BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028960
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 149 bits (377), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEE-ILTVDVKPGWKKGTRI 63
K+ PP+ + L +LEE+Y G TKK+KIS + ++ +G +I+ E+ ILT++VK GWK+GT+I
Sbjct: 9 KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI 68
Query: 64 TFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDG 123
TF ++G+ N PAD+VF++ +KPH++F RDG+D+I I+L EAL G V + TLDG
Sbjct: 69 TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG 128
Query: 124 RSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFP 168
R++ + +VI P VP EG+P+ P KRG+L I+F + FP
Sbjct: 129 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFP 173
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 149 bits (377), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEE-ILTVDVKPGWKKGTRI 63
K+ PP+ + L +LEE+Y G TKK+KIS + ++ +G +I+ E+ ILT++VK GWK+GT+I
Sbjct: 2 KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI 61
Query: 64 TFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDG 123
TF ++G+ N PAD+VF++ +KPH++F RDG+D+I I+L EAL G V + TLDG
Sbjct: 62 TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG 121
Query: 124 RSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFP 168
R++ + +VI P VP EG+P+ P KRG+L I+F + FP
Sbjct: 122 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFP 166
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 8 PPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEE-ILTVDVKPGWKKGTRITFE 66
PP+ + L +LEE+Y G TKK+KIS + ++ +G +I+ E+ ILT++VK GWK+GT+ITF
Sbjct: 3 PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 62
Query: 67 EKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSL 126
++G+ N PAD+VF++ +KPH++F RDG+D+I I+L EAL G V + TLDGR++
Sbjct: 63 KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 122
Query: 127 NIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFP 168
+ +VI P VP EG+P+ P KRG+L I+F + FP
Sbjct: 123 PVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFP 164
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 2/168 (1%)
Query: 14 LPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQ 73
L TLEELY G KKIK++R+ I E I+ V++KPGWK GT++T+ +G+ +
Sbjct: 10 LLVTLEELYLGKRKKIKVTRKRF-IEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQES 68
Query: 74 -NVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDN 132
P D+V I+ K H FTRD LI TI L AL G+ +TTLD R+L IPI
Sbjct: 69 PGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQIPIKE 128
Query: 133 VIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIK 180
+++P + VP EG PI+N+P ++G+L ++F+I FP SLT EQK IK
Sbjct: 129 IVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIK 176
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 10 IENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKG 69
++ LP +LE+L+ G K KI R+ +G + K + + + +KPGWK GT+IT++ +G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRK--GPHGASEKTQ--IDIQLKPGWKAGTKITYKNQG 58
Query: 70 NVQ-QNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNI 128
+ Q + + F++ EK H F RDG+DLI T ++ E+L G+ + T+DGR+L +
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118
Query: 129 PIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGI 179
+ P+ T P +GMP PS+RGNL +K+ + +P SL QK I
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 10 IENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKG 69
++ LP +LE+L+ G K KI R+ +G + K + + + +KPGWK GT+IT++ +G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRK--GPHGASEKTQ--IDIQLKPGWKAGTKITYKNQG 58
Query: 70 NVQ-QNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNI 128
+ Q + + F++ EK H F RDG+DLI T ++ E+L G+ + T+DGR+L +
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118
Query: 129 PIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGI 179
+ P+ T P +GMP PS+RGNL +K+ + +P SL QK I
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 5/141 (3%)
Query: 39 NGNTIKVE-EILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGN 97
NG ++ E +IL V V+PG K G RI F+ + + +V P DVVFIV E+PH F RDG+
Sbjct: 103 NGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGD 162
Query: 98 DLIVTRTITLGEALEGYPVRLTTLDGRSLNIPI--DNVIHPNYEETVPREGMPIQNEPSK 155
DL+ I L A+ G L + G L + I VI P + + +GMPI +
Sbjct: 163 DLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIP-KYGG 221
Query: 156 RGNLKIKFNIKFPPS-LTAEQ 175
GNL IKF IK P + T+E+
Sbjct: 222 YGNLIIKFTIKDPENHFTSEE 242
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 3 GPKKAPPIENRLPCTLEELYKGTTKKIKISREIV 36
GP++ I++ + +LEELYKG T K+ ++++I+
Sbjct: 7 GPQRGKDIKHEISASLEELYKGRTAKLALNKQIL 40
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 92 FTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPI--DNVIHPNYEETVPREGMPI 149
F RDG+DL+ I L A+ G L + G L + I VI P + + +GMPI
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 150 QNEPSKRGNLKIKFNIKFPPS-LTAEQKAGIKFLQLLNRCLP 190
GNL IKF IKFP + T+E+ L+ L LP
Sbjct: 62 PKY-GGYGNLIIKFTIKFPENHFTSEEN-----LKKLEEILP 97
>pdb|3RC7|A Chain A, Crystal Structure Of The Y186f Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 108 GEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNE 152
GE +EGYP L D ++ +P+ V+H + + R G + E
Sbjct: 75 GEPVEGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAE 119
>pdb|3RC9|A Chain A, Crystal Structure Of The K102a Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 108 GEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNE 152
GE +EGYP L D ++ +P+ V+H + + R G + E
Sbjct: 75 GEPVEGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAE 119
>pdb|3RBV|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp
pdb|3RC1|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp And
Tdp-Benzene
pdb|3RC2|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata In Complex With Tdp-Benzene And
Nadp; Open Conformation
Length = 350
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 108 GEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNE 152
GE +EGYP L D ++ +P+ V+H + + R G + E
Sbjct: 75 GEPVEGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAE 119
>pdb|1K20|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
pdb|1K20|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
Length = 310
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 7 APPIENRLPCTLEE-----LYKGTTKKIKISREIVDI-------NGNTIKVEEILTVDVK 54
AP + LEE L GT K + E++DI NGN ++V ++ TVD+
Sbjct: 167 APELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIA 226
Query: 55 PGWKKGTRI 63
++ I
Sbjct: 227 EVLERQAEI 235
>pdb|1WPP|A Chain A, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
pdb|1WPP|B Chain B, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
Length = 311
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 7 APPIENRLPCTLEE-----LYKGTTKKIKISREIVDI-------NGNTIKVEEILTVDVK 54
AP + LEE L GT K + E++DI NGN ++V ++ TVD+
Sbjct: 168 APELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIA 227
Query: 55 PGWKKGTRITFEEKGNVQQNVKPADVVFIVD 85
++ I + + N V+ I D
Sbjct: 228 EVLERQAEIEAAIEKAIADNGYSDFVLMITD 258
>pdb|3RCB|A Chain A, Crystal Structure Of The K102e Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 108 GEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNE 152
GE +EGYP L D ++ +P+ V+H + + R G + E
Sbjct: 75 GEPVEGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAE 119
>pdb|2ENX|A Chain A, Structure Of The Family Ii Inorganic Pyrophosphatase From
Streptococcus Agalactiae At 2.8 Resolution
pdb|2ENX|B Chain B, Structure Of The Family Ii Inorganic Pyrophosphatase From
Streptococcus Agalactiae At 2.8 Resolution
Length = 310
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 18 LEELYKGTTKKIKISREIVDI-------NGNTIKVEEILTVDV 53
LE L GT K + E++DI NG ++V ++ TVD+
Sbjct: 183 LEMLKAGTNLSSKTAAELIDIDAKTFELNGEAVRVAQVNTVDI 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,275,402
Number of Sequences: 62578
Number of extensions: 262202
Number of successful extensions: 619
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 29
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)