Query 028959
Match_columns 201
No_of_seqs 105 out of 112
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:09:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gs3_A Symplekin, LD45768P; he 100.0 2.3E-55 7.8E-60 381.2 19.8 185 3-199 11-196 (257)
2 3o2t_A Symplekin; heat repeat, 100.0 1.6E-54 5.3E-59 394.4 20.0 188 3-199 21-209 (386)
3 2qk2_A LP04448P; mini spindles 97.4 0.0048 1.6E-07 50.1 13.6 107 8-117 98-210 (242)
4 2vgl_B AP-2 complex subunit be 97.3 0.0036 1.2E-07 58.1 13.4 92 17-111 95-188 (591)
5 1oyz_A Hypothetical protein YI 97.2 0.021 7.2E-07 46.8 16.2 123 43-168 87-218 (280)
6 2db0_A 253AA long hypothetical 97.1 0.0043 1.5E-07 52.2 10.4 101 9-110 108-208 (253)
7 3ltm_A Alpha-REP4; protein eng 97.0 0.028 9.7E-07 44.0 14.5 142 11-168 22-169 (211)
8 2qk1_A Protein STU2; STU2P, XM 97.0 0.015 5E-07 48.6 13.1 73 43-115 143-223 (249)
9 2vgl_B AP-2 complex subunit be 97.0 0.036 1.2E-06 51.3 16.9 152 13-169 18-187 (591)
10 2qk2_A LP04448P; mini spindles 96.9 0.012 4.2E-07 47.7 11.8 132 18-173 25-164 (242)
11 1b3u_A Protein (protein phosph 96.9 0.025 8.6E-07 50.3 14.4 70 43-112 161-232 (588)
12 2qk1_A Protein STU2; STU2P, XM 96.9 0.022 7.5E-07 47.5 13.1 137 18-172 26-176 (249)
13 1b3u_A Protein (protein phosph 96.8 0.017 5.8E-07 51.4 12.4 103 9-111 243-352 (588)
14 4fdd_A Transportin-1; heat rep 96.7 0.034 1.2E-06 53.0 15.0 106 6-111 88-202 (852)
15 4hxt_A De novo protein OR329; 96.7 0.16 5.3E-06 39.9 16.3 99 12-111 48-156 (252)
16 4db6_A Armadillo repeat protei 96.6 0.12 4.2E-06 40.0 15.3 95 16-111 20-124 (210)
17 3ltj_A Alpharep-4; protein eng 96.5 0.042 1.4E-06 42.7 11.9 144 10-169 47-196 (201)
18 3ltm_A Alpha-REP4; protein eng 96.4 0.15 5.1E-06 39.8 14.6 138 15-168 57-200 (211)
19 3u0r_A Apoptosis inhibitor 5; 96.4 0.01 3.6E-07 55.4 8.8 107 39-172 58-164 (507)
20 2vgl_A Adaptor protein complex 96.3 0.015 5.2E-07 54.8 9.5 98 10-110 113-214 (621)
21 1w63_A Adapter-related protein 96.2 0.01 3.6E-07 55.5 7.8 99 10-111 109-207 (618)
22 2jdq_A Importin alpha-1 subuni 96.1 0.066 2.2E-06 46.0 11.7 154 10-170 278-442 (450)
23 3ltj_A Alpharep-4; protein eng 96.0 0.38 1.3E-05 37.1 14.7 136 18-169 24-165 (201)
24 3tjz_B Coatomer subunit gamma; 96.0 0.21 7.1E-06 44.5 14.7 141 18-166 114-274 (355)
25 1te4_A Conserved protein MTH18 95.8 0.059 2E-06 39.7 9.0 54 51-110 47-100 (131)
26 1ibr_B P95, importin beta-1 su 95.8 0.047 1.6E-06 46.9 9.4 115 43-173 125-248 (462)
27 4hxt_A De novo protein OR329; 95.7 0.11 3.9E-06 40.7 10.8 102 10-112 130-241 (252)
28 2jdq_A Importin alpha-1 subuni 95.7 0.088 3E-06 45.2 10.6 94 18-111 30-135 (450)
29 1u6g_C TIP120 protein, CAND1; 95.6 0.57 2E-05 46.4 17.6 164 7-172 85-285 (1230)
30 1wa5_B Importin alpha subunit; 95.5 0.24 8.2E-06 44.4 13.5 94 18-111 97-201 (530)
31 1u6g_C TIP120 protein, CAND1; 95.5 0.7 2.4E-05 45.8 17.8 104 6-110 5-113 (1230)
32 1oyz_A Hypothetical protein YI 95.5 0.26 9E-06 40.1 12.5 85 19-110 102-186 (280)
33 1w63_A Adapter-related protein 95.5 0.052 1.8E-06 50.7 9.0 55 57-113 118-172 (618)
34 4b8j_A Importin subunit alpha- 95.4 0.5 1.7E-05 42.1 15.1 94 18-111 84-188 (528)
35 2bpt_A Importin beta-1 subunit 95.4 0.69 2.3E-05 43.1 16.4 151 7-171 368-529 (861)
36 4db6_A Armadillo repeat protei 95.3 0.24 8.3E-06 38.2 11.2 139 13-169 59-207 (210)
37 4db8_A Armadillo-repeat protei 95.0 0.21 7.2E-06 39.6 10.2 140 12-168 100-248 (252)
38 4db8_A Armadillo-repeat protei 94.9 0.18 6.2E-06 40.0 9.6 102 10-112 140-251 (252)
39 1qgr_A Protein (importin beta 94.8 0.25 8.6E-06 46.1 11.7 104 8-112 366-479 (876)
40 4fdd_A Transportin-1; heat rep 94.8 0.23 7.7E-06 47.3 11.4 104 8-111 359-470 (852)
41 2bpt_A Importin beta-1 subunit 94.6 0.59 2E-05 43.5 13.6 68 43-110 131-208 (861)
42 1qgr_A Protein (importin beta 94.6 0.19 6.5E-06 47.0 10.2 113 43-171 125-246 (876)
43 4b8j_A Importin subunit alpha- 94.4 1.6 5.3E-05 38.8 15.4 102 10-111 246-357 (528)
44 3tpo_A Importin subunit alpha- 93.9 0.65 2.2E-05 42.0 12.0 93 18-110 86-189 (529)
45 3tjz_B Coatomer subunit gamma; 93.8 1.1 3.7E-05 39.9 12.9 98 19-116 37-172 (355)
46 1xqr_A HSPBP1 protein; armadil 93.7 2.4 8.3E-05 36.1 14.7 151 21-172 53-239 (296)
47 1wa5_B Importin alpha subunit; 93.6 0.65 2.2E-05 41.5 11.3 92 20-111 227-327 (530)
48 2vgl_A Adaptor protein complex 93.5 0.22 7.5E-06 46.8 8.4 127 20-169 50-214 (621)
49 1te4_A Conserved protein MTH18 93.5 0.12 4.1E-06 38.0 5.3 61 43-110 9-69 (131)
50 3ul1_B Importin subunit alpha- 93.3 0.99 3.4E-05 40.7 12.2 93 18-111 67-171 (510)
51 3ul1_B Importin subunit alpha- 92.9 0.45 1.5E-05 43.0 9.1 115 45-170 357-477 (510)
52 1ibr_B P95, importin beta-1 su 92.7 0.68 2.3E-05 39.5 9.6 73 42-114 362-439 (462)
53 3tpo_A Importin subunit alpha- 92.6 0.53 1.8E-05 42.6 9.3 139 19-169 346-495 (529)
54 1xqr_A HSPBP1 protein; armadil 91.1 1.6 5.5E-05 37.3 10.1 102 9-113 129-239 (296)
55 4ady_A RPN2, 26S proteasome re 88.8 2.5 8.5E-05 42.4 10.6 96 8-110 577-674 (963)
56 1xm9_A Plakophilin 1; armadill 88.3 4.8 0.00017 35.7 11.4 100 7-110 5-114 (457)
57 3b2a_A TON_1937, putative unch 88.0 2.3 8E-05 36.5 8.6 73 5-77 147-220 (265)
58 4ffb_C Protein STU2; tubulin f 87.8 5.2 0.00018 32.8 10.6 73 42-114 135-214 (278)
59 2db0_A 253AA long hypothetical 87.6 5.4 0.00018 33.6 10.3 88 19-108 155-242 (253)
60 2of3_A ZYG-9; multifunctional 86.5 2.9 9.8E-05 35.7 8.4 89 27-115 109-239 (266)
61 2z6g_A B-catenin; FULL-length, 85.5 11 0.00038 35.9 12.9 68 43-110 147-220 (780)
62 2of3_A ZYG-9; multifunctional 85.2 17 0.00057 30.9 14.4 146 19-168 57-233 (266)
63 1jdh_A Beta-catenin; beta-cate 83.5 11 0.00039 32.6 11.1 90 21-110 240-337 (529)
64 1jdh_A Beta-catenin; beta-cate 82.7 9.1 0.00031 33.3 10.1 89 20-108 72-168 (529)
65 3u0r_A Apoptosis inhibitor 5; 81.3 7.6 0.00026 36.3 9.4 64 48-112 31-94 (507)
66 4atg_A TAF6; transcription, TF 81.2 17 0.00059 29.6 10.7 96 20-115 58-165 (196)
67 2z6h_A Catenin beta-1, beta-ca 78.7 11 0.00038 34.6 9.7 90 20-109 69-166 (644)
68 3l9t_A Putative uncharacterize 78.4 12 0.00043 31.5 9.1 93 6-107 69-163 (240)
69 1xm9_A Plakophilin 1; armadill 77.5 4.2 0.00015 36.1 6.3 64 48-111 4-72 (457)
70 2z6h_A Catenin beta-1, beta-ca 76.8 19 0.00064 33.0 10.6 90 21-110 237-334 (644)
71 4ffb_C Protein STU2; tubulin f 76.1 30 0.001 28.1 15.9 151 17-170 18-211 (278)
72 2z6g_A B-catenin; FULL-length, 73.6 25 0.00087 33.4 11.0 92 20-111 372-471 (780)
73 3tt9_A Plakophilin-2; cell adh 72.9 11 0.00036 31.3 7.2 64 48-111 10-80 (233)
74 3l9t_A Putative uncharacterize 71.8 11 0.00038 31.9 7.1 93 6-104 88-199 (240)
75 3now_A UNC-45 protein, SD10334 70.3 22 0.00077 34.8 9.9 89 24-112 597-694 (810)
76 3b2a_A TON_1937, putative unch 68.9 55 0.0019 28.0 11.4 76 78-169 184-259 (265)
77 3nmw_A APC variant protein; AR 67.4 13 0.00044 32.3 6.8 66 46-111 263-333 (354)
78 2rg8_A Programmed cell death p 65.0 29 0.00098 27.1 7.9 64 6-75 10-73 (165)
79 2x19_B Importin-13; nuclear tr 64.2 1E+02 0.0034 29.3 13.0 104 5-113 22-133 (963)
80 4hat_C Exportin-1; heat repeat 62.6 12 0.00041 37.4 6.3 71 43-113 492-570 (1023)
81 3opb_A SWI5-dependent HO expre 62.2 94 0.0032 30.4 12.4 129 24-171 575-728 (778)
82 3now_A UNC-45 protein, SD10334 60.6 27 0.00094 34.1 8.4 66 47-112 666-737 (810)
83 3nmz_A APC variant protein; pr 59.8 20 0.00069 32.4 6.9 66 45-110 378-448 (458)
84 3l6x_A Catenin delta-1; cateni 57.7 22 0.00076 33.4 7.0 72 40-111 42-118 (584)
85 2x19_B Importin-13; nuclear tr 55.8 28 0.00094 33.2 7.4 66 42-110 486-554 (963)
86 2nsz_A Programmed cell death p 54.7 47 0.0016 24.6 7.2 66 5-76 6-72 (129)
87 1wa5_C Importin alpha RE-expor 53.3 1.6E+02 0.0055 28.2 13.3 100 5-113 3-115 (960)
88 3ldz_A STAM-1, signal transduc 52.7 72 0.0024 24.0 8.4 35 45-79 84-121 (140)
89 2x1g_F Cadmus; transport prote 52.7 23 0.00078 34.0 6.3 68 42-112 501-572 (971)
90 3m1i_C Exportin-1; heat repeat 52.6 21 0.00072 34.9 6.1 70 43-112 492-569 (1049)
91 3qml_C Protein SLS1, nucleotid 52.2 44 0.0015 29.3 7.5 81 33-113 105-190 (315)
92 2ion_A PDCD4, programmed cell 50.8 55 0.0019 25.1 7.2 65 5-75 8-73 (152)
93 3ibv_A Exportin-T; karyopherin 49.0 17 0.00059 35.9 4.9 94 20-113 458-567 (980)
94 1t06_A Hypothetical protein; s 48.6 30 0.001 28.3 5.6 52 42-93 147-198 (235)
95 1wa5_C Importin alpha RE-expor 48.2 42 0.0014 32.3 7.4 67 43-109 451-522 (960)
96 3opb_A SWI5-dependent HO expre 47.5 28 0.00094 34.1 5.9 65 48-112 656-728 (778)
97 3tt9_A Plakophilin-2; cell adh 47.4 1.1E+02 0.0039 24.8 9.3 95 7-105 11-117 (233)
98 3nmw_A APC variant protein; AR 46.7 42 0.0014 29.0 6.5 53 58-110 96-154 (354)
99 4gmo_A Putative uncharacterize 45.0 41 0.0014 31.5 6.6 85 6-93 33-129 (684)
100 2cr7_A Paired amphipathic heli 44.0 46 0.0016 23.0 5.2 53 26-81 14-66 (80)
101 1ug3_A EIF4GI, eukaryotic prot 43.6 59 0.002 27.8 7.0 66 6-77 11-76 (339)
102 3us6_A Histidine-containing ph 42.7 89 0.0031 23.8 7.2 48 40-95 19-67 (153)
103 1x5b_A Signal transducing adap 42.6 1.2E+02 0.0039 23.5 8.6 35 45-79 94-132 (163)
104 3l6x_A Catenin delta-1; cateni 40.1 2.3E+02 0.008 26.4 12.4 47 48-94 357-406 (584)
105 2czy_A Paired amphipathic heli 40.0 52 0.0018 22.5 4.9 55 24-81 6-60 (77)
106 2b6c_A Hypothetical protein EF 37.9 62 0.0021 25.9 5.9 27 54-80 167-193 (220)
107 2jak_A Serine/threonine-protei 37.1 1.3E+02 0.0046 26.9 8.4 83 29-111 279-366 (392)
108 1lrv_A LRV, leucine-rich repea 35.5 26 0.00088 29.1 3.2 43 53-108 177-219 (244)
109 2npp_B PP2A, B subunit, serine 34.1 1.8E+02 0.0063 26.4 8.9 80 28-109 266-352 (449)
110 3jxy_A Alkylpurine DNA glycosy 33.1 93 0.0032 25.1 6.2 27 54-80 174-200 (232)
111 2x1g_F Cadmus; transport prote 33.1 1.8E+02 0.0061 27.7 9.1 103 5-109 83-215 (971)
112 2veb_A Protoglobin; hemoprotei 32.8 2E+02 0.0067 23.3 11.4 132 10-148 25-186 (195)
113 4dkc_A Interleukin-34, IL-34; 30.7 1.2E+02 0.004 24.5 6.1 71 26-114 82-162 (190)
114 3m1i_C Exportin-1; heat repeat 30.7 2.2E+02 0.0076 27.6 9.5 121 43-172 794-931 (1049)
115 4gmo_A Putative uncharacterize 30.2 81 0.0028 29.5 6.0 59 51-110 39-103 (684)
116 3fga_B Serine/threonine-protei 29.8 2.5E+02 0.0086 25.2 8.9 79 28-108 233-318 (403)
117 3nmz_A APC variant protein; pr 29.1 1.2E+02 0.004 27.3 6.7 134 20-170 299-449 (458)
118 4gl8_A Oligopeptide ABC transp 29.1 47 0.0016 29.6 4.0 35 7-41 456-490 (529)
119 4e6u_A Acyl-[acyl-carrier-prot 28.7 1.2E+02 0.0041 24.5 6.2 48 23-72 211-258 (265)
120 2zu6_B Programmed cell death p 27.8 1.6E+02 0.0054 25.2 7.0 63 7-75 4-66 (307)
121 3dad_A FH1/FH2 domain-containi 27.8 3.1E+02 0.011 24.0 9.6 96 8-105 119-224 (339)
122 1xg2_B Pectinesterase inhibito 27.6 1.3E+02 0.0043 21.9 5.7 32 87-118 55-86 (153)
123 3tj1_A RNA polymerase I-specif 26.9 4.2E+02 0.014 25.3 12.6 88 6-95 93-187 (649)
124 1lrv_A LRV, leucine-rich repea 25.5 34 0.0012 28.3 2.3 42 53-107 153-194 (244)
125 1vh6_A Flagellar protein FLIS; 24.9 2.3E+02 0.0079 21.5 7.5 31 7-37 31-64 (145)
126 2zu6_B Programmed cell death p 24.6 2.1E+02 0.0073 24.3 7.3 64 6-75 166-230 (307)
127 1e91_A Paired amphipathic heli 23.7 93 0.0032 21.6 4.0 59 24-83 9-75 (85)
128 1g1e_B SIN3A; four-helix bundl 23.7 66 0.0023 22.7 3.2 33 24-57 12-44 (89)
129 1zb1_A BRO1 protein; AIP1, BRO 23.6 3.6E+02 0.012 23.3 10.2 105 56-170 168-287 (392)
130 3l6a_A Eukaryotic translation 23.5 3E+02 0.01 23.9 8.2 63 8-76 14-77 (364)
131 2cj4_A Invertase inhibitor; pr 23.5 1.1E+02 0.0039 22.2 4.8 20 99-118 68-88 (150)
132 3a6p_A Exportin-5; exportin-5, 23.0 5.3E+02 0.018 25.8 10.7 103 7-113 11-126 (1204)
133 1ng6_A Hypothetical protein YQ 22.3 2.6E+02 0.0088 21.2 8.6 59 46-105 85-144 (148)
134 2w31_A Globin; oxygen transpor 22.2 2.3E+02 0.008 20.7 8.3 54 24-77 16-77 (162)
135 1h2v_C 80 kDa nuclear CAP bind 21.9 5.4E+02 0.019 24.8 11.1 136 6-145 46-223 (771)
136 3i7a_A Putative metal-dependen 21.9 3.2E+02 0.011 22.2 9.0 108 27-140 7-123 (281)
137 3iqc_A FLIS, flagellar protein 21.9 1.9E+02 0.0063 21.6 5.7 31 7-37 34-67 (131)
138 3r0s_A Acyl-[acyl-carrier-prot 21.9 1.7E+02 0.0059 23.7 5.9 44 24-72 209-252 (266)
139 3r9m_A BRO1 domain-containing 21.8 3.9E+02 0.013 23.1 11.5 100 57-170 172-283 (376)
140 1vdy_A Hypothetical protein (R 21.8 2.1E+02 0.0071 21.8 6.0 100 47-153 31-131 (140)
141 3kor_A Possible Trp repressor; 21.4 1.3E+02 0.0045 22.6 4.6 69 43-118 29-113 (119)
142 3a6p_A Exportin-5; exportin-5, 20.8 2.9E+02 0.0098 27.7 8.3 55 41-95 524-584 (1204)
143 3zs6_A Periplasmic oligopeptid 20.7 1.1E+02 0.0039 27.0 4.9 35 7-41 434-468 (506)
144 3t66_A Nickel ABC transporter 20.4 1.1E+02 0.0037 27.2 4.7 37 6-42 415-451 (496)
No 1
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=100.00 E-value=2.3e-55 Score=381.20 Aligned_cols=185 Identities=20% Similarity=0.253 Sum_probs=173.4
Q ss_pred cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhh
Q 028959 3 AVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS 82 (201)
Q Consensus 3 ~s~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~ 82 (201)
+++||||++|||+|+.++| ++|+++|+|+||+++++||+|||+||+++++|++|++.+||||+++||||+|++++++++
T Consensus 11 ~~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~ 89 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP 89 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred ccHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999998 699999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCc-chhhHHHHHHHHHHhHHHHHHHhccCCCCchhHH
Q 028959 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK-VERWLEELWTWMVRFKDAVFAIALEPGLVGTKLL 161 (201)
Q Consensus 83 ~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~-~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~ 161 (201)
+++++|.+||+|+||+|+|++|+|+|++||.+| +|++.++ .+++++++|++|++||++|++ +|+++|+|||++
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l-----~~i~~~~~~~~~~~~~W~~m~~lK~~Il~-~~~s~n~gvkl~ 163 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGL-----QYLCSLMEPGDSAEQAWNILSLIKAQILD-MIDNENDGIRTN 163 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH-----HHHTTSSSCCHHHHHHHHHHHHHHHHHHH-GGGSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-----HHHhcCCCCcchHHHHHHHHHHHHHHHHH-HHccCCcchHHH
Confidence 999999999999999999999999999999999 8888776 778899999999999999999 899999999999
Q ss_pred HHHhhhHhhhhccCCCCCCccccccccccceehhhhcc
Q 028959 162 ALKFLETHVLLFTSDSNDFENFTKEGIAFLFVMAIYLK 199 (201)
Q Consensus 162 aiKF~E~vIL~qT~~~~d~~~~~~~~~~~~~~~~~~~~ 199 (201)
|+||+|+||++||++.++ .|++++ +||++|++.
T Consensus 164 ~iKF~e~vIl~qT~~~~~--~~~~~~---d~SL~~Vp~ 196 (257)
T 3gs3_A 164 AIKFLEGVVVLQSFADED--SLKRDG---DFSLADVPD 196 (257)
T ss_dssp HHHHHHHHHHHTSCCCTT--SCCCTT---CCCGGGSCS
T ss_pred HHHHHHHHHHhhcCCCcc--cCCCCC---CCCHHHCCC
Confidence 999999999999966443 444433 899999875
No 2
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=100.00 E-value=1.6e-54 Score=394.44 Aligned_cols=188 Identities=21% Similarity=0.304 Sum_probs=178.7
Q ss_pred cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhh
Q 028959 3 AVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS 82 (201)
Q Consensus 3 ~s~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~ 82 (201)
+|++|||++|||+|+.+++ ++|+++|+|+|||++++||+||+|||++|++|++|++.+||||+++||||+|++++|+++
T Consensus 21 ~~~~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~ 99 (386)
T 3o2t_A 21 MTTSERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL 99 (386)
T ss_dssp CCHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred ccHHHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999877 499999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCc-chhhHHHHHHHHHHhHHHHHHHhccCCCCchhHH
Q 028959 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK-VERWLEELWTWMVRFKDAVFAIALEPGLVGTKLL 161 (201)
Q Consensus 83 ~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~-~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~ 161 (201)
+++++|.+||+|+||+|+|++|+|+++|||.+| ||+++++ .+++++++|++|++||++|++ +|+++|+|||++
T Consensus 100 ~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f-----~~i~~~~~~~~~~e~~W~~m~~lK~~Il~-~~ds~n~GVrl~ 173 (386)
T 3o2t_A 100 KLIANLNMLLRDENVNVVKKAILTMTQLYKVAL-----QWMVKSRVISELQEACWDMVSAMAGDIIL-LLDSDNDGIRTH 173 (386)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH-----HHHHHC-CCCHHHHHHHHHHHHHHHHHHH-GGGCSSHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-----HHHhcCCCcchhHHHHHHHHHHHHHHHHH-HhccCCcchHHH
Confidence 999999999999999999999999999999999 8888888 567899999999999999999 899999999999
Q ss_pred HHHhhhHhhhhccCCCCCCccccccccccceehhhhcc
Q 028959 162 ALKFLETHVLLFTSDSNDFENFTKEGIAFLFVMAIYLK 199 (201)
Q Consensus 162 aiKF~E~vIL~qT~~~~d~~~~~~~~~~~~~~~~~~~~ 199 (201)
|+||+|+||++||++++|++.|++++ .+|+++|++.
T Consensus 174 aiKFle~VIl~qS~~~~d~~~p~~~~--~d~SL~~VP~ 209 (386)
T 3o2t_A 174 AIKFVEGLIVTLSPRMADSEIPRRQE--HDISLDRIPR 209 (386)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCGGGT--TSCCGGGSCT
T ss_pred HHHHHHHHHHHhCCCCCCcccccccC--CCCCHhhCCC
Confidence 99999999999999999999888764 5899999875
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.36 E-value=0.0048 Score=50.13 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch------hhhh
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA------MEHS 81 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~------~el~ 81 (201)
.++..|-+....++...+-.....+..++.. . -++.+++.++..-.++++.||..++++|..+...+ ..++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~-~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYAS--T-SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--S-CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 4455555554445555666666666666533 2 26888999998778889999999999999865432 3578
Q ss_pred hhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHH
Q 028959 82 SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (201)
Q Consensus 82 ~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~ 117 (201)
+.++|.|..+|+|.++.|=+.|+.|.+.+++.+=++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence 899999999999999999999999999999877543
No 4
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.28 E-value=0.0036 Score=58.08 Aligned_cols=92 Identities=10% Similarity=0.100 Sum_probs=75.2
Q ss_pred hcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhh--hHHHHHHHhhcc
Q 028959 17 NNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS--ILMPVLLAFLRD 94 (201)
Q Consensus 17 ~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~--~~v~~L~~LL~D 94 (201)
...+|...+...|+.+-.+ ..|.+.+.+++.+.....|+++.|||-.+--+..+++.+|+.++ ..++.|..+|.|
T Consensus 95 L~~~n~~ir~~AL~~L~~i---~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d 171 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGCI---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIAD 171 (591)
T ss_dssp SSSSSHHHHHHHHHHHHTC---CSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC
T ss_pred cCCCCHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCC
Confidence 3445544555555554443 37778899999999999999999999999999999999999887 589999999999
Q ss_pred CChhHHHHHHhhhhhhh
Q 028959 95 GDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 95 ~~~~VvK~aI~~~t~ly 111 (201)
++|.|...|+.+...+.
T Consensus 172 ~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 172 SNPMVVANAVAALSEIS 188 (591)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHH
Confidence 99999999998877654
No 5
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.23 E-value=0.021 Score=46.78 Aligned_cols=123 Identities=12% Similarity=-0.037 Sum_probs=76.0
Q ss_pred hHHhhhHHHh-hhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHH-HHHHHhh
Q 028959 43 LAAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR-VLEEITM 120 (201)
Q Consensus 43 ll~~fl~~il-~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~-~L~~~~~ 120 (201)
..+.+++-+. .+..|++..||...+.-++..|..++...+.+++.|..+|+|+++.|-..++.+...+-.. ++..+.
T Consensus 87 ~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~- 165 (280)
T 1oyz_A 87 CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLI- 165 (280)
T ss_dssp THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHH-
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence 3444444443 2447888899999999999998887777788889999999999999988888887776432 221111
Q ss_pred hhhccCcchhhHHHHHHHHHHhH-------HHHHHHhccCCCCchhHHHHHhhhH
Q 028959 121 QFRWHGKVERWLEELWTWMVRFK-------DAVFAIALEPGLVGTKLLALKFLET 168 (201)
Q Consensus 121 q~i~~~~~~~~~~~~W~~m~~lK-------~~Il~~~~~s~n~GVr~~aiKF~E~ 168 (201)
+.+.... ..--..+...+..+. ..++. ++.+++..||..|+.-+-.
T Consensus 166 ~~l~d~~-~~vr~~a~~aL~~~~~~~~~~~~~L~~-~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 166 NLLKDPN-GDVRNWAAFAININKYDNSDIRDCFVE-MLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp HHHTCSS-HHHHHHHHHHHHHHTCCCHHHHHHHHH-HTTCSCHHHHHHHHHHHHH
T ss_pred HHHcCCC-HHHHHHHHHHHHhhccCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHH
Confidence 2222221 111222333334432 34445 5566778888888866543
No 6
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.07 E-value=0.0043 Score=52.25 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=85.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHH
Q 028959 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVL 88 (201)
Q Consensus 9 v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L 88 (201)
++..|-+--..+|.+.|+..=..+.|+. ..+|+++++.+.++..+..|++-.=|-....||+..|-.+++++.--+|.|
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIa-ranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL 186 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIA-KANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRI 186 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHH
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHH-HhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHH
Confidence 4455554445589888888777777766 559999999999999999999998999999999999999999999999999
Q ss_pred HHhhccCChhHHHHHHhhhhhh
Q 028959 89 LAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 89 ~~LL~D~~~~VvK~aI~~~t~l 110 (201)
..||.|.|..|=-.++-+.+++
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~l 208 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHL 208 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCcchhhhHHHHHHHHHH
Confidence 9999999988877777766554
No 7
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.03 E-value=0.028 Score=44.03 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=76.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 028959 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA 90 (201)
Q Consensus 11 ~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~ 90 (201)
+.|-+....+|...+...+..+.++- + ++.++.++++..|++..||...+.-+.+.+. +..++.|..
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~---~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~ 88 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIG---D----ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEPLIK 88 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC---C----GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC---C----ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHHHHH
Confidence 33333334566666666666555532 2 3556666666667778888888877777763 345666667
Q ss_pred hhccCChhHHHHHHhhhhhhhHH-HHHHHhhhhhccCcchhhHHHHHHHHHHhH-----HHHHHHhccCCCCchhHHHHH
Q 028959 91 FLRDGDSGVAGKSIVCGTNFFCR-VLEEITMQFRWHGKVERWLEELWTWMVRFK-----DAVFAIALEPGLVGTKLLALK 164 (201)
Q Consensus 91 LL~D~~~~VvK~aI~~~t~lyr~-~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK-----~~Il~~~~~s~n~GVr~~aiK 164 (201)
+|+|+++.|-..++.+...+-.. ++..+. +.+. ++...--..+-..+..+. ..+.. ++++.+..||..|+.
T Consensus 89 ~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~a~~ 165 (211)
T 3ltm_A 89 ALKDEDGWVRQSAAVALGQIGDERAVEPLI-KALK-DEDWFVRIAAAFALGEIGDERAVEPLIK-ALKDEDGWVRQSAAD 165 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT-CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTCSSHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCcHHHHHHHH-HHHh-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHcCCCHHHHHHHHH
Confidence 77777777777777766654221 111111 2221 221112223333333332 23444 445666677777765
Q ss_pred hhhH
Q 028959 165 FLET 168 (201)
Q Consensus 165 F~E~ 168 (201)
-+-.
T Consensus 166 aL~~ 169 (211)
T 3ltm_A 166 ALGE 169 (211)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.015 Score=48.64 Aligned_cols=73 Identities=5% Similarity=0.047 Sum_probs=63.8
Q ss_pred hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchh-------hhh-hhHHHHHHHhhccCChhHHHHHHhhhhhhhHHH
Q 028959 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM-------EHS-SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (201)
Q Consensus 43 ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~-------el~-~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~ 114 (201)
.++.+++.+++.-..+++.+|...+.||..++.... .++ +.++|.|..+|.|+++.|=+.|+.|.+.+|+.+
T Consensus 143 ~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 143 RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp TTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 388999999987777789999999999998886543 367 999999999999999999999999999999866
Q ss_pred H
Q 028959 115 L 115 (201)
Q Consensus 115 L 115 (201)
=
T Consensus 223 G 223 (249)
T 2qk1_A 223 G 223 (249)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.98 E-value=0.036 Score=51.28 Aligned_cols=152 Identities=11% Similarity=0.019 Sum_probs=94.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhc-cCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHh
Q 028959 13 LAAANNHGDLAVKLSSLKQVRGILS-SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF 91 (201)
Q Consensus 13 Ln~A~~~~d~~~Kl~~L~q~~elll-~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~L 91 (201)
|.+.-..+|...|.+.++++--+.. +.|. +.++++++.+..+++..+||-+--+++..++.+++++.-++++|..-
T Consensus 18 i~~~L~~~~~~~k~~~~~kli~~~~~G~d~---~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kd 94 (591)
T 2vgl_B 18 LKAELNNEKKEKRKEAVKKVIAAMTVGKDV---SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKD 94 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHTTCCC---GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCCh---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHH
Confidence 3333445677788888888766553 4443 44577788888889999999998888888777777777777777777
Q ss_pred hccCChhHHHHHHhhhhhh-----hHHHHHHHhhhhhccCcchhhHHHHHHHHH------------HhHHHHHHHhccCC
Q 028959 92 LRDGDSGVAGKSIVCGTNF-----FCRVLEEITMQFRWHGKVERWLEELWTWMV------------RFKDAVFAIALEPG 154 (201)
Q Consensus 92 L~D~~~~VvK~aI~~~t~l-----yr~~L~~~~~q~i~~~~~~~~~~~~W~~m~------------~lK~~Il~~~~~s~ 154 (201)
|.|+||.|..-|+.+.+++ .+.+...+ .+.+.+....---..+|.... .+-..+.. ++++.
T Consensus 95 L~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l-~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~-lL~d~ 172 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGCIRVDKITEYLCEPL-RKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRD-LIADS 172 (591)
T ss_dssp SSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHH-HHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH-TTSCS
T ss_pred cCCCCHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHH-HhCCC
Confidence 7777777776666666653 22211111 122221111111223332222 23356666 66777
Q ss_pred CCchhHHHHHhhhHh
Q 028959 155 LVGTKLLALKFLETH 169 (201)
Q Consensus 155 n~GVr~~aiKF~E~v 169 (201)
+.+|+.+|+..+-.+
T Consensus 173 d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 173 NPMVVANAVAALSEI 187 (591)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 889999998887664
No 10
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.92 E-value=0.012 Score=47.68 Aligned_cols=132 Identities=11% Similarity=0.111 Sum_probs=96.4
Q ss_pred cCCChHHHHHHHHHHHHhhcc-CC--CchHHhhhHHHhhhcc-CcchhHHHHHHHHHHHHhhch----hhhhhhHHHHHH
Q 028959 18 NHGDLAVKLSSLKQVRGILSS-AD--PSLAAELFPYLVELQS-SPESLVRKSLIETIEDIGLKA----MEHSSILMPVLL 89 (201)
Q Consensus 18 ~~~d~~~Kl~~L~q~~elll~-~d--p~ll~~fl~~il~f~~-d~~~~VRk~v~~fiee~c~~~----~el~~~~v~~L~ 89 (201)
...|-.+|...+..+..++-. .+ +.-+.++++.+..... |++..||.....-++..++.- ..+...++|.|.
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLL 104 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 457778899999999998865 11 2345788888887775 999999999999999888633 367889999999
Q ss_pred HhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHh
Q 028959 90 AFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (201)
Q Consensus 90 ~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~v 169 (201)
..+.|.++.|-..+..+...++.. .+ .+ .+=..++. .+++.|..||..++.|+..+
T Consensus 105 ~~l~d~~~~vr~~a~~aL~~~~~~------------~~----~~-------~ll~~l~~-~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 105 EKFKEKKPNVVTALREAIDAIYAS------------TS----LE-------AQQESIVE-SLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTT------------SC----HH-------HHHHHHHH-HTTCSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHc------------CC----HH-------HHHHHHHH-HHcCCChHHHHHHHHHHHHH
Confidence 999999988877777776655431 11 12 22233455 56677788888888888877
Q ss_pred hhhc
Q 028959 170 VLLF 173 (201)
Q Consensus 170 IL~q 173 (201)
+-.+
T Consensus 161 l~~~ 164 (242)
T 2qk2_A 161 LTRT 164 (242)
T ss_dssp HTTC
T ss_pred HHHc
Confidence 5443
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.88 E-value=0.025 Score=50.25 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=57.6
Q ss_pred hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch--hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA--MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 43 ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~--~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
..+++++.+.++..|++..||+..++.+++.+... ..+.+.++|.|..+++|+++.|-+.++.+...+..
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 34677777778889999999999999999988743 35678899999999999999998888888776543
No 12
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.022 Score=47.53 Aligned_cols=137 Identities=9% Similarity=0.042 Sum_probs=99.1
Q ss_pred cCCChHHHHHHHHHHHH-hhccCCCc------hHHhhhHHHhhhc-cCcchhHHHHHHHHHHHHhhch-----h-hhhhh
Q 028959 18 NHGDLAVKLSSLKQVRG-ILSSADPS------LAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKA-----M-EHSSI 83 (201)
Q Consensus 18 ~~~d~~~Kl~~L~q~~e-lll~~dp~------ll~~fl~~il~f~-~d~~~~VRk~v~~fiee~c~~~-----~-el~~~ 83 (201)
.+++-.++.+.|..+.. ++-+ .|. -+.++++.+.... .|.+..||...+.-|++++..- . .+...
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 45777788899999998 7743 332 3468888888776 8999999988888787776522 2 68889
Q ss_pred HHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHH
Q 028959 84 LMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLAL 163 (201)
Q Consensus 84 ~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~ai 163 (201)
++|.+...+.|..+.|...+..|.-.++..+= .+.. .+ ..+.+++ +++. .+++.|..+|..++
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~-----~~~~-~~---~l~~ll~-------~l~~-~l~~k~~~vk~~al 167 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYD-----PLAS-SG---RNEDMLK-------DILE-HMKHKTPQIRMECT 167 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-----TTCT-TC---TTHHHHH-------HHHH-HTTCSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-----cccc-CC---cHHHHHH-------HHHH-HHcCCChHHHHHHH
Confidence 99999999999999988887777766666431 1000 00 1334444 4455 67888999999999
Q ss_pred HhhhHhhhh
Q 028959 164 KFLETHVLL 172 (201)
Q Consensus 164 KF~E~vIL~ 172 (201)
+|+-+++-.
T Consensus 168 ~~l~~~~~~ 176 (249)
T 2qk1_A 168 QLFNASMKE 176 (249)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 13
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.77 E-value=0.017 Score=51.36 Aligned_cols=103 Identities=14% Similarity=0.181 Sum_probs=63.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc-hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchh------hhh
Q 028959 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM------EHS 81 (201)
Q Consensus 9 v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~-ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~------el~ 81 (201)
++..+.......+-..|......+..+.-.-++. ..+.+++.++.+..|++.+||+..+..+++++.... .+.
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 322 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH
Confidence 3344444433344334444444444433221222 345667777777778888888888888877776442 467
Q ss_pred hhHHHHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 82 SILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 82 ~~~v~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
+.++|.+..+++|.++.|-+.+..+...+-
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 778888888888888887777776666654
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.74 E-value=0.034 Score=52.99 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhh-----
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH----- 80 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el----- 80 (201)
++.+-+.|=++-..++...+...-.-+.++.-+..|.-.+++++.+++...+++..+|......+..+|...++.
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~ 167 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV 167 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhh
Confidence 344444444443344444444444445555544346677888888888888888889999888888888866544
Q ss_pred ----hhhHHHHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 81 ----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 81 ----~~~~v~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
+..+++.+..++.|+++.|-..|+.|.+++.
T Consensus 168 ~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 168 LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI 202 (852)
T ss_dssp SSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTT
T ss_pred hcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5668888888888989998888888876554
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.69 E-value=0.16 Score=39.91 Aligned_cols=99 Identities=22% Similarity=0.170 Sum_probs=72.5
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCCCchH-----HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhh----
Q 028959 12 LLAAANNHGDLAVKLSSLKQVRGILSSADPSLA-----AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS---- 82 (201)
Q Consensus 12 lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll-----~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~---- 82 (201)
.|-+.-..++...+...+..+..+..+ ++..- ...++.++.+-.+++.++|...+..+...|..+++...
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 126 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 126 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333333445666777777777777644 23322 24688888888889999999999999999975544332
Q ss_pred -hHHHHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 83 -ILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 83 -~~v~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
..++.|..+|+++++.|.+.++.+..+|-
T Consensus 127 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 127 AGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57889999999999999999988888774
No 16
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.65 E-value=0.12 Score=39.95 Aligned_cols=95 Identities=21% Similarity=0.250 Sum_probs=73.2
Q ss_pred hhcCCChHHHHHHHHHHHHhhccCCCchH-----HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh-----hhHH
Q 028959 16 ANNHGDLAVKLSSLKQVRGILSSADPSLA-----AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILM 85 (201)
Q Consensus 16 A~~~~d~~~Kl~~L~q~~elll~~dp~ll-----~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~-----~~~v 85 (201)
-..++|...+...+..+..+..+ ++... ...++.++++-.+++.++|...+..|..++..+++.. ...+
T Consensus 20 LL~s~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 98 (210)
T 4db6_A 20 QLNSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH
Confidence 33456777888888888888744 33322 2567888888888899999999999999997554432 3367
Q ss_pred HHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 86 PVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 86 ~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
+.|..+|.++++.|.+.+..+..+|-
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~ 124 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIA 124 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 89999999999999999988888775
No 17
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.55 E-value=0.042 Score=42.71 Aligned_cols=144 Identities=19% Similarity=0.102 Sum_probs=86.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHH
Q 028959 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLL 89 (201)
Q Consensus 10 ~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~ 89 (201)
+..|-++...+|...+...+..+.++- +| +.++.++..-.|++..||...+.-+...+. +..++.|.
T Consensus 47 ~~~L~~~l~~~~~~vr~~a~~~L~~~~---~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~ 113 (201)
T 3ltj_A 47 VEPLIKALKDEDAWVRRAAADALGQIG---DE----RAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLI 113 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC---CG----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhC---CH----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHH
Confidence 333444444567666766666665542 33 556667777788899999999999988764 34677788
Q ss_pred HhhccCChhHHHHHHhhhhhhhH-HHHHHHhhhhhccCcchhhHHHHHHHHHHhH-----HHHHHHhccCCCCchhHHHH
Q 028959 90 AFLRDGDSGVAGKSIVCGTNFFC-RVLEEITMQFRWHGKVERWLEELWTWMVRFK-----DAVFAIALEPGLVGTKLLAL 163 (201)
Q Consensus 90 ~LL~D~~~~VvK~aI~~~t~lyr-~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK-----~~Il~~~~~s~n~GVr~~ai 163 (201)
.+|+|+++.|-..++.+.+.+-. .++..+. +.+. ++...--..+-.++..+. ..+.. ++++.+..||..|+
T Consensus 114 ~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~-d~~~~vr~~A~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~A~ 190 (201)
T 3ltj_A 114 KALKDEDWFVRIAAAFALGEIGDERAVEPLI-KALK-DEDGWVRQSAADALGEIGGERVRAAMEK-LAETGTGFARKVAV 190 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTCGGGHHHHH-HHTT-CSSHHHHHHHHHHHHHHCSHHHHHHHHH-HHHHCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCHHHHHHHH-HHHc-CCCHHHHHHHHHHHHHhCchhHHHHHHH-HHhCCCHHHHHHHH
Confidence 88899999998888888776642 1111111 2222 221112233333333332 33444 44567778888888
Q ss_pred HhhhHh
Q 028959 164 KFLETH 169 (201)
Q Consensus 164 KF~E~v 169 (201)
+-+.++
T Consensus 191 ~aL~~l 196 (201)
T 3ltj_A 191 NYLETH 196 (201)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 766543
No 18
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.42 E-value=0.15 Score=39.79 Aligned_cols=138 Identities=17% Similarity=0.085 Sum_probs=87.4
Q ss_pred HhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhcc
Q 028959 15 AANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (201)
Q Consensus 15 ~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D 94 (201)
++...+|...+...+..+.++- + ++.++.++++-.|++..||...+.-++..+. +..++.|..+|+|
T Consensus 57 ~~l~~~~~~vr~~a~~aL~~~~---~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d 123 (211)
T 3ltm_A 57 KALKDEDAWVRRAAADALGQIG---D----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKD 123 (211)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHC---C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHHHHHHhhC---C----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhC
Confidence 3333456556666666555542 2 3566777777789999999999999998875 3567888889999
Q ss_pred CChhHHHHHHhhhhhhhHH-HHHHHhhhhhccCcchhhHHHHHHHHHHhH-----HHHHHHhccCCCCchhHHHHHhhhH
Q 028959 95 GDSGVAGKSIVCGTNFFCR-VLEEITMQFRWHGKVERWLEELWTWMVRFK-----DAVFAIALEPGLVGTKLLALKFLET 168 (201)
Q Consensus 95 ~~~~VvK~aI~~~t~lyr~-~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK-----~~Il~~~~~s~n~GVr~~aiKF~E~ 168 (201)
+++.|-..++.+.+.+-.. ++..+. +.+ .++...--..+-..+..+. ..+.. ++++++..||..|+.-+..
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLI-KAL-KDEDGWVRQSAADALGEIGGERVRAAMEK-LAETGTGFARKVAVNYLET 200 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHT-TCSSHHHHHHHHHHHHHHCSHHHHHHHHH-HHHHCCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH-HHH-cCCCHHHHHHHHHHHHHhCchhHHHHHHH-HHhCCCHHHHHHHHHHHHh
Confidence 9999999999988776321 121111 333 2221222334444444443 33444 5566778899888866544
No 19
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.42 E-value=0.01 Score=55.43 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=69.1
Q ss_pred CCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHH
Q 028959 39 ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEI 118 (201)
Q Consensus 39 ~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~ 118 (201)
.-|+|-++-++.++.+..|.+..||++.+.=|-.+|+- ++++++.++|..||.-+++.-+..+=.+..+||+.==
T Consensus 58 ~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp--- 132 (507)
T 3u0r_A 58 HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDA--- 132 (507)
T ss_dssp GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH---
T ss_pred hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcCh---
Confidence 35777777777788888888888888888888888866 7788888888888886666555544444444444110
Q ss_pred hhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhh
Q 028959 119 TMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (201)
Q Consensus 119 ~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~ 172 (201)
=.+++.+=++|.. +.+.+|.-++||+-.-+.-
T Consensus 133 -----------------k~tl~~lf~~i~~-----~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 133 -----------------KGTLGGLFSQILQ-----GEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp -----------------HHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHGGG
T ss_pred -----------------HHHHHHHHHHHcc-----cchHHHHHHHHHHHHHHhh
Confidence 0112222233333 5678888888888555433
No 20
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.31 E-value=0.015 Score=54.75 Aligned_cols=98 Identities=9% Similarity=0.033 Sum_probs=80.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhc--cCcchhHHHHHHHHHHHHhhchhhhhh--hHH
Q 028959 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ--SSPESLVRKSLIETIEDIGLKAMEHSS--ILM 85 (201)
Q Consensus 10 ~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~--~d~~~~VRk~v~~fiee~c~~~~el~~--~~v 85 (201)
+..+.....+++.-.+.-.|+.+-.+ ..|++.+.+++.+.... .|+++-|||-.+--+..+++.+|++++ ..+
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i---~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~ 189 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANV---GSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 189 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHH---CCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHH
Confidence 44444444456655666667766665 36889999999999888 999999999999999999999999999 899
Q ss_pred HHHHHhhccCChhHHHHHHhhhhhh
Q 028959 86 PVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 86 ~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
+.|..+|.|.||.|+-.|+.+...+
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHH
Confidence 9999999999999998888765554
No 21
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.23 E-value=0.01 Score=55.47 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=74.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHH
Q 028959 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLL 89 (201)
Q Consensus 10 ~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~ 89 (201)
++.|.....+++.-.+...|+.+-.+- +|.+.+.+++.+..+..|+++.|||-.+--+..+++++|+++...++.|.
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~ 185 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATK 185 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTT
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 444444444444445666666655543 56677888888888888899999999999999999999999999999999
Q ss_pred HhhccCChhHHHHHHhhhhhhh
Q 028959 90 AFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 90 ~LL~D~~~~VvK~aI~~~t~ly 111 (201)
.+|.|.||.|+-.|+.+...+.
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMC 207 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHC
T ss_pred HHhCCCCHhHHHHHHHHHHHHH
Confidence 9999999999888876665543
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.10 E-value=0.066 Score=46.04 Aligned_cols=154 Identities=15% Similarity=0.057 Sum_probs=98.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc----hH-HhhhHHHhhhccCcchhHHHHHHHHHHHHhhc-hhhhh--
Q 028959 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHS-- 81 (201)
Q Consensus 10 ~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~----ll-~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~-~~el~-- 81 (201)
+..|-+....++...+...+..+..+..+ ++. ++ ..+++.++.+-.+++.+||+..+..|..++.. .++..
T Consensus 278 l~~L~~ll~~~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 356 (450)
T 2jdq_A 278 LQSLLHLLSSPKESIKKEACWTISNITAG-NRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 356 (450)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 33343444445556677777777776643 222 22 36788888887788999999999999988864 33322
Q ss_pred ---hhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCch
Q 028959 82 ---SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGT 158 (201)
Q Consensus 82 ---~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GV 158 (201)
..+++.|..+|+++++.|.+.++.+..++....=...- ...+..++......+ .. .-+.+.. +.++.|..|
T Consensus 357 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~---~~~~~~~~~~~~l~~-~g-~~~~l~~-l~~~~~~~v 430 (450)
T 2jdq_A 357 LVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK---RNGTGINPYCALIEE-AY-GLDKIEF-LQSHENQEI 430 (450)
T ss_dssp HHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHH---HSCSCCCHHHHHHHH-HH-CHHHHHH-HHCHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh---ccccchhHHHHHHHH-cC-cHHHHHH-HHcCCCHHH
Confidence 25889999999999999999999988888764331100 000111112222211 11 1233555 567788899
Q ss_pred hHHHHHhhhHhh
Q 028959 159 KLLALKFLETHV 170 (201)
Q Consensus 159 r~~aiKF~E~vI 170 (201)
+..|++.++.+.
T Consensus 431 ~~~a~~~l~~~~ 442 (450)
T 2jdq_A 431 YQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
Confidence 999999998874
No 23
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.98 E-value=0.38 Score=37.09 Aligned_cols=136 Identities=14% Similarity=0.032 Sum_probs=89.4
Q ss_pred cCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCCh
Q 028959 18 NHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDS 97 (201)
Q Consensus 18 ~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~ 97 (201)
..+|...+...+..+.++- + ++.++.++++-.|++..||...+..+++.+. +..++.|..+|+|+++
T Consensus 24 ~~~~~~vr~~A~~~L~~~~---~----~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~ 90 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIG---D----ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEPLIKALKDEDG 90 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHC---C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSH
T ss_pred cCCCHHHHHHHHHHHHhcC---C----hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcCCCH
Confidence 3466667777766666543 2 3566777777789999999999999998874 3567888889999999
Q ss_pred hHHHHHHhhhhhhhHH-HHHHHhhhhhccCcchhhHHHHHHHHHHhH-----HHHHHHhccCCCCchhHHHHHhhhHh
Q 028959 98 GVAGKSIVCGTNFFCR-VLEEITMQFRWHGKVERWLEELWTWMVRFK-----DAVFAIALEPGLVGTKLLALKFLETH 169 (201)
Q Consensus 98 ~VvK~aI~~~t~lyr~-~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK-----~~Il~~~~~s~n~GVr~~aiKF~E~v 169 (201)
.|-..++.+.+.+-.. ++..+. +.+. ++...--..+-..+..+. ..+.. ++.+.+..||..|+.-+-.+
T Consensus 91 ~vr~~a~~aL~~~~~~~~~~~L~-~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 91 WVRQSAAVALGQIGDERAVEPLI-KALK-DEDWFVRIAAAFALGEIGDERAVEPLIK-ALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHH-HHTT-CSSHHHHHHHHHHHHHHTCGGGHHHHHH-HTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHH-HHHc-CCCHHHHHHHHHHHHHhCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHh
Confidence 9999999988875433 222221 3332 221112233444444443 34555 55667778998888766554
No 24
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.98 E-value=0.21 Score=44.52 Aligned_cols=141 Identities=7% Similarity=0.019 Sum_probs=99.2
Q ss_pred cCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCCh
Q 028959 18 NHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDS 97 (201)
Q Consensus 18 ~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~ 97 (201)
.+++.-.+.-.|+.+-.+. +|+++..+.+.+-.-..|+++-|||--+==....+..+|+++.+.++.+..++.|.||
T Consensus 114 ~~~N~~iR~lALRtL~~I~---~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~ 190 (355)
T 3tjz_B 114 TGKEDSYRGPAVRALCQIT---DSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNI 190 (355)
T ss_dssp HSSCHHHHHHHHHHHHHHC---CTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSH
T ss_pred CCCcHhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCc
Confidence 3445447777777777765 8999999999999999999999999877667788999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhH---HHHHHHhhhhhccCcchhhHHHHHHHHHHhH--------------HHHHHH---hccCCCCc
Q 028959 98 GVAGKSIVCGTNFFC---RVLEEITMQFRWHGKVERWLEELWTWMVRFK--------------DAVFAI---ALEPGLVG 157 (201)
Q Consensus 98 ~VvK~aI~~~t~lyr---~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK--------------~~Il~~---~~~s~n~G 157 (201)
.|+=.|+.....+-. .++.++..++- .+.. ..-|..+.-++ .+++.+ .+.+.|+.
T Consensus 191 ~V~~~Al~lL~ei~~~d~~a~~kLv~~l~-~~~l----~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~a 265 (355)
T 3tjz_B 191 MVQYHALGLLYHVRKNDRLAVSKMISKFT-RHGL----KSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEM 265 (355)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-SSCC----SCHHHHHHHHHHHTCC-----------------CCCCCSSHH
T ss_pred cHHHHHHHHHHHHHhhchHHHHHHHHHHh-cCCC----cChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChH
Confidence 999888887777664 67766654332 2221 12344443333 334442 23466777
Q ss_pred hhHHHHHhh
Q 028959 158 TKLLALKFL 166 (201)
Q Consensus 158 Vr~~aiKF~ 166 (201)
|-.-|+|-+
T Consensus 266 VvyEa~k~I 274 (355)
T 3tjz_B 266 VVYEAASAI 274 (355)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
No 25
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.84 E-value=0.059 Score=39.71 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=23.6
Q ss_pred HhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 51 LVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 51 il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
+++.-.|++..||...+.-++.++. +..++.|..+|+|+++.|-..++.+.+.+
T Consensus 47 L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 47 LLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3333334444444444444444432 12344444444444444444444444443
No 26
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.79 E-value=0.047 Score=46.89 Aligned_cols=115 Identities=18% Similarity=0.115 Sum_probs=74.9
Q ss_pred hHHhhhHHHhhhccCc--chhHHHHHHHHHHHHhhch-----hhhhhhHHHHHHHhhccC--ChhHHHHHHhhhhhhhHH
Q 028959 43 LAAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDG--DSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 43 ll~~fl~~il~f~~d~--~~~VRk~v~~fiee~c~~~-----~el~~~~v~~L~~LL~D~--~~~VvK~aI~~~t~lyr~ 113 (201)
-.+++++.+++...++ +..+|...+..++.+|... ..+.+.+++.+..+|.|+ ++.|-+.++.|.+++..
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~- 203 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE- 203 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT-
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-
Confidence 4577888888777676 8899999999999998753 456778889999999988 78888888888776531
Q ss_pred HHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhhhc
Q 028959 114 VLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLF 173 (201)
Q Consensus 114 ~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~q 173 (201)
++.. ....|.....+-..+.. ...+.+..+|..+++.+..++-.+
T Consensus 204 --------~~~~------~~~~~~~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 204 --------FTKA------NFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp --------TTHH------HHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred --------HHHH------hhhhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 1100 00112111112222333 345666778887777776665433
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.73 E-value=0.11 Score=40.68 Aligned_cols=102 Identities=21% Similarity=0.154 Sum_probs=72.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCch-----HHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh---
Q 028959 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSL-----AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS--- 81 (201)
Q Consensus 10 ~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~l-----l~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~--- 81 (201)
+..|-+....++...+...+..+..+..+ ++.. -...++.++++-.+++.++|...+..|..+|..+++..
T Consensus 130 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 208 (252)
T 4hxt_A 130 VEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAI 208 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444444456666777777777777654 2221 14477888888888888899999999998887665443
Q ss_pred --hhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 82 --SILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 82 --~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
..+++.|..+++++++.|.+.|..+..+|..
T Consensus 209 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 209 VDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 3467888888888888888888888877754
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.65 E-value=0.088 Score=45.23 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=73.6
Q ss_pred cCCChHHHHHHHHHHHHhhc-cCCCc---hHH--hhhHHHhhhccCc-chhHHHHHHHHHHHHhhchhhhh-----hhHH
Q 028959 18 NHGDLAVKLSSLKQVRGILS-SADPS---LAA--ELFPYLVELQSSP-ESLVRKSLIETIEDIGLKAMEHS-----SILM 85 (201)
Q Consensus 18 ~~~d~~~Kl~~L~q~~elll-~~dp~---ll~--~fl~~il~f~~d~-~~~VRk~v~~fiee~c~~~~el~-----~~~v 85 (201)
.++|...+...+..+++++. +.+|. .+. .+++.++++-.+. +..+|...+..+..++..+++.. ..++
T Consensus 30 ~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 109 (450)
T 2jdq_A 30 FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAV 109 (450)
T ss_dssp HSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH
Confidence 35677789999999999875 23443 232 6888888776666 89999999999999998554332 4689
Q ss_pred HHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 86 PVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 86 ~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
|.|..+|.++++.|...++.+.++|-
T Consensus 110 ~~L~~lL~~~~~~vr~~a~~~L~~l~ 135 (450)
T 2jdq_A 110 PIFIELLSSEFEDVQEQAVWALGNIA 135 (450)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999988877764
No 29
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.63 E-value=0.57 Score=46.41 Aligned_cols=164 Identities=10% Similarity=0.097 Sum_probs=103.1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc---------hHHhhhHHHhhhcc-CcchhHHHHHHHHHHHHhhc
Q 028959 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS---------LAAELFPYLVELQS-SPESLVRKSLIETIEDIGLK 76 (201)
Q Consensus 7 ~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~---------ll~~fl~~il~f~~-d~~~~VRk~v~~fiee~c~~ 76 (201)
+.+++.|-.+-...+...+-.....+.++.-.-.+. ..++++|.++.... +++..+|....+.+.+.|..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 455555555544434334555555555555433333 57888888887666 47889999999999998863
Q ss_pred h----hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHH--------HHHHHhhhhhccC---cchhhHHHHHHHHHH
Q 028959 77 A----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR--------VLEEITMQFRWHG---KVERWLEELWTWMVR 141 (201)
Q Consensus 77 ~----~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~--------~L~~~~~q~i~~~---~~~~~~~~~W~~m~~ 141 (201)
. ..+.+.+++.|...|.|+++.|-++|+.|.+.+... .+..+. +.+... ..-...-.+|..+..
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~-~~L~~~~~~~~r~~a~~~l~~l~~ 243 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL-SELSKNDSMSTTRTYIQCIAAISR 243 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHH-HHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHH
Confidence 3 246788999999999999999999998887765321 222221 222221 111234555655543
Q ss_pred ------------hHHHHHHHhccCCCCchhHHHHHhhhHhhhh
Q 028959 142 ------------FKDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (201)
Q Consensus 142 ------------lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL~ 172 (201)
+-..+++ .+.+.++.||-.|+.+++.++-.
T Consensus 244 ~~~~~~~~~l~~l~~~ll~-~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 244 QAGHRIGEYLEKIIPLVVK-FCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HSSGGGTTSCTTHHHHHHH-HHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHH
Confidence 2334444 34567889999999998887654
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.55 E-value=0.24 Score=44.36 Aligned_cols=94 Identities=22% Similarity=0.319 Sum_probs=74.6
Q ss_pred cCCChHHHHHHHHHHHHhhccC-CCc---hH-HhhhHHHhhhccCc-chhHHHHHHHHHHHHhhchhhhh-----hhHHH
Q 028959 18 NHGDLAVKLSSLKQVRGILSSA-DPS---LA-AELFPYLVELQSSP-ESLVRKSLIETIEDIGLKAMEHS-----SILMP 86 (201)
Q Consensus 18 ~~~d~~~Kl~~L~q~~elll~~-dp~---ll-~~fl~~il~f~~d~-~~~VRk~v~~fiee~c~~~~el~-----~~~v~ 86 (201)
..+|...+...+..+++++-.. +|. +. ...++.++++..++ +..+|...+..|..++...++.. ..+++
T Consensus 97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~ 176 (530)
T 1wa5_B 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVP 176 (530)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHH
Confidence 3467778899999999998653 342 11 46788899888776 89999999999999998654333 45689
Q ss_pred HHHHhhccCChhHHHHHHhhhhhhh
Q 028959 87 VLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 87 ~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
.|..+|.++++.|...|+.+..+|-
T Consensus 177 ~Lv~lL~~~~~~vr~~A~~aL~~l~ 201 (530)
T 1wa5_B 177 LFIQLLYTGSVEVKEQAIWALGNVA 201 (530)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999888875
No 31
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.52 E-value=0.7 Score=45.79 Aligned_cols=104 Identities=10% Similarity=0.089 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccC----CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-hhh
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSA----DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEH 80 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~----dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-~el 80 (201)
...+..+|.... ++|.+.|...+.++.+.+... ++...+.+++.+++...|++..||+..+.-|..++..- ++.
T Consensus 5 ~~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ 83 (1230)
T ss_dssp CHHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HhHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 345667777744 477778998888888877432 34457788999998778999999999999998887644 457
Q ss_pred hhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 81 ~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
...+++.|...|.|+++.|-..+..+.+.+
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i 113 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTV 113 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 788999999999999888855555544433
No 32
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.48 E-value=0.26 Score=40.09 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=60.7
Q ss_pred CCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChh
Q 028959 19 HGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSG 98 (201)
Q Consensus 19 ~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~ 98 (201)
.+|...+......+.++-. .+|..-+.+++.++....|++..||...+.-++.++. +.+++.|..+|.|+++.
T Consensus 102 d~~~~vr~~a~~aL~~l~~-~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~ 174 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCK-KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------KATIPLLINLLKDPNGD 174 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHH
T ss_pred CCCHHHHHHHHHHHHHHhc-cCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHH
Confidence 3444455555555544432 2444566788888888889999999999998887764 34778888899999999
Q ss_pred HHHHHHhhhhhh
Q 028959 99 VAGKSIVCGTNF 110 (201)
Q Consensus 99 VvK~aI~~~t~l 110 (201)
|-..++.+...+
T Consensus 175 vr~~a~~aL~~~ 186 (280)
T 1oyz_A 175 VRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 988888888777
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.45 E-value=0.052 Score=50.70 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=34.2
Q ss_pred CcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHH
Q 028959 57 SPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 57 d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
|++..+|..-+.++..++ .++++..+++.+..+|+|.+|.|=|.|+.|...+|+.
T Consensus 118 ~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 118 HSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK 172 (618)
T ss_dssp CSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 444445555555555444 2455666667777777777777777777777777764
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.43 E-value=0.5 Score=42.10 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=74.0
Q ss_pred cCCChHHHHHHHHHHHHhhccCC-Cc----hHHhhhHHHhhhccCcc-hhHHHHHHHHHHHHhhchhhhhh-----hHHH
Q 028959 18 NHGDLAVKLSSLKQVRGILSSAD-PS----LAAELFPYLVELQSSPE-SLVRKSLIETIEDIGLKAMEHSS-----ILMP 86 (201)
Q Consensus 18 ~~~d~~~Kl~~L~q~~elll~~d-p~----ll~~fl~~il~f~~d~~-~~VRk~v~~fiee~c~~~~el~~-----~~v~ 86 (201)
..+|...+...+..++.++.... |. .-...+|.++++-.+++ ..+|...+..|..+|...++... .++|
T Consensus 84 ~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~ 163 (528)
T 4b8j_A 84 YSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 163 (528)
T ss_dssp TSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHH
Confidence 45677789999999999886543 32 22467888888877766 89999999999999986544322 4889
Q ss_pred HHHHhhccCChhHHHHHHhhhhhhh
Q 028959 87 VLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 87 ~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
.|..+|.++++.|...++.+..+|-
T Consensus 164 ~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 164 IFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999888884
No 35
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.40 E-value=0.69 Score=43.08 Aligned_cols=151 Identities=14% Similarity=0.115 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc----hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhc------
Q 028959 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK------ 76 (201)
Q Consensus 7 ~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~----ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~------ 76 (201)
+.++..+.+.....+-..|-..+..+..+.-+..|. +++.+++.++....|++..||...+..++..|..
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 345556666555566666666677666666332322 5567777778777899999999888877777653
Q ss_pred hhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCC-C
Q 028959 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPG-L 155 (201)
Q Consensus 77 ~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~-n 155 (201)
..+++..+++.|...|.|+ +.|...+..+..++....= . .......+..+..+..+ +..+-+.+ +
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~-----~-~~~~~l~~~~~~il~~L-------~~~l~~~d~~ 513 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLA-----E-ATPSPIYNFYPALVDGL-------IGAANRIDNE 513 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHS-----S-SSSCGGGGGHHHHHHHH-------HHHHTCSCCG
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcc-----c-ccchhhHHHHHHHHHHH-------HHHHhCcCcc
Confidence 2568899999999999886 7666655555444432110 0 00011333445554443 33221222 2
Q ss_pred CchhHHHHHhhhHhhh
Q 028959 156 VGTKLLALKFLETHVL 171 (201)
Q Consensus 156 ~GVr~~aiKF~E~vIL 171 (201)
..||..+++.+..++-
T Consensus 514 ~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 514 FNARASAFSALTTMVE 529 (861)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5778777777766653
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.32 E-value=0.24 Score=38.23 Aligned_cols=139 Identities=16% Similarity=0.125 Sum_probs=94.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhccCCCchH-----HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh-----h
Q 028959 13 LAAANNHGDLAVKLSSLKQVRGILSSADPSLA-----AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----S 82 (201)
Q Consensus 13 Ln~A~~~~d~~~Kl~~L~q~~elll~~dp~ll-----~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~-----~ 82 (201)
|-+....++...+...+..+..+..+ ++... ...++.++.+-.+++..+|+..+.-|..+|..+++.. .
T Consensus 59 L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (210)
T 4db6_A 59 LVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 33333445666777777777777643 33221 3467888999899999999999999999998665443 4
Q ss_pred hHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHH
Q 028959 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLA 162 (201)
Q Consensus 83 ~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~a 162 (201)
.+++.|..+|+++++.|.+.+..+..++-.. ++ +......+ ...-..+.. ++.+++..||-.|
T Consensus 138 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~------------~~--~~~~~~~~--~g~i~~L~~-ll~~~~~~v~~~a 200 (210)
T 4db6_A 138 GALPALVQLLSSPNEQILQEALWALSNIASG------------GN--EQKQAVKE--AGALEKLEQ-LQSHENEKIQKEA 200 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTS------------CH--HHHHHHHH--TTHHHHHHH-GGGCSCHHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC------------Cc--HHHHHHHH--CCCHHHHHH-HHhCCCHHHHHHH
Confidence 5789999999999999999998887776421 00 00111111 022334555 6678888999999
Q ss_pred HHhhhHh
Q 028959 163 LKFLETH 169 (201)
Q Consensus 163 iKF~E~v 169 (201)
...+..+
T Consensus 201 ~~aL~~l 207 (210)
T 4db6_A 201 QEALEKL 207 (210)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887754
No 37
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.97 E-value=0.21 Score=39.62 Aligned_cols=140 Identities=16% Similarity=0.132 Sum_probs=89.1
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCCCc---hH-HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh-----h
Q 028959 12 LLAAANNHGDLAVKLSSLKQVRGILSSADPS---LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----S 82 (201)
Q Consensus 12 lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~---ll-~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~-----~ 82 (201)
.|-+....++...+...+..+..+..+.+.. +. ...++.++.+-.+++..+|+..+..+..+|...++.. .
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 179 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 179 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence 3333334456566777777777766442211 12 3478888888888899999999999999998654432 4
Q ss_pred hHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHH
Q 028959 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLA 162 (201)
Q Consensus 83 ~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~a 162 (201)
.+++.|..+|.++++.|.+.+..+..+|-.. ++ +.....-+. ..-..++. ++.+++..+|..|
T Consensus 180 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~------------~~--~~~~~~~~~--g~i~~L~~-ll~~~~~~v~~~A 242 (252)
T 4db8_A 180 GALPALVQLLSSPNEQILQEALWALSNIASG------------GN--EQKQAVKEA--GALEKLEQ-LQSHENEKIQKEA 242 (252)
T ss_dssp TCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS------------CH--HHHHHHHHT--THHHHHHT-TTTCSSSHHHHTH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC------------CH--HHHHHHHHC--CcHHHHHH-HhCCCCHHHHHHH
Confidence 5788999999999999999888887777420 00 000000000 12234555 5567788888888
Q ss_pred HHhhhH
Q 028959 163 LKFLET 168 (201)
Q Consensus 163 iKF~E~ 168 (201)
...+..
T Consensus 243 ~~~L~~ 248 (252)
T 4db8_A 243 QEALEK 248 (252)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 766543
No 38
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.93 E-value=0.18 Score=40.04 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=77.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCch----H-HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh---
Q 028959 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSL----A-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS--- 81 (201)
Q Consensus 10 ~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~l----l-~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~--- 81 (201)
+..|-+....++...+...+..+..+..+ ++.. . ...++.++++..+++..+|+..+..|..+|..+++..
T Consensus 140 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 218 (252)
T 4db8_A 140 LPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 218 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34444444456767788888888888754 3321 1 5678889998888999999999999999997665432
Q ss_pred --hhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 82 --SILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 82 --~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
..+++.|..+|.++++.|.+.|..+..+|.+
T Consensus 219 ~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 219 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 3478889999999999999999988887753
No 39
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.82 E-value=0.25 Score=46.14 Aligned_cols=104 Identities=20% Similarity=0.208 Sum_probs=76.2
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc----hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhc------h
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK------A 77 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~----ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~------~ 77 (201)
.++..+.+.-..++-..|-..+..+..+.-+-.|. +++++++.++..-.|++..||...+.-++..|.. .
T Consensus 366 ~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhccc
Confidence 45556666555566667777888777776443333 4567777777777899999999999988888875 3
Q ss_pred hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 78 MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 78 ~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
..++..+++.|...|.|+ +.|...+..+..++..
T Consensus 446 ~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 446 DVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp TTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 478899999999999885 7776666666555543
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.76 E-value=0.23 Score=47.31 Aligned_cols=104 Identities=22% Similarity=0.163 Sum_probs=79.1
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCC---chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhc-----hhh
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADP---SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-----AME 79 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp---~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~-----~~e 79 (201)
.++..+.+.-..++-..|-..+..+..+.-+-.. .+++++++.++..-.|++..||+..+.-++..|.- ...
T Consensus 359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 438 (852)
T 4fdd_A 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT 438 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH
Confidence 4555666555556666777777777776643211 26788899999988999999999888888877762 356
Q ss_pred hhhhHHHHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 80 HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 80 l~~~~v~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
+...+++.|...|.|+++.|.+.+..+..++-
T Consensus 439 ~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 439 YLKPLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 78899999999999999999998888776654
No 41
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.61 E-value=0.59 Score=43.54 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=55.5
Q ss_pred hHHhhhHHHhhhccCc-chhHHHHHHHHHHHHhhch-------hhhhhhHHHHHHHhhccC--ChhHHHHHHhhhhhh
Q 028959 43 LAAELFPYLVELQSSP-ESLVRKSLIETIEDIGLKA-------MEHSSILMPVLLAFLRDG--DSGVAGKSIVCGTNF 110 (201)
Q Consensus 43 ll~~fl~~il~f~~d~-~~~VRk~v~~fiee~c~~~-------~el~~~~v~~L~~LL~D~--~~~VvK~aI~~~t~l 110 (201)
-.+++++.+++...++ +..+|...+..+..+|... ..+...+++.+...+.|+ ++.|-+.++.|..++
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~ 208 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADS 208 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 5688999999887777 8899999999999888742 346788888888899987 788888888887664
No 42
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.59 E-value=0.19 Score=47.00 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=72.1
Q ss_pred hHHhhhHHHhhhccCc--chhHHHHHHHHHHHHhhch-----hhhhhhHHHHHHHhhccC--ChhHHHHHHhhhhhhhHH
Q 028959 43 LAAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDG--DSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 43 ll~~fl~~il~f~~d~--~~~VRk~v~~fiee~c~~~-----~el~~~~v~~L~~LL~D~--~~~VvK~aI~~~t~lyr~ 113 (201)
-.+++++.+++...++ +..+|+-.+..+..+|... ..+++.+++.+...+.|+ ++.|-+.++.|.+++...
T Consensus 125 ~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567777777777777 8889999999998888742 467788888888889887 677877788777765431
Q ss_pred HHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhhh
Q 028959 114 VLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVL 171 (201)
Q Consensus 114 ~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vIL 171 (201)
+..+ .. ...|.. .+-..+.. ...+.++.+|..|++++..++-
T Consensus 205 ---------~~~~-~~---~~~~~~--~il~~l~~-~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 205 ---------TKAN-FD---KESERH--FIMQVVCE-ATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp ---------CHHH-HT---SHHHHH--HHHHHHHH-HTTCSSHHHHHHHHHHHHHHHH
T ss_pred ---------HHHH-HH---hHHHHH--HHHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence 0000 00 011211 12222233 3345566788888877776553
No 43
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=94.38 E-value=1.6 Score=38.84 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=69.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc---hH-HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh----
Q 028959 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPS---LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS---- 81 (201)
Q Consensus 10 ~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~---ll-~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~---- 81 (201)
+..|-.....+|...+...+..+..+..+.+.. ++ ...++.++.+..+++..||...+..|..+|...++..
T Consensus 246 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 325 (528)
T 4b8j_A 246 LPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCII 325 (528)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444444566667777777777766432111 11 2567788888888888899999998888887543222
Q ss_pred -hhHHHHHHHhhccC-ChhHHHHHHhhhhhhh
Q 028959 82 -SILMPVLLAFLRDG-DSGVAGKSIVCGTNFF 111 (201)
Q Consensus 82 -~~~v~~L~~LL~D~-~~~VvK~aI~~~t~ly 111 (201)
..+++.|..+|.++ ++.|.+.|..+..+|-
T Consensus 326 ~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 326 DHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 45678888888888 8888888888777764
No 44
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.89 E-value=0.65 Score=41.98 Aligned_cols=93 Identities=16% Similarity=0.243 Sum_probs=72.2
Q ss_pred cCCChHHHHHHHHHHHHhhccCCCchHH-----hhhHHHhhhc-cCcchhHHHHHHHHHHHHhhchhhhh-----hhHHH
Q 028959 18 NHGDLAVKLSSLKQVRGILSSADPSLAA-----ELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAMEHS-----SILMP 86 (201)
Q Consensus 18 ~~~d~~~Kl~~L~q~~elll~~dp~ll~-----~fl~~il~f~-~d~~~~VRk~v~~fiee~c~~~~el~-----~~~v~ 86 (201)
.+.|...++..+..+|.++-......++ ..+|.++++- .+.+++++...+.-|..++...++.. .-++|
T Consensus 86 ~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip 165 (529)
T 3tpo_A 86 NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIP 165 (529)
T ss_dssp TSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 4578889999999999998543222333 4567788766 56778899999999999887654432 23689
Q ss_pred HHHHhhccCChhHHHHHHhhhhhh
Q 028959 87 VLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 87 ~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
.|..||.++++.|...|+.+..+|
T Consensus 166 ~Lv~LL~s~~~~v~e~A~~aL~nL 189 (529)
T 3tpo_A 166 AFISLLASPHAHISEQAVWALGNI 189 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988877
No 45
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.76 E-value=1.1 Score=39.87 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=74.3
Q ss_pred CCChHHHHH-HHHHHHHhhccCCC--c-hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh-------------------
Q 028959 19 HGDLAVKLS-SLKQVRGILSSADP--S-LAAELFPYLVELQSSPESLVRKSLIETIEDIGL------------------- 75 (201)
Q Consensus 19 ~~d~~~Kl~-~L~q~~elll~~dp--~-ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~------------------- 75 (201)
.+..+.|+. .++++=-++..-++ . ....+|..++.+-..++.++||.+-=++++..+
T Consensus 37 ~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~ 116 (355)
T 3tjz_B 37 TPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGK 116 (355)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSS
T ss_pred CCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC
Confidence 333446655 67777766655332 2 346788888988888999999998877776655
Q ss_pred ---------------chhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHH
Q 028959 76 ---------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLE 116 (201)
Q Consensus 76 ---------------~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~ 116 (201)
.+++++..+.+.+...|.|.+|.|-|.|+.|+..||+..=+
T Consensus 117 N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe 172 (355)
T 3tjz_B 117 EDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD 172 (355)
T ss_dssp CHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH
T ss_pred cHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH
Confidence 33677888888888889999999999999999999887654
No 46
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.72 E-value=2.4 Score=36.13 Aligned_cols=151 Identities=13% Similarity=0.005 Sum_probs=100.2
Q ss_pred ChHHHHHHHHHHHHhhccCCCc--hH-HhhhHHHhh-hccCcchhHHHHHHHHHHHHhhchhhh---h--hhHHHHHHHh
Q 028959 21 DLAVKLSSLKQVRGILSSADPS--LA-AELFPYLVE-LQSSPESLVRKSLIETIEDIGLKAMEH---S--SILMPVLLAF 91 (201)
Q Consensus 21 d~~~Kl~~L~q~~elll~~dp~--ll-~~fl~~il~-f~~d~~~~VRk~v~~fiee~c~~~~el---~--~~~v~~L~~L 91 (201)
+.+.|+..|..+.+++-+.|-. +. -.-++.++. +..+++.+||.+.+.-|+.++..+++. + ...+|.|..|
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3458899999998888543311 11 234678888 888899999999999999998866533 2 2588999999
Q ss_pred hcc-CChhHHHHHHhhhhhhhH---HHHHHH--------hhhhhccCcchhhHHHHHHHHHH------hHH---------
Q 028959 92 LRD-GDSGVAGKSIVCGTNFFC---RVLEEI--------TMQFRWHGKVERWLEELWTWMVR------FKD--------- 144 (201)
Q Consensus 92 L~D-~~~~VvK~aI~~~t~lyr---~~L~~~--------~~q~i~~~~~~~~~~~~W~~m~~------lK~--------- 144 (201)
|+. .++.|.+.|+-+.++|-+ ...+.+ ..+.+.++...-..+.+|---.- .+.
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 984 589999999999888853 211111 11222333333345566643221 122
Q ss_pred HHHHHhccCCCCchhHHHHHhhhHhhhh
Q 028959 145 AVFAIALEPGLVGTKLLALKFLETHVLL 172 (201)
Q Consensus 145 ~Il~~~~~s~n~GVr~~aiKF~E~vIL~ 172 (201)
.++. ++.+.+..|+..|+..+..++-.
T Consensus 213 ~Lv~-LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVA-LVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHH-HHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHH-HHcCCChhHHHHHHHHHHHHHhC
Confidence 2344 56778899999999988877644
No 47
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=93.60 E-value=0.65 Score=41.52 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHHHHhhccCCCc----hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh-----hhHHHHHHH
Q 028959 20 GDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLA 90 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll~~dp~----ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~-----~~~v~~L~~ 90 (201)
++...+...+..+..+..+.+|. .....++.++.+..+.+..||...+..|..++...++.. ..+++.|..
T Consensus 227 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~ 306 (530)
T 1wa5_B 227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE 306 (530)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH
Confidence 56667777888888888665343 456788899998888999999999999999987654322 267899999
Q ss_pred hhccCChhHHHHHHhhhhhhh
Q 028959 91 FLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 91 LL~D~~~~VvK~aI~~~t~ly 111 (201)
+|.++++.|...++.+..+|-
T Consensus 307 lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 307 LLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHT
T ss_pred HHCCCChhhHHHHHHHHHHHH
Confidence 999999999999988887774
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=93.54 E-value=0.22 Score=46.80 Aligned_cols=127 Identities=15% Similarity=-0.001 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHHHHhhc-cCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhc----------------------
Q 028959 20 GDLAVKLSSLKQVRGILS-SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK---------------------- 76 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll-~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~---------------------- 76 (201)
.|..+|.+.+.++-=+.. +.|.+ .++.+++.+..+++..+||-+-=+++..+..
T Consensus 50 ~~~~~k~~~l~Kli~l~~~G~d~s---~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ 126 (621)
T 2vgl_A 50 LDGYSKKKYVCKLLFIFLLGHDID---FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPT 126 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCCCC---SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCc---hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHH
Confidence 355667777766554443 43443 3466666666667777777665444444332
Q ss_pred -------------hhhhhhhHHHHHHHhh--ccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHH
Q 028959 77 -------------AMEHSSILMPVLLAFL--RDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVR 141 (201)
Q Consensus 77 -------------~~el~~~~v~~L~~LL--~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~ 141 (201)
.++++..+++.+..+| .|.+|.|=|+|+.|...+|+..= . .... + .
T Consensus 127 ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-----~-~~~~--~-----------~ 187 (621)
T 2vgl_A 127 FMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-----D-LVPM--G-----------D 187 (621)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-----G-GCCC--C-----------S
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-----h-hcCc--h-----------h
Confidence 2566666777777777 77788888888888888887311 0 0100 0 2
Q ss_pred hHHHHHHHhccCCCCchhHHHHHhhhHh
Q 028959 142 FKDAVFAIALEPGLVGTKLLALKFLETH 169 (201)
Q Consensus 142 lK~~Il~~~~~s~n~GVr~~aiKF~E~v 169 (201)
+-+.+.. ++++.+.||+.+|+..+..+
T Consensus 188 ~~~~l~~-lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 188 WTSRVVH-LLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp CHHHHHH-HTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCCCccHHHHHHHHHHHH
Confidence 2344445 55666678888887765443
No 49
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.51 E-value=0.12 Score=38.02 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=27.1
Q ss_pred hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 43 ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
..+.+.+.++++-.|++..+|...+.-+.+.+.. .++.|..+|+|+++.|-..++.+.+++
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-------~~~~L~~~L~d~~~~vR~~A~~aL~~~ 69 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE-------AFEPLLESLSNEDWRIRGAAAWIIGNF 69 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSST-------THHHHHHGGGCSCHHHHHHHHHHHGGG
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-------HHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 3445555555555566666665555555443322 135555666666666666666665555
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.34 E-value=0.99 Score=40.70 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=72.3
Q ss_pred cCCChHHHHHHHHHHHHhhccC-CCchHHh-----hhHHHhhhc-cCcchhHHHHHHHHHHHHhhchhhhhh-----hHH
Q 028959 18 NHGDLAVKLSSLKQVRGILSSA-DPSLAAE-----LFPYLVELQ-SSPESLVRKSLIETIEDIGLKAMEHSS-----ILM 85 (201)
Q Consensus 18 ~~~d~~~Kl~~L~q~~elll~~-dp~ll~~-----fl~~il~f~-~d~~~~VRk~v~~fiee~c~~~~el~~-----~~v 85 (201)
.+.|...+++...++|.++-.. +| .+++ .+|.+++|- .+.+++++...+.-|..++...++... -++
T Consensus 67 ~s~d~~~q~~a~~~~rklls~e~~p-pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaI 145 (510)
T 3ul1_B 67 NSNNLESQLQATQAARKLLSREKQP-PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 145 (510)
T ss_dssp TSSCHHHHHHHHHHHHHHHTCSSCC-CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCc-hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCH
Confidence 4588889999999999998542 33 3333 577888865 566788999999999988875544432 368
Q ss_pred HHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 86 PVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 86 ~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
|.|..+|.++++.|..+|+.+..+|-
T Consensus 146 p~Lv~lL~s~~~~v~e~A~~aL~nLa 171 (510)
T 3ul1_B 146 PAFISLLASPHAHISEQAVWALGNIA 171 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988873
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=92.87 E-value=0.45 Score=42.99 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=81.8
Q ss_pred HhhhHHHhhhccCcchhHHHHHHHHHHHHhhc-hhhhh-----hhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHH
Q 028959 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHS-----SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEI 118 (201)
Q Consensus 45 ~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~-~~el~-----~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~ 118 (201)
..+++.++.+-.+.+.++|+..+..|..++.. +++.+ ..+++.|..||+..|+.|++.++.+..+|.+..=
T Consensus 357 ~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~--- 433 (510)
T 3ul1_B 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE--- 433 (510)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH---
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH---
Confidence 35778888888899999999999999877663 33333 3468899999999999999999998888876442
Q ss_pred hhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhhHhh
Q 028959 119 TMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (201)
Q Consensus 119 ~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E~vI 170 (201)
+- +. +......-+....+ +.|-. +..++|+-|+-.|.+.+|++-
T Consensus 434 --~~---~~-~~~~~~~iee~ggl-~~ie~-Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 434 --KL---GE-TEKLSIMIEECGGL-DKIEA-LQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp --TT---TC-HHHHHHHHHHTTHH-HHHHH-GGGCSSHHHHHHHHHHHHHHC
T ss_pred --hc---cc-hHHHHHHHHHcCcH-HHHHH-HHcCCCHHHHHHHHHHHHHHC
Confidence 11 11 11112222222222 34555 678999999999999999983
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.66 E-value=0.68 Score=39.55 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=60.4
Q ss_pred chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-----hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHH
Q 028959 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (201)
Q Consensus 42 ~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-----~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~ 114 (201)
..++.+++.+.+...|++..+|...+..++.++... ..+++.++|.|..+|+|+++.|-+.|..+.+++....
T Consensus 362 ~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 566778887777778899999999999999888643 2467899999999999999999999998888776543
No 53
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=92.65 E-value=0.53 Score=42.59 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCChHHHHHHHHHHHHhhccCCCc----hH-HhhhHHHhhhccCcchhHHHHHHHHHHHHhhc-hhhhhh-----hHHHH
Q 028959 19 HGDLAVKLSSLKQVRGILSSADPS----LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHSS-----ILMPV 87 (201)
Q Consensus 19 ~~d~~~Kl~~L~q~~elll~~dp~----ll-~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~-~~el~~-----~~v~~ 87 (201)
+++...|......+..+.-+ ++. +. ..+++.++.+-.+.+.++|+..+..|..++.. +++.+. .+++.
T Consensus 346 ~~~~~i~~~a~~aL~nl~~~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~ 424 (529)
T 3tpo_A 346 NPKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEP 424 (529)
T ss_dssp CSSHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHhcc-cHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHH
Confidence 34444555555555555533 222 11 35778888888888999999999988877653 344332 36888
Q ss_pred HHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHHHHhhh
Q 028959 88 LLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLE 167 (201)
Q Consensus 88 L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~aiKF~E 167 (201)
|..||+..|+.|+..+..+..+|.+..= +. +. .......-+.... -+.|-. +.+++|+-|+-.|.+.+|
T Consensus 425 L~~LL~~~d~~i~~~~L~aL~nil~~~~-----~~---~~-~~~~~~~iee~gg-l~~ie~-Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 425 LMNLLSAKDTKIIQVILDAISNIFQAAE-----KL---GE-TEKLSIMIEECGG-LDKIEA-LQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHH-----TT---TC-HHHHHHHHHHTTC-HHHHTG-GGGCSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhH-----hc---cC-hHHHHHHHHHCCc-HHHHHH-HHcCCCHHHHHHHHHHHH
Confidence 9999999999999988888887765432 10 11 1111122222222 234555 668999999999999999
Q ss_pred Hh
Q 028959 168 TH 169 (201)
Q Consensus 168 ~v 169 (201)
++
T Consensus 494 ~y 495 (529)
T 3tpo_A 494 KY 495 (529)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 54
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=91.08 E-value=1.6 Score=37.29 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=74.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc---hH-HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh---
Q 028959 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS---LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS--- 81 (201)
Q Consensus 9 v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~---ll-~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~--- 81 (201)
++.+|+. .++...+...+..+-.+.-+..|. +. .+.++.++.+-.+++..||+..+..|..+|..+++..
T Consensus 129 Ll~LL~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~v 205 (296)
T 1xqr_A 129 LLRLLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 205 (296)
T ss_dssp HHHHHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 3445543 234556777777777777553331 33 3678888888888899999999999999887665432
Q ss_pred --hhHHHHHHHhhccCChhHHHHHHhhhhhhhHH
Q 028959 82 --SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 82 --~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
..+++.|..||..+++.|...+..+..+|...
T Consensus 206 v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 34778999999999999999999988887654
No 55
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.82 E-value=2.5 Score=42.44 Aligned_cols=96 Identities=18% Similarity=0.106 Sum_probs=68.8
Q ss_pred HHHH-HHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhh-hccCcchhHHHHHHHHHHHHhhchhhhhhhHH
Q 028959 8 QALS-LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVE-LQSSPESLVRKSLIETIEDIGLKAMEHSSILM 85 (201)
Q Consensus 8 ~v~~-lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~-f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v 85 (201)
.+++ ||+-+....+...+-...-.+-.+... +| +-.+.+++ +..+.++.||+-++-=++.+|...+. ++++
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g-~~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~~ai 649 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR-DY----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--QSAI 649 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS-SC----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--HHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhccC-CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--HHHH
Confidence 3444 777777664443443333333333333 55 34566665 55788999999999999999987774 8899
Q ss_pred HHHHHhhccCChhHHHHHHhhhhhh
Q 028959 86 PVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 86 ~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
+.|..|+.|.|..|-+.||.+.+-+
T Consensus 650 d~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 650 DVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999877654
No 56
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=88.26 E-value=4.8 Score=35.69 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc----hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhh
Q 028959 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS 82 (201)
Q Consensus 7 ~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~----ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~ 82 (201)
+.++.+|+. +|...|......++.+..+.++. .-...+|.++++-.+++..+++..+.-+..++...++.-.
T Consensus 5 ~~lv~~L~s----~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 5 PKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp HHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 456677764 45568999999999988654442 2256789999988889999999999999988876443322
Q ss_pred -----hHHHHHHHhhc-cCChhHHHHHHhhhhhh
Q 028959 83 -----ILMPVLLAFLR-DGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 83 -----~~v~~L~~LL~-D~~~~VvK~aI~~~t~l 110 (201)
-.+|.|..+|+ ++++.|.+.+.-+..+|
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nL 114 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL 114 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 34889999999 77888888887666554
No 57
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=87.98 E-value=2.3 Score=36.52 Aligned_cols=73 Identities=11% Similarity=0.108 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccC-CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch
Q 028959 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (201)
Q Consensus 5 ~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~-dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~ 77 (201)
...+++++|++--.+.|...|.--|+-+-|+.-.. ||+.+.+.++||=+|-...++.++++..+-++++..+.
T Consensus 147 ~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 147 DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 35688888888887799999999999999988654 89999999999999988889999999999999998875
No 58
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=87.79 E-value=5.2 Score=32.81 Aligned_cols=73 Identities=5% Similarity=0.033 Sum_probs=56.9
Q ss_pred chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-------hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHH
Q 028959 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-------MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (201)
Q Consensus 42 ~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-------~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~ 114 (201)
...+.+++.+++.-...++.+|-..+.||.++-... ...++.+++.+..+|.|.|+.|=..|+.+...+|+.+
T Consensus 135 ~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 135 TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 345677888888888899999988777777665432 1245667888889999999999999999999999743
No 59
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=87.59 E-value=5.4 Score=33.56 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=72.0
Q ss_pred CCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChh
Q 028959 19 HGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSG 98 (201)
Q Consensus 19 ~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~ 98 (201)
++|...|+..|+=.--+= ..+|.+..-|||.++.+-+|++--||-..++-++.++.+.|. +-+++.....=++|.+.-
T Consensus 155 skd~~Dkl~aLnFi~alG-en~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~l 232 (253)
T 2db0_A 155 SKNREDKLTALNFIEAMG-ENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSL 232 (253)
T ss_dssp CSSHHHHHHHHHHHHTCC-TTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHH
T ss_pred CCChHHHHHHHHHHHHHh-ccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHH
Confidence 577778999888665443 337889999999999999999999999999999999999999 666666666677888888
Q ss_pred HHHHHHhhhh
Q 028959 99 VAGKSIVCGT 108 (201)
Q Consensus 99 VvK~aI~~~t 108 (201)
|.|.+....+
T Consensus 233 v~~~V~egL~ 242 (253)
T 2db0_A 233 VNKTVKEGIS 242 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765543
No 60
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=86.51 E-value=2.9 Score=35.75 Aligned_cols=89 Identities=15% Similarity=0.180 Sum_probs=57.1
Q ss_pred HHHHHHHHhhccCCCch----HHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch---------------------hhh-
Q 028959 27 SSLKQVRGILSSADPSL----AAELFPYLVELQSSPESLVRKSLIETIEDIGLKA---------------------MEH- 80 (201)
Q Consensus 27 ~~L~q~~elll~~dp~l----l~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~---------------------~el- 80 (201)
+.|..+-+.+...++.+ ...|+|.+++=..|+...||..+-+.+..++.-+ .+.
T Consensus 109 ~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l 188 (266)
T 2of3_A 109 ELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECL 188 (266)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34444434444444443 2567777776667776667766665444333300 000
Q ss_pred -------------hhhHH---HHHHHhhccCChhHHHHHHhhhhhhhHHHH
Q 028959 81 -------------SSILM---PVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (201)
Q Consensus 81 -------------~~~~v---~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L 115 (201)
-.+.+ +.+..+++|.|++|=.-|+.|...+|+.+=
T Consensus 189 ~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 189 LVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 24567 889999999999999999999999998764
No 61
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=85.55 E-value=11 Score=35.93 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=39.1
Q ss_pred hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhh---h--hhhHHHHHHHhhccC-ChhHHHHHHhhhhhh
Q 028959 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---H--SSILMPVLLAFLRDG-DSGVAGKSIVCGTNF 110 (201)
Q Consensus 43 ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~e---l--~~~~v~~L~~LL~D~-~~~VvK~aI~~~t~l 110 (201)
+....++.++.+-.+.+..||...+..|..+|..... + .+.+++.|..+|+++ ++.+.+.|..+..+|
T Consensus 147 i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L 220 (780)
T 2z6g_A 147 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220 (780)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3355566666655566667777777776666654311 1 234566666666533 666666666555543
No 62
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=85.15 E-value=17 Score=30.93 Aligned_cols=146 Identities=13% Similarity=0.086 Sum_probs=87.9
Q ss_pred CCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhc----cCcchhHHHHHHHHHHHHhh----ch---hh-hhhhHHH
Q 028959 19 HGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ----SSPESLVRKSLIETIEDIGL----KA---ME-HSSILMP 86 (201)
Q Consensus 19 ~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~----~d~~~~VRk~v~~fiee~c~----~~---~e-l~~~~v~ 86 (201)
++|....+.-+..+.+.+- .+|.-+...+|-++.-. .|.+..|=.-+.+++..+.. .+ .+ -...++|
T Consensus 57 s~d~k~~~~ale~L~~~l~-~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP 135 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLAD-TSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVP 135 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHH-HCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 3566677777777777763 36655444444443321 48888888899999887643 21 22 2578889
Q ss_pred HHHHhhccCChhH---HHHHHhhhhhhhHH--HHHHHhhhhhccCcchhhHHHHHHHHHHhH--------------HHHH
Q 028959 87 VLLAFLRDGDSGV---AGKSIVCGTNFFCR--VLEEITMQFRWHGKVERWLEELWTWMVRFK--------------DAVF 147 (201)
Q Consensus 87 ~L~~LL~D~~~~V---vK~aI~~~t~lyr~--~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK--------------~~Il 147 (201)
.|..=+.|....| ++.++.....+|+. ++.+++ .+. .+++.+.-+.+=+++..+= ..|.
T Consensus 136 ~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~-~g~-ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia 213 (266)
T 2of3_A 136 YLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLL-DAL-KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVA 213 (266)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHH-HGG-GCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHH-ccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHH
Confidence 9999999998777 44444455555544 344444 444 4555666666666665542 2233
Q ss_pred HHhccCCCCchhHHHHHhhhH
Q 028959 148 AIALEPGLVGTKLLALKFLET 168 (201)
Q Consensus 148 ~~~~~s~n~GVr~~aiKF~E~ 168 (201)
. ++++.+.+||-.|+.-+..
T Consensus 214 ~-ll~D~d~~VR~aAl~~lve 233 (266)
T 2of3_A 214 P-FVGDKDVNVRNAAINVLVA 233 (266)
T ss_dssp G-GGGCSSHHHHHHHHHHHHH
T ss_pred H-HHcCCCHHHHHHHHHHHHH
Confidence 3 4445555666666655443
No 63
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=83.49 E-value=11 Score=32.61 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=60.6
Q ss_pred ChHHHHHHHHHHHHhhccC-CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh-----hhHHHHHHHhhcc
Q 028959 21 DLAVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLAFLRD 94 (201)
Q Consensus 21 d~~~Kl~~L~q~~elll~~-dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~-----~~~v~~L~~LL~D 94 (201)
+...+...+..+..+.-+. .......+++.++.+..+.+.++|...+..+...|..+++.. ...++.|..+|.+
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence 3334444444455544332 112346788888888889999999999999999888654322 2457788888875
Q ss_pred --CChhHHHHHHhhhhhh
Q 028959 95 --GDSGVAGKSIVCGTNF 110 (201)
Q Consensus 95 --~~~~VvK~aI~~~t~l 110 (201)
+++.|...++.+.++|
T Consensus 320 ~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 320 AGDREDITEPAICALRHL 337 (529)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 3478888888877766
No 64
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=82.66 E-value=9.1 Score=33.28 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=62.9
Q ss_pred CChHHHHHHHHHHHHhhccCCCc--h-HHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhh-----hhhHHHHHHHh
Q 028959 20 GDLAVKLSSLKQVRGILSSADPS--L-AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH-----SSILMPVLLAF 91 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll~~dp~--l-l~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el-----~~~~v~~L~~L 91 (201)
+|...+......++++..+.++. + -...++.++++-.+++..+|...+..|..+|..+++. -...+|.|..+
T Consensus 72 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 151 (529)
T 1jdh_A 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence 46667777777777765332211 1 1246778888888889999999999999999864322 25688999999
Q ss_pred hccCChhHHHHHHhhhh
Q 028959 92 LRDGDSGVAGKSIVCGT 108 (201)
Q Consensus 92 L~D~~~~VvK~aI~~~t 108 (201)
|.++++.|...+..+..
T Consensus 152 l~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 152 LNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp GGCCCHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 99988877665544443
No 65
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=81.28 E-value=7.6 Score=36.26 Aligned_cols=64 Identities=11% Similarity=0.084 Sum_probs=55.9
Q ss_pred hHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 48 FPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 48 l~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
+.+|+. ....+...++..+.||-.-.+.-|++...++..+..|.+|+|+.|=++||.....+-+
T Consensus 31 y~~Il~-~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck 94 (507)
T 3u0r_A 31 YQVILD-GVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFAT 94 (507)
T ss_dssp HHHHHH-GGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhh
Confidence 455555 3456789999999999999999999999999999999999999999999987776655
No 66
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=81.25 E-value=17 Score=29.60 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHHHHhhccCCCc---hHHhhhHHHhhhc-c-C-cchhHHHHHHHHHHHHhhch----hhhhhhHHHHHH
Q 028959 20 GDLAVKLSSLKQVRGILSSADPS---LAAELFPYLVELQ-S-S-PESLVRKSLIETIEDIGLKA----MEHSSILMPVLL 89 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll~~dp~---ll~~fl~~il~f~-~-d-~~~~VRk~v~~fiee~c~~~----~el~~~~v~~L~ 89 (201)
.|...=...++-++-|+.+++-. ++.+++|.++... . . ....+|.+-+.++..+|+++ +.+-++++.++.
T Consensus 58 ~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 58 KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp TCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 46633334445555555444321 6788888888544 1 1 22279999999999999976 889999999999
Q ss_pred HhhccC--ChhHHHHHHhhhhhhhHHHH
Q 028959 90 AFLRDG--DSGVAGKSIVCGTNFFCRVL 115 (201)
Q Consensus 90 ~LL~D~--~~~VvK~aI~~~t~lyr~~L 115 (201)
.-+-|+ +....=.||.+...+=+.+.
T Consensus 138 k~l~dp~~~l~t~YGAi~GL~~lG~~~v 165 (196)
T 4atg_A 138 GVWMDPNRSEDSQYGALYCLSILSKNVV 165 (196)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHHHhHHHHH
Confidence 888876 56666677776666655555
No 67
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=78.68 E-value=11 Score=34.58 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHHHHhhccCCCc--h-HHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhh-----hhhHHHHHHHh
Q 028959 20 GDLAVKLSSLKQVRGILSSADPS--L-AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH-----SSILMPVLLAF 91 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll~~dp~--l-l~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el-----~~~~v~~L~~L 91 (201)
.+...+......++.+..+.++. + -...++.++++..+++..+|+..+..|..+|..+.+. -...++.|..+
T Consensus 69 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 69 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence 46667777777777655432211 1 1246788888888889999999999999998764322 25688999999
Q ss_pred hccCChhHHHHHHhhhhh
Q 028959 92 LRDGDSGVAGKSIVCGTN 109 (201)
Q Consensus 92 L~D~~~~VvK~aI~~~t~ 109 (201)
|.++++.+...+..+.++
T Consensus 149 L~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 149 LNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp GGCCCHHHHHHHHHHHHH
T ss_pred HCcCCHHHHHHHHHHHHH
Confidence 999888766665444443
No 68
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=78.44 E-value=12 Score=31.55 Aligned_cols=93 Identities=9% Similarity=0.134 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhh-hccCcchhHHHHHHHHHHHHhh-chhhhhhh
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVE-LQSSPESLVRKSLIETIEDIGL-KAMEHSSI 83 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~-f~~d~~~~VRk~v~~fiee~c~-~~~el~~~ 83 (201)
.+....+-...-.+.--..++-... ++-.. + ..++.++-|.+ |..|.+=.||-+++..+.+.|+ .+++-
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~----lLg~~-~-~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVF----LFGYL-S-KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHH----HHHHT-T-TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHH----HHHhc-c-CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 3445555555554432223332222 33332 2 34788888886 8899999999999999999997 77873
Q ss_pred HHHHHHHhhccCChhHHHHHHhhh
Q 028959 84 LMPVLLAFLRDGDSGVAGKSIVCG 107 (201)
Q Consensus 84 ~v~~L~~LL~D~~~~VvK~aI~~~ 107 (201)
+++.+.....|+++.|=|-|+...
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~ 163 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGL 163 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhh
Confidence 667788888999999877777764
No 69
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=77.55 E-value=4.2 Score=36.06 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=51.9
Q ss_pred hHHHhhhccCcchhHHHHHHHHHHHHhhchhhh-----hhhHHHHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 48 FPYLVELQSSPESLVRKSLIETIEDIGLKAMEH-----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 48 l~~il~f~~d~~~~VRk~v~~fiee~c~~~~el-----~~~~v~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
+|.++.+-.+++.+++...+..|..+|..+++. -.-.+|.|..+|+++++.+.+.|..+..+|.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa 72 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 566777777778899999999999999765432 2456889999999999999999998888875
No 70
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=76.78 E-value=19 Score=33.02 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHhhccC-CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh-----hhHHHHHHHhhcc
Q 028959 21 DLAVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLAFLRD 94 (201)
Q Consensus 21 d~~~Kl~~L~q~~elll~~-dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~-----~~~v~~L~~LL~D 94 (201)
+...+...+..+..+.-+. +.......++.++.+..+.+.++|...+.-+...|...++.. ...++.|..+|.+
T Consensus 237 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 237 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 3444445555555554332 122446778888888888888999999988888887553321 2367788888875
Q ss_pred C-C-hhHHHHHHhhhhhh
Q 028959 95 G-D-SGVAGKSIVCGTNF 110 (201)
Q Consensus 95 ~-~-~~VvK~aI~~~t~l 110 (201)
. + +.|...++.+..+|
T Consensus 317 ~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 317 AGDREDITEPAICALRHL 334 (644)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHH
Confidence 3 2 67877777776666
No 71
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=76.10 E-value=30 Score=28.09 Aligned_cols=151 Identities=9% Similarity=0.086 Sum_probs=96.7
Q ss_pred hcCCChHHHHHHHHHHHHhhccCCCc--------hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch----------h
Q 028959 17 NNHGDLAVKLSSLKQVRGILSSADPS--------LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA----------M 78 (201)
Q Consensus 17 ~~~~d~~~Kl~~L~q~~elll~~dp~--------ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~----------~ 78 (201)
-.+++=.++.+-|.++++++-..... .+..+.+.+-.+..|.+..|....++.+...+... .
T Consensus 18 l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~ 97 (278)
T 4ffb_C 18 LTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNI 97 (278)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhH
Confidence 34567778888899888887532111 23334444445668999999998888888766421 3
Q ss_pred hhhhhHHHHHHH-hhccCChhHHHHHHhhhhhhh------HHHHHHHhhhhhccCcchhhHHHHHHHHHHhHH-------
Q 028959 79 EHSSILMPVLLA-FLRDGDSGVAGKSIVCGTNFF------CRVLEEITMQFRWHGKVERWLEELWTWMVRFKD------- 144 (201)
Q Consensus 79 el~~~~v~~L~~-LL~D~~~~VvK~aI~~~t~ly------r~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~------- 144 (201)
.++..++|.|.. .|.|..+.+...++.+...+. ..+++.+. .+. .+++..-...+..++..+=.
T Consensus 98 ~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~-~~l-~~Knpkv~~~~l~~l~~~l~~fg~~~~ 175 (278)
T 4ffb_C 98 TLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVI-PFF-EKKLPKLIAAAANCVYELMAAFGLTNV 175 (278)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHG-GGG-GCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHH-HHH-hccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 456667777765 478888988888877766553 23444433 333 23444556777777765421
Q ss_pred -----------HHHHHhccCCCCchhHHHHHhhhHhh
Q 028959 145 -----------AVFAIALEPGLVGTKLLALKFLETHV 170 (201)
Q Consensus 145 -----------~Il~~~~~s~n~GVr~~aiKF~E~vI 170 (201)
.+.. .+++.|.+||..|++++-.+-
T Consensus 176 ~~k~~l~~i~~~l~k-~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 176 NVQTFLPELLKHVPQ-LAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp CHHHHHHHHGGGHHH-HHTCSSHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHH
Confidence 1222 457889999999999875553
No 72
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=73.63 E-value=25 Score=33.43 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHHhhccCCC-chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh-----hhHHHHHHHhhc
Q 028959 20 GDLAVKLSSLKQVRGILSSADP-SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLAFLR 93 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll~~dp-~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~-----~~~v~~L~~LL~ 93 (201)
.+...+...+..+.++.-+..+ .-....++.++.+..+.+.+||+..+..|..++...++.. ...++.|..+|.
T Consensus 372 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 451 (780)
T 2z6g_A 372 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 451 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHH
Confidence 3444455555555555543211 2346788888888888999999999999998888654322 346788888887
Q ss_pred c-CC-hhHHHHHHhhhhhhh
Q 028959 94 D-GD-SGVAGKSIVCGTNFF 111 (201)
Q Consensus 94 D-~~-~~VvK~aI~~~t~ly 111 (201)
+ ++ +.|...++.+..+|-
T Consensus 452 ~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 452 RAGDREDITEPAICALRHLT 471 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 5 33 377777777766653
No 73
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=72.88 E-value=11 Score=31.26 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=50.1
Q ss_pred hHHHhhhccCcch--hHHHHHHHHHHHHhhchhhh-----hhhHHHHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 48 FPYLVELQSSPES--LVRKSLIETIEDIGLKAMEH-----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 48 l~~il~f~~d~~~--~VRk~v~~fiee~c~~~~el-----~~~~v~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
+|.++++-.+++. .++...+.+|.-.|..+++. -.-.+|.|..+|+.+++.|.+.|.-+..+|-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5677777766666 88888889999888765322 2346899999999999999999988888874
No 74
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=71.76 E-value=11 Score=31.88 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHH---------HHHhh--------ccCCCchHHhhhHHHhhhccCcchhHHHHHHH
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQ---------VRGIL--------SSADPSLAAELFPYLVELQSSPESLVRKSLIE 68 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q---------~~ell--------l~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~ 68 (201)
|--.+.+|..+ . .+ +..+..++. |+|.+ ...+|. ..++.|.+...|++..|||.+++
T Consensus 88 R~~Av~lLg~~-~-~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~~l~~~~~W~~d~n~~VRR~Ase 161 (240)
T 3l9t_A 88 RMYAVFLFGYL-S-KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---KALPIIDEWLKSSNLHTRRAATE 161 (240)
T ss_dssp HHHHHHHHHHT-T-TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---TTHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHhc-c-Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 33456677777 2 34 467777776 66653 222343 24567778899999999999999
Q ss_pred HHHHHhhc--hhhhhhhHHHHHHHhhccCChhHHHHHH
Q 028959 69 TIEDIGLK--AMEHSSILMPVLLAFLRDGDSGVAGKSI 104 (201)
Q Consensus 69 fiee~c~~--~~el~~~~v~~L~~LL~D~~~~VvK~aI 104 (201)
.+.--|+. ..+.-..++|.|..|..|++--|-|.+=
T Consensus 162 ~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVa 199 (240)
T 3l9t_A 162 GLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVG 199 (240)
T ss_dssp HTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHH
T ss_pred hhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHH
Confidence 97654443 1233344677777777777666555443
No 75
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=70.28 E-value=22 Score=34.76 Aligned_cols=89 Identities=8% Similarity=0.022 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhccCCC---chH-HhhhHHHhhhccCcchhHHHHHHHHHHHHhhch---hhhh--hhHHHHHHHhhcc
Q 028959 24 VKLSSLKQVRGILSSADP---SLA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKA---MEHS--SILMPVLLAFLRD 94 (201)
Q Consensus 24 ~Kl~~L~q~~elll~~dp---~ll-~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~---~el~--~~~v~~L~~LL~D 94 (201)
.+.+.|..+..|.-+.+. ... ...++.++++..+.+..||+.-++.|..++... .++. ...++.|..||..
T Consensus 597 ~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC
Confidence 445566666666543211 011 246888889988889999999999999888754 2333 3588999999999
Q ss_pred CChhHHHHHHhhhhhhhH
Q 028959 95 GDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 95 ~~~~VvK~aI~~~t~lyr 112 (201)
++..|.+.|..+.++|-.
T Consensus 677 ~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 677 EDEETATACAGALAIITS 694 (810)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 999999999888888754
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=68.92 E-value=55 Score=28.03 Aligned_cols=76 Identities=12% Similarity=0.096 Sum_probs=38.0
Q ss_pred hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCc
Q 028959 78 MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG 157 (201)
Q Consensus 78 ~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~G 157 (201)
++++..++.-+.+||+.+||-++++|+.+. +++. +.|.. ++.-..+.++-..+=++..--|+.|
T Consensus 184 ~~i~~~I~~eI~elL~~eD~~l~e~aLd~L--------e~il-----s~pi~---~~~~~~~~~~~~~v~~l~~~~~~~~ 247 (265)
T 3b2a_A 184 SGHLTLILDEIPSLLQNDNEFIVELALDVL--------EKAL-----SFPLL---ENVKIELLKISRIVDGLVYREGAPI 247 (265)
T ss_dssp CCCGGGTTTTHHHHHTCSCHHHHHHHHHHH--------HHHT-----TSCCC---SCCHHHHHHHHHHHHHGGGCSSCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH--------HHHH-----cCccc---HhHHHHHHHHHHHHHHHHHhcCChh
Confidence 555555555566666655666666555432 2221 11211 2222233344444444333457777
Q ss_pred hhHHHHHhhhHh
Q 028959 158 TKLLALKFLETH 169 (201)
Q Consensus 158 Vr~~aiKF~E~v 169 (201)
+|--|=|-+|..
T Consensus 248 ~~~ka~~v~~~l 259 (265)
T 3b2a_A 248 IRLKAKKVSDLI 259 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 77
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=67.35 E-value=13 Score=32.34 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=49.0
Q ss_pred hhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh-----hhHHHHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 46 ~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~-----~~~v~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
..++.++++-.+++..+++..+..|..++..+++.. .-++|.|..||++.++.+.+.|..+-.+|.
T Consensus 263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 467778888778888899999999998886544332 235788889998888888877766655543
No 78
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=65.04 E-value=29 Score=27.14 Aligned_cols=64 Identities=13% Similarity=0.085 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL 75 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~ 75 (201)
+.++.+++++=-.+.|.++=+..++ |+- .|++.+.|+..++....|+...-|..+...+...+.
T Consensus 10 ~kk~~~ii~EYf~~~D~~Ea~~~l~---eL~---~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 10 EKTLTPIIQEYFEHGDTNEVAEMLR---DLN---LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHH---HHT---CSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH---HhC---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3477888888888889766666555 432 688999999999999999999999999988888765
No 79
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=64.18 E-value=1e+02 Score=29.29 Aligned_cols=104 Identities=10% Similarity=-0.025 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-----hh
Q 028959 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----ME 79 (201)
Q Consensus 5 ~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-----~e 79 (201)
.-+++.++|+.....+|.+.|-+.-..++++ .++|.... ++..++. .+.+..||-+.+-.++...+++ ++
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~--~~~p~~~~-~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQA--QVSPQAWH-FSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHSTTHHH-HHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--hcCHHHHH-HHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 4567888888855556765665554444442 23554322 3333433 4678899999999999777654 22
Q ss_pred hhhhHHHHHHHhhcc---CChhHHHHHHhhhhhhhHH
Q 028959 80 HSSILMPVLLAFLRD---GDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 80 l~~~~v~~L~~LL~D---~~~~VvK~aI~~~t~lyr~ 113 (201)
-...+-..|..++.. ..+.|..+..++.+.|.+.
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~ 133 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALS 133 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 233333344444443 3467777777777776664
No 80
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=62.56 E-value=12 Score=37.37 Aligned_cols=71 Identities=10% Similarity=0.156 Sum_probs=50.5
Q ss_pred hHHhhhHHHhhhcc-----CcchhHHHHHHHHHH---HHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHH
Q 028959 43 LAAELFPYLVELQS-----SPESLVRKSLIETIE---DIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 43 ll~~fl~~il~f~~-----d~~~~VRk~v~~fie---e~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
++++.++.++.+-. |+...||..+.-.|+ +-.+.|+++++.++.-|...|.|++|.|.-.|..+..+|-..
T Consensus 492 ~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 492 FVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 56777777776654 466667755545554 444578999999999999999888898877776665554443
No 81
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=62.20 E-value=94 Score=30.39 Aligned_cols=129 Identities=10% Similarity=0.075 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhhccCCC-------chHH--hhhHHHhhhccCcchhHHHHHHHHHHHHhhchh----hhh----hh---
Q 028959 24 VKLSSLKQVRGILSSADP-------SLAA--ELFPYLVELQSSPESLVRKSLIETIEDIGLKAM----EHS----SI--- 83 (201)
Q Consensus 24 ~Kl~~L~q~~elll~~dp-------~ll~--~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~----el~----~~--- 83 (201)
.+.+.|..+..|.-..++ ..+. ..++.+.++..+.+..||+--++-|.-.+.... ++. ++
T Consensus 575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence 477788888888765422 1454 488889999988899999999999987775332 121 22
Q ss_pred HHHHHHHhhccCChhHHHHHHhhhhhh---hHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccC--CCCch
Q 028959 84 LMPVLLAFLRDGDSGVAGKSIVCGTNF---FCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEP--GLVGT 158 (201)
Q Consensus 84 ~v~~L~~LL~D~~~~VvK~aI~~~t~l---yr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s--~n~GV 158 (201)
-++.|..|++.+|+.+.+.|.-+.+++ ++.+- +.+.... ..-+.++. ++.. +++|+
T Consensus 655 rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia-----~~ll~~~-------------~gi~~Ll~-lL~~~~~~~~l 715 (778)
T 3opb_A 655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA-----KELLTKK-------------ELIENAIQ-VFADQIDDIEL 715 (778)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH-----HHHTTCH-------------HHHHHHHH-HHHHTTTCHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH-----HHHHHcc-------------ccHHHHHH-HHhccCCCHHH
Confidence 267888899888999888877766665 45555 4444321 22223333 2232 67777
Q ss_pred hHHHHHhhhHhhh
Q 028959 159 KLLALKFLETHVL 171 (201)
Q Consensus 159 r~~aiKF~E~vIL 171 (201)
|--++.++--++-
T Consensus 716 ~~R~~~~l~NL~~ 728 (778)
T 3opb_A 716 RQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666653
No 82
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=60.63 E-value=27 Score=34.15 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=53.4
Q ss_pred hhHHHhhhccCcchhHHHHHHHHHHHHhhchh----hhh--hhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 47 LFPYLVELQSSPESLVRKSLIETIEDIGLKAM----EHS--SILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 47 fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~----el~--~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
.++.++.+....+..+|+..+..|.-++..++ .++ ...++.|..||.++++.|.++|..+..|+-.
T Consensus 666 ~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 55667777777889999999999998887322 233 3588999999999999999999999888754
No 83
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=59.81 E-value=20 Score=32.41 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=49.1
Q ss_pred HhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhh-----hHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS-----ILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 45 ~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~-----~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
...++.++++-.+++..+++..+..|..++..+++... -++|.|..||+..++.+.+.|..+-.+|
T Consensus 378 ~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL 448 (458)
T 3nmz_A 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448 (458)
T ss_dssp TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34677788888888888999999999888865443322 3478888888888888888777666555
No 84
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=57.75 E-value=22 Score=33.39 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=58.9
Q ss_pred CCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhh-----hhhHHHHHHHhhccCChhHHHHHHhhhhhhh
Q 028959 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH-----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (201)
Q Consensus 40 dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el-----~~~~v~~L~~LL~D~~~~VvK~aI~~~t~ly 111 (201)
+..+-+.=++.++++-.+++.+++...+..|..+|..+.+. -.-.||.|..||+.+++.|...|+-+..+|=
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS 118 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 44566777899999888889999999999999999855332 2357899999999999999999998887764
No 85
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=55.80 E-value=28 Score=33.18 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=47.6
Q ss_pred chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh---chhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGL---KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 42 ~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~---~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
.+++.+++.+..+.. +++.||.....+++..+. .++++++.+++.|...|.| |.|...|..+..++
T Consensus 486 ~~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l 554 (963)
T 2x19_B 486 DVVPGLIGLIPRISI-SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKI 554 (963)
T ss_dssp SHHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHH
Confidence 467777776556654 467799999888886654 5689999999999988865 66666555544433
No 86
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.68 E-value=47 Score=24.65 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcch-hHHHHHHHHHHHHhhc
Q 028959 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPES-LVRKSLIETIEDIGLK 76 (201)
Q Consensus 5 ~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~-~VRk~v~~fiee~c~~ 76 (201)
...++-++|++=-.++|.++=+.+++ ||- -|.+.++|+...+....+++. ..|..+...+...++.
T Consensus 6 l~kki~~ll~EY~~~~D~~Ea~~cl~---eL~---~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~ 72 (129)
T 2nsz_A 6 LVKEIDMLLKEYLLSGDISEAEHCLK---ELE---VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 72 (129)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHH---HHT---CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH---HhC---CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 45678888888888899766555554 432 578999999999988888764 6788888888777653
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=53.30 E-value=1.6e+02 Score=28.24 Aligned_cols=100 Identities=7% Similarity=-0.005 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhc--cCcchhHHHHHHHHHHHHhhch-----
Q 028959 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ--SSPESLVRKSLIETIEDIGLKA----- 77 (201)
Q Consensus 5 ~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~--~d~~~~VRk~v~~fiee~c~~~----- 77 (201)
.-+++.++|.++.. +|...| .-.+++++ .+.|. |...++++. .+.+..+|-+-+-.+....+++
T Consensus 3 d~~~l~~~L~~~~s-pd~~~r--Ae~~L~~~--~~~p~----~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~ 73 (960)
T 1wa5_C 3 DLETVAKFLAESVI-ASTAKT--SERNLRQL--ETQDG----FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN 73 (960)
T ss_dssp HHHHHHHHHHHTTS-GGGHHH--HHHHHHHH--HTSTT----HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred cHHHHHHHHHHhcC-CCHHHH--HHHHHHHh--hcCCC----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 45789999998665 455455 44444444 34555 555555443 3356788888888887665543
Q ss_pred ------hhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHH
Q 028959 78 ------MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 78 ------~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
++--..+-..|...|.++++.|-+++-++.+.|.+.
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~ 115 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS 115 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 122333444566666666777777777777777654
No 88
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=52.68 E-value=72 Score=24.01 Aligned_cols=35 Identities=6% Similarity=-0.038 Sum_probs=23.6
Q ss_pred HhhhHHHhhhccCcchhHHHHHHHHHHH---Hhhchhh
Q 028959 45 AELFPYLVELQSSPESLVRKSLIETIED---IGLKAME 79 (201)
Q Consensus 45 ~~fl~~il~f~~d~~~~VRk~v~~fiee---~c~~~~e 79 (201)
.+|++++..+....+..||+-+.+.|.+ +.+.+|+
T Consensus 84 ~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~ 121 (140)
T 3ldz_A 84 RDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQ 121 (140)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5677777766656677788888888873 4445554
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=52.67 E-value=23 Score=33.98 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=46.7
Q ss_pred chHHhhhHHHhhhc-cCcchhHHHHHHHHHHHHhh---chhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 42 SLAAELFPYLVELQ-SSPESLVRKSLIETIEDIGL---KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 42 ~ll~~fl~~il~f~-~d~~~~VRk~v~~fiee~c~---~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
..++++++-+..+. .|+++.||......|+..+. .++++++.+++.|...| | |.|...|..+..++-+
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~ 572 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCR 572 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHH
Confidence 46778888444565 36789999999888886554 66899999999998888 4 6676666655555443
No 90
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=52.63 E-value=21 Score=34.89 Aligned_cols=70 Identities=10% Similarity=0.157 Sum_probs=46.4
Q ss_pred hHHhhhHHHhhhcc-----CcchhHHHHHHHHHH---HHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhH
Q 028959 43 LAAELFPYLVELQS-----SPESLVRKSLIETIE---DIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 43 ll~~fl~~il~f~~-----d~~~~VRk~v~~fie---e~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr 112 (201)
++++.++.++.+.. |+.+.||......++ +..+.++++++.+++.|...|.|+++.|.-.|..+..++-.
T Consensus 492 ~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 492 FVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45666665554331 355556643444444 44457899999999999999999888887777666555544
No 91
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=52.15 E-value=44 Score=29.30 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=58.7
Q ss_pred HHhhccCCCchHHhhhHHHhhhc---cCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccC--ChhHHHHHHhhh
Q 028959 33 RGILSSADPSLAAELFPYLVELQ---SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG--DSGVAGKSIVCG 107 (201)
Q Consensus 33 ~elll~~dp~ll~~fl~~il~f~---~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~--~~~VvK~aI~~~ 107 (201)
-+.+...+|.|.++.++++-... .+.+..+.|-.++.|.+.-+...++...=+.+|..++.-. ++.+-.||..-.
T Consensus 105 l~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly~~~~~d~~~k~Kvl~li 184 (315)
T 3qml_C 105 VEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVYERNNKDKQLQIKVLELI 184 (315)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 34444568999999999876653 2244578999999999998875445555556777776655 899999999999
Q ss_pred hhhhHH
Q 028959 108 TNFFCR 113 (201)
Q Consensus 108 t~lyr~ 113 (201)
..+|..
T Consensus 185 ~d~f~~ 190 (315)
T 3qml_C 185 SKILKA 190 (315)
T ss_dssp HHHHHH
T ss_pred HHHccc
Confidence 988863
No 92
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.78 E-value=55 Score=25.13 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcc-hhHHHHHHHHHHHHhh
Q 028959 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPE-SLVRKSLIETIEDIGL 75 (201)
Q Consensus 5 ~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~-~~VRk~v~~fiee~c~ 75 (201)
...++-++|++=-.++|.++=+.+++ ||- -|.+.++|+...+....|+. ...|..+...+...+.
T Consensus 8 l~kki~~lL~EY~~~~D~~EA~~cl~---EL~---~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~ 73 (152)
T 2ion_A 8 LVKEIDMLLKEYLLSGDISEAEHCLK---ELE---VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 73 (152)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHH---HHT---CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH---HhC---CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 45678888888888889766555554 442 57888999999998887874 6678777777776664
No 93
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=49.04 E-value=17 Score=35.93 Aligned_cols=94 Identities=12% Similarity=0.019 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHhhcc------CCCchHHhhhHHHhhh-----ccCcchhHHHHHHHHHHHHhh---chhhhhhhHH
Q 028959 20 GDLAVKLSSLKQVRGILSS------ADPSLAAELFPYLVEL-----QSSPESLVRKSLIETIEDIGL---KAMEHSSILM 85 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll~------~dp~ll~~fl~~il~f-----~~d~~~~VRk~v~~fiee~c~---~~~el~~~~v 85 (201)
.+.+.-+-.|..+-|-+-. .+...++.+++-+..+ ..++.+.||....+.|+.-+. .++++++.++
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L 537 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALI 537 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 3344455555555554432 1112334444444343 237889999999999986665 7899999988
Q ss_pred HHHHH--hhccCChhHHHHHHhhhhhhhHH
Q 028959 86 PVLLA--FLRDGDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 86 ~~L~~--LL~D~~~~VvK~aI~~~t~lyr~ 113 (201)
+.+.. -+.++++.|..+|..+..++.+.
T Consensus 538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 538 EYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 88888 77788888988887766665443
No 94
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=48.57 E-value=30 Score=28.29 Aligned_cols=52 Identities=2% Similarity=0.034 Sum_probs=44.3
Q ss_pred chHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhc
Q 028959 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLR 93 (201)
Q Consensus 42 ~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~ 93 (201)
..++.+|+-+....+|+.--|+|-+.-++.+++++++++..+.+.....+-.
T Consensus 147 ~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~~~l~~ 198 (235)
T 1t06_A 147 SKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIAKEVGI 198 (235)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHCE
T ss_pred hhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcc
Confidence 4667777777767789999999999999999999999999999987776654
No 95
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=48.17 E-value=42 Score=32.35 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=48.0
Q ss_pred hHHhhhH-HHhhhccCc---chhHHHHHHHHHHHHhhc-hhhhhhhHHHHHHHhhccCChhHHHHHHhhhhh
Q 028959 43 LAAELFP-YLVELQSSP---ESLVRKSLIETIEDIGLK-AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (201)
Q Consensus 43 ll~~fl~-~il~f~~d~---~~~VRk~v~~fiee~c~~-~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~ 109 (201)
-+..|+. .+++.-.|+ ++-||....-+|+..+.- +++++..+++.+...|.|+++.|.-.|..|..+
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~ 522 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEK 522 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 3455554 345444455 888999999999987764 468899999999988888887776555555444
No 96
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=47.47 E-value=28 Score=34.14 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=52.0
Q ss_pred hHHHhhhccCcchhHHHHHHHHHHHHhhchhhh----h--hhHHHHHHHhhcc--CChhHHHHHHhhhhhhhH
Q 028959 48 FPYLVELQSSPESLVRKSLIETIEDIGLKAMEH----S--SILMPVLLAFLRD--GDSGVAGKSIVCGTNFFC 112 (201)
Q Consensus 48 l~~il~f~~d~~~~VRk~v~~fiee~c~~~~el----~--~~~v~~L~~LL~D--~~~~VvK~aI~~~t~lyr 112 (201)
++-++.+....+.++|+-.++.+.-++..++.. + ...++.|..+|.+ +++.++.|++.+..|+..
T Consensus 656 L~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 656 FNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 445778888899999999999999876544332 2 2467788899999 899999999999888875
No 97
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=47.37 E-value=1.1e+02 Score=24.84 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhcCCCh--HHHHHHHHHHHHhhccCCCc--h--HHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhh
Q 028959 7 DQALSLLAAANNHGDL--AVKLSSLKQVRGILSSADPS--L--AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH 80 (201)
Q Consensus 7 ~~v~~lLn~A~~~~d~--~~Kl~~L~q~~elll~~dp~--l--l~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el 80 (201)
+.++++|+. +|. ..|......++.+..+.++. . -..-+|.++++-.+++.++++..+.-|.-++..+++.
T Consensus 11 ~~lV~lL~s----~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 11 ERAVSMLEA----DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp HHHHHTCCS----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhCC----CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 455555542 333 45667777777766554332 1 2456889999888899999999999999888754322
Q ss_pred ---h--hhHHHHHHHhhcc-CChhHHHHHHh
Q 028959 81 ---S--SILMPVLLAFLRD-GDSGVAGKSIV 105 (201)
Q Consensus 81 ---~--~~~v~~L~~LL~D-~~~~VvK~aI~ 105 (201)
+ .-.+|.|..+|++ .++.+.+.+..
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~ 117 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITG 117 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHH
Confidence 2 2468899999984 67888887763
No 98
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=46.74 E-value=42 Score=29.03 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=41.6
Q ss_pred cchhHHHHHHHHHHHHhhchh---hhh---hhHHHHHHHhhccCChhHHHHHHhhhhhh
Q 028959 58 PESLVRKSLIETIEDIGLKAM---EHS---SILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 58 ~~~~VRk~v~~fiee~c~~~~---el~---~~~v~~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
.+..+|+..+..|..+|..+. ..+ .-++|.|..||+.+++.|...+..+..+|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL 154 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 154 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 356799999999999998653 222 34699999999999999988887766555
No 99
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=44.99 E-value=41 Score=31.53 Aligned_cols=85 Identities=11% Similarity=0.151 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCch-----HHhhhHHHh-hhccCcchhHHHHHHHHHHHHhhch-h
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSL-----AAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKA-M 78 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~l-----l~~fl~~il-~f~~d~~~~VRk~v~~fiee~c~~~-~ 78 (201)
.+++.-+|+.- .++|..+|...+..+.+++. ||+. -.+.+..++ .+-.|++.+||..-++.+.-.|... +
T Consensus 33 ~~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 33 EDKILPVLKDL-KSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHTTHHHHHHH-SSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHHHHHHc-CCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 34667777763 34677789999999999883 5552 234556655 5678999999999999998777532 3
Q ss_pred hhhhh-----HHHHHHHhhc
Q 028959 79 EHSSI-----LMPVLLAFLR 93 (201)
Q Consensus 79 el~~~-----~v~~L~~LL~ 93 (201)
+.+.. +++.|..+|+
T Consensus 110 d~~~~l~~~~il~~L~~~l~ 129 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAK 129 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHH
Confidence 33332 5666666664
No 100
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=43.98 E-value=46 Score=23.01 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh
Q 028959 26 LSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS 81 (201)
Q Consensus 26 l~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~ 81 (201)
++.|+++++-..+ +|.-+.+|++-|-.|...+-. . .-|++=+.+..+-||+|+
T Consensus 14 ~~yl~~VK~rF~~-~p~~Y~~FL~im~~fk~~~~~-~-~~v~~rV~~Lf~~hpdLi 66 (80)
T 2cr7_A 14 LTYLDQVKIRFGS-DPATYNGFLEIMKEFKSQSID-T-PGVIRRVSQLFHEHPDLI 66 (80)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHTTSSC-H-HHHHHHHHHHGGGCHHHH
T ss_pred HHHHHHHHHHHcc-ChHHHHHHHHHHHHHHhcCCC-H-HHHHHHHHHHHcCCHHHH
Confidence 7889999998854 899999999999999854321 1 233444555666676654
No 101
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.56 E-value=59 Score=27.85 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~ 77 (201)
..++-++|++--.++|..+ ..+-++|+- .|++.++|+..++....|++..-|..++.++...+++.
T Consensus 11 ~k~~~~ll~Ey~~~~d~~E---a~~ci~el~---~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~ 76 (339)
T 1ug3_A 11 EKKSKAIIEEYLHLNDMKE---AVQCVQELA---SPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAG 76 (339)
T ss_dssp HHHHHHHHHHHHHHCCHHH---HHHHHHTTC---CGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHH---HHHHHHHcC---CcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCC
Confidence 4577888888888889754 455556653 67899999999999999998899999999999888643
No 102
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=42.70 E-value=89 Score=23.82 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=32.5
Q ss_pred CCchHHhhhHHHhhhccCcchh-HHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccC
Q 028959 40 DPSLAAELFPYLVELQSSPESL-VRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG 95 (201)
Q Consensus 40 dp~ll~~fl~~il~f~~d~~~~-VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~ 95 (201)
+..+||+-|..+.+++.+.+++ +++.+-.|+++. ++.+..|...+...
T Consensus 19 ~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~--------~~~l~~L~~al~~~ 67 (153)
T 3us6_A 19 MEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDS--------ERILKDLSFAVDQQ 67 (153)
T ss_dssp HTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHH--------HHHHHHHHHHHTSS
T ss_pred cccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHcC
Confidence 4568888899999998765554 677777777765 33444555556544
No 103
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=42.62 E-value=1.2e+02 Score=23.51 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=22.8
Q ss_pred HhhhHHHhhhccC-cchhHHHHHHHHHHH---Hhhchhh
Q 028959 45 AELFPYLVELQSS-PESLVRKSLIETIED---IGLKAME 79 (201)
Q Consensus 45 ~~fl~~il~f~~d-~~~~VRk~v~~fiee---~c~~~~e 79 (201)
.+|+++++.+... .+..||+-+.++|++ +.+.+++
T Consensus 94 ~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~ 132 (163)
T 1x5b_A 94 RDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQ 132 (163)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCST
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 5677777765533 566788888888873 3444454
No 104
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=40.09 E-value=2.3e+02 Score=26.35 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=22.0
Q ss_pred hHHHhhhccCcchhHHHHHHHHHHHHhhch---hhhhhhHHHHHHHhhcc
Q 028959 48 FPYLVELQSSPESLVRKSLIETIEDIGLKA---MEHSSILMPVLLAFLRD 94 (201)
Q Consensus 48 l~~il~f~~d~~~~VRk~v~~fiee~c~~~---~el~~~~v~~L~~LL~D 94 (201)
++.++.+...++.+|++-.+..|...+.-. ..+-..++|.|..||.+
T Consensus 357 lp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~ 406 (584)
T 3l6x_A 357 LSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPG 406 (584)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcC
Confidence 444444444445555555555555444411 22233455555555553
No 105
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=39.98 E-value=52 Score=22.53 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhh
Q 028959 24 VKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS 81 (201)
Q Consensus 24 ~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~ 81 (201)
.=++.|+++++-..+ +|.-+.+|++-|-.|...+-. . .-|++=+.+..+.||+|+
T Consensus 6 dA~~yl~~VK~~F~~-~p~~Y~~FL~im~~~k~~~~~-~-~~v~~rv~~Lf~~hpdLi 60 (77)
T 2czy_A 6 DALTYLDQVKIRFGS-DPATYNGFLEIMKEFKSQSID-T-PGVIRRVSQLFHEHPDLI 60 (77)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTTCSC-H-HHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHcCCC-H-HHHHHHHHHHHcCCHHHH
Confidence 447889999998854 899999999999999854311 1 123333445566676654
No 106
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=37.94 E-value=62 Score=25.92 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=13.6
Q ss_pred hccCcchhHHHHHHHHHHHHhhchhhh
Q 028959 54 LQSSPESLVRKSLIETIEDIGLKAMEH 80 (201)
Q Consensus 54 f~~d~~~~VRk~v~~fiee~c~~~~el 80 (201)
...|++--|||-|+=.+.++++++|+.
T Consensus 167 ~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 167 DRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp TTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 334444445555555555555555543
No 107
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=37.10 E-value=1.3e+02 Score=26.87 Aligned_cols=83 Identities=16% Similarity=0.081 Sum_probs=49.3
Q ss_pred HHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-h-h---hhhhHHHHHHHhhccCChhHHHHH
Q 028959 29 LKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-M-E---HSSILMPVLLAFLRDGDSGVAGKS 103 (201)
Q Consensus 29 L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-~-e---l~~~~v~~L~~LL~D~~~~VvK~a 103 (201)
|...--..++|||+|...++.+|+-+=+-.++.=--..++.||++...- + + ....+...|..-+..++-.|+.||
T Consensus 279 L~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErA 358 (392)
T 2jak_A 279 LAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERA 358 (392)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3333333457899999999999986654433332233456666666533 2 2 333344445555667788888888
Q ss_pred Hhhhhhhh
Q 028959 104 IVCGTNFF 111 (201)
Q Consensus 104 I~~~t~ly 111 (201)
+..-.|=|
T Consensus 359 L~~wnNe~ 366 (392)
T 2jak_A 359 LYYWNNEY 366 (392)
T ss_dssp HGGGGCHH
T ss_pred HHHhCcHH
Confidence 76665543
No 108
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=35.49 E-value=26 Score=29.05 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=33.2
Q ss_pred hhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhh
Q 028959 53 ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGT 108 (201)
Q Consensus 53 ~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t 108 (201)
.+..|++.+||.-+++-+ ..+.|..|+.|+++.|=+.++....
T Consensus 177 ~ll~D~d~~VR~aaa~~l-------------~~~~L~~Ll~D~d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 177 LMTQDPEPEVRRIVASRL-------------RGDDLLELLHDPDWTVRLAAVEHAS 219 (244)
T ss_dssp GSTTCSSHHHHHHHHHHC-------------CGGGGGGGGGCSSHHHHHHHHHHSC
T ss_pred HHHcCCCHHHHHHHHHhC-------------CHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 577899999999888753 1245777788988888888888765
No 109
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=34.15 E-value=1.8e+02 Score=26.38 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=46.9
Q ss_pred HHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHH--HHHHHHHhhch-h-hh---hhhHHHHHHHhhccCChhHH
Q 028959 28 SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSL--IETIEDIGLKA-M-EH---SSILMPVLLAFLRDGDSGVA 100 (201)
Q Consensus 28 ~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v--~~fiee~c~~~-~-el---~~~~v~~L~~LL~D~~~~Vv 100 (201)
+|...--..++|||+|.+.++.+||-+= |-+.-.|.| ++.||+++..- + ++ ...+...|..-+..++-.|+
T Consensus 266 qL~ycv~qf~eKDp~L~~~vi~~LLk~W--P~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVA 343 (449)
T 2npp_B 266 QLAYCVVQFLEKDSTLTEPVVMALLKYW--PKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVA 343 (449)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhC--CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3433333446889999999999998664 444445554 45555566422 2 22 23333344445567777888
Q ss_pred HHHHhhhhh
Q 028959 101 GKSIVCGTN 109 (201)
Q Consensus 101 K~aI~~~t~ 109 (201)
.||+..-.|
T Consensus 344 ErAL~~w~N 352 (449)
T 2npp_B 344 ERALYYWNN 352 (449)
T ss_dssp HHHHGGGGC
T ss_pred HHHHHHHCC
Confidence 887765443
No 110
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=33.06 E-value=93 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=13.5
Q ss_pred hccCcchhHHHHHHHHHHHHhhchhhh
Q 028959 54 LQSSPESLVRKSLIETIEDIGLKAMEH 80 (201)
Q Consensus 54 f~~d~~~~VRk~v~~fiee~c~~~~el 80 (201)
...|++--|||-|.=.+.++++++|+.
T Consensus 174 ~~~d~~~yV~kAvgW~Lr~~~k~~p~~ 200 (232)
T 3jxy_A 174 LHSSKEFFIQKAIGWVLREYAKTNPDV 200 (232)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 334444555555555555555555543
No 111
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=33.05 E-value=1.8e+02 Score=27.72 Aligned_cols=103 Identities=7% Similarity=0.063 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCc------chhHHHHHHHHHHHHh----
Q 028959 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSP------ESLVRKSLIETIEDIG---- 74 (201)
Q Consensus 5 ~~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~------~~~VRk~v~~fiee~c---- 74 (201)
.|+.+++++.+... +....+-.+-.-+-++..+.-| --++++++++.....+ +...+....+++..+|
T Consensus 83 ir~~ll~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 83 LKQKILESIVRFAG-GPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 46677787776542 2222333333334455545446 6688888888765332 4456777777776444
Q ss_pred hch------------hhhhhhHHHHHHHhhccC-Ch-------hHHHHHHhhhhh
Q 028959 75 LKA------------MEHSSILMPVLLAFLRDG-DS-------GVAGKSIVCGTN 109 (201)
Q Consensus 75 ~~~------------~el~~~~v~~L~~LL~D~-~~-------~VvK~aI~~~t~ 109 (201)
..+ .+.++.+++.+..+|.+. ++ .+.+.++.|...
T Consensus 161 ~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~ 215 (971)
T 2x1g_F 161 VIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGT 215 (971)
T ss_dssp HCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHH
Confidence 211 244667777777777642 22 688888888865
No 112
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=32.82 E-value=2e+02 Score=23.33 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=77.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHh------hhccCcc----h----hHHHHHHHHHHHHhh
Q 028959 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLV------ELQSSPE----S----LVRKSLIETIEDIGL 75 (201)
Q Consensus 10 ~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il------~f~~d~~----~----~VRk~v~~fiee~c~ 75 (201)
++.|.+.-.=++ +=.+.|+++++.+...-+.++|.|++.+. .+..|++ . .+|+....++.+.|.
T Consensus 25 le~Lk~~~~fTe--eD~~~L~~l~~~l~~~~de~vD~FY~yl~~~pela~~l~~~~g~~~~~~l~Rlr~~~~~W~~dLF~ 102 (195)
T 2veb_A 25 LKLLKEAVMFTA--EDEEYIQKAGEVLEDQVEEILDTWYGFVGSHPHLLYYFTSPDGTPNEKYLAAVRKRFSRWILDTSN 102 (195)
T ss_dssp HHHHHHHHTCCH--HHHHHHHHHHHHHGGGHHHHHHHHHHHHHTCHHHHGGGBCTTSSBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcChHHHHHhccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 444554444455 67789999999997766789999987654 4455533 2 389999999998887
Q ss_pred ch--hhhhhhHHHHHHHhhc------cC---ChhH-HHHHHhhhhhhhHHHHHHHhhhhhccCc-chhh---HHHHHHHH
Q 028959 76 KA--MEHSSILMPVLLAFLR------DG---DSGV-AGKSIVCGTNFFCRVLEEITMQFRWHGK-VERW---LEELWTWM 139 (201)
Q Consensus 76 ~~--~el~~~~v~~L~~LL~------D~---~~~V-vK~aI~~~t~lyr~~L~~~~~q~i~~~~-~~~~---~~~~W~~m 139 (201)
.. .+++....-.=.--.+ |. .+.| .+-.|.+...+...+. .++.++. .++. +-++|...
T Consensus 103 G~YD~~Yl~~r~rIGlvHvRI~k~~~dGV~~~~~i~~ry~ia~i~~i~~~i~-----~~l~~~~~~~~~~~~~~~A~~K~ 177 (195)
T 2veb_A 103 RSYDQAWLDYQYEIGLRHHRTKKNQTDNVESVPNIGYRYLVAFIYPITATMK-----PFLARKGHTPEEVEKMYQAWFKA 177 (195)
T ss_dssp SCCSHHHHHHHHHHHHHHSTTTTTTTTTCCCCSCCCHHHHHHTHHHHHHTTH-----HHHTSSSCCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHhcccccCCCCcccCCchHHHHHHHHHHHHHHH-----HHHHHhCCCHHHHHHHHHHHHHH
Confidence 44 5555555443333222 22 1223 4455666566655555 3333222 2333 55677666
Q ss_pred HHhHHHHHH
Q 028959 140 VRFKDAVFA 148 (201)
Q Consensus 140 ~~lK~~Il~ 148 (201)
..+--.+.+
T Consensus 178 ~~l~val~~ 186 (195)
T 2veb_A 178 TTLQVALWS 186 (195)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 666555544
No 113
>4dkc_A Interleukin-34, IL-34; dimeric four-helix bundle cytokine, activating CSF-1R, CSF-1 receptor, glycosylation, cytokine; HET: NAG BMA; 1.85A {Homo sapiens} PDB: 4dke_A* 4dkf_A* 4dkd_A* 4exp_A* 4exn_A*
Probab=30.74 E-value=1.2e+02 Score=24.47 Aligned_cols=71 Identities=23% Similarity=0.370 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhccCCCc--hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCC-------
Q 028959 26 LSSLKQVRGILSSADPS--LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD------- 96 (201)
Q Consensus 26 l~~L~q~~elll~~dp~--ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~------- 96 (201)
++....+||.|++.+|+ ++.|+-.=++.++. +..+.|..| .+.++..+|+.+.
T Consensus 82 l~a~e~Vq~VLlE~HPSwkYl~Ev~~Ll~~v~~-----------------~~~dve~~p-~ve~vlsll~~pg~~~KlVr 143 (190)
T 4dkc_A 82 LSATESVQDVLLEGHPSWKYLQEVETLLLNVQQ-----------------GLTDVEVSP-KVESVLSLLNAPGPNLKLVR 143 (190)
T ss_dssp HHHHHHHHTTCCTTSTTHHHHHHHHHHHHHHHH-----------------TTTTCCCCH-HHHHHHHHHHCSSCCCEEEC
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHh-----------------cccccccCc-hHHHHHHHhcCCCCCCcccC
Confidence 46678899999999999 55555444444432 446667777 4556666777432
Q ss_pred -hhHHHHHHhhhhhhhHHH
Q 028959 97 -SGVAGKSIVCGTNFFCRV 114 (201)
Q Consensus 97 -~~VvK~aI~~~t~lyr~~ 114 (201)
.+.+-.--..|--||+.+
T Consensus 144 PKALLDNCfRVMelLycsc 162 (190)
T 4dkc_A 144 PKALLDNCFRVMELLYCSC 162 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 233344444566666663
No 114
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=30.73 E-value=2.2e+02 Score=27.59 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=71.7
Q ss_pred hHHhhhHHHhhh----c---cCcchhHHHHHHHHHHHHhhchhhhh--------hhHHHHHHHhhccCChhHHHHHHhhh
Q 028959 43 LAAELFPYLVEL----Q---SSPESLVRKSLIETIEDIGLKAMEHS--------SILMPVLLAFLRDGDSGVAGKSIVCG 107 (201)
Q Consensus 43 ll~~fl~~il~f----~---~d~~~~VRk~v~~fiee~c~~~~el~--------~~~v~~L~~LL~D~~~~VvK~aI~~~ 107 (201)
+++++++.+++- . .+..+++|.-...|+..+.++.+..+ ..++.+...-+...++.+.|.+.++.
T Consensus 794 ~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l 873 (1049)
T 3m1i_C 794 GVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIA 873 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 455555555432 1 35789999999999999998765543 34455555566788899999999888
Q ss_pred hhhhHHHHHHHhhhhhccCcchhhHHHHHH-HHHHhHHHHHHHhcc-CCCCchhHHHHHhhhHhhhh
Q 028959 108 TNFFCRVLEEITMQFRWHGKVERWLEELWT-WMVRFKDAVFAIALE-PGLVGTKLLALKFLETHVLL 172 (201)
Q Consensus 108 t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~-~m~~lK~~Il~~~~~-s~n~GVr~~aiKF~E~vIL~ 172 (201)
..++...- ..+.. +....-.+ -...+=..++..+.| ....|.+.++-=+.+.+-++
T Consensus 874 ~~l~~~~~--------~~~~~-~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~~~ 931 (1049)
T 3m1i_C 874 LDLVKNIE--------RMGNV-PFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLV 931 (1049)
T ss_dssp HHHHHHHH--------HSCSC-HHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------hcCCh-HHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHHHHHHHHH
Confidence 77776543 11110 11111111 112344455555666 45578887777555544444
No 115
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=30.17 E-value=81 Score=29.46 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=44.3
Q ss_pred HhhhccCcchhHHHHHHHHHHHHhhchhh-----hhhhHHH-HHHHhhccCChhHHHHHHhhhhhh
Q 028959 51 LVELQSSPESLVRKSLIETIEDIGLKAME-----HSSILMP-VLLAFLRDGDSGVAGKSIVCGTNF 110 (201)
Q Consensus 51 il~f~~d~~~~VRk~v~~fiee~c~~~~e-----l~~~~v~-~L~~LL~D~~~~VvK~aI~~~t~l 110 (201)
+++--.++++..|.+.+.-|.++|. +++ +-..+|. .|..+|.|+++.|...|..+..||
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL 103 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVL 103 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4443457889999999999999996 432 2223454 467789999999999998888776
No 116
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=29.76 E-value=2.5e+02 Score=25.15 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=45.9
Q ss_pred HHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHH--HHHHHHhhch-h-hh---hhhHHHHHHHhhccCChhHH
Q 028959 28 SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLI--ETIEDIGLKA-M-EH---SSILMPVLLAFLRDGDSGVA 100 (201)
Q Consensus 28 ~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~--~fiee~c~~~-~-el---~~~~v~~L~~LL~D~~~~Vv 100 (201)
+|...--..++|||++...++.+++-+ .|-+.-.|.+. +.||+++..- + ++ ...+...|..-+..++-.|+
T Consensus 233 qL~ycv~qf~eKDp~L~~~vi~~LLk~--WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVA 310 (403)
T 3fga_B 233 QLAYCVVQFLEKDSTLTEPVVMALLKY--WPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVA 310 (403)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHh--CCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 444444445588999999999999865 44444555554 4445555422 2 22 22333334444556777888
Q ss_pred HHHHhhhh
Q 028959 101 GKSIVCGT 108 (201)
Q Consensus 101 K~aI~~~t 108 (201)
.||..-..
T Consensus 311 ErAL~~wn 318 (403)
T 3fga_B 311 ERALYYWN 318 (403)
T ss_dssp HHHHGGGG
T ss_pred HHHHHHhc
Confidence 88766543
No 117
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=29.13 E-value=1.2e+02 Score=27.32 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=79.6
Q ss_pred CChHHHHHHHHHHHHhhccCC---Cch--HHhhhHHHhhhccCcch----hHHHHHHHHHHHHhh---chhhhh-----h
Q 028959 20 GDLAVKLSSLKQVRGILSSAD---PSL--AAELFPYLVELQSSPES----LVRKSLIETIEDIGL---KAMEHS-----S 82 (201)
Q Consensus 20 ~d~~~Kl~~L~q~~elll~~d---p~l--l~~fl~~il~f~~d~~~----~VRk~v~~fiee~c~---~~~el~-----~ 82 (201)
++...+...+..+..|-.+.+ +.+ -...++.++.+..+.+. ++++-.+..|..++. ..++.. .
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence 455556666666776665321 222 24567777766544332 589988888887775 333322 2
Q ss_pred hHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHHHHHHHHHhHHHHHHHhccCCCCchhHHH
Q 028959 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLA 162 (201)
Q Consensus 83 ~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~~W~~m~~lK~~Il~~~~~s~n~GVr~~a 162 (201)
-.+|.|..+|++.+..|.+.|.-+..+|-. + .++......+ ...+ ..+++ ++.+++..+|-.|
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~-------------~-~~~~~~~i~~-~G~I-~~Lv~-LL~s~~~~v~~~A 441 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSA-------------R-NPKDQEALWD-MGAV-SMLKN-LIHSKHKMIAMGS 441 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHS-------------S-CHHHHHHHHH-HTHH-HHHHT-TTTCSSHHHHHHH
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHc-------------C-CHHHHHHHHH-CCCH-HHHHH-HHhCCCHHHHHHH
Confidence 468899999999999999998887777631 0 0011111111 1111 23444 5567888888888
Q ss_pred HHhhhHhh
Q 028959 163 LKFLETHV 170 (201)
Q Consensus 163 iKF~E~vI 170 (201)
..-+..+.
T Consensus 442 a~AL~nL~ 449 (458)
T 3nmz_A 442 AAALRNLM 449 (458)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666553
No 118
>4gl8_A Oligopeptide ABC transporter oppaiv; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Borrelia burgdorferi B31}
Probab=29.10 E-value=47 Score=29.59 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCC
Q 028959 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP 41 (201)
Q Consensus 7 ~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp 41 (201)
.++=+|+.+|..+.|.+++.+.++++++++.++|.
T Consensus 456 ~e~D~ll~~a~~~~D~~~R~~~~~~~q~~l~e~d~ 490 (529)
T 4gl8_A 456 SEYDELLIKSDNERDIFKRQEILKKAEAIIIERDF 490 (529)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCC
Confidence 46778999999999999999999999999987653
No 119
>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*
Probab=28.74 E-value=1.2e+02 Score=24.50 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHH
Q 028959 23 AVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIED 72 (201)
Q Consensus 23 ~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee 72 (201)
++.+..|+++.+.+++ ....+.+-++++.+.+...+++++. +++||++
T Consensus 211 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~f~~~ 258 (265)
T 4e6u_A 211 KNTIQGLREAYKLIFK-SGLTSVQAIDQIKSEILPSVPEAQL-LIDSLEQ 258 (265)
T ss_dssp HHHHHHHHHHHHHHHT-SCCCHHHHHHHHHHHTTTTCGGGHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCCCHHHHHHHHHhhhcCCCHHHHH-HHHHHhh
Confidence 4788899999999976 3446778888887744444556664 4788864
No 120
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.84 E-value=1.6e+02 Score=25.17 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhh
Q 028959 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL 75 (201)
Q Consensus 7 ~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~ 75 (201)
.++.++|++=-.++|..+=+..|+ |+ +.|.+.+.|+..++....|+...-|..+...+...|.
T Consensus 4 k~~~~ii~EYf~~~d~~Ea~~~l~---el---~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 4 KTLTPIIQEYFEHGDTNEVAEMLR---DL---NLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHH---TT---CCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH---Hh---CCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 466777888777788755555544 43 3688999999999999999999999999999998885
No 121
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=27.75 E-value=3.1e+02 Score=24.04 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhH-----HHhhhccCcchhHHHHHHHHHHHHhhc-h--hh
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFP-----YLVELQSSPESLVRKSLIETIEDIGLK-A--ME 79 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~-----~il~f~~d~~~~VRk~v~~fiee~c~~-~--~e 79 (201)
++.+++..-.+ ++..++...|..++.++. +|+.|..||+. .++....+.+......+..=+.++=-- + ..
T Consensus 119 ra~~iiekL~~-~~~~~lr~aLfsLk~~~q-~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 119 RVNAILEKLYS-SSGPELRRSLFSLKQIFQ-EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHHHHHHHHH-TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHhh-cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence 45555544443 566789999999999884 69999999974 455555555665554444333332110 0 00
Q ss_pred h--hhhHHHHHHHhhccCChhHHHHHHh
Q 028959 80 H--SSILMPVLLAFLRDGDSGVAGKSIV 105 (201)
Q Consensus 80 l--~~~~v~~L~~LL~D~~~~VvK~aI~ 105 (201)
. -+..|.-|..|+...++.|+|+|..
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~ 224 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALK 224 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHH
Confidence 1 2334555556666666777776654
No 122
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=27.58 E-value=1.3e+02 Score=21.92 Aligned_cols=32 Identities=0% Similarity=0.105 Sum_probs=18.9
Q ss_pred HHHHhhccCChhHHHHHHhhhhhhhHHHHHHH
Q 028959 87 VLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEI 118 (201)
Q Consensus 87 ~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~ 118 (201)
.+..+++.......|.++.-|..+|-.+..++
T Consensus 55 ~~~~l~~~~~~~~~~~al~dC~e~y~~a~~~L 86 (153)
T 1xg2_B 55 IIASLTNQATDPKLKGRYETCSENYADAIDSL 86 (153)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443323356777777777777777555
No 123
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=26.95 E-value=4.2e+02 Score=25.28 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHH-----hhhHHHhhh-c-cCcchhHHHHHHHHHHHHhhchh
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAA-----ELFPYLVEL-Q-SSPESLVRKSLIETIEDIGLKAM 78 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~-----~fl~~il~f-~-~d~~~~VRk~v~~fiee~c~~~~ 78 (201)
-+++++.++......| ..+.+.|+..-.-|.+ +.+.|| .++..||.+ . .+++..+.+--+.||...|..++
T Consensus 93 Yd~L~~~~~~~~~~~d-~~~~~~L~~~L~aLs~-~Vs~Ld~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~ 170 (649)
T 3tj1_A 93 IGIIANQVALPSKNPE-RINDKNLNILLDILSS-NINRIESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIP 170 (649)
T ss_dssp HHHHHHHHHSCTTCTT-SCCHHHHHHHHHHHHH-TGGGGCSGGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhcCCCcCcC-cCCHHHHHHHHHHHHh-hhhhcCchhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccH
Confidence 3455555553332222 1334444444333323 556664 577777777 5 56888899999999999999999
Q ss_pred hhhhhHHHHHHHhhccC
Q 028959 79 EHSSILMPVLLAFLRDG 95 (201)
Q Consensus 79 el~~~~v~~L~~LL~D~ 95 (201)
.++..|+..|..-+...
T Consensus 171 ~yl~~vl~mLV~~F~~~ 187 (649)
T 3tj1_A 171 KWWQDVSMILVSCFILP 187 (649)
T ss_dssp GGHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHhccCC
Confidence 99999988877776643
No 124
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=25.53 E-value=34 Score=28.31 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=32.3
Q ss_pred hhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhh
Q 028959 53 ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (201)
Q Consensus 53 ~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~ 107 (201)
.+..|++..||..+++-+ . .+.|..+++|+++.|-+.++...
T Consensus 153 ~l~~D~d~~VR~~aa~~l------~-------~~ll~~ll~D~d~~VR~aaa~~l 194 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKRL------P-------EESLGLMTQDPEPEVRRIVASRL 194 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS------C-------GGGGGGSTTCSSHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHcC------C-------HHHHHHHHcCCCHHHHHHHHHhC
Confidence 677999999999998841 1 13455688999999888888764
No 125
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=24.85 E-value=2.3e+02 Score=21.53 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcC---CChHHHHHHHHHHHHhhc
Q 028959 7 DQALSLLAAANNH---GDLAVKLSSLKQVRGILS 37 (201)
Q Consensus 7 ~~v~~lLn~A~~~---~d~~~Kl~~L~q~~elll 37 (201)
|.++.-|+.|..+ +|.++|-..|.++++++.
T Consensus 31 dgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~ 64 (145)
T 1vh6_A 31 NGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQ 64 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4556677777753 899999999999999884
No 126
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.58 E-value=2.1e+02 Score=24.32 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcc-hhHHHHHHHHHHHHhh
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPE-SLVRKSLIETIEDIGL 75 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~-~~VRk~v~~fiee~c~ 75 (201)
..++-++|.+=-.++|..+=+.++ +||- -|.+.++|+...+....+++ ..-|..+...+...++
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci---~EL~---~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCL---KELE---VPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWK 230 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHH---HHHC---CGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH---HHcC---CCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 446666777766667765544444 3432 47788888888888887775 5567777777776665
No 127
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=23.72 E-value=93 Score=21.64 Aligned_cols=59 Identities=8% Similarity=0.136 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcc-h-------hHHHHHHHHHHHHhhchhhhhhh
Q 028959 24 VKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPE-S-------LVRKSLIETIEDIGLKAMEHSSI 83 (201)
Q Consensus 24 ~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~-~-------~VRk~v~~fiee~c~~~~el~~~ 83 (201)
.=++.|+++++-..+ +|.-+.+|++-|-.|+..+- . --..-|.+=+.+..+.|++|+..
T Consensus 9 ~A~~yv~kVK~rF~~-~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~ 75 (85)
T 1e91_A 9 NAISYVNKIKTRFLD-HPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSE 75 (85)
T ss_dssp HHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHccCHHHHHH
Confidence 347889999988855 99999999999999985531 0 00122334444556667776543
No 128
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=23.69 E-value=66 Score=22.66 Aligned_cols=33 Identities=9% Similarity=0.272 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhccCCCchHHhhhHHHhhhccC
Q 028959 24 VKLSSLKQVRGILSSADPSLAAELFPYLVELQSS 57 (201)
Q Consensus 24 ~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d 57 (201)
.=+..++++++-..+ +|.-+.+|++-|-.|+..
T Consensus 12 ~A~~YvnkVK~rF~~-~p~~Y~~FL~IL~~y~~~ 44 (89)
T 1g1e_B 12 HAINYVNKIKNRFQG-QPDIYKAFLEILHTYQKE 44 (89)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHhc
Confidence 346789999988755 999999999999999754
No 129
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=23.55 E-value=3.6e+02 Score=23.34 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=66.5
Q ss_pred cCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhcc----CChhHHHHHHhhhhhhhHHHHHHHhhhhhccCc--ch
Q 028959 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD----GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK--VE 129 (201)
Q Consensus 56 ~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D----~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~--~~ 129 (201)
+.+++++-.-+++++...|.-.-+-+- +...+.| ..++++-+.-.-+..+|..+...+ ...+ .-
T Consensus 168 ~~~~~Dls~~~l~~L~~l~LAQAQE~~-----~~Kai~~~~~~~k~~liAkLa~~~~~~Y~~a~~~l-----~~~~~~~~ 237 (392)
T 1zb1_A 168 NSPSVDLQSENTRFLANICHAEAQELF-----VLKLLNDQISSKQYTLISKLSRATCNLFQKCHDFM-----KEIDDDVA 237 (392)
T ss_dssp CCSSGGGCHHHHHHHHHHHHHHHHHHH-----HHHHTTSTTGGGCHHHHHHHHHHHHHHHHHHHHHH-----HSCCCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHH-----HHHHHhccccCCchhHHHHHHHHHHHHHHHHHHHH-----hhcccccc
Confidence 456777777777777777775533221 1112232 246676666666788999999443 3332 11
Q ss_pred hhHHHHHHHHHHhHHHHHHH---------hccCCCCchhHHHHHhhhHhh
Q 028959 130 RWLEELWTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETHV 170 (201)
Q Consensus 130 ~~~~~~W~~m~~lK~~Il~~---------~~~s~n~GVr~~aiKF~E~vI 170 (201)
+.....|..+..+|...+.- ..+.+..|..+..++..+..+
T Consensus 238 ~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l 287 (392)
T 1zb1_A 238 IYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQL 287 (392)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 23468999999999976651 224688999999888776543
No 130
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.53 E-value=3e+02 Score=23.85 Aligned_cols=63 Identities=10% Similarity=0.158 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc-hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhc
Q 028959 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK 76 (201)
Q Consensus 8 ~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~-ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~ 76 (201)
++..+|.+--.++|..+=+.+++ |+ +-|+ +.++|+..++....|++..-|..++.++...+.+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~---eL---~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~ 77 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVR---EM---RAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQE 77 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHH---HH---TCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH---Hh---CCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHC
Confidence 45667777777788755555444 43 2575 7899999999999999999999999999888874
No 131
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=23.49 E-value=1.1e+02 Score=22.22 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=14.0
Q ss_pred HHHHHHhhhhhhhHHHH-HHH
Q 028959 99 VAGKSIVCGTNFFCRVL-EEI 118 (201)
Q Consensus 99 VvK~aI~~~t~lyr~~L-~~~ 118 (201)
-.|.++.-|..+|-.++ .++
T Consensus 68 ~~~~al~dC~e~y~~a~~~~L 88 (150)
T 2cj4_A 68 AWKGPLKNCAFSYKVILTASL 88 (150)
T ss_dssp GGHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888887776 354
No 132
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=23.02 E-value=5.3e+02 Score=25.79 Aligned_cols=103 Identities=9% Similarity=0.097 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhch-----hhh
Q 028959 7 DQALSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----MEH 80 (201)
Q Consensus 7 ~~v~~lLn~A~~~-~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~-----~el 80 (201)
+++.++|+.+... +|.+.|-+.-.+++++ .++|...... ..+|. ..+.+..||-|.+..++...+++ ++-
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~--~~~p~~~~~~-~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~ 86 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEF--KEKCPICVPC-GLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMSRLE 86 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHH--HHHCTTHHHH-HHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSCHHH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHH--HhCchHHHHH-HHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 4677888887765 5654565444444443 2244222111 11121 35667788888888888666543 222
Q ss_pred hhhHHHHHHHhhcc-------CChhHHHHHHhhhhhhhHH
Q 028959 81 SSILMPVLLAFLRD-------GDSGVAGKSIVCGTNFFCR 113 (201)
Q Consensus 81 ~~~~v~~L~~LL~D-------~~~~VvK~aI~~~t~lyr~ 113 (201)
-..+-..|..++.. +.+.|..+..++.+.|.+.
T Consensus 87 k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~ 126 (1204)
T 3a6p_A 87 KVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKR 126 (1204)
T ss_dssp HHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH
Confidence 23333333333331 3455555555555555443
No 133
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=22.34 E-value=2.6e+02 Score=21.17 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=42.9
Q ss_pred hhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhcc-CChhHHHHHHh
Q 028959 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD-GDSGVAGKSIV 105 (201)
Q Consensus 46 ~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D-~~~~VvK~aI~ 105 (201)
+++.+.+.-|.+.+ ++++.|-+.|++....-+.....++..+..-++. .||.+|.+.+.
T Consensus 85 ~iie~~~~~qlsd~-el~~iV~evi~~~~~~g~k~~G~vmG~vmk~~~GkAD~~~v~~lvk 144 (148)
T 1ng6_A 85 DILEVYLPEQLSEE-ELRTIVNETIAEVGASSKADMGKVMGAIMPKVKGKADGSLINKLVS 144 (148)
T ss_dssp HHHGGGSCCCCCHH-HHHHHHHHHHHHTTCCSGGGHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHhCcccCCHH-HHHHHHHHHHHHCcccCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35666555564444 9999999999988875577788888877777664 48888777654
No 134
>2w31_A Globin; oxygen transport, hexacoordination; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=22.22 E-value=2.3e+02 Score=20.68 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhccCCCchHHhhhHHHhh------hccCcc--hhHHHHHHHHHHHHhhch
Q 028959 24 VKLSSLKQVRGILSSADPSLAAELFPYLVE------LQSSPE--SLVRKSLIETIEDIGLKA 77 (201)
Q Consensus 24 ~Kl~~L~q~~elll~~dp~ll~~fl~~il~------f~~d~~--~~VRk~v~~fiee~c~~~ 77 (201)
+-++.|++.+.++-..-+.+.+.|++.++. +-.+.+ ..+|+....++..+|..+
T Consensus 16 ~d~~~l~~~~p~l~~~~~~i~~~FY~~l~~~pe~~~~f~~~~~~~~l~~~~~~~~~~l~~~~ 77 (162)
T 2w31_A 16 EDAELLGSLFPLAETNKERLADQFYDYLLGIPETAEFLKEDLVLQKLKQTHQDWFVSLFAGS 77 (162)
T ss_dssp HHHHHHHHTHHHHHHTHHHHHHHHHHHHHTSHHHHGGGSTHHHHCCHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCC
Confidence 578889999999977778899999988773 222332 335666777777777543
No 135
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=21.93 E-value=5.4e+02 Score=24.80 Aligned_cols=136 Identities=13% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCchHHhhhHHHh-hhc---cCcchhHHHHHHHHHHHHhhchhhhh
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLV-ELQ---SSPESLVRKSLIETIEDIGLKAMEHS 81 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ll~~fl~~il-~f~---~d~~~~VRk~v~~fiee~c~~~~el~ 81 (201)
++.+++.+=++..... .|+.....+=-++-.+.|.+-..++..++ .|+ ..++-..-|.++-||....-.+.=.-
T Consensus 46 r~~i~~~l~~~~~~~P--~Kt~vyAaLVgllN~k~pe~G~~lv~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~ 123 (771)
T 1h2v_C 46 KSKILRLLCTVARLLP--EKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 123 (771)
T ss_dssp HHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHhCC--CcchHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHhccCCeecH
Q ss_pred hhHHHHHHHhhc----cCChh---------HHHHHHhhhhhhhHH-------HHHHHhhhhhccCcch------------
Q 028959 82 SILMPVLLAFLR----DGDSG---------VAGKSIVCGTNFFCR-------VLEEITMQFRWHGKVE------------ 129 (201)
Q Consensus 82 ~~~v~~L~~LL~----D~~~~---------VvK~aI~~~t~lyr~-------~L~~~~~q~i~~~~~~------------ 129 (201)
..+++.|..|++ ++.|+ |+--.=-||..||-. +|+.+ +....++..
T Consensus 124 ~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~~~~~l~~lle~~--~~yl~~r~~~~~~ll~~~~~~ 201 (771)
T 1h2v_C 124 PSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT--ESYLKRRQKTHVPMLQVWTAD 201 (771)
T ss_dssp HHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTCCCTTHHHHCSBCCC
T ss_pred HHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHHhcCccchhhhhccccC
Q ss_pred ------hhHHHHHHHHHHhHHH
Q 028959 130 ------RWLEELWTWMVRFKDA 145 (201)
Q Consensus 130 ------~~~~~~W~~m~~lK~~ 145 (201)
+..+.+|+.+.+++.+
T Consensus 202 ~~~~~~~~l~~L~~ql~~lr~~ 223 (771)
T 1h2v_C 202 KPHPQEEYLDCLWAQIQKLKKD 223 (771)
T ss_dssp SSCCCCBHHHHHHHHHHHHHHT
T ss_pred CCCchhhHHHHHHHHHHHHHHC
No 136
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=21.92 E-value=3.2e+02 Score=22.16 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=64.9
Q ss_pred HHHHHHHHhhccCC--CchHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchhhhhhhHHHHHHHhhcc--CChhHHHH
Q 028959 27 SSLKQVRGILSSAD--PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD--GDSGVAGK 102 (201)
Q Consensus 27 ~~L~q~~elll~~d--p~ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~el~~~~v~~L~~LL~D--~~~~VvK~ 102 (201)
..+.++.+-+.+.. --.+|..+-.+++...|+++.+++ |+++-.+||.+..+++...+.-.-. ....=+++
T Consensus 7 ~~~~~l~~~i~~~~~~LP~lp~~~~~l~~~~~~~~~~~~~-----la~~I~~Dp~Ls~~lLr~aNS~~~~~~~~i~si~~ 81 (281)
T 3i7a_A 7 QLLVGLLKKLKDDALILPTLPEVAMRVQEVVGRPDSSLKQ-----VAEIIGQDAAISARIIKVANSALYSRGVPAENINS 81 (281)
T ss_dssp HHHHHHHHHHHTTCSCCCCCCHHHHHHHHHHTSTTCCHHH-----HHHHHHTCHHHHHHHHHHHHSTTTCSSSCCCSHHH
T ss_pred HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHcCCCCCHHH-----HHHHHHHCHHHHHHHHHHHhhHHhCCCCCCCCHHH
Confidence 34455555554432 225577778888888888877764 7788889999999999888874332 22333666
Q ss_pred HHhh--hhhhhHHHHHHHhhhhhccCc---chhhHHHHHHHHH
Q 028959 103 SIVC--GTNFFCRVLEEITMQFRWHGK---VERWLEELWTWMV 140 (201)
Q Consensus 103 aI~~--~t~lyr~~L~~~~~q~i~~~~---~~~~~~~~W~~m~ 140 (201)
||.- ..++...++.... +-...++ ........|..-.
T Consensus 82 Av~~LG~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~hs~ 123 (281)
T 3i7a_A 82 AVTRIGLTQIKSIATSVAM-EQLFISTNEMVWEVMDEVWRTSI 123 (281)
T ss_dssp HHHHHCTTTHHHHHHHHTT-GGGSCCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH-HHHhcCCchhHHHHHHHHHHHHH
Confidence 6653 3445555553332 3233222 2235677887644
No 137
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=21.91 E-value=1.9e+02 Score=21.62 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhcC---CChHHHHHHHHHHHHhhc
Q 028959 7 DQALSLLAAANNH---GDLAVKLSSLKQVRGILS 37 (201)
Q Consensus 7 ~~v~~lLn~A~~~---~d~~~Kl~~L~q~~elll 37 (201)
|.++.-|+.|..+ +|.++|-..+.++++++-
T Consensus 34 dgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~ 67 (131)
T 3iqc_A 34 EGILRFSSQAKRCIENEDIEKKIYYINRVTDIFT 67 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3455666666654 899999999999998874
No 138
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0
Probab=21.87 E-value=1.7e+02 Score=23.67 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhccCCCchHHhhhHHHhhhccCcchhHHHHHHHHHHH
Q 028959 24 VKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIED 72 (201)
Q Consensus 24 ~Kl~~L~q~~elll~~dp~ll~~fl~~il~f~~d~~~~VRk~v~~fiee 72 (201)
+.++.|+++.+.+.++ ..+.+-+..+.+.. ..++++ .+++||++
T Consensus 209 ~~~~~l~~~~~~l~~~--~~~~~~~~~~~~~~--~~~~~~-~~~~f~~~ 252 (266)
T 3r0s_A 209 DEVDRLSRAFKTLFRQ--GDLKENAKNLLENQ--ESENVK-KMCHFILE 252 (266)
T ss_dssp HHHHHHHHHHHHHHSS--SCHHHHHHHHHTTC--CCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc--CcHHHHHHHHHhhc--CCHHHH-HHHHHHHh
Confidence 6889999999999775 66777788877543 445665 55799964
No 139
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=21.79 E-value=3.9e+02 Score=23.08 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=67.9
Q ss_pred CcchhHHHHHHHHHHHHhhchhhhh--hhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhccCcchhhHHH
Q 028959 57 SPESLVRKSLIETIEDIGLKAMEHS--SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEE 134 (201)
Q Consensus 57 d~~~~VRk~v~~fiee~c~~~~el~--~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~~~~~~~~~~ 134 (201)
.++.++-.-+++++...|.-.-+-+ .+++ .....++++-|.-.-...+|..+.+.+ .+ .++....
T Consensus 172 ~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai------~~~~k~~liAKLa~q~~~~Y~~a~~~l-----~~--~~~~i~~ 238 (376)
T 3r9m_A 172 EKGRDLESRLIEAYVIQCQAEAQEVTIARAI------ELKHAPGLIAALAYETANFYQKADHTL-----SS--LEPAYSA 238 (376)
T ss_dssp CTTSTTSHHHHHHHHHHHHHHHHHHHHHHHH------HTTCCHHHHHHHHHHHHHHHHHHHHHH-----TT--SCHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHH------hcCCChHHHHHHHHHHHHHHHHHHHHH-----Hh--ccccccH
Confidence 4677788888888888888664322 2222 122356676666666779999999444 32 2345677
Q ss_pred HHHHHHHhHHHHHHHhc----------cCCCCchhHHHHHhhhHhh
Q 028959 135 LWTWMVRFKDAVFAIAL----------EPGLVGTKLLALKFLETHV 170 (201)
Q Consensus 135 ~W~~m~~lK~~Il~~~~----------~s~n~GVr~~aiKF~E~vI 170 (201)
.|..+..+|...+. .. +.+..|..+..++..+..+
T Consensus 239 ~W~~~v~~K~~~~~-A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l 283 (376)
T 3r9m_A 239 KWRKYLHLKMCFYT-AYAYCYHGETLLASDKCGEAIRSLQEAEKLY 283 (376)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 89999999987766 33 4688899888887766654
No 140
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=21.76 E-value=2.1e+02 Score=21.85 Aligned_cols=100 Identities=9% Similarity=-0.015 Sum_probs=58.0
Q ss_pred hhHHHhhhccCcchhHHHHHHHHHH-HHhhchhhhhhhHHHHHHHhhccCChhHHHHHHhhhhhhhHHHHHHHhhhhhcc
Q 028959 47 LFPYLVELQSSPESLVRKSLIETIE-DIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWH 125 (201)
Q Consensus 47 fl~~il~f~~d~~~~VRk~v~~fie-e~c~~~~el~~~~v~~L~~LL~D~~~~VvK~aI~~~t~lyr~~L~~~~~q~i~~ 125 (201)
.+.||.+...+.....-.-|.+||- ..-.+.+....|++..|.+|+....+.|+..+-.-.. +. +.|.+|...
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~-~I-----k~l~~F~g~ 104 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV-AV-----RNLFHYKGH 104 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH-HH-----HTTTTCCCC
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH-HH-----HHHHhcCCC
Confidence 3566666654443333345666666 4444557788999999999998888888777665553 22 223355553
Q ss_pred CcchhhHHHHHHHHHHhHHHHHHHhccC
Q 028959 126 GKVERWLEELWTWMVRFKDAVFAIALEP 153 (201)
Q Consensus 126 ~~~~~~~~~~W~~m~~lK~~Il~~~~~s 153 (201)
... -.-.+....+..--..+++++.+.
T Consensus 105 ~dp-~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 105 PDP-LKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp CCT-TTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred CCc-ccccchhHHHHHHHHHHHHHHhCc
Confidence 110 012345555666666666655443
No 141
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=21.41 E-value=1.3e+02 Score=22.57 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=40.0
Q ss_pred hHHhhhHHHhhhccCcchhHHHHHHHHHHHHhhchh--hhhhhHHHHHHHhhccC--------------ChhHHHHHHhh
Q 028959 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM--EHSSILMPVLLAFLRDG--------------DSGVAGKSIVC 106 (201)
Q Consensus 43 ll~~fl~~il~f~~d~~~~VRk~v~~fiee~c~~~~--el~~~~v~~L~~LL~D~--------------~~~VvK~aI~~ 106 (201)
..+++++-|+.+..... +..|++..|..++ .+..+ +.++.+|.+.- +..=+++.+..
T Consensus 29 ~~d~L~~AIl~l~~~ee------~~~fl~dL~T~~E~~aLs~R-~eV~klL~~G~syreIA~~~g~S~aTIsRv~r~L~~ 101 (119)
T 3kor_A 29 ALDELFDAILTLENREE------CYQFFDDLCTVNEIQSLSQR-LQVAKMIKQGYTYATIEQESGASTATISRVKRSLQW 101 (119)
T ss_dssp HHHHHHHHHHTCCSHHH------HHHHHHHHSCHHHHHHHHHH-HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHhCCHHH------HHHHHHHhCCchHHHHHHHH-HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44555555555543222 5667777776442 45555 66666655432 12226677777
Q ss_pred hhhhhHHHHHHH
Q 028959 107 GTNFFCRVLEEI 118 (201)
Q Consensus 107 ~t~lyr~~L~~~ 118 (201)
++.=|+.+|+++
T Consensus 102 g~~gy~~~L~rl 113 (119)
T 3kor_A 102 GNDAYTMILDRM 113 (119)
T ss_dssp SCSHHHHHHHHT
T ss_pred CChHHHHHHHHH
Confidence 778888888555
No 142
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=20.80 E-value=2.9e+02 Score=27.74 Aligned_cols=55 Identities=7% Similarity=0.054 Sum_probs=37.4
Q ss_pred CchHHhhhHHHhhhc---cCcchhHHHHHHHHHHHHhh---chhhhhhhHHHHHHHhhccC
Q 028959 41 PSLAAELFPYLVELQ---SSPESLVRKSLIETIEDIGL---KAMEHSSILMPVLLAFLRDG 95 (201)
Q Consensus 41 p~ll~~fl~~il~f~---~d~~~~VRk~v~~fiee~c~---~~~el~~~~v~~L~~LL~D~ 95 (201)
+++....++.+++.. ...++.+|...+..|+..+. .+|++++.++.-|...+.+.
T Consensus 524 ~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~ 584 (1204)
T 3a6p_A 524 EEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFE 584 (1204)
T ss_dssp TCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCC
T ss_pred ccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccC
Confidence 444334455555431 22466799999998875444 67999999999888777763
No 143
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein, ABC transport system; HET: GOL; 2.10A {Burkholderia pseudomallei}
Probab=20.67 E-value=1.1e+02 Score=27.02 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCC
Q 028959 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP 41 (201)
Q Consensus 7 ~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp 41 (201)
.++-+|+.+|..+.|.+++.+.++++++++.+.-|
T Consensus 434 ~~~d~ll~~a~~~~d~~~r~~~~~~~~~~l~~~~p 468 (506)
T 3zs6_A 434 PKVDSLVAEANQKLDDGARAALLTQAHDLAMNDYP 468 (506)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhcCC
Confidence 56788999999999999999999999999976544
No 144
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=20.42 E-value=1.1e+02 Score=27.18 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCc
Q 028959 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS 42 (201)
Q Consensus 6 ~~~v~~lLn~A~~~~d~~~Kl~~L~q~~elll~~dp~ 42 (201)
..++-+|+.+|..+.|.+++.+.++++++++.+.-|.
T Consensus 415 n~~~d~ll~~~~~~~d~~~r~~~~~~~~~~l~e~~p~ 451 (496)
T 3t66_A 415 DPELTGIIDELNRTVDQDVRAKLTEQAAAYIDEQKIH 451 (496)
T ss_dssp CHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCE
Confidence 3577889999999999999999999999999764443
Done!