consensus 108 t~lyr~ 113 (201)
-.-|..
T Consensus 80 ~~~f~~ 85 (209)
T PF02854_consen 80 QEEFEE 85 (209)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 82
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=56.17 E-value=98 Score=31.08 Aligned_cols=98 Identities=21% Similarity=0.147 Sum_probs=65.3
Q ss_pred CChHHHHH----HHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccC
Q 028959 20 GDLAVKLS----SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG 95 (201)
Q Consensus 20 ~d~~~Kl~----~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~ 95 (201)
.+.+++++ +|+ +--.+-++.|..+.-|+|++..+-...++.=|-.+--+.--+.-+.++.+.+++|.|..-|.|.
T Consensus 170 v~~~siLSgn~~LLr-vlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds 248 (851)
T KOG3723|consen 170 VIVKSILSGNTMLLR-VLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDS 248 (851)
T ss_pred HHHHHHhccchHHHH-HHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Confidence 45556665 333 3333335677777777777777666666655555555555777788999999999999998876
Q ss_pred C-----hhHHHHHHhhhhhhhHHHHHHH
Q 028959 96 D-----SGVAGKSIVCGTNFFCRVLEEI 118 (201)
Q Consensus 96 ~-----~~VvK~aI~~~t~lyr~~L~~~ 118 (201)
+ ..+.|..-+-+-...+..+|.+
T Consensus 249 ~~~~i~~~Ilk~ia~~~pv~l~~~~E~l 276 (851)
T KOG3723|consen 249 THNDIILNILKEIAVYEPVALNSFLEML 276 (851)
T ss_pred cchhHHHHHHHHHHhcCccchhhHHHHH
Confidence 4 4566666666666666665544
No 83
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=55.86 E-value=1.5e+02 Score=28.85 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhcCCC---hHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhc-cCcchhHHHHHHHHHHHHhhchhhhh
Q 028959 6 RDQALSLLAAANNHGD---LAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAMEHS 81 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d---~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~-~d~~~~VRk~v~~fiee~c~~~~el~ 81 (201)
-+++++.++......| .++....|+++..-+-.-|.. -..++..++.+- ..++..+++..++|+...+..++.++
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl 109 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYL 109 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGH
T ss_pred HHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 4556666643322233 245566666666655333555 667788888775 46899999999999999999999999
Q ss_pred hhHHHHHHHhhccC
Q 028959 82 SILMPVLLAFLRDG 95 (201)
Q Consensus 82 ~~~v~~L~~LL~D~ 95 (201)
..++..|-..+...
T Consensus 110 ~~vl~~LV~~f~p~ 123 (563)
T PF05327_consen 110 SPVLSMLVKNFIPP 123 (563)
T ss_dssp HHHHHHHHHGGGS-
T ss_pred HHHHHHHHHhccCC
Confidence 99999888887754
No 84
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=55.48 E-value=11 Score=39.53 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=70.2
Q ss_pred HHHHHHHhhccCCCchHHhhhHHHh-hhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhh
Q 028959 28 SLKQVRGILSSADPSLAAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVC 106 (201)
Q Consensus 28 ~L~q~~elll~~dp~ll~~fl~~il-~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~ 106 (201)
..-.+-.+++. |-.|+..++|-++ +++......||.-++=-+..+|..++-+.-+-+|.+.+-|.|+++.|=|++|--
T Consensus 951 ~vvTlakmcLa-h~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~il 1029 (1529)
T KOG0413|consen 951 GVVTLAKMCLA-HDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIIL 1029 (1529)
T ss_pred HHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHH
Confidence 33345556655 5567777888888 788888899999999999999999999999999999999999999999998877
Q ss_pred hhhhhH
Q 028959 107 GTNFFC 112 (201)
Q Consensus 107 ~t~lyr 112 (201)
.++|..
T Consensus 1030 L~rLLq 1035 (1529)
T KOG0413|consen 1030 LARLLQ 1035 (1529)
T ss_pred HHHHHh
Confidence 776654
No 85
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=55.47 E-value=1.4e+02 Score=31.16 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh-----chhhhhhhHHHHHHHhhccCChhH
Q 028959 25 KLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL-----KAMEHSSILMPVLLAFLRDGDSGV 99 (201)
Q Consensus 25 Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~-----~~~el~~~~v~~L~~LL~D~~~~V 99 (201)
-+.-+-.+-.-+..+--.+++.++-++|-.-..+++.||.+.++.|..+.+ ...+++.++=-.|...|..++|-|
T Consensus 778 ml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEv 857 (1172)
T KOG0213|consen 778 MLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEV 857 (1172)
T ss_pred hhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHH
Confidence 334444555555454556889999999999999999999999999997776 225677777778888999999999
Q ss_pred HHHHHhhhhhhhHHH
Q 028959 100 AGKSIVCGTNFFCRV 114 (201)
Q Consensus 100 vK~aI~~~t~lyr~~ 114 (201)
+-.++-+.-.||-+.
T Consensus 858 LgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 858 LGSILGAIKAIVNVI 872 (1172)
T ss_pred HHHHHHHHHHHHHhc
Confidence 887777776666655
No 86
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.46 E-value=32 Score=34.88 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=50.7
Q ss_pred CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHH
Q 028959 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAG 101 (201)
Q Consensus 40 dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK 101 (201)
+.+.+++.+.|+.+.+.+-+++.=+..+.=|+.++.|.++- ..+|+.|+.+++-..-.|+.
T Consensus 344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvq 404 (734)
T KOG1061|consen 344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQ 404 (734)
T ss_pred hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceee
Confidence 67788999999999999999997777788889888888877 99999999999944333333
No 87
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=54.85 E-value=1.1e+02 Score=24.61 Aligned_cols=121 Identities=18% Similarity=0.122 Sum_probs=82.2
Q ss_pred CchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-h----hhhhhHHHHHHHhhcc-CChhHHHHHHhhhhhhhHHH
Q 028959 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-M----EHSSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRV 114 (201)
Q Consensus 41 p~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-~----el~~~~v~~L~~LL~D-~~~~VvK~aI~~~t~lyr~~ 114 (201)
.+.++.+...+..+-.+++..-|=..+.++...|... . +....-+..|...|+. +++.+.+-+|.+.+.||..+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999988899999888864 3 3345555666666664 56788899999999999755
Q ss_pred HHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhhcc
Q 028959 115 LEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (201)
Q Consensus 115 L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~qT 174 (201)
- ++-- ..+ |-+=..+..+=...++ +.++ ..+...|+..+..++..+.
T Consensus 100 ~-----~~p~---l~R--ei~tp~l~~~i~~ll~-l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 100 R-----GKPT---LTR--EIATPNLPKFIQSLLQ-LLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred c-----CCCc---hHH--HHhhccHHHHHHHHHH-HHhc--cccHHHHHHHHHHHHHHCC
Confidence 4 2211 111 2222235555555666 3333 6667777777777776554
No 88
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=53.91 E-value=2.3e+02 Score=32.50 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHhhccCCCch-----HHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh-----hhHHHHHHHh
Q 028959 22 LAVKLSSLKQVRGILSSADPSL-----AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLAF 91 (201)
Q Consensus 22 ~~~Kl~~L~q~~elll~~dp~l-----l~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~-----~~~v~~L~~L 91 (201)
.+.|.+.-..+..+.-+ +++. -...++.+++|-.+.+..+++..+..|.-+++...+.. .-.+|.|..|
T Consensus 418 ~evQ~~Av~aL~~L~~~-~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 418 ADVQEELIRALSSLCCG-KGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 44566655555555533 2221 13478889998888889999999999998887553322 4678999999
Q ss_pred hccCChhHHHHHHhhhhhhh------HHHHHH------HhhhhhccCcchhhHHHHHHHHHHhH-------HHHHHHhcc
Q 028959 92 LRDGDSGVAGKSIVCGTNFF------CRVLEE------ITMQFRWHGKVERWLEELWTWMVRFK-------DAVFAIALE 152 (201)
Q Consensus 92 L~D~~~~VvK~aI~~~t~ly------r~~L~~------~~~q~i~~~~~~~~~~~~W~~m~~lK-------~~Il~~~~~ 152 (201)
|+.+++.+.+.|+-+-.||- +.++.. ++ +.+.++...-....+|.-.+-++ ..++. ++.
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV-~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~-LLl 574 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALL-WLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTA-LLL 574 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHH-HHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHH-Hhc
Confidence 99999999999988888763 222211 11 23333433234567776555532 34566 567
Q ss_pred CCCCchhHHHHHhhhH
Q 028959 153 PGLVGTKLLALKFLET 168 (201)
Q Consensus 153 s~n~GVr~~aiKF~E~ 168 (201)
+++..++.+|++=+..
T Consensus 575 sdd~~~~~~aL~vLgn 590 (2102)
T PLN03200 575 GDLPESKVHVLDVLGH 590 (2102)
T ss_pred CCChhHHHHHHHHHHH
Confidence 7888888888874433
No 89
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=52.81 E-value=40 Score=27.07 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=20.6
Q ss_pred HHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccC
Q 028959 50 YLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG 95 (201)
Q Consensus 50 ~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~ 95 (201)
-+.....+.+.=+|++...+.-...++ ......+++.+..++.|+
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~ 153 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDE 153 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCH
Confidence 333455555555555555555444333 223334444444444444
No 90
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.58 E-value=69 Score=32.82 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhccCCC--chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch--hhhhhhHHHHHHHhhc-cCChhH
Q 028959 25 KLSSLKQVRGILSSADP--SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA--MEHSSILMPVLLAFLR-DGDSGV 99 (201)
Q Consensus 25 Kl~~L~q~~elll~~dp--~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~--~el~~~~v~~L~~LL~-D~~~~V 99 (201)
|=..|=.+-.|++|-|+ +++.+-++-+=.|..++++.+|=.-.|=+...|... .+-+.+=.+++...|+ +.|.+|
T Consensus 306 ~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSi 385 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSI 385 (938)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHH
Confidence 44556667777777665 588888888888888888888876665444444332 1223333456666666 677777
Q ss_pred HHHHHh
Q 028959 100 AGKSIV 105 (201)
Q Consensus 100 vK~aI~ 105 (201)
.|||+-
T Consensus 386 rrravD 391 (938)
T KOG1077|consen 386 RRRAVD 391 (938)
T ss_pred HHHHHH
Confidence 777764
No 91
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=51.69 E-value=1.2e+02 Score=34.46 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=56.3
Q ss_pred hhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh-----hhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 46 ~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~-----~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
.-++.+.+++..++..+||.-+..|+.+|..+++.. ...+|.|..+|...+..|.|.+..+-+++++
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 467788888888899999999999999998776543 3567889999999999999999999888885
No 92
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=51.58 E-value=29 Score=29.22 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=38.5
Q ss_pred HHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhh
Q 028959 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH 80 (201)
Q Consensus 27 ~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el 80 (201)
+.+.+.|+.+++ ++..+..+..++.|...++..=|+=|++.|.-.|--...|
T Consensus 86 S~~~~gR~~~l~--~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 86 SQLPEGRQFFLD--PQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred cCCHHHHHHHhC--chhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 445667888874 4434448889999988887777778899999999866544
No 93
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=51.53 E-value=1.1e+02 Score=25.25 Aligned_cols=85 Identities=12% Similarity=0.199 Sum_probs=65.2
Q ss_pred HHHHHHHhhccCCC---chHHhhhHHHhhhccCc--chhHHHHHHHHHHHHhhchhhhhhh-----HHHHHHHhhccCCh
Q 028959 28 SLKQVRGILSSADP---SLAAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKAMEHSSI-----LMPVLLAFLRDGDS 97 (201)
Q Consensus 28 ~L~q~~elll~~dp---~ll~~fl~~il~f~~d~--~~~VRk~v~~fiee~c~~~~el~~~-----~v~~L~~LL~D~~~ 97 (201)
.|....||.-|--- .+-+.|+..++.|...+ ++.+-.--.+++|.+..+.+.+-.. -+++|...|.+.++
T Consensus 37 ~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~ 116 (160)
T PF11841_consen 37 ALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQ 116 (160)
T ss_pred HHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCH
Confidence 48888888876432 37899999999888543 4667778889999999877664333 36789999999999
Q ss_pred hHHHHHHhhhhhhhH
Q 028959 98 GVAGKSIVCGTNFFC 112 (201)
Q Consensus 98 ~VvK~aI~~~t~lyr 112 (201)
.+...+|.-...||.
T Consensus 117 ~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 117 EIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHHHHHHHHh
Confidence 998888877776665
No 94
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.35 E-value=2.3e+02 Score=30.25 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=69.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhccCC---CchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-----hhh
Q 028959 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSAD---PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----MEH 80 (201)
Q Consensus 9 v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~d---p~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-----~el 80 (201)
+.+++-+...+++-.+|-..|-.+--+.-+-. -..||++++-++.+-.|+++.||--...-|+....-- -.+
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 45566666667776666655554433332211 1278999999999999999999977766666554411 123
Q ss_pred hhhHHHHHHHhhccC-ChhHHHHHHhhhhhhhHHHH
Q 028959 81 SSILMPVLLAFLRDG-DSGVAGKSIVCGTNFFCRVL 115 (201)
Q Consensus 81 ~~~~v~~L~~LL~D~-~~~VvK~aI~~~t~lyr~~L 115 (201)
-.++.|-|...+.|. ++-|-..|-.|.-+++--+.
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 334556677777765 67888888777776665444
No 95
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=48.75 E-value=1.1e+02 Score=22.66 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHHhhccCC-Cc-hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhh
Q 028959 20 GDLAVKLSSLKQVRGILSSAD-PS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME 79 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll~~d-p~-ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~e 79 (201)
+..+.|..-|..+++|+.+++ +. .++.+++=++....|+++=|==-.+.-+.+.|..+|+
T Consensus 15 p~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 15 PLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred CCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 667789999999999999887 53 6677777777777888887777777777788877776
No 96
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=48.05 E-value=75 Score=32.46 Aligned_cols=92 Identities=16% Similarity=0.234 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhhc-cCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch--hhhhhhHHHHHHHhhccCChhHH
Q 028959 24 VKLSSLKQVRGILS-SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA--MEHSSILMPVLLAFLRDGDSGVA 100 (201)
Q Consensus 24 ~Kl~~L~q~~elll-~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~--~el~~~~v~~L~~LL~D~~~~Vv 100 (201)
.+...|..+-++.- .-.+..-..|+|-+..+..|+.+.||--++.++..+.+.- +..=..+.|.+..|..|++..|=
T Consensus 573 ~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr 652 (759)
T KOG0211|consen 573 VRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVR 652 (759)
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchh
Confidence 45555555554442 1255677889999999999999999999999999988844 44455667777778889999998
Q ss_pred HHHHhhhhhhhHHHH
Q 028959 101 GKSIVCGTNFFCRVL 115 (201)
Q Consensus 101 K~aI~~~t~lyr~~L 115 (201)
=+|+++.+.+==..+
T Consensus 653 ~~a~~a~~~i~l~~~ 667 (759)
T KOG0211|consen 653 YRAILAFGSIELSRL 667 (759)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888776644444
No 97
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=47.96 E-value=1.4e+02 Score=30.50 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=76.1
Q ss_pred CccchHHHHHHHHHHhhcCCChHHHH--HHHHHHHHh------hc--------cC---CCchHHhhhHHHhhhccCcchh
Q 028959 1 MAAVSRDQALSLLAAANNHGDLAVKL--SSLKQVRGI------LS--------SA---DPSLAAELFPYLVELQSSPESL 61 (201)
Q Consensus 1 ma~s~~~~v~~lLn~A~~~~d~~~Kl--~~L~q~~el------ll--------~~---dp~ll~~fl~~il~f~~d~~~~ 61 (201)
|++-+-+|+++.|--+..-...++++ ..|...||- ++ .. .--+++.++.++|..-..+.++
T Consensus 540 m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~ 619 (975)
T COG5181 540 MNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPD 619 (975)
T ss_pred hhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCcc
Confidence 55556667776666554433332332 234444431 11 11 2236778888999988999999
Q ss_pred HHHHHHHHHHHHhh--c---hhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHH
Q 028959 62 VRKSLIETIEDIGL--K---AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (201)
Q Consensus 62 VRk~v~~fiee~c~--~---~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~ 114 (201)
||-..++.++.+.+ | .++.+.++=..|...|..++|-|+-..+.+.-+||-+.
T Consensus 620 vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 620 VRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 99999998886655 2 26777777777888888889999888888777777643
No 98
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=46.93 E-value=1.4e+02 Score=30.13 Aligned_cols=106 Identities=19% Similarity=0.217 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh--chhhhhhhH
Q 028959 8 QALSLLAAANNHGD-LAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--KAMEHSSIL 84 (201)
Q Consensus 8 ~v~~lLn~A~~~~d-~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~--~~~el~~~~ 84 (201)
+++-.|-.|-.-+| .+..+..|=+....+-. +.+---|.|-++.+=..++..+|=-+.+.|++-.. ...++-..+
T Consensus 293 kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~--~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I 370 (690)
T KOG1243|consen 293 KVLPILLAALEFGDAASDFLTPLFKLGKDLDE--EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQI 370 (690)
T ss_pred HHHHHHHHHhhccccchhhhhHHHHhhhhccc--cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchh
Confidence 44444444444444 55666666666555532 22555677888887778888899889999887665 446788899
Q ss_pred HHHHHHhhccCChhHHHHHHhhhhhhhHHHH
Q 028959 85 MPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (201)
Q Consensus 85 v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L 115 (201)
.|.+..-++|.|+.+.-+.+.++..|-+..=
T Consensus 371 ~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 371 FPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred HHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999998876543
No 99
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=46.21 E-value=16 Score=38.11 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=54.4
Q ss_pred hhhccCc-chhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhhccCCCCCCccccc
Q 028959 121 QFRWHGK-VERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTK 185 (201)
Q Consensus 121 q~i~~~~-~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~qT~~~~d~~~~~~ 185 (201)
+|-...+ .++..+.+|+-+...=+.|.. .+.+.+++|++..++|++..|-+++|...|...+++
T Consensus 10 l~~~~~~~~~e~~~~l~el~~~~~~~i~~-~l~~~~~~i~~~~~~~~~~lv~~ls~~l~d~~~~r~ 74 (957)
T KOG1895|consen 10 LIDVSSSISDELLTELLELLELNDGLIRC-LLVEILLEIGLKDFELCNKLVETLSPYLEDNPIVRR 74 (957)
T ss_pred HhcccccccHhHHHHHHHHHhCCcchhhh-hHHHHHhhhhHHHHHhhhhHHHHhhhhhcCchhhHH
Confidence 5555555 566899999999999999999 889999999999999999999999998888743333
No 100
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=46.06 E-value=1.2e+02 Score=32.11 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=83.2
Q ss_pred hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-----hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHH
Q 028959 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (201)
Q Consensus 43 ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-----~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~ 117 (201)
-+.+.++++..|--...-..|---..++++.-+.+ .+++..++.-+..|+.+.|-.|...++.+.++++..-.
T Consensus 648 ~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p-- 725 (1233)
T KOG1824|consen 648 VLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP-- 725 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc--
Confidence 56777888888765555556666666677666644 57788888889999999999999999988877654322
Q ss_pred HhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccC-CCCchhHHHHHhhhHhhhhccCCC
Q 028959 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEP-GLVGTKLLALKFLETHVLLFTSDS 177 (201)
Q Consensus 118 ~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s-~n~GVr~~aiKF~E~vIL~qT~~~ 177 (201)
...-..++.+=+.|+.++-.+ -..|.--++.+|.|..|....++.
T Consensus 726 ---------------s~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l 771 (1233)
T KOG1824|consen 726 ---------------SSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDL 771 (1233)
T ss_pred ---------------HHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCc
Confidence 122344556777788844333 346777889999999987776554
No 101
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.03 E-value=49 Score=33.68 Aligned_cols=109 Identities=11% Similarity=0.078 Sum_probs=70.5
Q ss_pred hhhccCcchhHHHHHHHHHHHHhhch-hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchh
Q 028959 52 VELQSSPESLVRKSLIETIEDIGLKA-MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVER 130 (201)
Q Consensus 52 l~f~~d~~~~VRk~v~~fiee~c~~~-~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~ 130 (201)
+.=..|+++.+|-.+--.|--+..+. .+.=|.++|.|-.+|..++-..-..|+-+.+-|.--.-+.+
T Consensus 96 l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~l------------ 163 (885)
T KOG2023|consen 96 LHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFL------------ 163 (885)
T ss_pred HhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHH------------
Confidence 33345666666654444444333333 45668888999999998887777777766554443332111
Q ss_pred hHHHHH--HHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhhccC
Q 028959 131 WLEELW--TWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTS 175 (201)
Q Consensus 131 ~~~~~W--~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~qT~ 175 (201)
+.-| .=|+.|-.+-+. .+.+.+.-||.+|++.+-.+|+.+|.
T Consensus 164 --ds~~~~rpl~~mipkfl~-f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 164 --DSDVLTRPLNIMIPKFLQ-FFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred --hhhcccCchHHhHHHHHH-HHhCCChhHHHHHHhhhhheeecCcH
Confidence 1222 124556667777 67888999999999999888888874
No 102
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.02 E-value=1.4e+02 Score=32.25 Aligned_cols=112 Identities=14% Similarity=0.076 Sum_probs=87.9
Q ss_pred hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhh
Q 028959 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQF 122 (201)
Q Consensus 43 ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~ 122 (201)
.+.+|+..-+-.-...-+.++...-+.|-+.-+-.|+++.-++|-|..=|--++..+=++|+-..+.+|..=- .|
T Consensus 219 ~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-----~~ 293 (1266)
T KOG1525|consen 219 TIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-----SQ 293 (1266)
T ss_pred hHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-----hh
Confidence 6677777776554446667888888899999999999999999999999999999999999999988887655 33
Q ss_pred hccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhh
Q 028959 123 RWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (201)
Q Consensus 123 i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~ 172 (201)
+. +...++|..+.. .+....+.||+-|+++.=-+.+-
T Consensus 294 l~-----~~~~~~~~~fl~--------r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 294 LS-----ETYDDLWSAFLG--------RFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred hc-----ccchHHHHHHHH--------HhccCChhhhhhHHHHhHHHHhc
Confidence 33 345688887654 55668889999999987666543
No 103
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.95 E-value=4.1e+02 Score=28.48 Aligned_cols=106 Identities=20% Similarity=0.299 Sum_probs=71.9
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhc------cCcchhHHHHHHHHHH-------HHhhchhh
Q 028959 13 LAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ------SSPESLVRKSLIETIE-------DIGLKAME 79 (201)
Q Consensus 13 Ln~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~------~d~~~~VRk~v~~fie-------e~c~~~~e 79 (201)
+++-....|.+.=.+.|...-|++. .+|.++..++..+++|. .+-+..+|...++||= .-||+++.
T Consensus 211 l~~~i~~~d~~~a~~~l~~l~El~e-~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~ 289 (1075)
T KOG2171|consen 211 LQEVIQDGDDDAAKSALEALIELLE-SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL 289 (1075)
T ss_pred hHhhhhccchHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh
Confidence 3333344554344677888888884 49999999999999765 2344558887777664 25778888
Q ss_pred hhhhHHHHHHHhhcc------------------C-ChhHHHHHHhh------hhhhhHHHHHHHh
Q 028959 80 HSSILMPVLLAFLRD------------------G-DSGVAGKSIVC------GTNFFCRVLEEIT 119 (201)
Q Consensus 80 l~~~~v~~L~~LL~D------------------~-~~~VvK~aI~~------~t~lyr~~L~~~~ 119 (201)
+...++++++.++.| + +.....++|-- +-.+++..++.++
T Consensus 290 ~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~ 354 (1075)
T KOG2171|consen 290 LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALE 354 (1075)
T ss_pred hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHH
Confidence 999999999888652 1 23445555542 3567888886664
No 104
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=45.03 E-value=2.4e+02 Score=28.71 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhcc
Q 028959 58 PESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (201)
Q Consensus 58 ~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D 94 (201)
++...+|..+.|+-.++...+.++..+...+...|++
T Consensus 41 ~~~~~~~atVPFlLqla~~S~~LL~~it~~~v~~l~~ 77 (696)
T PF14838_consen 41 GDKQQKKATVPFLLQLASMSPTLLKAITNDLVDILKP 77 (696)
T ss_pred CChhhhhhhhHHHHHHHhhcHHHHHHHHHHHHHHcCH
Confidence 4445777777777777777776666666666666643
No 105
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.63 E-value=2e+02 Score=30.96 Aligned_cols=95 Identities=26% Similarity=0.268 Sum_probs=65.1
Q ss_pred HHHHHHhhcCCChHHHHHH-HHHHHHhhccC----CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhh-----
Q 028959 10 LSLLAAANNHGDLAVKLSS-LKQVRGILSSA----DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME----- 79 (201)
Q Consensus 10 ~~lLn~A~~~~d~~~Kl~~-L~q~~elll~~----dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~e----- 79 (201)
+..|.+. ..+|..-.... |-++..++.+- |-..+..+++.+--+....+.++++.-++||--.|.+.|+
T Consensus 787 l~~Isag-l~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~ 865 (1176)
T KOG1248|consen 787 LSIISAG-LVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP 865 (1176)
T ss_pred HHHHHhh-hcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 4444444 33443333333 55566666542 3446666666666777999999999999999999998864
Q ss_pred hhhhHHHHHHHhhccCChhHHHHHHh
Q 028959 80 HSSILMPVLLAFLRDGDSGVAGKSIV 105 (201)
Q Consensus 80 l~~~~v~~L~~LL~D~~~~VvK~aI~ 105 (201)
+.+.++|++..++.|-.-.|.+++=+
T Consensus 866 ~~~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 866 HLEELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45668999999998887777666533
No 106
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=44.36 E-value=1.8e+02 Score=26.94 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHhhccC-CCc-hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhH--HHHHHHhhccC
Q 028959 21 DLAVKLSSLKQVRGILSSA-DPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL--MPVLLAFLRDG 95 (201)
Q Consensus 21 d~~~Kl~~L~q~~elll~~-dp~-ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~--v~~L~~LL~D~ 95 (201)
...||.+.|+=+|.++-.+ +|. +-......++....+++-..|.-.++.+.|+|..+|+++.++ +.+|...+-|.
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDG 159 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhc
Confidence 3459999999999998653 565 557888999999988888999999999999999998876443 44555555554
No 107
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=44.14 E-value=23 Score=33.65 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhcc
Q 028959 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (201)
Q Consensus 40 dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D 94 (201)
=|+|.++-++-=+.+..|.+.-||++-+.=+-..|+- +.++++.++|..||+.
T Consensus 55 fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLnk 107 (460)
T KOG2213|consen 55 FPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLNK 107 (460)
T ss_pred CchhhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHHH
Confidence 4667777777777888899999999999888888888 8899999999999983
No 108
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=43.15 E-value=1.6e+02 Score=23.11 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHhHHHHHHHhccCCCCchhHHHHHhhhHhhh
Q 028959 140 VRFKDAVFAIALEPGLVGTKLLALKFLETHVL 171 (201)
Q Consensus 140 ~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL 171 (201)
...|..|+. ++.++|+-||=.|++-+|++++
T Consensus 85 lg~K~~vM~-Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 85 LGAKERVME-LMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HSHHHHHHH-HTS-SSHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence 468999999 7799999999999999999864
No 109
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=42.29 E-value=2.2e+02 Score=30.33 Aligned_cols=112 Identities=18% Similarity=0.137 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHhhcC--CChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhc----cCcchhHHHHHHHHHHHHhhch-
Q 028959 5 SRDQALSLLAAANNH--GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ----SSPESLVRKSLIETIEDIGLKA- 77 (201)
Q Consensus 5 ~~~~v~~lLn~A~~~--~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~----~d~~~~VRk~v~~fiee~c~~~- 77 (201)
--.++..-+.+|... .+.+.|++.|--.-+.+ .+--++++||=..++.++ ..+...|||--+.-|+-....-
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~l-sr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVL-SRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH-HhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 344566666666654 44458999999777777 457789999998888765 4566779988776666444432
Q ss_pred hhhhhhHHHHHHHhhc-cCChhHHHHHHhhhhhhhHHHHHH
Q 028959 78 MEHSSILMPVLLAFLR-DGDSGVAGKSIVCGTNFFCRVLEE 117 (201)
Q Consensus 78 ~el~~~~v~~L~~LL~-D~~~~VvK~aI~~~t~lyr~~L~~ 117 (201)
.++...++..|..=|. ...+.-++--|||-+.+-|.+=.+
T Consensus 207 ~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r 247 (1233)
T KOG1824|consen 207 RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHR 247 (1233)
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcch
Confidence 3444555555554444 456888999999999998876533
No 110
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=42.17 E-value=68 Score=24.04 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=44.4
Q ss_pred hhccCCCchHHhhhHHHhhhccCcchh---HHHHHHHHHHHHhh-ch---------------hhhhhhHHHHHHHhhccC
Q 028959 35 ILSSADPSLAAELFPYLVELQSSPESL---VRKSLIETIEDIGL-KA---------------MEHSSILMPVLLAFLRDG 95 (201)
Q Consensus 35 lll~~dp~ll~~fl~~il~f~~d~~~~---VRk~v~~fiee~c~-~~---------------~el~~~~v~~L~~LL~D~ 95 (201)
+..+.-|+--++|++++++........ +-+.+..+.||+.. .+ .+..+.+++.+..+|...
T Consensus 15 i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~ 94 (148)
T PF08389_consen 15 IAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQS 94 (148)
T ss_dssp HHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333434777888888888766442221 34444566667763 11 233556666666666643
Q ss_pred C----hhHHHHHHhhhhhhhH
Q 028959 96 D----SGVAGKSIVCGTNFFC 112 (201)
Q Consensus 96 ~----~~VvK~aI~~~t~lyr 112 (201)
. +.+++.++.|..+..+
T Consensus 95 ~~~~~~~~~~~~L~~l~s~i~ 115 (148)
T PF08389_consen 95 SSEANEELVKAALKCLKSWIS 115 (148)
T ss_dssp CHCCHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHH
Confidence 2 6667777776655443
No 111
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=40.05 E-value=5.5e+02 Score=28.30 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=63.7
Q ss_pred HHHHHHHhhccC--CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh------------------------------
Q 028959 28 SLKQVRGILSSA--DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL------------------------------ 75 (201)
Q Consensus 28 ~L~q~~elll~~--dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~------------------------------ 75 (201)
+..++++.|-.+ ||+-+.+.-+++|.+-..-+++=-..+.+=|.|...
T Consensus 1476 Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~ 1555 (1758)
T KOG0994|consen 1476 LIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERAR 1555 (1758)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 445666666554 566777777788766644444444444444444333
Q ss_pred chhhhhhhHHHHHHHhhc--cCChhHHHHHHhhhhhhhHHHHHHH--------hhhhhccCcchhhHHHHHHHHHHhHHH
Q 028959 76 KAMEHSSILMPVLLAFLR--DGDSGVAGKSIVCGTNFFCRVLEEI--------TMQFRWHGKVERWLEELWTWMVRFKDA 145 (201)
Q Consensus 76 ~~~el~~~~v~~L~~LL~--D~~~~VvK~aI~~~t~lyr~~L~~~--------~~q~i~~~~~~~~~~~~W~~m~~lK~~ 145 (201)
+..+.+...+..+..-|+ |..-.-++.||+-+-.-.+.+=+.+ +......+ -+..+++.|..|.++|..
T Consensus 1556 ~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~-a~q~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1556 SRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATS-ATQQLGELETRMEELKHK 1634 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 122333333333444444 2233446666665444333332222 11111111 245788999999999999
Q ss_pred HHH
Q 028959 146 VFA 148 (201)
Q Consensus 146 Il~ 148 (201)
+.+
T Consensus 1635 ~~q 1637 (1758)
T KOG0994|consen 1635 AAQ 1637 (1758)
T ss_pred HHh
Confidence 988
No 112
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=39.94 E-value=1.4e+02 Score=26.61 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHhhccCCCchHHh----hhHHHhhhccCc--chhHHHHHHHHHHHHhhchhh-hhhhHHHHHHHhhcc
Q 028959 22 LAVKLSSLKQVRGILSSADPSLAAE----LFPYLVELQSSP--ESLVRKSLIETIEDIGLKAME-HSSILMPVLLAFLRD 94 (201)
Q Consensus 22 ~~~Kl~~L~q~~elll~~dp~ll~~----fl~~il~f~~d~--~~~VRk~v~~fiee~c~~~~e-l~~~~v~~L~~LL~D 94 (201)
.++.+-.++.+..++.+-+....++ +..-++-+...+ +..||+...+-+.+++..+++ +...++.-+...|.+
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLSKSLISGLWKWLSS 255 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 3356666776666665544334333 566667666666 899999999999999999988 788888888888864
No 113
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.83 E-value=4.9e+02 Score=28.30 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=61.0
Q ss_pred CCchHHhhhHHHhhhc-cCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHH
Q 028959 40 DPSLAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (201)
Q Consensus 40 dp~ll~~fl~~il~f~-~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L 115 (201)
.++++-+++.++-.-- .+.+...-|-+..|+-|..-.-|.++.+-+..|..+|+.++-..=..+++.++++-...+
T Consensus 268 ~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l 344 (1251)
T KOG0414|consen 268 SVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASEL 344 (1251)
T ss_pred cHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 3678888888887433 447888999999999999999999999988888888877766655666778888877777
No 114
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=39.29 E-value=73 Score=30.46 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=39.4
Q ss_pred hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh---chhhhhhhHHHHHHHhhccCC-hhHHHH
Q 028959 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGL---KAMEHSSILMPVLLAFLRDGD-SGVAGK 102 (201)
Q Consensus 43 ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~---~~~el~~~~v~~L~~LL~D~~-~~VvK~ 102 (201)
+|+.||+.+|.-..+++..||+-|++++--+=+ ..++.-.-+- .|.....+++ ...||.
T Consensus 20 ~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~-~Ll~q~~~~~~s~~vrn 82 (501)
T PF13001_consen 20 VLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVE-ALLKQYKEPSDSSFVRN 82 (501)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHH-HHHHHHhCCCCchHHHH
Confidence 568999999988888899999999999986544 2244444443 3444444444 444443
No 115
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.68 E-value=1.9e+02 Score=29.61 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=54.3
Q ss_pred chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch----hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 42 ~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~----~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
.+++-++|.+++|-..+++.+|.--++=+-..---. .-.+-+-+.+|..|-+|++|.|-|++-.+..-|.-
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 478889999999999999999987776554433322 24466677888889999999999998887766543
No 116
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.63 E-value=98 Score=31.84 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhcC-CCh--HHHHHHHHHHHHhhcc------------CCCchHHhhhHHHhhhc----cC--cchhHHHH
Q 028959 7 DQALSLLAAANNH-GDL--AVKLSSLKQVRGILSS------------ADPSLAAELFPYLVELQ----SS--PESLVRKS 65 (201)
Q Consensus 7 ~~v~~lLn~A~~~-~d~--~~Kl~~L~q~~elll~------------~dp~ll~~fl~~il~f~----~d--~~~~VRk~ 65 (201)
+-++.+|++|++. +|. .+..+....+||-+++ .++.++--|++.|+.|. .| -+-.+-+-
T Consensus 722 ~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~ 801 (859)
T KOG1241|consen 722 EMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAA 801 (859)
T ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHH
Confidence 3578899999854 222 4789999999998762 25667777888888775 22 22346777
Q ss_pred HHHHHHHHhhchhhhhh
Q 028959 66 LIETIEDIGLKAMEHSS 82 (201)
Q Consensus 66 v~~fiee~c~~~~el~~ 82 (201)
.+|+|+..|-..+....
T Consensus 802 a~GlIgDL~~~fg~~~~ 818 (859)
T KOG1241|consen 802 ALGLIGDLATMFGKGVI 818 (859)
T ss_pred HHHHHHHHHHHcccchh
Confidence 88888888877665433
No 117
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.37 E-value=68 Score=33.44 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=71.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHH-HHHHhhccCCCchHHhhhHHHhh-----hccCcchhHHHHHHHHHH-HHhhchhhh
Q 028959 8 QALSLLAAANNHGDLAVKLSSLK-QVRGILSSADPSLAAELFPYLVE-----LQSSPESLVRKSLIETIE-DIGLKAMEH 80 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~-q~~elll~~dp~ll~~fl~~il~-----f~~d~~~~VRk~v~~fie-e~c~~~~el 80 (201)
|+++-+|+---. .-.+-+.|+ .+||-++..+|.|++.|...|++ +....++.||.-+..-|. =+|-.+.++
T Consensus 514 ri~~q~~~~~~t--~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~sel 591 (1051)
T KOG0168|consen 514 RIIEQINEDTGT--SRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSEL 591 (1051)
T ss_pred hhhhhhccCccc--chhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHH
Confidence 555545544322 224556777 88999999999999999888774 237788999988777666 566677787
Q ss_pred hhhHHH------HHHHhhccCChhHHHHHHhhhhhh
Q 028959 81 SSILMP------VLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 81 ~~~~v~------~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
+..++. .|..+|.-.|+.|+=-|.|-+--|
T Consensus 592 i~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiL 627 (1051)
T KOG0168|consen 592 IGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEIL 627 (1051)
T ss_pred HHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHH
Confidence 776654 567778888888887777765544
No 118
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=37.76 E-value=84 Score=31.04 Aligned_cols=51 Identities=31% Similarity=0.379 Sum_probs=22.7
Q ss_pred HhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-hhhhhhHHHHHHHhhccC
Q 028959 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEHSSILMPVLLAFLRDG 95 (201)
Q Consensus 45 ~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-~el~~~~v~~L~~LL~D~ 95 (201)
++.+|.+.+.-.|..++|||..++-+-..|..- ...+.+.+|+|..-+.|+
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADP 345 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCc
Confidence 333333334445555555555555555444421 222444444444444444
No 119
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.61 E-value=1.3e+02 Score=31.55 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-----chHHhhhHHHhhhc-cCcchhHHHHHHHHHHHHhhc
Q 028959 3 AVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP-----SLAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLK 76 (201)
Q Consensus 3 ~s~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp-----~ll~~fl~~il~f~-~d~~~~VRk~v~~fiee~c~~ 76 (201)
.+++.|+-.||..-..++|-..+++.|.++=|+|.--+- -..+.|+|-++.+. +..+ .+.+--||+-
T Consensus 163 ~sasSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-------~DIMl~AcRa 235 (1051)
T KOG0168|consen 163 SSASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-------FDIMLLACRA 235 (1051)
T ss_pred ccchHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-------HHHHHHHHHH
Confidence 355668888999888888888999999999998874321 15677778777665 4444 3445555554
Q ss_pred h
Q 028959 77 A 77 (201)
Q Consensus 77 ~ 77 (201)
-
T Consensus 236 l 236 (1051)
T KOG0168|consen 236 L 236 (1051)
T ss_pred H
Confidence 3
No 120
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=36.87 E-value=1.7e+02 Score=26.97 Aligned_cols=87 Identities=13% Similarity=0.191 Sum_probs=54.5
Q ss_pred hccCcchhHHHHHHHHHHHHhhchh-hh-hhhHHHHHHHhhccCCh---hHHHHHHhhhhhhhHHHHHHHhhhhhccCcc
Q 028959 54 LQSSPESLVRKSLIETIEDIGLKAM-EH-SSILMPVLLAFLRDGDS---GVAGKSIVCGTNFFCRVLEEITMQFRWHGKV 128 (201)
Q Consensus 54 f~~d~~~~VRk~v~~fiee~c~~~~-el-~~~~v~~L~~LL~D~~~---~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~ 128 (201)
|.+.++.++-.-+++++...|.-.- |. ..+++.. .-.+|... .+.|-+.++ +.+|..+. +....+++
T Consensus 152 ~~~~ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~d--~~~k~~~~~~~~lAklA~qv-~~~Y~~a~-----~~~~~~~~ 223 (350)
T cd09244 152 FSNAPSMDLSPEMLEALIKLMLAQAQECVFEKLVLP--GEDSKDIQACLDLAQEAAQV-SDCYSEVH-----KLMNQEPV 223 (350)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccchhHHHHHHHHHHHH-HHHHHHHH-----HHHhcccc
Confidence 5567777777788888887777542 21 1122100 00111111 167778888 89999999 44443444
Q ss_pred hhhHHHHHHHHHHhHHHHHH
Q 028959 129 ERWLEELWTWMVRFKDAVFA 148 (201)
Q Consensus 129 ~~~~~~~W~~m~~lK~~Il~ 148 (201)
.......|..+..+|...+.
T Consensus 224 ~~~i~~~W~~~v~~K~~~f~ 243 (350)
T cd09244 224 KDYIPYSWISLVEVKSEHYK 243 (350)
T ss_pred ccccCHHHHHHHHHHHHHHH
Confidence 44567899999999999885
No 121
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.00 E-value=5.6e+02 Score=27.23 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHH--HHHHHhhch-----
Q 028959 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIE--TIEDIGLKA----- 77 (201)
Q Consensus 5 ~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~--fiee~c~~~----- 77 (201)
-|+.+++.+-.. ++. .+..+=.-+..++-+.-|+-.|+++|.+-.+-...++. .|..+ .+++.||++
T Consensus 90 irenIl~~iv~~---p~~-iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~--~vy~aLl~l~qL~k~ye~k~~ 163 (1010)
T KOG1991|consen 90 IRENILETIVQV---PEL-IRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDAN--HVYGALLCLYQLFKTYEWKKD 163 (1010)
T ss_pred HHHHHHHHHHhC---chH-HHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchh--hHHHHHHHHHHHHHHHhhccc
Confidence 456666666554 222 44444444556666777999999999999876554432 33344 345888855
Q ss_pred ----------hhhhhhHHHHHHHhhccCChhHHHH
Q 028959 78 ----------MEHSSILMPVLLAFLRDGDSGVAGK 102 (201)
Q Consensus 78 ----------~el~~~~v~~L~~LL~D~~~~VvK~ 102 (201)
.++.|.+..-...||.+++-..++-
T Consensus 164 eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el 198 (1010)
T KOG1991|consen 164 EERQPLGEAVEELFPDILQIFNGLLSQESYQSVEL 198 (1010)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 3667777777778888776555443
No 122
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.61 E-value=5.2e+02 Score=26.78 Aligned_cols=136 Identities=18% Similarity=0.163 Sum_probs=92.1
Q ss_pred HHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccC----------------
Q 028959 32 VRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG---------------- 95 (201)
Q Consensus 32 ~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~---------------- 95 (201)
+..+.+ +-|.-+---||.+.+=-.|+++-|--..++-|.|.++|+|+-...+-|.+..||-+.
T Consensus 168 lykvFL-kYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aL 246 (877)
T KOG1059|consen 168 LYKVFL-KYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAAL 246 (877)
T ss_pred HHHHHH-hhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhc
Confidence 444443 377767677899999889999999999999999999999887777777777777643
Q ss_pred ---ChhHHHHHHhhhhhhhHHHHH----HHhhhhhccCcchh--------------------------------------
Q 028959 96 ---DSGVAGKSIVCGTNFFCRVLE----EITMQFRWHGKVER-------------------------------------- 130 (201)
Q Consensus 96 ---~~~VvK~aI~~~t~lyr~~L~----~~~~q~i~~~~~~~-------------------------------------- 130 (201)
.|-..|+.|---|++.+.+-. +=|..-++.+..+.
T Consensus 247 tplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI 326 (877)
T KOG1059|consen 247 TPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKI 326 (877)
T ss_pred cccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHH
Confidence 255566666555555443321 11223222221000
Q ss_pred hHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhh
Q 028959 131 WLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (201)
Q Consensus 131 ~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vI 170 (201)
..... ..+.+.|+=|++ .++...+.||+-|+-.+...|
T Consensus 327 ~ktHp-~~Vqa~kdlIlr-cL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 327 LKTHP-KAVQAHKDLILR-CLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred hhhCH-HHHHHhHHHHHH-HhccCCchhHHHHHHHHHHHh
Confidence 00111 245678999999 779999999999999888776
No 123
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=34.98 E-value=5.1e+02 Score=26.47 Aligned_cols=143 Identities=15% Similarity=0.074 Sum_probs=87.5
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc-hHHhhhHHHhhhccCc--chhHHHHHHHHHHHHhhchhhh
Q 028959 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS-LAAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKAMEH 80 (201)
Q Consensus 4 s~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~-ll~~fl~~il~f~~d~--~~~VRk~v~~fiee~c~~~~el 80 (201)
++-+.+....|.++... +---.+++.++++.-...=+ -....+..||+.--.+ ...|-+|++.|++=---++|+-
T Consensus 8 ~~~~s~~~if~k~Q~s~--aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg 85 (885)
T COG5218 8 SSLESMQLIFNKIQQSS--AGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEG 85 (885)
T ss_pred HHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhh
Confidence 45567788888888762 24556788888888432211 3344455666665333 3347889999999666677887
Q ss_pred hhhHHHHHHHhhcc---CChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCc
Q 028959 81 SSILMPVLLAFLRD---GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG 157 (201)
Q Consensus 81 ~~~~v~~L~~LL~D---~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~G 157 (201)
.--+=+++.++|+. .+..|=||+.|-.+-+--.+ +++ ++.. .+.++..+.. .+-.-...
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v-----------~eI---De~l---~N~L~ekl~~-R~~DRE~~ 147 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVV-----------REI---DEVL---ANGLLEKLSE-RLFDREKA 147 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc-----------chH---HHHH---HHHHHHHHHH-HHhcchHH
Confidence 77777888888883 47888888876543322211 112 2222 3455556655 33334456
Q ss_pred hhHHHHHhh
Q 028959 158 TKLLALKFL 166 (201)
Q Consensus 158 Vr~~aiKF~ 166 (201)
||..|+|-+
T Consensus 148 VR~eAv~~L 156 (885)
T COG5218 148 VRREAVKVL 156 (885)
T ss_pred HHHHHHHHH
Confidence 777777644
No 124
>PF04793 Herpes_BBRF1: BRRF1-like protein; InterPro: IPR006878 Most proteins in this entry are uncharacterised viral proteins translated from gene 49. The UL6 locus of pseudorabies virus (PRV) has a gene cluster with homology to herpes simplex virus UL5, UL6, UL7 and UL8, Epstein-Barr virus BBRF1 and BBRF2, and Kaposi sarcoma-associated herpes virus ORF43 and ORF42 [].
Probab=34.97 E-value=1.4e+02 Score=26.90 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhcC---CC------hHHHHHHHHHHHHhhc-cC--CCchHHhhhHHHh---hhc-cCcchhHHHHHHHH
Q 028959 6 RDQALSLLAAANNH---GD------LAVKLSSLKQVRGILS-SA--DPSLAAELFPYLV---ELQ-SSPESLVRKSLIET 69 (201)
Q Consensus 6 ~~~v~~lLn~A~~~---~d------~~~Kl~~L~q~~elll-~~--dp~ll~~fl~~il---~f~-~d~~~~VRk~v~~f 69 (201)
-++|+..+|..... ++ .-+|...|.++-..+. |+ +|..+|...+.|+ ... .-.....|+++-+.
T Consensus 6 ~~~vv~el~~i~~~~~~~~~~~p~~~leR~~fL~kv~q~L~qhr~~E~~Ivp~i~~ni~y~L~~L~~~~~~~~~~~i~~~ 85 (284)
T PF04793_consen 6 IGQVVHELNTISVSTRVPRSSHPLLALERGLFLLKVCQVLMQHRQSEPFIVPKIRSNIIYFLEELKELSPGDCQEAIKEI 85 (284)
T ss_pred HHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 46778888877753 11 1356676766666655 44 6778888777766 333 33557789999999
Q ss_pred HHHH-hhchhhhhhhHHHHHHHhhccCChhHHH
Q 028959 70 IEDI-GLKAMEHSSILMPVLLAFLRDGDSGVAG 101 (201)
Q Consensus 70 iee~-c~~~~el~~~~v~~L~~LL~D~~~~VvK 101 (201)
+.++ -+.+..+...+...+..+|..+.|..+.
T Consensus 86 L~~l~~~~d~~L~~~L~~~l~~ll~~~yP~~~~ 118 (284)
T PF04793_consen 86 LDHLEEAGDSNLERELAKGLPKLLGCKYPHILN 118 (284)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHhhhCCCcCC
Confidence 9986 6777777777777777777655444433
No 125
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=34.92 E-value=2.9e+02 Score=25.08 Aligned_cols=99 Identities=14% Similarity=0.209 Sum_probs=64.9
Q ss_pred CcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhcc-CChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHH
Q 028959 57 SPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEEL 135 (201)
Q Consensus 57 d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D-~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~ 135 (201)
+++.++-.-+++++...|.-.-+-+-- ...+.| ..++++-|.-.-...+|..++..+ ..+. .....
T Consensus 157 ~~s~Dl~~~~l~~L~~lmLAQAQE~~~-----~Kai~~~~k~sliAKLa~qv~~~Y~~a~~~l-----~~~~---~i~~~ 223 (355)
T cd09241 157 SPPPDLDENTLKALESLMLAQAQECFW-----QKAISDGTKDSLIAKLAAQVSDYYQEALKYA-----NKSD---LIRSD 223 (355)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHhcCCcchHHHHHHHHHHHHHHHHHHHH-----hcCC---cccHH
Confidence 477888888888888888865332211 111222 235555555555589999999433 3332 35689
Q ss_pred HHHHHHhHHHHHHHhc----------cCCCCchhHHHHHhhhHh
Q 028959 136 WTWMVRFKDAVFAIAL----------EPGLVGTKLLALKFLETH 169 (201)
Q Consensus 136 W~~m~~lK~~Il~~~~----------~s~n~GVr~~aiKF~E~v 169 (201)
|..+..+|...+. .. +.+..|..+..++.....
T Consensus 224 W~~~v~~K~~~f~-A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~ 266 (355)
T cd09241 224 WINHLKVKKHHFK-AAAHYRMALVALEKSKYGEEVARLRVALAA 266 (355)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999876 44 346788888888776653
No 126
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.60 E-value=3.6e+02 Score=25.29 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=41.5
Q ss_pred hHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 48 FPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 48 l~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
++.++.+-.|.++.||...+.-+++++.. + .++.|...+.|+|+.|=.-||-+...+
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~~--~----a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPRR--L----SESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccc--c----chHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 34555666699999999999999988753 2 334466778999998877777665433
No 127
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=34.38 E-value=74 Score=20.07 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=25.9
Q ss_pred HHHhhchhhhhh--hHHHHHHHhhccCChhHHHHHHh
Q 028959 71 EDIGLKAMEHSS--ILMPVLLAFLRDGDSGVAGKSIV 105 (201)
Q Consensus 71 ee~c~~~~el~~--~~v~~L~~LL~D~~~~VvK~aI~ 105 (201)
.++..++|+++. .+...+..-|.|++|+|=+-|++
T Consensus 4 ~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 4 SSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHH
Confidence 345556666654 88888888999999888766664
No 128
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=34.34 E-value=1.5e+02 Score=22.30 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhchhhhhhhHHHHHHHhhccC-ChhHHHHHHhhhhhhhHHHH
Q 028959 63 RKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG-DSGVAGKSIVCGTNFFCRVL 115 (201)
Q Consensus 63 Rk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~-~~~VvK~aI~~~t~lyr~~L 115 (201)
|..++.....+.. +||--...+..|..+.++. +..|.|-|+.+...+|+-++
T Consensus 5 K~~IA~l~~~ile-~PE~ni~~lk~l~~~~~~~~~~~v~kLa~lSl~~VFkDIi 57 (95)
T PF07540_consen 5 KEEIASLASSILE-DPEENIGSLKRLLKLCESKVDVTVRKLAILSLLAVFKDII 57 (95)
T ss_pred HHHHHHHHHHHHH-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcC
Confidence 3344444444443 5666666788888888888 99999999999999998877
No 129
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=33.61 E-value=3.7e+02 Score=24.38 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=67.0
Q ss_pred ccCcchhHHHHHHHHHHHHhhchhhhh--hhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhH
Q 028959 55 QSSPESLVRKSLIETIEDIGLKAMEHS--SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWL 132 (201)
Q Consensus 55 ~~d~~~~VRk~v~~fiee~c~~~~el~--~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~ 132 (201)
...+++++-.-++.++...|.-.-+-+ .+++ .....++++=+.-.-...+|..++..+ .+.......
T Consensus 170 ~~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai------~~~~k~~liAKLa~qv~~~Y~~a~~~l-----~~~~~~~~~ 238 (346)
T cd09240 170 QQEPTPDLSPDTLSALSALMLAQAQEVFYLKAT------RDKMKDAIIAKLAAQAADYYGDAFKQC-----QREDVRSLL 238 (346)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------hccCchhHHHHHHHHHHHHHHHHHHHH-----hcchhcccc
Confidence 456777777788888888888664332 2222 122345565555566678999999444 332222235
Q ss_pred HHHHHHHHHhHHHHHHHhc----------cCCCCchhHHHHHhhhH
Q 028959 133 EELWTWMVRFKDAVFAIAL----------EPGLVGTKLLALKFLET 168 (201)
Q Consensus 133 ~~~W~~m~~lK~~Il~~~~----------~s~n~GVr~~aiKF~E~ 168 (201)
...|..+..+|...+. .. +.+.-|..+..+|..+.
T Consensus 239 ~~~W~~~~~~K~~~f~-a~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 239 PKDWIPVLAGKQAYFH-ALAEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 6789999999988776 43 35678888888877765
No 130
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=33.51 E-value=1.2e+02 Score=30.30 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=38.6
Q ss_pred HHHHHHhhccCCCchH-HhhhHHHhhhccCcchhHHHHHHHHHHHHhhc
Q 028959 29 LKQVRGILSSADPSLA-AELFPYLVELQSSPESLVRKSLIETIEDIGLK 76 (201)
Q Consensus 29 L~q~~elll~~dp~ll-~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~ 76 (201)
...+-+.+..+.+-.+ ++++|+++-|-.|+++++|+|....++.....
T Consensus 102 F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~ 150 (727)
T PF12726_consen 102 FDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRP 150 (727)
T ss_pred HHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCC
Confidence 4455566656555544 99999999999999999999999999987764
No 131
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=33.47 E-value=1.3e+02 Score=22.79 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=30.3
Q ss_pred HHhhhHHHhhhccCcc-hhHHHHHHHHHHHHhhch---hhhhhhHHHH
Q 028959 44 AAELFPYLVELQSSPE-SLVRKSLIETIEDIGLKA---MEHSSILMPV 87 (201)
Q Consensus 44 l~~fl~~il~f~~d~~-~~VRk~v~~fiee~c~~~---~el~~~~v~~ 87 (201)
+-+||..+++|..|.+ +++-.-|-+.|...+-.. .|+..++-..
T Consensus 5 ~k~FL~tLi~ls~~~~qpe~~~~Vr~LV~~L~~~~i~~EeF~~~Lq~~ 52 (92)
T smart00549 5 CKRFLTTLIQLSNDISQPEVAERVRTLVLGLVNGTITAEEFTSRLQEA 52 (92)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4689999999998888 777777777777666533 3444444333
No 132
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=33.26 E-value=69 Score=20.26 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhH
Q 028959 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFP 49 (201)
Q Consensus 7 ~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~ 49 (201)
+..+++|+.=+...- .+-+...++.+|+ +.+|.|+.+|-.
T Consensus 5 ~~FL~il~~y~~~~~--~~~~v~~~v~~Ll-~~hpdLl~~F~~ 44 (47)
T PF02671_consen 5 NEFLKILNDYKKGRI--SRSEVIEEVSELL-RGHPDLLEEFNR 44 (47)
T ss_dssp HHHHHHHHHHHCTCS--CHHHHHHHHHHHT-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHH-ccCHHHHHHHHh
Confidence 455667777666422 3556777788766 668888888753
No 133
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.21 E-value=3.3e+02 Score=25.27 Aligned_cols=94 Identities=15% Similarity=0.153 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHHHHhhccCCCc--hH-HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhH-----HHHHHH
Q 028959 19 HGDLAVKLSSLKQVRGILSSADPS--LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL-----MPVLLA 90 (201)
Q Consensus 19 ~~d~~~Kl~~L~q~~elll~~dp~--ll-~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~-----v~~L~~ 90 (201)
+.|.++|...|-.+++++-+-|=+ +. -.++..++-+-.+.++.||..-+..|+.+....|.....+ +..|..
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 478889999999999999543322 33 3456677778889999999999999999988775433333 234444
Q ss_pred hhccC-ChhHHHHHHhhhhhhhH
Q 028959 91 FLRDG-DSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 91 LL~D~-~~~VvK~aI~~~t~lyr 112 (201)
.|.-+ +-.|-.+|.=+.+++.|
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIR 196 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIR 196 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHh
Confidence 44433 33343555555555544
No 134
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=33.19 E-value=42 Score=19.00 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhchhhhhhhHHHHHHHhhcc
Q 028959 62 VRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (201)
Q Consensus 62 VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D 94 (201)
||...+.-|++++- +..++.|...|+|
T Consensus 1 VR~~Aa~aLg~igd------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------HHHHHHHHHHhcC
Confidence 56666666666665 5566666666654
No 135
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=33.17 E-value=1.2e+02 Score=24.35 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=36.4
Q ss_pred hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccC-ChhHHHHHH
Q 028959 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG-DSGVAGKSI 104 (201)
Q Consensus 43 ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~-~~~VvK~aI 104 (201)
+|.+|+|. .-...+++.+|.+.|++.+...+.-..+++..+..-+... |-..|.+.+
T Consensus 82 iL~~yLP~-----~lseeEi~~~v~~~i~e~ga~~~k~mG~vMk~l~~~~~G~~Dgk~vs~~V 139 (143)
T PF09424_consen 82 ILEEYLPK-----QLSEEEIEAIVEEAIAELGASSMKDMGKVMKALMAKLKGRADGKKVSQLV 139 (143)
T ss_dssp HHGGGS----------HHHHHHHHHHHHHHTT--BGGGHHHHHHHHHHHHTTTS-HHHHHHHH
T ss_pred HHHHhCcC-----CCCHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCcccHHHHHHHH
Confidence 45555553 3345679999999999999988888899999888766633 444444433
No 136
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=32.92 E-value=96 Score=30.65 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=43.0
Q ss_pred ccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchh-hHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhh
Q 028959 93 RDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVER-WLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVL 171 (201)
Q Consensus 93 ~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~-~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL 171 (201)
++.+|.|+-+.|.|.++|...+= +++ .+.-..+-.+.+|..|-+ ....||+.++-.+|++|=
T Consensus 117 ~e~~~~~~tq~~kcla~lv~~~p------------~~~l~~~~~~~~~~~ik~~i~~-----~d~~v~vs~l~~~~~~v~ 179 (728)
T KOG4535|consen 117 AESSSQTVTQIIKCLANLVSNAP------------YDRLKLSLLTKVWNQIKPYIRH-----KDVNVRVSSLTLLGAIVS 179 (728)
T ss_pred HhcCchhHHHHHHHHHHHHhcCc------------hHHHHHHHHHHHHHHHHHHhhc-----CCCChhhHHHHHHHHHHh
Confidence 46689999999999998865432 222 233333444456655544 788999999999999873
No 137
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=32.27 E-value=1.9e+02 Score=23.03 Aligned_cols=66 Identities=23% Similarity=0.191 Sum_probs=37.8
Q ss_pred hhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCc
Q 028959 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG 157 (201)
Q Consensus 81 ~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~G 157 (201)
...+-..+..||.+.++.|.|.|+.|.-+-=...+ .++-+..+..=+- ..||+.+..+..+++...
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l----------~pY~d~L~~Lldd-~~frdeL~~f~~~~~~~~ 80 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKDPYL----------TPYKDNLENLLDD-KTFRDELTTFNLSDESSV 80 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHH----------HhHHHHHHHHcCc-chHHHHHHhhcccCCcCC
Confidence 34455667788889999999999988765311111 0111111111111 378888888666655444
No 138
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=32.11 E-value=2.1e+02 Score=27.95 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHhhcc
Q 028959 22 LAVKLSSLKQVRGILSS 38 (201)
Q Consensus 22 ~~~Kl~~L~q~~elll~ 38 (201)
=-.|+++++||.++++.
T Consensus 295 fLAKLHCvRqAf~~~l~ 311 (514)
T PF10265_consen 295 FLAKLHCVRQAFQVLLQ 311 (514)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34799999999998875
No 139
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.06 E-value=1.8e+02 Score=30.36 Aligned_cols=75 Identities=25% Similarity=0.328 Sum_probs=57.9
Q ss_pred HhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhh
Q 028959 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFR 123 (201)
Q Consensus 45 ~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i 123 (201)
+.+-..|+.+-......+.+++-+-|--+++.| |+==|.++|-|..-|...|-.+++.+..++-+||+ +|.
T Consensus 87 e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFk--------r~R 158 (960)
T KOG1992|consen 87 EQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFK--------RYR 158 (960)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHH--------hcC
Confidence 345566667777777889999999999999877 55555566666666678889999999999999998 776
Q ss_pred ccCc
Q 028959 124 WHGK 127 (201)
Q Consensus 124 ~~~~ 127 (201)
..-+
T Consensus 159 ~efr 162 (960)
T KOG1992|consen 159 PEFR 162 (960)
T ss_pred cccc
Confidence 6554
No 140
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=30.93 E-value=2.3e+02 Score=21.28 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=41.4
Q ss_pred HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhh
Q 028959 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVC 106 (201)
Q Consensus 45 ~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~ 106 (201)
...+.+++....++...+..++-........++.-.+-|.+-.|..||++.+|.++..+...
T Consensus 18 ~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~~~w~v~~K~LillH~llr~G~~~~~~~~~~~ 79 (117)
T cd03564 18 DKHVRKIIAGTSSSPASIPSFASALSRRLLDRNWVVVLKALILLHRLLREGHPSFLQELLSR 79 (117)
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 34444555444443344444444444455556677888999999999999999998887765
No 141
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=30.76 E-value=2.4e+02 Score=21.40 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhc---CCChHHHHHHHHHHHHhhc
Q 028959 7 DQALSLLAAANN---HGDLAVKLSSLKQVRGILS 37 (201)
Q Consensus 7 ~~v~~lLn~A~~---~~d~~~Kl~~L~q~~elll 37 (201)
|.++.-++.|.. .+|.+.+..+|.++++++.
T Consensus 27 d~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~ 60 (122)
T PF02561_consen 27 DGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIIT 60 (122)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 445555666654 4888899999999999884
No 142
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.64 E-value=1.3e+02 Score=29.75 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHH
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPV 87 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~ 87 (201)
++..|+.++-.++....--..++.++.++-+.|.. +.+-...+++.-.-..++||+.....++|.+-+.+.+=..++.+
T Consensus 7 kl~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee-~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~lii~n 85 (661)
T KOG2374|consen 7 KLIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEE-VRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLIIEN 85 (661)
T ss_pred HHHHHHHHHhhcCCcccChHHHHHHHHHHhccHHH-HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence 45666666665543323345667777777666655 67777888888888889999999999999999999888888888
Q ss_pred HHHhhc
Q 028959 88 LLAFLR 93 (201)
Q Consensus 88 L~~LL~ 93 (201)
+..+|+
T Consensus 86 ~~efLe 91 (661)
T KOG2374|consen 86 LDEFLE 91 (661)
T ss_pred HHHHHH
Confidence 888877
No 143
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=30.38 E-value=44 Score=33.56 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=21.2
Q ss_pred HHHHHhhccCChhHHHHHHhhhhhhhHH
Q 028959 86 PVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 86 ~~L~~LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
+.|+.+|+ ++|-..||||.+|-+|=..
T Consensus 499 ~gLL~~l~-~~prL~kQAIvTCPNlPl~ 525 (670)
T PF10395_consen 499 KGLLELLR-NNPRLFKQAIVTCPNLPLD 525 (670)
T ss_pred hhHHHHhh-cChhHHHHHhccCCCCcHH
Confidence 45556666 7899999999999998543
No 144
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=30.13 E-value=6.1e+02 Score=25.92 Aligned_cols=103 Identities=19% Similarity=0.121 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCc---hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh--c--hh
Q 028959 7 DQALSLLAAANNH-GDLAVKLSSLKQVRGILSSADPS---LAAELFPYLVELQSSPESLVRKSLIETIEDIGL--K--AM 78 (201)
Q Consensus 7 ~~v~~lLn~A~~~-~d~~~Kl~~L~q~~elll~~dp~---ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~--~--~~ 78 (201)
.|++..+=.-+.. +..+.-+..|+.--+-...+||. +.+.|+-.++-+...++..||+-+...|.-+.- + |.
T Consensus 48 lr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe 127 (885)
T COG5218 48 LRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE 127 (885)
T ss_pred HHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH
Confidence 3455544444443 33334567777777766677886 889999999999999999999999888874433 2 35
Q ss_pred hhhhhHHHHHHHhhccCChhHHHHHHhhhhh
Q 028959 79 EHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (201)
Q Consensus 79 el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~ 109 (201)
.+..-++..|+.=+-|..++|=+.|+.|.+-
T Consensus 128 ~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~ 158 (885)
T COG5218 128 VLANGLLEKLSERLFDREKAVRREAVKVLCY 158 (885)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 6666667777777778889998888887654
No 145
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=30.00 E-value=1.1e+02 Score=33.23 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhc--cCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh--chhhhhhhHHHHHHHhhccCChhH
Q 028959 24 VKLSSLKQVRGILS--SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--KAMEHSSILMPVLLAFLRDGDSGV 99 (201)
Q Consensus 24 ~Kl~~L~q~~elll--~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~--~~~el~~~~v~~L~~LL~D~~~~V 99 (201)
.|-.+|..+-+|.. .|.-+ =|-+|.-++.|-.|.+-.+|....+=|--+|- .--..-..++|-|..=|.|..++|
T Consensus 594 Vkr~Lle~i~~LC~FFGk~ks-ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~V 672 (1431)
T KOG1240|consen 594 VKRALLESIIPLCVFFGKEKS-NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAV 672 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhccc-ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhh
Confidence 55555555444443 11111 14456777788899999999655444442222 222344556777888889999999
Q ss_pred HHHHHhhhhhhhHHHH
Q 028959 100 AGKSIVCGTNFFCRVL 115 (201)
Q Consensus 100 vK~aI~~~t~lyr~~L 115 (201)
+-+|+.|.+.|++.-|
T Consensus 673 iv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 673 IVSALGSLSILIKLGL 688 (1431)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998655
No 146
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.76 E-value=2.6e+02 Score=28.88 Aligned_cols=136 Identities=17% Similarity=0.195 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchh--hhhhhH
Q 028959 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM--EHSSIL 84 (201)
Q Consensus 7 ~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~--el~~~~ 84 (201)
.+.++||.+-+= .+.++-.| .-++|++.+..+.+.....+-.=..++++---+.-..+|+-+|.++. .+...
T Consensus 77 mEaV~LLss~ky---sEKqIGYl--~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~D- 150 (938)
T KOG1077|consen 77 MEAVNLLSSNKY---SEKQIGYL--FISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADD- 150 (938)
T ss_pred HHHHHHhhcCCc---cHHHHhHH--HHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhh-
Confidence 455666654432 22456665 35677777766777777776643344555556667778887777662 22222
Q ss_pred HHHHHHhhc--cCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHH
Q 028959 85 MPVLLAFLR--DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLA 162 (201)
Q Consensus 85 v~~L~~LL~--D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~a 162 (201)
+-.||. +.-+.|-|+|-+|.-.|||..= +-....-|. ++|++ +++...-||-+.+
T Consensus 151 ---I~KlLvS~~~~~~vkqkaALclL~L~r~sp-------------Dl~~~~~W~------~riv~-LL~D~~~gv~ta~ 207 (938)
T KOG1077|consen 151 ---IPKLLVSGSSMDYVKQKAALCLLRLFRKSP-------------DLVNPGEWA------QRIVH-LLDDQHMGVVTAA 207 (938)
T ss_pred ---hHHHHhCCcchHHHHHHHHHHHHHHHhcCc-------------cccChhhHH------HHHHH-HhCccccceeeeh
Confidence 223444 3457777888999999988511 112234454 68999 7777779999999
Q ss_pred HHhhhHhhh
Q 028959 163 LKFLETHVL 171 (201)
Q Consensus 163 iKF~E~vIL 171 (201)
.-|+|.++-
T Consensus 208 ~sLi~~lvk 216 (938)
T KOG1077|consen 208 TSLIEALVK 216 (938)
T ss_pred HHHHHHHHH
Confidence 999998863
No 147
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=29.33 E-value=2.4e+02 Score=20.96 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHhhch-hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhc----cCcchhhHHHH
Q 028959 61 LVRKSLIETIEDIGLKA-MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRW----HGKVERWLEEL 135 (201)
Q Consensus 61 ~VRk~v~~fiee~c~~~-~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~----~~~~~~~~~~~ 135 (201)
-||+.++.-+.++++++ |+.=+..++.+..++..+ +.-. ..+-.+.+..-+++.. +.. ..+..+-.+..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~-~~~~----~~~L~iL~~l~eEi~~-~~~~~~~~~r~~~l~~~l 76 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS-PQHL----ELVLRILRILPEEITD-FRRSSLSQERRRELKDAL 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT-HHHH----HHHHHHHHHHHHHHHT-SHCCHSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc-hhHH----HHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHHHH
Confidence 48899999999999988 788888888888888774 3332 2333344444444431 111 01111122333
Q ss_pred HHHHHHhHHHHHHHhcc-CC--C-CchhHHHHHhhhHhhh
Q 028959 136 WTWMVRFKDAVFAIALE-PG--L-VGTKLLALKFLETHVL 171 (201)
Q Consensus 136 W~~m~~lK~~Il~~~~~-s~--n-~GVr~~aiKF~E~vIL 171 (201)
-+.+..+=+-..+ .++ +. + +.+...++|.+..+|-
T Consensus 77 ~~~~~~i~~~l~~-~l~~~~~~~~~~~~~~~L~~l~s~i~ 115 (148)
T PF08389_consen 77 RSNSPDILEILSQ-ILSQSSSEANEELVKAALKCLKSWIS 115 (148)
T ss_dssp HHHHHHHHHHHHH-HHHHHCHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-HHHhhccccHHHHHHHHHHHHHHHHH
Confidence 3333333333333 222 22 2 6778888888888764
No 148
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=29.08 E-value=1e+02 Score=21.93 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=33.4
Q ss_pred hhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHH
Q 028959 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (201)
Q Consensus 77 ~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L 115 (201)
+|.++-.++.++..+...+ +.-+.+.|...+.+||..+
T Consensus 10 nPHFl~NtLn~I~~l~~~~-~~~~~~~i~~ls~~lRy~l 47 (82)
T PF06580_consen 10 NPHFLFNTLNSISWLARID-PEKASEMILSLSDLLRYSL 47 (82)
T ss_pred ChHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHh
Confidence 4778888888898888888 8899999999999999888
No 149
>PRK13342 recombination factor protein RarA; Reviewed
Probab=28.98 E-value=3e+02 Score=25.33 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=37.5
Q ss_pred HHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHh
Q 028959 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF 91 (201)
Q Consensus 27 ~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~L 91 (201)
+.+....+.+-+.||.-.-.++..+++--.|+..-.|+.++--.|+++..+|+-+..++......
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Confidence 33444444444445544444555555555566666777777777777777776666666555433
No 150
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=28.83 E-value=1.2e+02 Score=21.01 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=37.0
Q ss_pred cCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 56 ~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
.||..+-|+...++|++-+..+.+-+-.++.+.+.|= ++..=+-.+.+++.+
T Consensus 2 ~DP~~DFr~SM~EMI~~~~i~~~~~LeeLL~cYL~LN---~~~~H~~Iv~aF~dv 53 (59)
T PF04844_consen 2 SDPYEDFRESMVEMIEENGIRDWDDLEELLACYLSLN---SPEHHKFIVEAFVDV 53 (59)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---ChhhhhHHHHHHHHH
Confidence 5788899999999999999999888888877766553 333333334444443
No 151
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.42 E-value=7.3e+02 Score=26.23 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCC---CchHHhhhHHHhhhc-cCcchhHHHHHHHHHHHHhhch-hh---
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSAD---PSLAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKA-ME--- 79 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~d---p~ll~~fl~~il~f~-~d~~~~VRk~v~~fiee~c~~~-~e--- 79 (201)
+++.+.=.--..+|..=|.++++-+.+++.--+ .+.+-+.+..|+.+. .|+++.|||.-+..|.+.-..- ..
T Consensus 847 ~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 847 VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHH
Confidence 333333333335666668999999888886433 346666777777544 9999999999999998766533 12
Q ss_pred ----hhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHH
Q 028959 80 ----HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (201)
Q Consensus 80 ----l~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L 115 (201)
++....-++..+.++++.-++|--.+-+.--.-.++
T Consensus 927 ilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 927 ILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 333555667777777776666665555544444444
No 152
>PF09418 DUF2009: Protein of unknown function (DUF2009); InterPro: IPR018553 This is a eukaryotic family of proteins with unknown function.
Probab=28.24 E-value=1e+02 Score=29.65 Aligned_cols=64 Identities=17% Similarity=0.390 Sum_probs=42.5
Q ss_pred HHHHHHHhhchhhhhhhHHHHHHHhhccC--ChhHHHHHHhhhhhhhHHHHHHHhhhhhc------cCc-chhhHHHHHH
Q 028959 67 IETIEDIGLKAMEHSSILMPVLLAFLRDG--DSGVAGKSIVCGTNFFCRVLEEITMQFRW------HGK-VERWLEELWT 137 (201)
Q Consensus 67 ~~fiee~c~~~~el~~~~v~~L~~LL~D~--~~~VvK~aI~~~t~lyr~~L~~~~~q~i~------~~~-~~~~~~~~W~ 137 (201)
++-|++.++++| .|..+++.. .+.-+|+.|++ ..||.+| -|-. .|. ++.-++++|+
T Consensus 370 l~~i~~l~~~~~--------~l~~yi~~~~g~~~~l~~~IL~--DfFrh~F-----DGSGaDNf~daGSCIDGRLTSAWN 434 (458)
T PF09418_consen 370 LDKIPELAKKDP--------HLRNYIESEFGSVEELKKTILQ--DFFRHAF-----DGSGADNFFDAGSCIDGRLTSAWN 434 (458)
T ss_pred HHHHHHHHhcCH--------HHHHHHHHhcCCHHHHHHHHHH--HHHHhcC-----CCCCcccCCCCCCccccchhHHHH
Confidence 445666666664 455556654 56668888875 6788877 5543 233 6677899999
Q ss_pred HHHHhHHH
Q 028959 138 WMVRFKDA 145 (201)
Q Consensus 138 ~m~~lK~~ 145 (201)
|.++|-.+
T Consensus 435 wc~~i~kK 442 (458)
T PF09418_consen 435 WCSQIEKK 442 (458)
T ss_pred Hhhhcccc
Confidence 99998543
No 153
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=28.15 E-value=1.2e+02 Score=23.82 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=19.9
Q ss_pred HHHHHhhccCChhHHHHHHhhhhhh
Q 028959 86 PVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 86 ~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
..+..|+.++|+.|-+.|++|..-+
T Consensus 89 ~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 89 ERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4667788999999999999987654
No 154
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=27.11 E-value=3.3e+02 Score=21.75 Aligned_cols=90 Identities=12% Similarity=0.051 Sum_probs=53.6
Q ss_pred HHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhcc--CChhHHHHHHhh--hhhhhHHHHHHHh
Q 028959 44 AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD--GDSGVAGKSIVC--GTNFFCRVLEEIT 119 (201)
Q Consensus 44 l~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D--~~~~VvK~aI~~--~t~lyr~~L~~~~ 119 (201)
+|..+..+.....|++..+++ |.++..+||.+..+++...+.-.-. ....=+++||.- ...+++.++....
T Consensus 4 lp~~~~~l~~~l~~~~~~~~~-----l~~~i~~Dp~L~~~lL~~aNs~~~~~~~~i~sl~~Ai~~LG~~~i~~l~~~~~~ 78 (196)
T PF08668_consen 4 LPEVARRLLSLLNDPEASIDE-----LAELIESDPALAARLLRLANSAYFGLRRPISSLEQAISRLGLDRIRNLALALSL 78 (196)
T ss_dssp EHHHHHHHHHHHHSTTS-HHH-----HHHHHHTSHHHHHHHHHHHHSTTTTSTST--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCHHH-----HHHHHHHCHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHhCHHHHHHHHHHHHH
Confidence 355666667666677766665 6678888999999988888765443 233346666653 3355666665554
Q ss_pred hhhhccCc-chhhHHHHHHH
Q 028959 120 MQFRWHGK-VERWLEELWTW 138 (201)
Q Consensus 120 ~q~i~~~~-~~~~~~~~W~~ 138 (201)
.+...... .....+..|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~ 98 (196)
T PF08668_consen 79 RSLFPSSPPYQFNLERFWRH 98 (196)
T ss_dssp HHHSCTTSCTTSCHHHHHHH
T ss_pred HHHccccchhhhhHHHHHHH
Confidence 33333333 33456777764
No 155
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=26.89 E-value=1.7e+02 Score=25.43 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=47.7
Q ss_pred HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 45 ~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
++..+.++++..|....||+..+.-++.++... ..+.+.+...+.|++..|-++++.+-..+
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 445555667777888899999999998888766 56667888888999999988877765544
No 156
>smart00323 RasGAP GTPase-activator protein for Ras-like GTPases. All alpha-helical domain that accelerates the GTPase activity of Ras, thereby "switching" it into an "off" position. Improved domain limits from structure.
Probab=26.68 E-value=4.4e+02 Score=23.60 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhhcc
Q 028959 130 RWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (201)
Q Consensus 130 ~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~qT 174 (201)
...+..|+.+..+-+.|.+ .++.-|.|+|-.|-.+.+.+---+.
T Consensus 147 ~n~~~L~~~~~~~~~~I~~-s~~~~P~~lr~i~~~l~~~~~~kfp 190 (344)
T smart00323 147 TNLENLLQYVERLFDAIIN-SSDRLPYGLRDICKQLRQAAEKRFP 190 (344)
T ss_pred HHHHHHHHHHHHHHHHHHH-hHHhCcHHHHHHHHHHHHHHHHHCC
Confidence 3457789999999999999 8899999999999988888765543
No 157
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=26.46 E-value=1.2e+02 Score=23.15 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=24.3
Q ss_pred HHhhhHHHhhhccC-cchhHHHHHHHHHHHHhh
Q 028959 44 AAELFPYLVELQSS-PESLVRKSLIETIEDIGL 75 (201)
Q Consensus 44 l~~fl~~il~f~~d-~~~~VRk~v~~fiee~c~ 75 (201)
+.+||..++.|..+ .++++..-|-++|....-
T Consensus 6 ck~FL~tLi~las~~~spev~~~Vr~LV~~L~~ 38 (96)
T PF07531_consen 6 CKNFLNTLIQLASDKQSPEVGENVRELVQNLVD 38 (96)
T ss_dssp HHHHHHHHHHHHCCSC-CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHc
Confidence 46899999999988 888877777777765544
No 158
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.43 E-value=3.7e+02 Score=26.36 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=60.6
Q ss_pred HHHHHHH----HHhhccCCCc----hHHhhhHHHhhhccCcchhHH---HHHHHHHHHHhhchh--hhhhhHHHHHHHhh
Q 028959 26 LSSLKQV----RGILSSADPS----LAAELFPYLVELQSSPESLVR---KSLIETIEDIGLKAM--EHSSILMPVLLAFL 92 (201)
Q Consensus 26 l~~L~q~----~elll~~dp~----ll~~fl~~il~f~~d~~~~VR---k~v~~fiee~c~~~~--el~~~~v~~L~~LL 92 (201)
+..++++ ..+.-+++|+ -....||-+.-+.++.+.+|. +|.+.++-.-.--.. -+-..++|.|..+|
T Consensus 209 ~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL 288 (514)
T KOG0166|consen 209 LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL 288 (514)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH
Confidence 5555554 4556677776 457788888899999999999 888888865444333 33456788888999
Q ss_pred ccCChhHHHHHHhhhhh
Q 028959 93 RDGDSGVAGKSIVCGTN 109 (201)
Q Consensus 93 ~D~~~~VvK~aI~~~t~ 109 (201)
....+.|+=-++.+.+|
T Consensus 289 ~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 289 GHSSPKVVTPALRAIGN 305 (514)
T ss_pred cCCCcccccHHHhhccc
Confidence 98887777666666655
No 159
>PF13475 DUF4116: Domain of unknown function (DUF4116)
Probab=26.00 E-value=1.4e+02 Score=18.38 Aligned_cols=40 Identities=13% Similarity=-0.089 Sum_probs=23.0
Q ss_pred HHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 68 ETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 68 ~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
+|+.++.++++..+..+-..|. .|.-+++.||......|.
T Consensus 3 e~v~~~v~~~~~~l~~~~~~lk-----~D~e~vl~av~~~~~~l~ 42 (49)
T PF13475_consen 3 EFVLEAVKKNGYALQYASEELK-----NDKEFVLKAVKQNGSALK 42 (49)
T ss_pred HHHHHHHHhCCHHHHHhCHHHh-----CCHHHHHHHHHhChHHHh
Confidence 4666777776654433322222 267788888876665444
No 160
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.88 E-value=5.6e+02 Score=27.25 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=64.6
Q ss_pred chhHHHHHHHHHHHHhhch-hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHH
Q 028959 59 ESLVRKSLIETIEDIGLKA-MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWT 137 (201)
Q Consensus 59 ~~~VRk~v~~fiee~c~~~-~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~ 137 (201)
..-+|-+...-+.-+-+.| |+.-+.+++....+|..++.+.+=.+..|.-.|++. - +|...+.-++-.+..=+
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~-y-----e~k~~eeR~~l~~~v~~ 175 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKT-Y-----EWKKDEERQPLGEAVEE 175 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHH-H-----hhccccccccHHHHHHH
Confidence 4446666666666665555 889999999999999999999999999988887763 2 45554443444555566
Q ss_pred HHHHhHHHHHHHhccCCCCc
Q 028959 138 WMVRFKDAVFAIALEPGLVG 157 (201)
Q Consensus 138 ~m~~lK~~Il~~~~~s~n~G 157 (201)
.+..+.+.+.+ ++..+|.+
T Consensus 176 ~fP~il~~~~~-ll~~~s~~ 194 (1010)
T KOG1991|consen 176 LFPDILQIFNG-LLSQESYQ 194 (1010)
T ss_pred HHHHHHHHHHh-hccccchH
Confidence 67777777777 44444443
No 161
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=25.83 E-value=3.5e+02 Score=21.68 Aligned_cols=44 Identities=18% Similarity=0.075 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHH
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPY 50 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~ 50 (201)
+++....+.......-.++.-+.+-..|+.+.. +|..++.|+..
T Consensus 4 ~~~l~~i~~~~p~~~l~~~ek~llw~~R~~~~~-~p~~lp~~L~s 47 (152)
T cd00864 4 RKPLLAILLYPPFSTLTEEEKELLWKFRYYLLN-VPKALPKLLKS 47 (152)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhh-ChHHHHHHHHH
Confidence 445555555444443334666677777777654 56655555543
No 162
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=25.62 E-value=3.3e+02 Score=21.31 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=39.2
Q ss_pred CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHH
Q 028959 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (201)
Q Consensus 40 dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~ 114 (201)
.++-++...+++..+-.+ ..+.++.++++|-+.....|..+ .+...|...+....+.+.+..|..+-.-|+..
T Consensus 12 s~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~-~~ya~L~~~l~~~~~~f~~~ll~~~~~~f~~~ 84 (200)
T smart00543 12 SPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFI-PAYARLCALLNAKNPDFGSLLLERLQEEFEKG 84 (200)
T ss_pred CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666655433 24577777777776666665443 23334444444444555555555555555443
No 163
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=25.47 E-value=5.2e+02 Score=23.51 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=66.6
Q ss_pred cCcchhHHHHHHHHHHHHhhchhhhh--hhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHH
Q 028959 56 SSPESLVRKSLIETIEDIGLKAMEHS--SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLE 133 (201)
Q Consensus 56 ~d~~~~VRk~v~~fiee~c~~~~el~--~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~ 133 (201)
..++.++-.-+++++...|.-.-+-+ .+++ .....++++=+.-.-.+.+|..+...+ .+++..+...
T Consensus 163 ~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~------~~~~k~sliAKLa~qv~~~Y~~a~~~l-----~~~~~~~~~~ 231 (353)
T cd09246 163 GFRTPDLTAECLGMLESLMLAQAQECFYEKAV------ADGKSPAVCSKLAKQARSYYEEALEAL-----DSPPLKGHFD 231 (353)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCccHHHHHHHHHHHHHHHHHHHH-----hccccccccc
Confidence 34566777777888888777553322 2221 112344555455556678999999433 3333444567
Q ss_pred HHHHHHHHhHHHHHHHhc----------cCCCCchhHHHHHhhhHh
Q 028959 134 ELWTWMVRFKDAVFAIAL----------EPGLVGTKLLALKFLETH 169 (201)
Q Consensus 134 ~~W~~m~~lK~~Il~~~~----------~s~n~GVr~~aiKF~E~v 169 (201)
..|..+..+|...+. .. +.+.-|..+..++..+..
T Consensus 232 ~~W~~~~~~K~~~f~-A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 276 (353)
T cd09246 232 KSWVAHVQLKAAYFR-AEALYRAAKDLHEKEDIGEEIARLRAASDA 276 (353)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhHHhcchHHHHHHHHHHHHH
Confidence 899999999999887 43 457789988888877663
No 164
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=25.35 E-value=77 Score=25.60 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=29.9
Q ss_pred HHhhhHHHhhhc-cCcchhHHHHHHHHHHHHhhchhh
Q 028959 44 AAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAME 79 (201)
Q Consensus 44 l~~fl~~il~f~-~d~~~~VRk~v~~fiee~c~~~~e 79 (201)
+|++++-++.+- .+.+..+|+-++..|+-+|+=||.
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~ 44 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPY 44 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcH
Confidence 577888888765 778899999999999999996654
No 165
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.22 E-value=3.3e+02 Score=27.89 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=49.0
Q ss_pred cCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHH
Q 028959 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 56 ~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
.|.-.+||+--++=+....-+.|.+..+++.-|-.+++|+...|=-++|-+.+-|-..
T Consensus 383 EDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 383 EDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3555679999888888888888999999999999999999888888899888776543
No 166
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=25.20 E-value=97 Score=29.84 Aligned_cols=55 Identities=27% Similarity=0.289 Sum_probs=40.3
Q ss_pred CCchHHhhhHHHhh----hccC--cchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhcc
Q 028959 40 DPSLAAELFPYLVE----LQSS--PESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (201)
Q Consensus 40 dp~ll~~fl~~il~----f~~d--~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D 94 (201)
|.+++...++-+++ +=++ =+.+|||-+.+++-.+|++||.++...-.-|..++..
T Consensus 256 d~sLi~~L~pvlleRs~~Lfp~~~y~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~ 316 (459)
T PF14764_consen 256 DGSLICQLLPVLLERSDALFPIPQYQAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGS 316 (459)
T ss_pred CHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcc
Confidence 44455555555553 2233 3467999999999999999999998888888888773
No 167
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.10 E-value=3.2e+02 Score=26.76 Aligned_cols=114 Identities=18% Similarity=0.073 Sum_probs=79.8
Q ss_pred HhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-hhhhhh-----HHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHH
Q 028959 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEHSSI-----LMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEI 118 (201)
Q Consensus 45 ~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-~el~~~-----~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~ 118 (201)
.+++|.++.+-...+-.+||-.+=-|.-+|..- ++.+.. +++.+-.||.=.|+.+++.+.-+..+|.+..=
T Consensus 363 a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e--- 439 (514)
T KOG0166|consen 363 ANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE--- 439 (514)
T ss_pred cccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH---
Confidence 588999999888888999998777777666532 222222 56778888876678888888888888887665
Q ss_pred hhhhhcc--CcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHh
Q 028959 119 TMQFRWH--GKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (201)
Q Consensus 119 ~~q~i~~--~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~v 169 (201)
++--. +++....|++ .-.+.|-. +.+++|++|---|.|-+|+.
T Consensus 440 --~~~~~~~n~~~~~IEe~-----ggldkiE~-LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 440 --AEKNRGTNPLAIMIEEA-----GGLDKIEN-LQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred --HhccccccHHHHHHHHc-----cChhHHHH-hhccccHHHHHHHHHHHHHh
Confidence 22221 2222222222 44566766 77899999999999999988
No 168
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=24.85 E-value=2.6e+02 Score=27.80 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=67.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhh-hHHHhhhc-cCcchhHHHHHHHHHHHHhhchhhhhhhHH
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAEL-FPYLVELQ-SSPESLVRKSLIETIEDIGLKAMEHSSILM 85 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~f-l~~il~f~-~d~~~~VRk~v~~fiee~c~~~~el~~~~v 85 (201)
.++.++.+-+.++ ..+.+.=+-+.+.+...+-....+. +.-|+.++ ....++.-+.+++.||-.+|-..+.+.++|
T Consensus 184 ~Llrmf~aPn~et--~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv 261 (832)
T KOG3678|consen 184 LLLRMFQAPNLET--SVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV 261 (832)
T ss_pred HHHHHHhCCchhH--HHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444444444333 2466666666666665555554444 33445666 556778999999999999998777776665
Q ss_pred H-----HHHHhhccCChhHHHHHHhhhhhhh
Q 028959 86 P-----VLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 86 ~-----~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
. .+++-.+-.+|++++.+-++.+|+-
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~ 292 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCA 292 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhh
Confidence 4 4555566778999999888877753
No 169
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=24.78 E-value=74 Score=23.54 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHHhhccCCCchHHh
Q 028959 21 DLAVKLSSLKQVRGILSSADPSLAAE 46 (201)
Q Consensus 21 d~~~Kl~~L~q~~elll~~dp~ll~~ 46 (201)
|..+|.++|..+|+++..+|-.-.|.
T Consensus 50 nt~~K~sLLsEiR~lI~p~Dl~RFD~ 75 (81)
T cd07357 50 NTHEKFSLLSEIRELISPQDLDRFDD 75 (81)
T ss_pred ccHHHHHHHHHHHHhcChhhhhHHHH
Confidence 45589999999999996666544443
No 170
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=24.38 E-value=89 Score=19.63 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhchhhhhhhHH
Q 028959 63 RKSLIETIEDIGLKAMEHSSILM 85 (201)
Q Consensus 63 Rk~v~~fiee~c~~~~el~~~~v 85 (201)
+.++.+.|..+|.+||++...++
T Consensus 12 ~~qL~~lL~~l~~~HPei~~~i~ 34 (38)
T PF14483_consen 12 KDQLQSLLQSLCERHPEIQQEIR 34 (38)
T ss_dssp HHHHHHHHHHHHHHSTHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhHHHHHH
Confidence 56777889999999998876664
No 171
>PF09790 Hyccin: Hyccin; InterPro: IPR018619 Members of this family of proteins may have a role in the beta-catenin-Tcf/Lef signaling pathway, as well as in the process of myelination of the central and peripheral nervous system. Defects in Hyccin are the cause of hypomyelination with congenital cataracts [MIM:610532]. This disorder is characterised by congenital cataracts, progressive neurologic impairment, and diffuse myelin deficiency. Affected individuals experience progressive pyramidal and cerebellar dysfunction, muscle weakness and wasting prevailing in the lower limbs [, ].
Probab=24.26 E-value=1.2e+02 Score=27.47 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=36.1
Q ss_pred HHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHH
Q 028959 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDI 73 (201)
Q Consensus 27 ~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~ 73 (201)
+....+...+.+.+.++++....-+.+|-...+.++|+|+..|+=+.
T Consensus 17 ~l~~ai~~~l~~~~~~~~~~vC~qLy~~Y~s~~~~L~~f~LqFlP~L 63 (309)
T PF09790_consen 17 ELVSAIYSVLNESGSELLDPVCHQLYEFYRSGEPELRRFVLQFLPAL 63 (309)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 33455666665567778899999999988888899999999887543
No 172
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=23.77 E-value=3.9e+02 Score=24.59 Aligned_cols=79 Identities=32% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhc----cCcchhHHHHHHHHHHHHhhch----hhhhhh
Q 028959 12 LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ----SSPESLVRKSLIETIEDIGLKA----MEHSSI 83 (201)
Q Consensus 12 lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~----~d~~~~VRk~v~~fiee~c~~~----~el~~~ 83 (201)
+++.++.+++. .|-.+|..+-.++-+--.+.+-.-+++++++- .-++.++|....+-+..+.... .+|+..
T Consensus 328 L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~s 406 (415)
T PF12460_consen 328 LLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSS 406 (415)
T ss_pred HHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Q ss_pred HHHHHHHh
Q 028959 84 LMPVLLAF 91 (201)
Q Consensus 84 ~v~~L~~L 91 (201)
+||.|..+
T Consensus 407 LI~~LL~l 414 (415)
T PF12460_consen 407 LIPRLLKL 414 (415)
T ss_pred HHHHHHhc
No 173
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.75 E-value=1.9e+02 Score=29.90 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=38.3
Q ss_pred hHHHhhhc-cCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhH
Q 028959 48 FPYLVELQ-SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGV 99 (201)
Q Consensus 48 l~~il~f~-~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~V 99 (201)
+..+|.+. +|.+-+|||.-+-=|+=+|-+||+.++.+|.-|. +.-||.|
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLs---es~N~HV 605 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLS---ESYNPHV 605 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHh---hhcChhh
Confidence 34456664 7999999999999999999999999988876544 3447877
No 174
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=23.13 E-value=7.7e+02 Score=25.22 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=40.1
Q ss_pred CchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHH
Q 028959 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSI 104 (201)
Q Consensus 41 p~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI 104 (201)
|.+++.-+..+-.|-..+.+..|=.-...|-+++-++|+.+..|=+.+-.|..|+|-.+.-=||
T Consensus 298 ~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAI 361 (898)
T COG5240 298 SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAI 361 (898)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHH
Confidence 3444444444445556666666666666677777777777777777777777777665544443
No 175
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=22.96 E-value=7.8e+02 Score=26.11 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=47.9
Q ss_pred hhccCcchhHHHHHHHHHHHHhhch-hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHH
Q 028959 53 ELQSSPESLVRKSLIETIEDIGLKA-MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (201)
Q Consensus 53 ~f~~d~~~~VRk~v~~fiee~c~~~-~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L 115 (201)
....|.+.-+|+-++.=|-.+..-| |+--|.++|.+..+|.+.|..=+-.|..+-+.+|.-+.
T Consensus 97 ~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 97 NLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred hhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 3444788888888888888888766 78888888888888887777767777777777777665
No 176
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=22.95 E-value=1.6e+02 Score=22.84 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=32.9
Q ss_pred hHHhhhHHHhhhccCc-----chhHHHHHHHHHHHHhhchhhhhhhHHHHHH
Q 028959 43 LAAELFPYLVELQSSP-----ESLVRKSLIETIEDIGLKAMEHSSILMPVLL 89 (201)
Q Consensus 43 ll~~fl~~il~f~~d~-----~~~VRk~v~~fiee~c~~~~el~~~~v~~L~ 89 (201)
+.++.+..+-.|.... ....+.|+.+.+.+++..+.+.+..++.+..
T Consensus 36 yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~~evL~sv~ 87 (125)
T PF12022_consen 36 YVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIASEVLTSVR 87 (125)
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777776433 5567788888888888888777666665533
No 177
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=22.85 E-value=4.2e+02 Score=27.62 Aligned_cols=103 Identities=16% Similarity=0.041 Sum_probs=63.4
Q ss_pred HHHhhhccCcchhHHHHHHHHHHHH---hhchhhhhh---hHHHHHHHh----hccCChhHHHHHHhhhhhhhHHHHHHH
Q 028959 49 PYLVELQSSPESLVRKSLIETIEDI---GLKAMEHSS---ILMPVLLAF----LRDGDSGVAGKSIVCGTNFFCRVLEEI 118 (201)
Q Consensus 49 ~~il~f~~d~~~~VRk~v~~fiee~---c~~~~el~~---~~v~~L~~L----L~D~~~~VvK~aI~~~t~lyr~~L~~~ 118 (201)
+-+.++-.+.+.-+|+.+++.++.+ .++++|+.. .-+..|..+ |.|.+|-+=-+|+|.+..||-.--
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s--- 378 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS--- 378 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc---
Confidence 3445666677888999999988844 346654443 334444444 448899999999998877775322
Q ss_pred hhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhh
Q 028959 119 TMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (201)
Q Consensus 119 ~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vI 170 (201)
++. ++ -. ++-.-+.+ .+..-+.-||=.|||..-++.
T Consensus 379 --k~~--~~---r~--------ev~~lv~r-~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 379 --KTV--GR---RH--------EVIRLVGR-RLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred --ccc--ch---HH--------HHHHHHHH-HhhhhhHHHHHHHHHHHHHHH
Confidence 111 11 01 22222333 334556678888999888764
No 178
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=22.54 E-value=1.5e+02 Score=16.55 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccC
Q 028959 61 LVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG 95 (201)
Q Consensus 61 ~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~ 95 (201)
-||+..+..++.++- +..++.|..+|+|+
T Consensus 2 ~vR~~aa~aLg~~~~------~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQLGD------EEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHcCC------HhHHHHHHHHhcCC
Confidence 378888888887742 44556666666653
No 179
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=22.51 E-value=1.4e+02 Score=24.39 Aligned_cols=73 Identities=14% Similarity=0.049 Sum_probs=43.6
Q ss_pred CCCchHHhhhHHHhh-hccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhcc---CChhHHHHHHhhhhhhhH
Q 028959 39 ADPSLAAELFPYLVE-LQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD---GDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 39 ~dp~ll~~fl~~il~-f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D---~~~~VvK~aI~~~t~lyr 112 (201)
.++..-+++++.+++ +....+..+-. .++.+.++|+++|-.+......|..+++. =.+.++.+-+.|.-.|++
T Consensus 48 ~h~~~r~~Ile~l~~rI~~~s~~~~~~-~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~ 124 (158)
T PF14676_consen 48 VHEMIRSEILEQLLNRIVTKSSSPSSQ-YIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIK 124 (158)
T ss_dssp H-GGGHHHHHHHHHHHHHH--SS--HH-HHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHhcCccchhH-HHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 455555667777764 33444443444 48999999999999988888888887763 356666666666555544
No 180
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.37 E-value=3.9e+02 Score=32.27 Aligned_cols=93 Identities=25% Similarity=0.323 Sum_probs=64.3
Q ss_pred CChHHHHHHHHHHHHhhccCC-C-c--hHHhhhHHHhh---------hccCcchhHHHHHHHHHHHHhhch--hhhhhhH
Q 028959 20 GDLAVKLSSLKQVRGILSSAD-P-S--LAAELFPYLVE---------LQSSPESLVRKSLIETIEDIGLKA--MEHSSIL 84 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll~~d-p-~--ll~~fl~~il~---------f~~d~~~~VRk~v~~fiee~c~~~--~el~~~~ 84 (201)
.+.++|+..+..+++.+-.-. | + ++..++|-++. ++..+..++|+.+.+.|....-++ -.+...+
T Consensus 19 ~~~~~klk~~~E~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e~~~~~~~~~ 98 (3550)
T KOG0889|consen 19 LPIESKLKMLVEIRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNEVFKPFSQEL 98 (3550)
T ss_pred CchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 444588888888888775432 2 2 24444444443 235577789999999999887776 4678888
Q ss_pred HHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 85 MPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 85 v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
+..+..+|..+|.-.+==++..-+.++|
T Consensus 99 ~~~~~~vl~~dNeen~~l~lkii~~l~r 126 (3550)
T KOG0889|consen 99 LKVLMRVLTNDNEENAILCLKIITDLFR 126 (3550)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHH
Confidence 8888888886665555556666677776
No 181
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=22.31 E-value=67 Score=24.65 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=16.5
Q ss_pred HHhhhHHHhhhc-cCcchhHHHHHHHHHH
Q 028959 44 AAELFPYLVELQ-SSPESLVRKSLIETIE 71 (201)
Q Consensus 44 l~~fl~~il~f~-~d~~~~VRk~v~~fie 71 (201)
|.+|+..|+..- ...+++++..+++|++
T Consensus 90 Le~fL~~ll~~~~l~~~~~~~~~l~~FL~ 118 (120)
T cd06873 90 LNQYLQSLLNPEVLDANPGLQEIVLDFLE 118 (120)
T ss_pred HHHHHHHHhCCHhhccCHHHHHHHHHHcC
Confidence 355666666443 2445667777777764
No 182
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=22.13 E-value=6.1e+02 Score=23.13 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHhhc-CCChHHHHHHHHHHHHhhccCCCc----hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh---c
Q 028959 5 SRDQALSLLAAANN-HGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGL---K 76 (201)
Q Consensus 5 ~~~~v~~lLn~A~~-~~d~~~Kl~~L~q~~elll~~dp~----ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~---~ 76 (201)
--+++++.+..-.. -+....-.+.|.-.+.++ .+.|. -.+.+++.++.--.+...++|-..+.+.+++++ .
T Consensus 130 ~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll-~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~ 208 (372)
T PF12231_consen 130 RVERLLAALHNIKNRFPSKSIISERLNIYKRLL-SQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGP 208 (372)
T ss_pred hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCh
Confidence 34566777776664 233334445555455555 33554 335577777766667788888888888887765 2
Q ss_pred hhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccC-cchhhHHHHHHHHHHhHHH----------
Q 028959 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHG-KVERWLEELWTWMVRFKDA---------- 145 (201)
Q Consensus 77 ~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~-~~~~~~~~~W~~m~~lK~~---------- 145 (201)
+.++...+.+.+...+.++ ...++|..-+++|.. + +.....-+.|..|..+=+.
T Consensus 209 ~~~~s~~~~~~~~~~~~~~----------~~~~~~~~~L~~mi~-----~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n 273 (372)
T PF12231_consen 209 NKELSKSVLEDLQRSLENG----------KLIQLYCERLKEMIK-----SKDEYKLAMQIWSVVILLLGSSRLDSWEHLN 273 (372)
T ss_pred hHHHHHHHHHHhccccccc----------cHHHHHHHHHHHHHh-----CcCCcchHHHHHHHHHHHhCCchhhccHhHh
Confidence 2333333333333222222 234556666644432 2 2233566777777765431
Q ss_pred ----HHHHhccCCCCchhHHHHHhhhHhhhhcc
Q 028959 146 ----VFAIALEPGLVGTKLLALKFLETHVLLFT 174 (201)
Q Consensus 146 ----Il~~~~~s~n~GVr~~aiKF~E~vIL~qT 174 (201)
|...-+.+.+..+|..|++==..+|-+..
T Consensus 274 ~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~ 306 (372)
T PF12231_consen 274 EWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASN 306 (372)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 22223356777899999998888887443
No 183
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=22.12 E-value=3.4e+02 Score=22.57 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHH--------H------------------hhhc--c
Q 028959 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPY--------L------------------VELQ--S 56 (201)
Q Consensus 5 ~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~--------i------------------l~f~--~ 56 (201)
.++++-..++-.....-..+.-++|-+-|+..+..+|..|+-|+.. + |++- .
T Consensus 7 ~~~~l~~i~~~~p~~~l~~eek~llW~~R~~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL~~~ 86 (184)
T smart00145 7 ERDRLEAILKLDPTYELTAEEKDLIWKFRHYYLTNNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELLSPK 86 (184)
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHHChHHHHhcChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCcc
Confidence 4556666665554443333566777777776665577777776611 1 1111 0
Q ss_pred CcchhHHHHHHHHHHHHhhch-hhhhhhHHHHHHH
Q 028959 57 SPESLVRKSLIETIEDIGLKA-MEHSSILMPVLLA 90 (201)
Q Consensus 57 d~~~~VRk~v~~fiee~c~~~-~el~~~~v~~L~~ 90 (201)
=++..||.+.+.-|+...-.+ .-++|.+|+.|.+
T Consensus 87 ~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~ 121 (184)
T smart00145 87 FPDPFVRAYAVERLESASDEELLLYLLQLVQALKY 121 (184)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 025667877777776644333 3455666665543
No 184
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=21.99 E-value=5.3e+02 Score=22.43 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=34.1
Q ss_pred CCchHHhhhHHHhhhccCcchh--HHHHHHHHHHHHhhc--hhhhhhhHHHHHHHhhc
Q 028959 40 DPSLAAELFPYLVELQSSPESL--VRKSLIETIEDIGLK--AMEHSSILMPVLLAFLR 93 (201)
Q Consensus 40 dp~ll~~fl~~il~f~~d~~~~--VRk~v~~fiee~c~~--~~el~~~~v~~L~~LL~ 93 (201)
+..+++.+++.+..+..++... +++.+-+++++...+ ..++...++..+..+++
T Consensus 140 ~~~l~~~il~~i~~~l~~~e~~~~I~~~i~~~~~~~~~~~~~~~l~~~i~~~l~~~l~ 197 (367)
T PF04286_consen 140 HQKLLDRILEKIKEYLKSEETRERIRDLIEEFLEEYLGKSFLDKLAEKIQDELDSLLE 197 (367)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 3446777777777777776655 777777777766544 45555666665555444
No 185
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=21.94 E-value=3.6e+02 Score=20.41 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=39.1
Q ss_pred chHHhhhHHHhhhccCcchhHHHHHHHHHH-HHhhc-hhhhhhhHHHHHHHhhccCChhHHHHHH
Q 028959 42 SLAAELFPYLVELQSSPESLVRKSLIETIE-DIGLK-AMEHSSILMPVLLAFLRDGDSGVAGKSI 104 (201)
Q Consensus 42 ~ll~~fl~~il~f~~d~~~~VRk~v~~fie-e~c~~-~~el~~~~v~~L~~LL~D~~~~VvK~aI 104 (201)
.+-+..+.+|+....+....+. ++.+.|. -+..+ +.-.+.|.+-.|.+||++.++.|+..+-
T Consensus 17 ~p~~k~~~~I~~~t~~~~~~~~-~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~~~ 80 (127)
T smart00273 17 GPKGKHLREIIQGTHNEKSSFA-EIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEAL 80 (127)
T ss_pred CcCHHHHHHHHHHHccCHhhHH-HHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3556666677766544433333 3333333 33333 4677889999999999999998875543
No 186
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=21.85 E-value=3e+02 Score=24.18 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=39.7
Q ss_pred CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhh-----------HHHHHHHhhccCChhHHHHHHhhhh
Q 028959 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI-----------LMPVLLAFLRDGDSGVAGKSIVCGT 108 (201)
Q Consensus 40 dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~-----------~v~~L~~LL~D~~~~VvK~aI~~~t 108 (201)
+...+...+=.++.-. ..+.++.+.+.-+|.+.+.-+++...- ....+..++..+|..+.-.+....|
T Consensus 52 ~~~~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt 130 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILT 130 (312)
T ss_dssp ----------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4434444444666554 678889999999999999977543322 3345555777778888888887777
Q ss_pred hhhH
Q 028959 109 NFFC 112 (201)
Q Consensus 109 ~lyr 112 (201)
.|..
T Consensus 131 ~Ll~ 134 (312)
T PF03224_consen 131 SLLS 134 (312)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6643
No 187
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=21.68 E-value=2.5e+02 Score=28.80 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=60.9
Q ss_pred cCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 38 SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 38 ~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
+|..+-+--|+-++..|+.=....+=-.+--|++..|.++.+++..++.+.-+.|+-+||.-+|.-|+-.-+...
T Consensus 421 ~K~~~Nl~~~l~ylynF~ivs~~LiydiI~kl~~~l~e~~ve~ll~ii~~~G~~LRkDDp~alk~~i~eiq~~a~ 495 (822)
T KOG2141|consen 421 DKSLNNIVLFLSYLYNFGIVSCSLIYDIIRKLAENLNETNVEALLTIIANCGFSLRKDDPLALKDIITEIQSKAA 495 (822)
T ss_pred cchhhhHHHHHHHHHHhhcccHHHHHHHHHHHHhchhhhhHHHHHHHHHHccchhcCCChHHHHHHHHHHHHHhh
Confidence 445567778888888998777777776777777888889999999999999999999999999988876655443
No 188
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=20.97 E-value=4.8e+02 Score=27.65 Aligned_cols=97 Identities=22% Similarity=0.371 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc----hHHhhhHHHhhhccCcc---hhHHHHHHHHHHHHhhchh--
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPE---SLVRKSLIETIEDIGLKAM-- 78 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~----ll~~fl~~il~f~~d~~---~~VRk~v~~fiee~c~~~~-- 78 (201)
.+.-||=+|..-+|...|++-|+..+-++.. .+. -++.++|.++.+..|++ .-||---..-++..-+.-|
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~-~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTE-SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHHh-ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc
Confidence 3466778888888888999999988888865 443 55667777777776665 5677666665555555221
Q ss_pred ---hhhhhHHHHHHHhhccCChhHHHHHHh
Q 028959 79 ---EHSSILMPVLLAFLRDGDSGVAGKSIV 105 (201)
Q Consensus 79 ---el~~~~v~~L~~LL~D~~~~VvK~aI~ 105 (201)
-+-+.|+..|.--|.|.---|=|.|+.
T Consensus 988 ~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 988 SLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred ccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 233455555555555553333333433
No 189
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.89 E-value=2.2e+02 Score=28.76 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=52.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc---------hH-HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchh
Q 028959 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPS---------LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAM 78 (201)
Q Consensus 10 ~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~---------ll-~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~ 78 (201)
+++|=++-..+|.+-+-..|++++|.+-+...+ +| |++++-+=.+-....+..++|+++.|-.+|-.+-
T Consensus 49 LellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~iydkw~~~n~K~~LaDilS~l~m~ys 127 (881)
T COG5110 49 LELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALCMVYS 127 (881)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHHHhhccCcchhhHHHHHHHHHeeecc
Confidence 567777777788888889999999999765422 22 5555544455577889999999999999998553
No 190
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.88 E-value=2.1e+02 Score=21.72 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=21.1
Q ss_pred ccCcchhHHHHHHHHHHHHhhch
Q 028959 55 QSSPESLVRKSLIETIEDIGLKA 77 (201)
Q Consensus 55 ~~d~~~~VRk~v~~fiee~c~~~ 77 (201)
-.|++++|..-.++.++|+|..+
T Consensus 17 L~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 17 LYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred hcCCCHHHHHHHHHHHHHHHhch
Confidence 37999999999999999999987
No 191
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=20.82 E-value=3.6e+02 Score=28.45 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=58.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCC--chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh----hh
Q 028959 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADP--SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS----SI 83 (201)
Q Consensus 10 ~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp--~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~----~~ 83 (201)
-..+|.+.....-..|+..++..--.. +.++ +++|.+++.++++.++.+.+|--.+.+-|--+|+-||+.. .+
T Consensus 493 ~~~v~~l~~~~~~~~ki~a~~~~~~~~-~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~sk 571 (1005)
T KOG2274|consen 493 NATVNALTMDVPPPVKISAVRAFCGYC-KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESK 571 (1005)
T ss_pred HHHHHhhccCCCCchhHHHHHHHHhcc-CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcc
Confidence 344555555533346666666333222 3332 5889999999999999999999999999999999887552 34
Q ss_pred HHHHHHHh-hc-cCChhHH
Q 028959 84 LMPVLLAF-LR-DGDSGVA 100 (201)
Q Consensus 84 ~v~~L~~L-L~-D~~~~Vv 100 (201)
+.|-...+ +. .+||.|+
T Consensus 572 I~P~~i~lF~k~s~DP~V~ 590 (1005)
T KOG2274|consen 572 ICPLTINLFLKYSEDPQVA 590 (1005)
T ss_pred hhHHHHHHHHHhcCCchHH
Confidence 44422222 22 5677543
No 192
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=20.57 E-value=3.6e+02 Score=19.96 Aligned_cols=117 Identities=22% Similarity=0.206 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHH
Q 028959 8 QALSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMP 86 (201)
Q Consensus 8 ~v~~lLn~A~~~-~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~ 86 (201)
+.++-+.++-.. .+..+|+..+-...=-.+..+|.+.--+ ..++ ...+.+.|+.+-+...+ +..++..++.
T Consensus 7 ~~~~~i~~~~~~~~~~~ekL~~~i~~~~~~~~~~~~~~~v~---~~e~-~~~~~~~~~~~~~~~~~----~~~~i~~iI~ 78 (133)
T PF08359_consen 7 RFLERIEEAIADESSPEEKLRALIEAHLDFLEENPDLAIVL---SLEL-RQSNEELRKKINEIRRE----YLRIIEEIIE 78 (133)
T ss_dssp HHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHT-HHHHHHH---HCTT-S-SSHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCCChhhhh---HHHH-hhCCHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 445555555544 7777888887766555555677653211 1132 22345666665544332 2222222221
Q ss_pred H--HHHhhc-cCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCc---chhhHHHHHHHH
Q 028959 87 V--LLAFLR-DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK---VERWLEELWTWM 139 (201)
Q Consensus 87 ~--L~~LL~-D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~---~~~~~~~~W~~m 139 (201)
- =..-++ |=||.++..+|..+.+ -.++ +|..++. ..+..+.+|+.+
T Consensus 79 eG~~~Gefr~d~d~~~~~~~i~G~i~--~~v~-----~w~~~~~~~~l~~~~~~~~~l~ 130 (133)
T PF08359_consen 79 EGQEQGEFRKDLDPELAARFIFGMIN--HTVL-----DWVLNDGKFDLEDIAEELMDLL 130 (133)
T ss_dssp HHHHTTSB-TT--HHHHHHHHHHHHH--HHHH-----HHHHTTT-S-CGGGHHHHHHHH
T ss_pred HHHHcCccCCCCCHHHHHHHHHHHHH--HHHH-----HHHhcCCCCCHHHHHHHHHHHh
Confidence 1 111122 2266666666654432 3344 7877443 445666666654
No 193
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=20.54 E-value=6.9e+02 Score=23.18 Aligned_cols=153 Identities=19% Similarity=0.165 Sum_probs=75.6
Q ss_pred CccchHHHHHHHHHHhhcC-CChHHHHHHHHHHHH--hhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch
Q 028959 1 MAAVSRDQALSLLAAANNH-GDLAVKLSSLKQVRG--ILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (201)
Q Consensus 1 ma~s~~~~v~~lLn~A~~~-~d~~~Kl~~L~q~~e--lll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~ 77 (201)
|-+.+|+.++++|-+.... ..+.+- |++..+ -+..+|..++-+++-+++.-+ . .+-..|+...++
T Consensus 1 ~~~~~R~~A~~~L~~~~~~~~~~~~~---l~~~~~~~~l~~~d~~~~~~lv~g~lr~~----~----~ld~~i~~~~~~- 68 (444)
T PRK14902 1 MKMNARELALEVLIKVENNGAYSNIA---LNKVLKKSELSDKDKALLTELVYGTIQRK----L----TLDYYLAPFIKK- 68 (444)
T ss_pred CCccHHHHHHHHHHHHHhcCCCHHHH---HHHHHHhcCCChHHHHHHHHHHHHHHHhH----H----HHHHHHHHHhhh-
Confidence 5567899999999998664 333222 222211 122234445555555555322 1 122222332222
Q ss_pred hhhhhhHHHH------HHHhhcc--CChhHHHHHHhhh--------hhhhHHHHHHHhhhhhc--------------cCc
Q 028959 78 MEHSSILMPV------LLAFLRD--GDSGVAGKSIVCG--------TNFFCRVLEEITMQFRW--------------HGK 127 (201)
Q Consensus 78 ~el~~~~v~~------L~~LL~D--~~~~VvK~aI~~~--------t~lyr~~L~~~~~q~i~--------------~~~ 127 (201)
.+-++.++-+ ...+..| +..+++-.+|..+ ..+.-.+|+.+...... ...
T Consensus 69 ~~~l~~~~r~iLrla~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~~~~~~~~~~~~~~~~~~ 148 (444)
T PRK14902 69 RKKLDPWVRNLLRMSLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLPDIDEIKDPVKRLSIKYS 148 (444)
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhccccccccccCHHHHHHHHhC
Confidence 2112222222 1112223 3445555555544 34566677766533200 012
Q ss_pred chhhHHHHHHHHHH--hHHHHHHHhccCCCCchhHHHHHh
Q 028959 128 VERWLEELWTWMVR--FKDAVFAIALEPGLVGTKLLALKF 165 (201)
Q Consensus 128 ~~~~~~~~W~~m~~--lK~~Il~~~~~s~n~GVr~~aiKF 165 (201)
.++|.-+.|...-. --.+++.-...+.+..+|+...|.
T Consensus 149 ~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~ 188 (444)
T PRK14902 149 HPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKI 188 (444)
T ss_pred ChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCCC
Confidence 35677788877652 335677733347788898887764
No 194
>cd05127 RasGAP_IQGAP_related This family represents IQ motif containing GTPase activating protein (IQGAP) which associated with the Ras GTP-binding protein. A primary function of IQGAP proteins is to modulate cytoskeletal architecture. There are three known IQGAP family members: IQGAP1, IQGAP2 and IQGAP3. Human IQGAP1 and IQGAP2 share 62% indentity. IQGAPs are multi-domain molecules having a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeats, a single WW domain, four IQ motifs that mediate interactions with calmodulin, and a RasGAP related domain that binds active Rho family GTPases. IQGAP is an essential regulator of cytoskeletal function. IQGAP1 negatively regulates Ras family GTPases by stimulating their intrinsic GTPase activity, the protein actually lacks GAP activity. Both IQGAP1 and IQGAP2 specifically bind to Cdc42 and Rac1, but not to RhoA. Despite of their similarities to part of the sequence of RasGAP, neither IQGAP1 nor IQGAP2 interacts with Ras. IQGA
Probab=20.49 E-value=3e+02 Score=24.54 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhhc
Q 028959 129 ERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLF 173 (201)
Q Consensus 129 ~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~q 173 (201)
.+....+|+....+=+.|.+ .++.-|.|+|-.|-...+.+---|
T Consensus 118 ~~nl~~L~~~~~~fl~~I~~-s~~~~P~~lR~i~~~l~~~~~~kf 161 (325)
T cd05127 118 IENLQSLRELTEQFLDAIIS-SLDKIPYGIRYICKQIYEALQRKF 161 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHC
Confidence 34567899999999999999 899999999999887777665444
No 195
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=20.20 E-value=6.2e+02 Score=22.53 Aligned_cols=119 Identities=17% Similarity=0.118 Sum_probs=68.8
Q ss_pred hccCCCchHHh-----hhHHHhhhccCcc---hhHHHHHHHHHHHHhhch--------------h--hhhhhHHHHHHHh
Q 028959 36 LSSADPSLAAE-----LFPYLVELQSSPE---SLVRKSLIETIEDIGLKA--------------M--EHSSILMPVLLAF 91 (201)
Q Consensus 36 ll~~dp~ll~~-----fl~~il~f~~d~~---~~VRk~v~~fiee~c~~~--------------~--el~~~~v~~L~~L 91 (201)
++++.|.++++ |+..-+.+..|.. .++|..+-.=|+.....+ | -++..++..+.+|
T Consensus 109 if~~yp~~~~d~~~~~Fl~~gl~l~vdG~~~~~~i~~iLe~ei~~~~~~~~~~~~v~~~~g~~aPa~GiiGtvlGLI~~l 188 (282)
T TIGR03818 109 IFSKYPKILKDHHLVEFICDYLRLMVMGNMNPHELEALMEEEIETHHHELLKPAHALQKVADALPGFGIVAAVLGVVITM 188 (282)
T ss_pred hhhhcchhhcccchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHH
Confidence 44556666655 8887777776543 347766665555444433 1 2344555555555
Q ss_pred hc-cCChhHHHHHHhhh--hhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCC
Q 028959 92 LR-DGDSGVAGKSIVCG--TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (201)
Q Consensus 92 L~-D~~~~VvK~aI~~~--t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~ 156 (201)
-+ |+||..+-..|..+ |++|-..+.++..--+. ++.....++-=..+.-+++-|+. ..+..|.
T Consensus 189 ~~l~~dp~~lG~~iA~Alv~TlyGv~lAn~i~~PiA-~kl~~~~~~e~~~~~~i~egi~a-i~~G~~P 254 (282)
T TIGR03818 189 GSIDGPPEVLGVLIAAALVGTFLGILLAYGFVGPLA-AALEQRVEEEIKFLECVKVTLVA-SLNGYAP 254 (282)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HhCCCCh
Confidence 44 45899999988888 99999999666433222 12222222333334556677777 4344443
Done!