Query 028960
Match_columns 201
No_of_seqs 142 out of 1471
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:15:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 6.2E-46 1.3E-50 317.5 23.7 197 3-201 111-371 (371)
2 PRK14288 chaperone protein Dna 100.0 7.6E-44 1.6E-48 309.8 24.8 196 4-200 110-369 (369)
3 PRK14278 chaperone protein Dna 100.0 1.3E-42 2.9E-47 302.8 25.9 196 4-200 109-376 (378)
4 PRK14296 chaperone protein Dna 100.0 2.8E-42 6E-47 300.1 26.3 182 4-186 119-362 (372)
5 PTZ00037 DnaJ_C chaperone prot 100.0 1.5E-42 3.2E-47 305.2 24.6 182 4-185 120-366 (421)
6 PRK14277 chaperone protein Dna 100.0 3.2E-42 6.8E-47 301.3 25.9 194 4-199 125-385 (386)
7 PRK14280 chaperone protein Dna 100.0 3.7E-42 8E-47 300.0 26.0 195 4-200 113-374 (376)
8 PRK14298 chaperone protein Dna 100.0 3.7E-42 8.1E-47 299.8 26.0 195 4-200 111-376 (377)
9 PRK14281 chaperone protein Dna 100.0 3.3E-42 7.2E-47 302.0 25.3 193 5-199 134-396 (397)
10 PRK14284 chaperone protein Dna 100.0 3.5E-42 7.5E-47 301.5 25.1 196 4-200 128-387 (391)
11 PRK14297 chaperone protein Dna 100.0 5.9E-42 1.3E-46 299.2 26.0 195 4-200 118-380 (380)
12 PRK14301 chaperone protein Dna 100.0 3.7E-42 8.1E-47 299.5 23.8 194 4-200 114-364 (373)
13 PRK14287 chaperone protein Dna 100.0 1.3E-41 2.7E-46 296.1 26.4 195 4-200 108-369 (371)
14 PRK14286 chaperone protein Dna 100.0 2E-41 4.3E-46 294.9 26.4 183 4-187 120-359 (372)
15 PRK14300 chaperone protein Dna 100.0 2.3E-41 4.9E-46 294.6 26.2 194 5-199 116-371 (372)
16 PRK14295 chaperone protein Dna 100.0 2.1E-41 4.6E-46 296.1 25.5 181 4-186 136-373 (389)
17 PRK14276 chaperone protein Dna 100.0 2.9E-41 6.4E-46 294.7 25.3 195 4-200 116-378 (380)
18 PRK14294 chaperone protein Dna 100.0 6.6E-41 1.4E-45 291.3 24.5 194 4-200 114-364 (366)
19 PRK14279 chaperone protein Dna 100.0 9.9E-41 2.1E-45 292.2 25.3 192 4-199 143-391 (392)
20 PRK14285 chaperone protein Dna 100.0 2.1E-40 4.5E-45 287.9 25.9 183 4-187 116-355 (365)
21 PRK10767 chaperone protein Dna 100.0 1.5E-40 3.2E-45 289.6 24.7 194 4-199 112-370 (371)
22 PRK14289 chaperone protein Dna 100.0 7.2E-40 1.6E-44 286.6 24.3 194 4-199 124-385 (386)
23 PRK14282 chaperone protein Dna 100.0 1.7E-39 3.6E-44 282.7 26.3 182 4-186 122-364 (369)
24 PRK14291 chaperone protein Dna 100.0 1.8E-39 3.9E-44 283.6 25.7 182 4-186 126-371 (382)
25 PRK14283 chaperone protein Dna 100.0 3.8E-39 8.2E-44 281.3 25.6 195 4-200 116-377 (378)
26 PRK14292 chaperone protein Dna 100.0 2E-39 4.3E-44 282.6 23.7 194 4-200 109-369 (371)
27 PRK10266 curved DNA-binding pr 100.0 4.8E-39 1E-43 273.6 25.3 178 4-185 114-293 (306)
28 PRK14293 chaperone protein Dna 100.0 4.4E-39 9.5E-44 280.5 24.0 182 4-186 113-355 (374)
29 TIGR02349 DnaJ_bact chaperone 100.0 6.1E-39 1.3E-43 278.1 24.6 180 4-185 113-353 (354)
30 PRK14290 chaperone protein Dna 100.0 1.3E-38 2.7E-43 276.9 25.9 177 6-185 121-356 (365)
31 PRK14299 chaperone protein Dna 100.0 1.2E-38 2.7E-43 269.3 23.6 161 4-185 126-286 (291)
32 TIGR03835 termin_org_DnaJ term 100.0 5.1E-36 1.1E-40 272.1 21.9 157 7-167 656-813 (871)
33 KOG0712 Molecular chaperone (D 100.0 2.8E-31 6.2E-36 224.6 15.6 175 5-182 98-336 (337)
34 PF01556 CTDII: DnaJ C termina 99.9 1.3E-24 2.7E-29 150.7 8.9 81 98-178 1-81 (81)
35 PF01556 CTDII: DnaJ C termina 99.4 3.9E-12 8.5E-17 87.9 7.8 73 9-93 1-75 (81)
36 KOG0713 Molecular chaperone (D 99.3 4.2E-13 9.2E-18 113.2 0.8 170 4-173 123-328 (336)
37 PRK14282 chaperone protein Dna 99.3 4.4E-12 9.5E-17 110.8 7.0 86 5-102 273-359 (369)
38 PRK14290 chaperone protein Dna 99.2 1.8E-11 3.8E-16 106.9 6.8 85 5-102 267-352 (365)
39 PRK14294 chaperone protein Dna 99.2 2.5E-11 5.5E-16 105.9 6.9 85 5-102 261-346 (366)
40 PRK14285 chaperone protein Dna 99.2 2.3E-11 5E-16 106.2 6.5 85 5-101 263-348 (365)
41 PRK14299 chaperone protein Dna 99.2 2.8E-11 6.2E-16 102.6 5.9 83 5-100 198-280 (291)
42 PRK14298 chaperone protein Dna 99.2 3.7E-11 8E-16 105.3 6.2 86 5-103 262-348 (377)
43 PRK10767 chaperone protein Dna 99.2 4.4E-11 9.5E-16 104.6 6.5 86 5-103 259-345 (371)
44 PRK14284 chaperone protein Dna 99.2 6.7E-11 1.5E-15 104.1 7.2 85 5-101 275-361 (391)
45 PRK14287 chaperone protein Dna 99.1 8.7E-11 1.9E-15 102.7 6.4 84 5-101 259-343 (371)
46 PRK14300 chaperone protein Dna 99.1 2.8E-10 6E-15 99.6 9.2 83 5-99 262-345 (372)
47 PRK14288 chaperone protein Dna 99.1 2.7E-10 5.8E-15 99.6 8.9 83 5-99 255-338 (369)
48 PRK14301 chaperone protein Dna 99.1 1.3E-10 2.8E-15 101.7 6.9 84 5-101 261-345 (373)
49 TIGR02349 DnaJ_bact chaperone 99.1 1.3E-10 2.9E-15 101.0 6.7 82 5-99 264-346 (354)
50 PRK14279 chaperone protein Dna 99.1 3.9E-10 8.5E-15 99.3 9.2 79 5-96 290-368 (392)
51 PRK14295 chaperone protein Dna 99.1 4.6E-10 1E-14 98.7 9.2 80 5-96 283-362 (389)
52 PRK14286 chaperone protein Dna 99.1 2.3E-10 5E-15 100.1 6.8 83 5-99 267-350 (372)
53 PRK14291 chaperone protein Dna 99.1 6.9E-10 1.5E-14 97.5 9.6 74 5-90 272-346 (382)
54 PRK14276 chaperone protein Dna 99.0 7.9E-10 1.7E-14 97.0 9.0 79 5-96 267-346 (380)
55 PRK14293 chaperone protein Dna 99.0 2.6E-10 5.5E-15 99.9 5.5 85 5-102 264-350 (374)
56 PRK14281 chaperone protein Dna 99.0 1E-09 2.2E-14 96.8 9.1 79 5-96 283-362 (397)
57 PRK14280 chaperone protein Dna 99.0 1.1E-09 2.4E-14 96.0 9.2 79 5-96 264-343 (376)
58 COG0484 DnaJ DnaJ-class molecu 99.0 3.9E-10 8.4E-15 97.5 5.8 83 5-100 261-344 (371)
59 PRK10266 curved DNA-binding pr 99.0 1.4E-09 3E-14 92.9 8.6 77 5-95 206-282 (306)
60 PRK14297 chaperone protein Dna 99.0 1.4E-09 3.1E-14 95.4 8.8 79 5-96 269-348 (380)
61 PRK14278 chaperone protein Dna 99.0 2E-09 4.3E-14 94.4 9.3 80 5-96 260-340 (378)
62 PRK14292 chaperone protein Dna 99.0 7E-10 1.5E-14 97.1 5.7 83 5-100 259-342 (371)
63 PRK14277 chaperone protein Dna 99.0 2.7E-09 5.9E-14 93.8 9.0 79 5-96 276-355 (386)
64 PTZ00037 DnaJ_C chaperone prot 98.9 3.4E-09 7.3E-14 94.0 8.3 80 5-96 271-356 (421)
65 PRK14283 chaperone protein Dna 98.9 4.9E-09 1.1E-13 92.0 9.1 78 5-95 267-345 (378)
66 PRK14296 chaperone protein Dna 98.9 4.6E-09 1E-13 91.9 8.7 77 7-96 273-351 (372)
67 PRK14289 chaperone protein Dna 98.9 6.4E-09 1.4E-13 91.5 8.6 77 5-94 275-352 (386)
68 TIGR03835 termin_org_DnaJ term 98.8 1E-08 2.3E-13 94.9 8.1 70 5-87 743-812 (871)
69 KOG0714 Molecular chaperone (D 98.6 2.6E-07 5.7E-12 76.9 10.0 142 8-149 160-305 (306)
70 KOG0715 Molecular chaperone (D 98.2 2.7E-06 5.9E-11 72.1 6.3 95 7-108 137-287 (288)
71 KOG0712 Molecular chaperone (D 97.9 4.3E-05 9.3E-10 65.6 7.2 75 4-90 248-324 (337)
72 COG2214 CbpA DnaJ-class molecu 90.8 0.89 1.9E-05 35.6 6.4 78 9-99 150-227 (237)
73 PF12991 DUF3875: Domain of un 60.1 12 0.00026 23.6 2.7 22 154-175 25-48 (54)
74 KOG0315 G-protein beta subunit 58.2 11 0.00025 31.5 3.1 42 102-143 19-66 (311)
75 cd02639 R3H_RRM R3H domain of 57.6 17 0.00037 23.4 3.3 24 162-185 17-40 (60)
76 COG2214 CbpA DnaJ-class molecu 48.6 72 0.0016 24.5 6.4 72 98-172 150-221 (237)
77 PF12791 RsgI_N: Anti-sigma fa 46.7 52 0.0011 20.3 4.2 36 113-148 5-40 (56)
78 TIGR02642 phage_xxxx uncharact 40.8 30 0.00066 27.5 3.0 42 24-67 107-150 (186)
79 PF09285 Elong-fact-P_C: Elong 40.1 46 0.001 21.1 3.2 20 49-68 30-49 (56)
80 cd06007 R3H_DEXH_helicase R3H 40.1 47 0.001 21.2 3.2 24 163-186 17-40 (59)
81 PF00046 Homeobox: Homeobox do 39.0 14 0.00031 22.6 0.7 18 170-187 6-23 (57)
82 cd02641 R3H_Smubp-2_like R3H d 37.5 49 0.0011 21.1 3.1 24 164-187 19-42 (60)
83 smart00841 Elong-fact-P_C Elon 36.9 51 0.0011 20.9 3.0 20 49-68 30-49 (56)
84 cd02640 R3H_NRF R3H domain of 36.0 57 0.0012 20.9 3.2 24 163-186 18-41 (60)
85 KOG2724 Nuclear pore complex c 35.0 62 0.0013 29.2 4.2 84 79-164 370-455 (487)
86 cd05794 S1_EF-P_repeat_2 S1_EF 33.6 60 0.0013 20.6 2.9 20 49-68 30-49 (56)
87 TIGR01565 homeo_ZF_HD homeobox 33.2 72 0.0016 20.3 3.3 32 170-201 7-55 (58)
88 PF01333 Apocytochr_F_C: Apocy 32.7 50 0.0011 24.2 2.7 55 112-169 22-82 (118)
89 smart00276 GLECT Galectin. Gal 31.7 76 0.0016 23.1 3.7 22 50-71 2-23 (128)
90 PF11239 DUF3040: Protein of u 30.5 54 0.0012 22.1 2.5 23 171-193 3-26 (82)
91 KOG0715 Molecular chaperone (D 30.0 68 0.0015 27.3 3.6 40 124-172 233-272 (288)
92 KOG0713 Molecular chaperone (D 29.9 5.1 0.00011 34.7 -3.2 78 4-93 247-326 (336)
93 PF02426 MIase: Muconolactone 27.9 1.2E+02 0.0026 21.2 4.0 24 159-182 3-26 (91)
94 COG5435 Uncharacterized conser 26.8 1.4E+02 0.003 22.9 4.4 31 154-184 107-137 (147)
95 TIGR03221 muco_delta muconolac 25.4 1.4E+02 0.0031 20.8 3.9 24 159-182 2-25 (90)
96 PF02963 EcoRI: Restriction en 24.1 32 0.00069 28.0 0.5 37 115-151 162-199 (257)
97 PF08774 VRR_NUC: VRR-NUC doma 23.6 1.4E+02 0.0029 20.6 3.7 27 159-185 62-89 (100)
98 PF12683 DUF3798: Protein of u 23.5 41 0.00088 28.4 1.1 43 156-199 29-86 (275)
99 PF03803 Scramblase: Scramblas 23.0 85 0.0018 25.0 2.9 19 162-180 190-208 (221)
100 smart00389 HOX Homeodomain. DN 22.7 53 0.0011 19.7 1.3 17 171-187 7-23 (56)
101 PRK13263 ureE urease accessory 22.5 4.2E+02 0.0091 21.4 8.1 64 10-97 21-86 (206)
102 PF08758 Cadherin_pro: Cadheri 21.9 2.6E+02 0.0056 19.3 4.8 74 46-125 8-82 (90)
103 cd01491 Ube1_repeat1 Ubiquitin 21.0 2.8E+02 0.0062 23.5 5.7 59 53-114 185-253 (286)
104 PF02736 Myosin_N: Myosin N-te 20.8 1.9E+02 0.0041 16.8 3.5 32 95-129 8-39 (42)
105 PRK12426 elongation factor P; 20.7 1.6E+02 0.0035 23.4 3.9 21 48-68 157-177 (185)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-46 Score=317.46 Aligned_cols=197 Identities=26% Similarity=0.436 Sum_probs=181.4
Q ss_pred CCCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c--------------------
Q 028960 3 GPKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N-------------------- 41 (201)
Q Consensus 3 ~p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~-------------------- 41 (201)
+|++|.|+.+.|+|||+|||+|+++.|.+.+...| |+| .
T Consensus 111 ~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~ 190 (371)
T COG0484 111 RPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCN 190 (371)
T ss_pred CcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCc
Confidence 47799999999999999999999999999999876 222 0
Q ss_pred -----------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEEE
Q 028960 42 -----------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVTR 103 (201)
Q Consensus 42 -----------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~~ 103 (201)
++.+.++++|+||+|+.+|++|+++|+|++.+++ .+|||||.|.+++|+.|.|+|+|||+++
T Consensus 191 G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~ 270 (371)
T COG0484 191 GTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEV 270 (371)
T ss_pred cceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEecc
Confidence 6889999999999999999999999999998866 6899999999999999999999999999
Q ss_pred EeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHH
Q 028960 104 TITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQ 183 (201)
Q Consensus 104 ~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~ 183 (201)
+|++.+|++|++++|+|+||+ ++|+||+++++|++++|+|+|||..+ +..+|||||++.|++|++|+.+|+++|++++
T Consensus 271 ~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq~G~~~rl~gkG~p~~~-~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~ 348 (371)
T COG0484 271 PISFTEAALGGEIEVPTLDGR-VKLKIPAGTQTGEVFRLRGKGMPKLR-SGGRGDLYVRVKVETPKNLSDEQKELLEEFA 348 (371)
T ss_pred ccCHHHHhcCCEEEEEecCCC-EEEecCCCCccCcEEEEcCCCccccC-CCCcCCEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999999866 4668999999999999999999999999999
Q ss_pred hhcC-----CCCcchhccccCCC
Q 028960 184 LLNR-----CLPCFGLFRSWSPN 201 (201)
Q Consensus 184 ~~~~-----~~~~~~~~~~~~~~ 201 (201)
+... +..+|+++++||.+
T Consensus 349 ~~~~~~~~~~~~~~~k~k~~f~~ 371 (371)
T COG0484 349 KSLGEGPEQSPGFFDKLKNFFKG 371 (371)
T ss_pred HhhccccccChhhhHHhHhhccC
Confidence 9642 12699999999864
No 2
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.6e-44 Score=309.76 Aligned_cols=196 Identities=22% Similarity=0.331 Sum_probs=176.1
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC--------------------------------------c
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING--------------------------------------N 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G--------------------------------------~ 41 (201)
|++|+|+.+++.|||+|+|+|++++|.+.|.+.| |+| +
T Consensus 110 ~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 189 (369)
T PRK14288 110 SSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGK 189 (369)
T ss_pred CCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCce
Confidence 4689999999999999999999999999887654 211 1
Q ss_pred -------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEEEecCCCceEEeCCceEEEEEeCHH
Q 028960 42 -------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLG 108 (201)
Q Consensus 42 -------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~~~ 108 (201)
++.+.++++|.||+|+++|++|+++|+|++.+++.+|||+|+|++.+|+.|+|+|+||+++++||+.
T Consensus 190 ~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~ 269 (369)
T PRK14288 190 IIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFT 269 (369)
T ss_pred EccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHH
Confidence 4567789999999999999999999999987777899999999999999999999999999999999
Q ss_pred HHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHhhcC-
Q 028960 109 EALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLNR- 187 (201)
Q Consensus 109 ~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~~~- 187 (201)
+||+|+++.|+|+||+.++|++|+++++|++++|+|+|||..+ +..+|||||+|+|.+|+.|+++|+++|+++++...
T Consensus 270 eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~~~ 348 (369)
T PRK14288 270 TIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKHPE-SSYRGSLIVELQVIYPKSLNKEQQELLEKLHASFGY 348 (369)
T ss_pred HHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcCc
Confidence 9999999999999998899999999999999999999999765 34689999999999999999999999999987521
Q ss_pred -----C---CCcchhccccCC
Q 028960 188 -----C---LPCFGLFRSWSP 200 (201)
Q Consensus 188 -----~---~~~~~~~~~~~~ 200 (201)
. .++|+.+++|+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~ 369 (369)
T PRK14288 349 EGEPHKSVLETCISKIKDWFK 369 (369)
T ss_pred ccCccccchhhHHHHHHHhhC
Confidence 1 467888888973
No 3
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-42 Score=302.83 Aligned_cols=196 Identities=25% Similarity=0.353 Sum_probs=174.6
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cC-----------------Cc---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----IN-----------------GN--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~-----------------G~--------------------- 41 (201)
|++|.|+.+.++|||+|+|+|+++++.+.+.+.| |+ |.
T Consensus 109 ~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 188 (378)
T PRK14278 109 VRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTC 188 (378)
T ss_pred CCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCC
Confidence 4589999999999999999999999999887654 21 11
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.++++|.||+|+++|++|+++|+|++.+++ .+|||+|+|++++|+.|+|+|+||+++
T Consensus 189 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~ 268 (378)
T PRK14278 189 RGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCT 268 (378)
T ss_pred CccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEE
Confidence 2455689999999999999999999999988765 679999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
++|++.+|++|+++.|+|+|+..+.|+||+++++|++++|+|+|||..+ .+.+|||||+|+|.||+.||++|+++|+++
T Consensus 269 ~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~ 347 (378)
T PRK14278 269 VSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLR-SGGRGDLHAHVEVVVPTRLDHEDIELLREL 347 (378)
T ss_pred EecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999999999999999766799999999999999999999999765 357899999999999999999999999999
Q ss_pred HhhcC-----------CCCcchhccccCC
Q 028960 183 QLLNR-----------CLPCFGLFRSWSP 200 (201)
Q Consensus 183 ~~~~~-----------~~~~~~~~~~~~~ 200 (201)
+++.. ...+|+++++||.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (378)
T PRK14278 348 KALRGREVAEVRSTHAQGGLFSRLRETFT 376 (378)
T ss_pred HhhcCccccccccCcccccHHHHHHHHhc
Confidence 86431 2478888899986
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.8e-42 Score=300.14 Aligned_cols=182 Identities=24% Similarity=0.312 Sum_probs=164.2
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cC-----------------Cc---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----IN-----------------GN--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~-----------------G~--------------------- 41 (201)
|++|+|+.+.+.|||+|||+|++++|.+.+.+.| |+ |.
T Consensus 119 ~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C 198 (372)
T PRK14296 119 STKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVC 198 (372)
T ss_pred cCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCc
Confidence 5689999999999999999999999999887654 21 11
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCC-CCCCeeEEEEEEecCCCceEEe-CCceEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQ-NVKPADVVFIVDEKPHSVFTRD-GNDLIV 101 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~-~~~~GDl~v~i~v~~~~~f~r~-g~dL~~ 101 (201)
++.+.++++|.||+|+++|++|+++|+|++.+ ++.+|||+|+|++.+|+.|+|+ |+||++
T Consensus 199 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~ 278 (372)
T PRK14296 199 NGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILM 278 (372)
T ss_pred CCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEE
Confidence 23456889999999999999999999999875 4478999999999999999995 899999
Q ss_pred EEEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHH
Q 028960 102 TRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKF 181 (201)
Q Consensus 102 ~~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~ 181 (201)
+++||+.+||+|+++.|+|+||+ ++|++|+++++|++++|+|+|||...+++.+|||||+|+|.||+.||++|+++|++
T Consensus 279 ~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~ 357 (372)
T PRK14296 279 TYNISYLDAILGNEIIIKTLDGD-IKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQ 357 (372)
T ss_pred EEecCHHHHhCCCEEEeeCCCCC-EEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999998 99999999999999999999999654456799999999999999999999999999
Q ss_pred HHhhc
Q 028960 182 LQLLN 186 (201)
Q Consensus 182 ~~~~~ 186 (201)
++++.
T Consensus 358 l~~~~ 362 (372)
T PRK14296 358 IYEQT 362 (372)
T ss_pred HHhhc
Confidence 98763
No 5
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=305.16 Aligned_cols=182 Identities=36% Similarity=0.614 Sum_probs=165.8
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----c----------------CC-----------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----I----------------NG----------------------- 40 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g----------------~G----------------------- 40 (201)
+++|+|+.+.+.|||+|+|+|+++++.+.+.+.| | +|
T Consensus 120 ~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~ 199 (421)
T PTZ00037 120 KKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCN 199 (421)
T ss_pred ccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCC
Confidence 5689999999999999999999999999877554 1 12
Q ss_pred ---c---------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 41 ---N---------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 41 ---~---------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
+ ++.+.++++|.||+|+.+|++|+|+|+|++.+++.+|||+|+|++++|+.|+|+|+||+++
T Consensus 200 G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~ 279 (421)
T PTZ00037 200 GQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFIT 279 (421)
T ss_pred CcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEE
Confidence 1 2445688999999999999999999999998877899999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCc--cCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECC--CCCCHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNV--IHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFP--PSLTAEQKAG 178 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~--~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P--~~l~~~~~~~ 178 (201)
++|+|.+||+|+++.|+|+||+.+.|++|++ +++|++++|+|+|||..++++.+|||||+|+|.|| ..||++|+++
T Consensus 280 ~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~l 359 (421)
T PTZ00037 280 KKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEI 359 (421)
T ss_pred EeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHH
Confidence 9999999999999999999998899999976 99999999999999986645679999999999999 9999999999
Q ss_pred HHHHHhh
Q 028960 179 IKFLQLL 185 (201)
Q Consensus 179 l~~~~~~ 185 (201)
|++++..
T Consensus 360 l~~l~~~ 366 (421)
T PTZ00037 360 LKSLFPQ 366 (421)
T ss_pred HHHhccC
Confidence 9999864
No 6
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-42 Score=301.31 Aligned_cols=194 Identities=25% Similarity=0.377 Sum_probs=173.6
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------- 41 (201)
|++|+|+.+.++|||+|+|+|++++|.+.|.+.| |+| .
T Consensus 125 ~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 204 (386)
T PRK14277 125 PQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRC 204 (386)
T ss_pred CCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCC
Confidence 5689999999999999999999999999988765 221 0
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.++++|.||+|+++|++++++|+|++.+.+ .+|||+|+|++++|+.|+|+|+||+++
T Consensus 205 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~ 284 (386)
T PRK14277 205 HGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLE 284 (386)
T ss_pred CcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEE
Confidence 3456688999999999999999999999986544 689999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
++|++.+|++|+++.|+|+||+ +.|.+|+++++|++++|+|+|||..+ .+.+|||||+|+|.||+.|+++|+++|+++
T Consensus 285 ~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~ri~g~G~p~~~-~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l 362 (386)
T PRK14277 285 MPITFTDAALGGEIEIPTLDGK-VKFTIPEGTQTGTKFRLRGKGIPHLR-GRGRGDQIVKVYIEVPKKLTEKQKELLREF 362 (386)
T ss_pred EEcCHHHHhCCCEEEEEcCCCC-EEEEECCCCCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 9999999999999999999998 89999999999999999999999765 356899999999999999999999999999
Q ss_pred HhhcC------CCCcchhccccC
Q 028960 183 QLLNR------CLPCFGLFRSWS 199 (201)
Q Consensus 183 ~~~~~------~~~~~~~~~~~~ 199 (201)
+++.. ...+++++++|+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~ 385 (386)
T PRK14277 363 EKLSGEEGTESRKSFFQRMKDAF 385 (386)
T ss_pred HhhcccccCcccccHHHHHHHhh
Confidence 87533 236788889897
No 7
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-42 Score=299.97 Aligned_cols=195 Identities=21% Similarity=0.342 Sum_probs=174.2
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------- 41 (201)
|++|+|+.+.++|||+|+|+|++++|.+.|.+.| |+| .
T Consensus 113 ~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (376)
T PRK14280 113 PRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHC 192 (376)
T ss_pred cccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCC
Confidence 4689999999999999999999999999988765 221 0
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.++++|.||+|+++|++++++|+|++.+.+ .+|||+|+|++.+|+.|+|+|+||+++
T Consensus 193 ~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~ 272 (376)
T PRK14280 193 NGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCE 272 (376)
T ss_pred CCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEE
Confidence 3456789999999999999999999999987654 789999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
++||+.+|++|+++.|+|+||+ +.|+||+++++|++++|+|+|||... .+.+|||||+|+|.+|+.||++|+++|+++
T Consensus 273 ~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l 350 (376)
T PRK14280 273 MPLTFAQAALGDEIEVPTLHGK-VKLKIPAGTQTGTQFRLKGKGVPNVR-GYGQGDQYVVVRVVTPTKLTDRQKELLREF 350 (376)
T ss_pred EecCHHHHhCCCEEEEecCCce-EEEEECCCCCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999996 89999999999999999999999764 356899999999999999999999999999
Q ss_pred HhhcC------CCCcchhccccCC
Q 028960 183 QLLNR------CLPCFGLFRSWSP 200 (201)
Q Consensus 183 ~~~~~------~~~~~~~~~~~~~ 200 (201)
+++.. ..++|.++++|+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~ 374 (376)
T PRK14280 351 AELSGEEIDEQPSSFFDKAKRAFK 374 (376)
T ss_pred HhhcccccCcccccHHHHHHHHhc
Confidence 87532 2367888888874
No 8
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-42 Score=299.80 Aligned_cols=195 Identities=24% Similarity=0.342 Sum_probs=174.3
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cC-----------------Cc---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----IN-----------------GN--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~-----------------G~--------------------- 41 (201)
|++|.|+.++++|||+|+|+|++++|.+.+.+.| |+ |.
T Consensus 111 ~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 190 (377)
T PRK14298 111 PRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTC 190 (377)
T ss_pred CCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCC
Confidence 5689999999999999999999999999887655 21 21
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCC-CCCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQN-VKPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.++++|.||+|+++|++|+++|+|++.+. +.+|||+|+|++.+|+.|+|+|+||+++
T Consensus 191 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~ 270 (377)
T PRK14298 191 HGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISE 270 (377)
T ss_pred CCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEE
Confidence 345668999999999999999999999998654 4789999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
++|++.+|++|+++.|+|+||+ +.|+||+++++|++++|+|+|||..+ .+.+|||||+|+|.+|+.|+.+|+++|+++
T Consensus 271 ~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g~~~g~~lri~g~G~p~~~-~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 271 IPISFTQAALGADIMVPTLYGK-VKMNIPPGTQTHSVFRLKDKGMPRLH-GHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred EEeCHHHHhCCCeEEEecCCCC-EEEEeCCCcccCCEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999997 89999999999999999999999765 356899999999999999999999999999
Q ss_pred HhhcC----------CCCcchhccccCC
Q 028960 183 QLLNR----------CLPCFGLFRSWSP 200 (201)
Q Consensus 183 ~~~~~----------~~~~~~~~~~~~~ 200 (201)
+++.. .+++|+++++|+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (377)
T PRK14298 349 DELSNGKNPSKAGKKKKGIFDKVKDAFE 376 (377)
T ss_pred HhhcccccccccCcccccHHHHHHHHhc
Confidence 87531 2468888888975
No 9
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-42 Score=302.04 Aligned_cols=193 Identities=26% Similarity=0.418 Sum_probs=172.4
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cC----------------Cc-----------------------
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVD----IN----------------GN----------------------- 41 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~----------------G~----------------------- 41 (201)
++|+|+.+.++|||+|+|+|++++|.+.+.+.| |+ |.
T Consensus 134 ~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 213 (397)
T PRK14281 134 IPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGG 213 (397)
T ss_pred CCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcc
Confidence 468999999999999999999999999888765 21 11
Q ss_pred ----------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEEEE
Q 028960 42 ----------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVTRT 104 (201)
Q Consensus 42 ----------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~~~ 104 (201)
++.+.++++|.||+|+++|++|+++|+|++.+.+ .+|||+|+|++++|+.|+|+|+||+++++
T Consensus 214 ~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~ 293 (397)
T PRK14281 214 EGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLA 293 (397)
T ss_pred eeeeeCCCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEE
Confidence 2345678999999999999999999999998754 78999999999999999999999999999
Q ss_pred eCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHh
Q 028960 105 ITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQL 184 (201)
Q Consensus 105 i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~ 184 (201)
|++.+|++|++++|+|+||+ +.|+||+++++|++++|+|+|||..+ .+.+|||||+|+|.||+.||++|+++|+++++
T Consensus 294 Isl~eAl~G~~~~i~tldg~-i~v~ip~g~~~G~~~ri~g~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~ 371 (397)
T PRK14281 294 VSYPDLVLGTKVEVPTLDGA-VKLTIPAGTQPETMLRIPGKGIGHLR-GSGRGDQYVRVNVFVPKEVSHQDKELLKELKK 371 (397)
T ss_pred ecHHHHhcCCeEEeecCCcc-EEEEeCCccCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999997 89999999999999999999999765 35789999999999999999999999999986
Q ss_pred hc----------CCCCcchhccccC
Q 028960 185 LN----------RCLPCFGLFRSWS 199 (201)
Q Consensus 185 ~~----------~~~~~~~~~~~~~ 199 (201)
.. ..+.+|.++++|+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (397)
T PRK14281 372 SSHISPNAHNDKEEKSFFEKAKDIF 396 (397)
T ss_pred hcccccccccCcccccHHHHHHHhh
Confidence 41 1247888888886
No 10
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.5e-42 Score=301.49 Aligned_cols=196 Identities=23% Similarity=0.357 Sum_probs=175.1
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC---------------------------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING--------------------------------------- 40 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G--------------------------------------- 40 (201)
|++|.|+.+.|.|||+|+|+|+++++.+.+.+.| |+|
T Consensus 128 ~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G 207 (391)
T PRK14284 128 ARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEG 207 (391)
T ss_pred cCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCC
Confidence 4679999999999999999999999999887654 211
Q ss_pred c-------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEEEEeC
Q 028960 41 N-------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVTRTIT 106 (201)
Q Consensus 41 ~-------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~ 106 (201)
+ ++.+.++++|.||+|+.+|++|+++|+|++.+++ .+|||+|+|++++|+.|+|+|+||+++++||
T Consensus 208 ~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Is 287 (391)
T PRK14284 208 RVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIG 287 (391)
T ss_pred cccCCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEec
Confidence 0 3456789999999999999999999999998855 7899999999999999999999999999999
Q ss_pred HHHHhCCCcEEEeCCC-CcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 028960 107 LGEALEGYPVRLTTLD-GRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLL 185 (201)
Q Consensus 107 ~~~al~G~~~~i~~l~-G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~ 185 (201)
|.+|++|++++|+|+| |..++|+||+++++|++++|+|+|||..+ .+.+|||||+|+|.+|+.|+++|+++|++++++
T Consensus 288 l~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~ 366 (391)
T PRK14284 288 FVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVH-GKGRGDLLVRISVETPQNLSEEQKELLRQFAAT 366 (391)
T ss_pred HHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999 56799999999999999999999999765 356899999999999999999999999999875
Q ss_pred cC------CCCcchhccccCC
Q 028960 186 NR------CLPCFGLFRSWSP 200 (201)
Q Consensus 186 ~~------~~~~~~~~~~~~~ 200 (201)
.. ...+|+++++|+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~ 387 (391)
T PRK14284 367 EKAENFPKKRSFLDKIKGFFS 387 (391)
T ss_pred cccccCcccccHHHHHHHHHh
Confidence 32 2478888888874
No 11
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.9e-42 Score=299.15 Aligned_cols=195 Identities=22% Similarity=0.370 Sum_probs=174.5
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------- 41 (201)
|++|+|+.+.|+|||+|+|+|++++|.+.+.+.| |+| .
T Consensus 118 ~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 197 (380)
T PRK14297 118 PQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKC 197 (380)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCC
Confidence 5679999999999999999999999999887654 211 1
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.++++|.||+|+.+|++|++.|+|++.+.+ .+|||+|+|++.+|+.|+|+|+||+++
T Consensus 198 ~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~ 277 (380)
T PRK14297 198 GGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYID 277 (380)
T ss_pred CCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEE
Confidence 2456789999999999999999999999987654 689999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
++|++.+|++|+++.|+|+||+ +.|+||+++++|++++|+|+|||..+ .+.+|||||+|+|.||+.|+++|+++|+++
T Consensus 278 ~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g~~~g~~~ri~g~G~p~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~ 355 (380)
T PRK14297 278 KHISFAKAALGTEIKVPTVDGE-VKYEVPAGTQPGTVFRLKGKGVPRVN-STGRGNQYVTVIVDIPKKLNSKQKEALTMF 355 (380)
T ss_pred EEeCHHHHhCCCcEEEEcCCCc-EEEEECCCcCCCCEEEEcCCCcCCCC-CCCCCcEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999999999999999997 89999999999999999999999764 357899999999999999999999999999
Q ss_pred HhhcCC-------CCcchhccccCC
Q 028960 183 QLLNRC-------LPCFGLFRSWSP 200 (201)
Q Consensus 183 ~~~~~~-------~~~~~~~~~~~~ 200 (201)
+++... ..+|+++++||.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (380)
T PRK14297 356 MEASGETVDGKEKKTIFEKIKKGFK 380 (380)
T ss_pred HHhcCcccCccccchHHHHHHHhhC
Confidence 886432 248999999973
No 12
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-42 Score=299.55 Aligned_cols=194 Identities=20% Similarity=0.364 Sum_probs=175.4
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC---------------------------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING--------------------------------------- 40 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G--------------------------------------- 40 (201)
|++|+|+.+.+.|||+|+|+|+++++.+.+.+.| |+|
T Consensus 114 ~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G 193 (373)
T PRK14301 114 PQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEG 193 (373)
T ss_pred CCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCcee
Confidence 5689999999999999999999999999887654 222
Q ss_pred c-------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCC-CCCeeEEEEEEecCCCceEEeCCceEEEEEeC
Q 028960 41 N-------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQN-VKPADVVFIVDEKPHSVFTRDGNDLIVTRTIT 106 (201)
Q Consensus 41 ~-------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~ 106 (201)
+ ++.+.++++|.||+|+++|++++++|+|++.+. +.+|||+|+|++.+|+.|+|+|+||+++++|+
T Consensus 194 ~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Is 273 (373)
T PRK14301 194 RVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEIS 273 (373)
T ss_pred eecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEec
Confidence 0 355678999999999999999999999998764 46899999999999999999999999999999
Q ss_pred HHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 028960 107 LGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLN 186 (201)
Q Consensus 107 ~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~~ 186 (201)
+.+|++|+++.|+|+||+ ++|.||+++++|++++|+|+|||..+ .+.+|||||+|+|.+|+.|+++|+++|++++++.
T Consensus 274 l~eAl~G~~~~v~tldG~-i~v~ip~g~~~g~~~ri~g~G~p~~~-~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~~ 351 (373)
T PRK14301 274 FVQAALGDRIEVPTLDDP-VTLDIPKGTQSGEVFRLRGKGLPYLG-SSQKGDLLVEVSVVTPTKLTKRQEELLREFEALE 351 (373)
T ss_pred HHHHhCCCeEEEecCCcc-EEEEECCCcCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999997 99999999999999999999999865 3568999999999999999999999999999874
Q ss_pred CCCCcchhccccCC
Q 028960 187 RCLPCFGLFRSWSP 200 (201)
Q Consensus 187 ~~~~~~~~~~~~~~ 200 (201)
+...+.++++||-
T Consensus 352 -~~~~~~~~~~~~~ 364 (373)
T PRK14301 352 -EEKPLEKVKKFFK 364 (373)
T ss_pred -ccCHHHHHHHHHH
Confidence 3467899999984
No 13
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-41 Score=296.06 Aligned_cols=195 Identities=19% Similarity=0.356 Sum_probs=173.8
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------- 41 (201)
|++|+|+.+.++|||+|+|+|++++|.+.|.+.| |+| .
T Consensus 108 ~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 187 (371)
T PRK14287 108 PRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHC 187 (371)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCC
Confidence 5689999999999999999999999999987665 222 0
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.++++|.||+|+++|++++++|+|++.+++ .+|||+|+|++.+|+.|+|+|+||+++
T Consensus 188 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~ 267 (371)
T PRK14287 188 EGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCE 267 (371)
T ss_pred CCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEE
Confidence 2345578999999999999999999999987644 789999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
+.|++.+|++|+++.|+|+||+ +.|+||+++++|++++|+|+|||..++ +.+|||||+|+|.+|+.|+.+|+++|+++
T Consensus 268 ~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~g~~~ri~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 268 MPLTFPQVALGDEIEVPTLNGK-VKLKIPAGTQTGTSFRLRGKGVPNVHG-RGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred EeccHHHHhCCCEEEEEcCCCC-EEEEECCCccCCcEEEEcCCCccCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999999999999999997 899999999999999999999997653 46899999999999999999999999999
Q ss_pred HhhcC------CCCcchhccccCC
Q 028960 183 QLLNR------CLPCFGLFRSWSP 200 (201)
Q Consensus 183 ~~~~~------~~~~~~~~~~~~~ 200 (201)
+++.. ..++|..+++|+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~ 369 (371)
T PRK14287 346 AGMSGGRPDEQNDGFFAKVKRAFK 369 (371)
T ss_pred HhhhccccCcccccHHHHHHHHhc
Confidence 87532 2467888888875
No 14
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-41 Score=294.89 Aligned_cols=183 Identities=24% Similarity=0.405 Sum_probs=166.9
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC---------------------------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING--------------------------------------- 40 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G--------------------------------------- 40 (201)
|++|+|+.++++|||+|||+|++++|.+.|.+.| |+|
T Consensus 120 ~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G 199 (372)
T PRK14286 120 PQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKG 199 (372)
T ss_pred CCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCcee
Confidence 5689999999999999999999999999987654 221
Q ss_pred c-------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEEEEeC
Q 028960 41 N-------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVTRTIT 106 (201)
Q Consensus 41 ~-------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~ 106 (201)
+ ++.+.++++|.||+|+++|++++++|+|++.+++ .+|||||+|++.+|+.|+|+|+||++++.|+
T Consensus 200 ~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Is 279 (372)
T PRK14286 200 TVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKIS 279 (372)
T ss_pred eEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEEC
Confidence 0 3456689999999999999999999999987755 6799999999999999999999999999999
Q ss_pred HHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 028960 107 LGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLN 186 (201)
Q Consensus 107 ~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~~ 186 (201)
+.+|++|+++.|+|+||+.+.|++|+++++|++++|+|+|||..+ .+.+|||||+|+|.||+.|+++|+++|+++++..
T Consensus 280 l~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~ 358 (372)
T PRK14286 280 LAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLG-AYGKGDQHVIVKIEIPKKITRRQRELIEEFARES 358 (372)
T ss_pred HHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998899999999999999999999999765 3568999999999999999999999999999865
Q ss_pred C
Q 028960 187 R 187 (201)
Q Consensus 187 ~ 187 (201)
.
T Consensus 359 ~ 359 (372)
T PRK14286 359 G 359 (372)
T ss_pred C
Confidence 4
No 15
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-41 Score=294.63 Aligned_cols=194 Identities=21% Similarity=0.329 Sum_probs=174.3
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c----------------------
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N---------------------- 41 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~---------------------- 41 (201)
++|+|+.+.+.|||+|+|+|+++++.+.+.+.| |+| .
T Consensus 116 ~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 195 (372)
T PRK14300 116 VRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQ 195 (372)
T ss_pred CCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccce
Confidence 579999999999999999999999999987765 222 0
Q ss_pred -------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCC-CCCeeEEEEEEecCCCceEEeCCceEEEEEeCH
Q 028960 42 -------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQN-VKPADVVFIVDEKPHSVFTRDGNDLIVTRTITL 107 (201)
Q Consensus 42 -------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~~ 107 (201)
++.+.++++|.||+|+++|++|+++|+|++... +.+|||+|+|++.+|+.|+|+|+||++++.|++
T Consensus 196 ~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl 275 (372)
T PRK14300 196 IIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISF 275 (372)
T ss_pred EeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCH
Confidence 356778999999999999999999999998654 478999999999999999999999999999999
Q ss_pred HHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHhhcC
Q 028960 108 GEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLNR 187 (201)
Q Consensus 108 ~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~~~ 187 (201)
.+|++|+++.|+|+||+.++|.||+++++|++++|+|+|||..+ ...+|||||+|+|.||++||++|+++|+++.++..
T Consensus 276 ~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~-~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~~~ 354 (372)
T PRK14300 276 VNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMR-STIRGDMLTHIHVEVPKNLSKRQRELLEEFKKESI 354 (372)
T ss_pred HHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 99999999999999998899999999999999999999999764 35689999999999999999999999999987532
Q ss_pred -----CCCcchhccccC
Q 028960 188 -----CLPCFGLFRSWS 199 (201)
Q Consensus 188 -----~~~~~~~~~~~~ 199 (201)
...+|+++++|+
T Consensus 355 ~~~~~~~~~~~~~~~~~ 371 (372)
T PRK14300 355 NEKENDGSFFNKMKSLW 371 (372)
T ss_pred ccccccccHHHHHHHhc
Confidence 236788899997
No 16
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-41 Score=296.13 Aligned_cols=181 Identities=23% Similarity=0.394 Sum_probs=165.2
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC---------------------------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING--------------------------------------- 40 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G--------------------------------------- 40 (201)
|++|+|+.+.+.|||+|+|+|++++|.+.+.+.| |+|
T Consensus 136 ~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 215 (389)
T PRK14295 136 PRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRG 215 (389)
T ss_pred CCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCccee
Confidence 5689999999999999999999999999887654 111
Q ss_pred c-------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEEEEeC
Q 028960 41 N-------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVTRTIT 106 (201)
Q Consensus 41 ~-------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~ 106 (201)
+ ++.+.++++|.||+|+++|++++++|+|++.+.+ .+|||+|+|++.+|+.|+|+|+||+++++|+
T Consensus 216 ~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Is 295 (389)
T PRK14295 216 LIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVT 295 (389)
T ss_pred EEeccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeec
Confidence 0 3556789999999999999999999999987654 6899999999999999999999999999999
Q ss_pred HHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 028960 107 LGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLN 186 (201)
Q Consensus 107 ~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~~ 186 (201)
|.+|++|++++|+|+||+.+.|++|+++++|++++|+|+|||... +.+|||||+|+|.||+.|+++|+++|+++.+..
T Consensus 296 l~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~iri~G~G~p~~~--~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~ 373 (389)
T PRK14295 296 FPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVRKD--GTRGDLLVTVEVAVPKDLSGKAREALEAFREAT 373 (389)
T ss_pred HHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEEECCCCcCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999998899999999999999999999999643 568999999999999999999999999999864
No 17
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-41 Score=294.66 Aligned_cols=195 Identities=21% Similarity=0.303 Sum_probs=173.3
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------- 41 (201)
|++|+|+.+.+.|||+|+|+|++++|.+.+.+.| |+| .
T Consensus 116 ~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 195 (380)
T PRK14276 116 PRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVC 195 (380)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCC
Confidence 5689999999999999999999999999887654 211 0
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.++++|.||+|+++|++++++|+|++.+++ .+|||+|+|++.+|+.|+|+|+||+++
T Consensus 196 ~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~ 275 (380)
T PRK14276 196 HGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYT 275 (380)
T ss_pred CCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEE
Confidence 3456788999999999999999999999987654 679999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
++|++.+|++|++++|+|+||+ +.|+||+++++|++++|+|+|||..+ .+.+|||||+|+|.||+.|+++|+++|+++
T Consensus 276 ~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~ 353 (380)
T PRK14276 276 LPISFVQAALGDTVEVPTVHGD-VELKIPAGTQTGKKFRLRGKGAPKLR-GGGNGDQHVTVNIVTPTKLNDAQKEALKAF 353 (380)
T ss_pred EecCHHHHhCCCeEEEEcCCCc-EEEEECCCCCCCCEEEECCCCcCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999997 89999999999999999999999765 356899999999999999999999999999
Q ss_pred HhhcC-------CCCcchhccccCC
Q 028960 183 QLLNR-------CLPCFGLFRSWSP 200 (201)
Q Consensus 183 ~~~~~-------~~~~~~~~~~~~~ 200 (201)
++... ..++|+++++|+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (380)
T PRK14276 354 AKASGEKDVNPKKKGFFDKVKDAFE 378 (380)
T ss_pred HhhccccccCcccccHHHHHHHHhc
Confidence 86421 2467888888874
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.6e-41 Score=291.26 Aligned_cols=194 Identities=23% Similarity=0.343 Sum_probs=174.7
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC---------------------------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING--------------------------------------- 40 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G--------------------------------------- 40 (201)
|++|+|+.+++.|||+|+|+|+++++.+.+.+.| |+|
T Consensus 114 ~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G 193 (366)
T PRK14294 114 VRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMG 193 (366)
T ss_pred CCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcC
Confidence 4579999999999999999999999999887654 221
Q ss_pred c-------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCC-CCCeeEEEEEEecCCCceEEeCCceEEEEEeC
Q 028960 41 N-------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQN-VKPADVVFIVDEKPHSVFTRDGNDLIVTRTIT 106 (201)
Q Consensus 41 ~-------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~ 106 (201)
+ ++.+.++++|.||+|+++|++|+++|+|++.+. +.+|||+|+|++.+|+.|+|+|+||++++.|+
T Consensus 194 ~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is 273 (366)
T PRK14294 194 KVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPIS 273 (366)
T ss_pred eecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeC
Confidence 0 345678999999999999999999999998764 47899999999999999999999999999999
Q ss_pred HHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 028960 107 LGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLN 186 (201)
Q Consensus 107 ~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~~ 186 (201)
+.+|++|++++|+|+||+ +.|.||+++++|++++|+|+|||..+ .+.+|||||+|+|.+|+.|+.+|+++|++++++.
T Consensus 274 l~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~iri~G~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~ 351 (366)
T PRK14294 274 FVQAALGAQIEVPTLEGE-RELKIPKGTQPGDIFRFKGKGIPSLR-GGGRGDQIIEVEVKVPTRLTKKQEELLTEFARLE 351 (366)
T ss_pred HHHHhCCCeEEEECCCCc-EEEEECCCcCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999997 79999999999999999999999765 3468999999999999999999999999999864
Q ss_pred CCCCcchhccccCC
Q 028960 187 RCLPCFGLFRSWSP 200 (201)
Q Consensus 187 ~~~~~~~~~~~~~~ 200 (201)
+++.+++.|+||.
T Consensus 352 -~~~~~~~~~~~~~ 364 (366)
T PRK14294 352 -SEKIGNKLRNLFK 364 (366)
T ss_pred -cccHHHHHHHHhh
Confidence 4577899999984
No 19
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.9e-41 Score=292.19 Aligned_cols=192 Identities=22% Similarity=0.392 Sum_probs=169.2
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC---------------------------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING--------------------------------------- 40 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G--------------------------------------- 40 (201)
|++|+|+.+.++|||+|+|+|++++|.+.+.+.| |+|
T Consensus 143 ~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 222 (392)
T PRK14279 143 PRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTG 222 (392)
T ss_pred CCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCcee
Confidence 5689999999999999999999999999887654 221
Q ss_pred c-------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEEEEeC
Q 028960 41 N-------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVTRTIT 106 (201)
Q Consensus 41 ~-------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~ 106 (201)
+ ++.+.++++|.||+|+++|++|+++|+|++.+++ .+|||+|+|.+++|+.|+|+|+||++++.|+
T Consensus 223 ~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Is 302 (392)
T PRK14279 223 SIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVS 302 (392)
T ss_pred EEeCCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEcc
Confidence 0 4567789999999999999999999999988765 6799999999999999999999999999999
Q ss_pred HHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 028960 107 LGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLN 186 (201)
Q Consensus 107 ~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~~ 186 (201)
+.+|++|+++.|+|+||+ +.|+||+++++|++++|+|+|||.. .+.+|||||+|+|.||++|+++|+++|++++++.
T Consensus 303 l~eAl~G~~~~v~~ldg~-i~v~Ip~g~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~~ 379 (392)
T PRK14279 303 FTELALGSTLSVPTLDGP-VGVKVPAGTADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEAE 379 (392)
T ss_pred HHHHcCCceEEEEcCCce-EEEEECCCCCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999997 8999999999999999999999964 3578999999999999999999999999999864
Q ss_pred CCCCcchhccccC
Q 028960 187 RCLPCFGLFRSWS 199 (201)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (201)
.... |+.-++|+
T Consensus 380 ~~~~-~~~~~~~~ 391 (392)
T PRK14279 380 RASG-FDPRAGWA 391 (392)
T ss_pred cccc-ccchhhhc
Confidence 2211 33334664
No 20
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-40 Score=287.85 Aligned_cols=183 Identities=25% Similarity=0.410 Sum_probs=167.0
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------- 41 (201)
|++|+|+.++++|||+|+|+|+++++.+.|.+.| |+| .
T Consensus 116 ~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G 195 (365)
T PRK14285 116 HEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNG 195 (365)
T ss_pred CCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcc
Confidence 5689999999999999999999999999988654 221 0
Q ss_pred --------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEEEEeC
Q 028960 42 --------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVTRTIT 106 (201)
Q Consensus 42 --------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~ 106 (201)
++.+.++++|.||+|+++|++++++|+|++.+++ .+|||+|+|++.+|+.|+|+|+||+++++||
T Consensus 196 ~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Is 275 (365)
T PRK14285 196 KIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPIS 275 (365)
T ss_pred cccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecC
Confidence 3566789999999999999999999999998765 6899999999999999999999999999999
Q ss_pred HHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHhhc
Q 028960 107 LGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLLN 186 (201)
Q Consensus 107 ~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~~ 186 (201)
+.+|++|++++|+|+||+.+.|++|+++++|++++|+|+|||..+ ...+|||||+|+|.+|+.|+.+|+++|+++++..
T Consensus 276 l~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~ 354 (365)
T PRK14285 276 FTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMPILH-TEKFGNLILIIKIKTPKNLNSNAIKLLENLSKEL 354 (365)
T ss_pred HHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCccCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998899999999999999999999999765 3467999999999999999999999999998865
Q ss_pred C
Q 028960 187 R 187 (201)
Q Consensus 187 ~ 187 (201)
.
T Consensus 355 ~ 355 (365)
T PRK14285 355 K 355 (365)
T ss_pred c
Confidence 3
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-40 Score=289.64 Aligned_cols=194 Identities=24% Similarity=0.373 Sum_probs=172.4
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------- 41 (201)
|++|+|+.+.++|||+|+|+|++++|.+.+.+.| |+| .
T Consensus 112 ~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 191 (371)
T PRK10767 112 ARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRG 191 (371)
T ss_pred CCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCce
Confidence 5689999999999999999999999999987654 221 0
Q ss_pred --------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCC-CCCeeEEEEEEecCCCceEEeCCceEEEEEeC
Q 028960 42 --------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQN-VKPADVVFIVDEKPHSVFTRDGNDLIVTRTIT 106 (201)
Q Consensus 42 --------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~ 106 (201)
++.+.++++|.||+|+++|++++++|+|++.+. +.+|||+|+|++.+|+.|+|+|+||++++.|+
T Consensus 192 ~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Is 271 (371)
T PRK10767 192 KIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPIS 271 (371)
T ss_pred eECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeC
Confidence 356678899999999999999999999998654 47899999999999999999999999999999
Q ss_pred HHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHhh-
Q 028960 107 LGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLL- 185 (201)
Q Consensus 107 ~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~- 185 (201)
+.+|++|++++|+|+|| .+.|.+|+++++|++++|+|+|||..+ .+.+|||||+|+|.+|+.|+.+|+++|++++++
T Consensus 272 l~eAl~G~~~~i~~ldG-~i~v~ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~~ 349 (371)
T PRK10767 272 FTTAALGGEIEVPTLDG-RVKLKIPEGTQTGKLFRLRGKGVKSVR-SGARGDLYCQVVVETPVNLTKRQKELLEEFEESF 349 (371)
T ss_pred HHHHhCCCeEEEecCCC-cEEEEeCCCCCCCCEEEECCCCcCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999999 499999999999999999999999765 357899999999999999999999999999873
Q ss_pred ---cC----CCCcchhccccC
Q 028960 186 ---NR----CLPCFGLFRSWS 199 (201)
Q Consensus 186 ---~~----~~~~~~~~~~~~ 199 (201)
.. ...+|+++++|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~ 370 (371)
T PRK10767 350 ESGEKHSPKSKGFFDKVKDFF 370 (371)
T ss_pred ccccccCcccccHHHHHHHhh
Confidence 11 136777788886
No 22
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.2e-40 Score=286.60 Aligned_cols=194 Identities=24% Similarity=0.415 Sum_probs=174.1
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------- 41 (201)
|.+|+|+.+.+.|||+|+|+|+++++.+.+.+.| |+| .
T Consensus 124 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 203 (386)
T PRK14289 124 VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTC 203 (386)
T ss_pred CCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCC
Confidence 4578999999999999999999999999988765 222 1
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCC-CCCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQN-VKPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.++++|.||+|+++|++++++|+|++.+. +.+|||+|+|++.+|+.|+|+++||+++
T Consensus 204 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~ 283 (386)
T PRK14289 204 NGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYN 283 (386)
T ss_pred CccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEE
Confidence 245667899999999999999999999998754 4789999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
+.|++.+|++|+++.|+|++|+ +.|.||+++++|++++|+|+|||..+ .+.+|||||+|+|.||+.|+++|+++|+++
T Consensus 284 ~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~g~~~ri~g~G~p~~~-~~~~GDL~v~~~v~~P~~l~~~q~~~l~~l 361 (386)
T PRK14289 284 LLLSVPTAALGGAVEVPTIDGK-AKVKIEAGTQPGKVLRLRNKGLPSVN-GYGTGDLLVNVSVYIPETLSKEEKQTLEKM 361 (386)
T ss_pred eccCHHHHhCCCeEEeecCCce-EEEEECCccCCCcEEEECCCCcCCCC-CCCCCcEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 9999999999999999999996 89999999999999999999999765 357899999999999999999999999999
Q ss_pred HhhcC-------CCCcchhccccC
Q 028960 183 QLLNR-------CLPCFGLFRSWS 199 (201)
Q Consensus 183 ~~~~~-------~~~~~~~~~~~~ 199 (201)
.+.+. .+++|.++|+|+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~ 385 (386)
T PRK14289 362 ENSDNFKPTTSIKEKIFKKFKSFF 385 (386)
T ss_pred HhhcCCCCCcchhhhHHHHHHHhh
Confidence 98632 146899999997
No 23
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-39 Score=282.74 Aligned_cols=182 Identities=24% Similarity=0.337 Sum_probs=165.1
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----c-----------------CCc---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----I-----------------NGN--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g-----------------~G~--------------------- 41 (201)
|++|+|+.+.++|||+|+|+|+++++.+.|.+.| | +|.
T Consensus 122 ~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 201 (369)
T PRK14282 122 ARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERC 201 (369)
T ss_pred CCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCC
Confidence 4679999999999999999999999999887654 2 111
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.++++|.||+|+.+|++|+++|+|++.+.+ .+|||+|+|++.+|+.|+|+|+||+++
T Consensus 202 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~ 281 (369)
T PRK14282 202 GGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYD 281 (369)
T ss_pred CCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEE
Confidence 3455689999999999999999999999987654 689999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
+.|+|.+|++|+++.|+|+||+.++|+||+++++|++++|+|+|||... .+.+|||||+|+|.+|+.|+.+++++|+++
T Consensus 282 ~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~-~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 282 VTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMR-YGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred EEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999998899999999999999999999999754 356899999999999999999999999999
Q ss_pred Hhhc
Q 028960 183 QLLN 186 (201)
Q Consensus 183 ~~~~ 186 (201)
+++.
T Consensus 361 ~~~~ 364 (369)
T PRK14282 361 AKKR 364 (369)
T ss_pred HHhc
Confidence 8763
No 24
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-39 Score=283.62 Aligned_cols=182 Identities=30% Similarity=0.465 Sum_probs=165.5
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------- 41 (201)
|.+|+|+.+.+.|||+|||+|+++++.+.+.+.| |+| .
T Consensus 126 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 205 (382)
T PRK14291 126 PVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEG 205 (382)
T ss_pred ccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCce
Confidence 4579999999999999999999999999988765 222 0
Q ss_pred -------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCC-CCCeeEEEEEEecCCCceEEeCCceEEEEEeCH
Q 028960 42 -------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQN-VKPADVVFIVDEKPHSVFTRDGNDLIVTRTITL 107 (201)
Q Consensus 42 -------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~~ 107 (201)
++.+.++++|.||+|+.+|++|+|+|+|++.+. +.+|||||+|++.+|+.|+|+|+||++++.|+|
T Consensus 206 ~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl 285 (382)
T PRK14291 206 VLREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITV 285 (382)
T ss_pred EEccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeH
Confidence 356678999999999999999999999998764 579999999999999999999999999999999
Q ss_pred HHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCC--CCC------HHHHHHH
Q 028960 108 GEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPP--SLT------AEQKAGI 179 (201)
Q Consensus 108 ~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~--~l~------~~~~~~l 179 (201)
.+|++|+++.|+|+||+.++|+||+++++|++++|+|+|||..+ ...+|||||+|+|.||+ .|| ++|+++|
T Consensus 286 ~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~-~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~ 364 (382)
T PRK14291 286 AEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLK-GSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLL 364 (382)
T ss_pred HHHhCCCEEEEecCCCCEEEEEECCccCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHH
Confidence 99999999999999998899999999999999999999999765 34689999999999998 599 9999999
Q ss_pred HHHHhhc
Q 028960 180 KFLQLLN 186 (201)
Q Consensus 180 ~~~~~~~ 186 (201)
+++.++.
T Consensus 365 ~~l~~~~ 371 (382)
T PRK14291 365 KELDKLL 371 (382)
T ss_pred HHHHhhc
Confidence 9998754
No 25
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-39 Score=281.32 Aligned_cols=195 Identities=23% Similarity=0.384 Sum_probs=172.0
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------- 41 (201)
|++|+|+.++++|||+|+|+|+++++.+.+.+.| |+| .
T Consensus 116 ~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 195 (378)
T PRK14283 116 PQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDC 195 (378)
T ss_pred ccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCC
Confidence 5689999999999999999999999999887655 211 1
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCC-CCCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQN-VKPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.+.++|.||+|+++|++++++|+|++.+. +.+|||+|+|.+.+|+.|+|+|+||+++
T Consensus 196 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~ 275 (378)
T PRK14283 196 QGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYE 275 (378)
T ss_pred CccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEE
Confidence 234567899999999999999999999998764 4789999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
+.|++.+|++|+++.|+|+|| .+.|.+|+++++|++++|+|+|||... .+.+|||||+|+|.||+.|+++|+++|+++
T Consensus 276 ~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g~~~g~~~ri~g~G~p~~~-~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~ 353 (378)
T PRK14283 276 KPISFVQAALGDTVDVPTIDG-PVELKIPAGTQSGTTFRLKGHGMPSLR-WSGKGNLYVKVKVVVPKKLSPKQKELLREF 353 (378)
T ss_pred EecCHHHHhcCCeEEEEcCCc-eEEEEeCCCCCCCCEEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 999999999999999999999 599999999999999999999999765 357899999999999999999999999999
Q ss_pred HhhcC------CCCcchhccccCC
Q 028960 183 QLLNR------CLPCFGLFRSWSP 200 (201)
Q Consensus 183 ~~~~~------~~~~~~~~~~~~~ 200 (201)
.+... .+++|.++++|..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~ 377 (378)
T PRK14283 354 ASISGDEIHHVKKGLFDKVKDAIN 377 (378)
T ss_pred HhhcccccCcccccHHHHHHHHhc
Confidence 86432 2367776777753
No 26
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-39 Score=282.60 Aligned_cols=194 Identities=20% Similarity=0.276 Sum_probs=172.2
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC------------------c--------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING------------------N-------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G------------------~-------------------- 41 (201)
|++|.|+.+.++|||+|+|+|+++++.+.+.+.| |+| .
T Consensus 109 ~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 188 (371)
T PRK14292 109 PARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPT 188 (371)
T ss_pred ccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCC
Confidence 5679999999999999999999999999987654 211 1
Q ss_pred -------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 -------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 -------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.++++|.||+|+++|++++++|+|++.+++. |||||+|++.+|+.|+|+|+||+++
T Consensus 189 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~-GDL~v~i~v~~h~~f~r~g~dL~~~ 267 (371)
T PRK14292 189 CRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGN-GDLYVHIEMEPHPELRREQEHLIYE 267 (371)
T ss_pred CcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCCC-CCEEEEEEEecCCccccchhceeEE
Confidence 23445789999999999999999999999876665 9999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
+.|++.+|++|+++.|+|++|+ ..|.||+++++|++++|+|+|||..+ ...+|||||+|+|.+|+.|+++|+++|+++
T Consensus 268 ~~isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~ 345 (371)
T PRK14292 268 ARIGFAKAALGGQITVPTLDGP-QVIEVKPGTQHGDLHRLRGQGMPRLQ-GAGTGDLIVEYEIAVPKQLSPEAREALEAY 345 (371)
T ss_pred eccCHHHHhCCCeEEEECCCCC-EEEecCCCcCCCcEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999997 58999999999999999999999765 246899999999999999999999999999
Q ss_pred HhhcC------CCCcchhccccCC
Q 028960 183 QLLNR------CLPCFGLFRSWSP 200 (201)
Q Consensus 183 ~~~~~------~~~~~~~~~~~~~ 200 (201)
.+... .+++|.++++|+-
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~ 369 (371)
T PRK14292 346 ARAVGDEVPEPHEGLFDKVGKLFR 369 (371)
T ss_pred HhhcccccCcccccHHHHHHHHhc
Confidence 87532 2478888999974
No 27
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=4.8e-39 Score=273.64 Aligned_cols=178 Identities=21% Similarity=0.287 Sum_probs=164.0
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEE-EeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEE
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIK-VEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVV 81 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~-~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~ 81 (201)
+++|+|+.+++.|||+|+|+|+.+++.+.+.++||.|.... ..++++|.||+|+++|++++++|+|++.+++ .+|||+
T Consensus 114 ~~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~ 193 (306)
T PRK10266 114 AARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLW 193 (306)
T ss_pred CCCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEE
Confidence 45789999999999999999999999999988888773322 2357999999999999999999999987654 689999
Q ss_pred EEEEecCCCceEEeCCceEEEEEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEE
Q 028960 82 FIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKI 161 (201)
Q Consensus 82 v~i~v~~~~~f~r~g~dL~~~~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v 161 (201)
|+|++.+|+.|+|+|+||+++++||+.+|++|+++.|+|++|+ +.|++|+++++|++++|+|+|||.. +.+|||||
T Consensus 194 v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g~~~g~~~ri~g~G~p~~---~~~GdL~v 269 (306)
T PRK10266 194 LVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPGSQAGQRLRVKGKGLVSK---KQTGDLYA 269 (306)
T ss_pred EEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCCcCCCCEEEECCCCCCCC---CCCCCEEE
Confidence 9999999999999999999999999999999999999999997 8999999999999999999999964 35899999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Q 028960 162 KFNIKFPPSLTAEQKAGIKFLQLL 185 (201)
Q Consensus 162 ~~~v~~P~~l~~~~~~~l~~~~~~ 185 (201)
+|+|.+|+.|+++|+++|+++.++
T Consensus 270 ~~~v~~P~~l~~~q~~l~~~l~~~ 293 (306)
T PRK10266 270 VLKIVMPPKPDEKTAALWQQLADA 293 (306)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999886
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.4e-39 Score=280.55 Aligned_cols=182 Identities=23% Similarity=0.386 Sum_probs=163.6
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cC-----------------Cc---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----IN-----------------GN--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~-----------------G~--------------------- 41 (201)
|++++|+.+.+.|||+|+|+|+++++.+.+.+.| |+ |.
T Consensus 113 ~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (374)
T PRK14293 113 PQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTC 192 (374)
T ss_pred ccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCC
Confidence 4578999999999999999999999999987654 21 11
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.++++|.||+|+++|++++++|+|++...+ .+|||+|+|++.+|+.|+|+|+||+++
T Consensus 193 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~ 272 (374)
T PRK14293 193 NGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSE 272 (374)
T ss_pred CcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEE
Confidence 2344568899999999999999999999986544 689999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
++|++.+|++|+++.|+|+||+ ++|++|+++++|++++|+|+|||..++.+.+|||||+|+|.||+.|+.+|+++|+++
T Consensus 273 ~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 273 IKISYLQAILGDTLEVDTVDGP-VELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred eccCHHHHhCCCEEEecCCCCC-EEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999997 899999999999999999999997654456899999999999999999999999999
Q ss_pred Hhhc
Q 028960 183 QLLN 186 (201)
Q Consensus 183 ~~~~ 186 (201)
+++.
T Consensus 352 ~~~~ 355 (374)
T PRK14293 352 AKIK 355 (374)
T ss_pred Hhhc
Confidence 9864
No 29
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=6.1e-39 Score=278.05 Aligned_cols=180 Identities=28% Similarity=0.454 Sum_probs=163.6
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC-----------------c---------------------
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING-----------------N--------------------- 41 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G-----------------~--------------------- 41 (201)
|++|+|+.++++|||+|+|+|+++++.+.|.+.| |+| .
T Consensus 113 ~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (354)
T TIGR02349 113 PRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTC 192 (354)
T ss_pred CCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCC
Confidence 5689999999999999999999999999887655 222 0
Q ss_pred ------------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 42 ------------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 42 ------------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
++.+.+.++|.||+|+++|++++++|+|++.+.+ .+|||+|+|++.+|+.|+|+|+||+++
T Consensus 193 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~ 272 (354)
T TIGR02349 193 GGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIE 272 (354)
T ss_pred CCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEE
Confidence 3456688999999999999999999999986544 689999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
+.|++.+|++|+++.|+|+|| .+.|.+|+++++|++++|+|+|||..+ .+.+|||||+|+|.||+.|+.+|+++|+++
T Consensus 273 ~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g~~~g~~~~i~g~G~p~~~-~~~~GDL~i~~~v~~P~~l~~~~~~~l~~~ 350 (354)
T TIGR02349 273 VPISFTQAILGGEIEVPTLDG-DVKLKIPAGTQSGTVFRLKGKGVPRLR-GNGRGDLLVTVKVETPKNLSKEQKELLEEL 350 (354)
T ss_pred EEeCHHHHhCCCeEEEecCCc-eEEEEECCcccCCcEEEECCCCcCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999999 599999999999999999999999765 347899999999999999999999999999
Q ss_pred Hhh
Q 028960 183 QLL 185 (201)
Q Consensus 183 ~~~ 185 (201)
++.
T Consensus 351 ~~~ 353 (354)
T TIGR02349 351 AEA 353 (354)
T ss_pred Hhh
Confidence 875
No 30
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-38 Score=276.88 Aligned_cols=177 Identities=25% Similarity=0.357 Sum_probs=161.0
Q ss_pred CCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cC----------------Cc------------------------
Q 028960 6 KAPPIENRLPCTLEELYKGTTKKIKISREIVD----IN----------------GN------------------------ 41 (201)
Q Consensus 6 kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~----------------G~------------------------ 41 (201)
+++|+.+.++|||+|+|+|++++|.+.+.+.| |+ |.
T Consensus 121 ~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~ 200 (365)
T PRK14290 121 IDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGR 200 (365)
T ss_pred CCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCc
Confidence 48999999999999999999999999887654 11 11
Q ss_pred ---------------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEEEecCCCceEEeCCceEEEEEeC
Q 028960 42 ---------------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTIT 106 (201)
Q Consensus 42 ---------------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~ 106 (201)
++.+.++++|.||+|+.+|++|+|+|+|+. +++.+|||+|+|++++|+.|+|+|+||++++.|+
T Consensus 201 G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Is 279 (365)
T PRK14290 201 GRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKIN 279 (365)
T ss_pred eeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeC
Confidence 345668899999999999999999999985 5668999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHhh
Q 028960 107 LGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIKFLQLL 185 (201)
Q Consensus 107 ~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~ 185 (201)
+.+|++|+++.|+|++|+ ++|.||+++++|++++|+|+|||..+ .+.+|||||+|+|.+|+.|+.+|+++|+++..+
T Consensus 280 l~eAl~G~~~~I~~~~g~-i~V~Ip~g~~~g~~iri~g~G~p~~~-~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~ 356 (365)
T PRK14290 280 FPQAALGGEIEIKLFREK-YNLKIPEGTQPGEVLKIKGAGMPHLN-GHGSGDLLVRINVEVPKRLTSKQKELIREFFDI 356 (365)
T ss_pred HHHHhCCCEEEEEcCCce-EEEEECCccCCCcEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999995 99999999999999999999999765 246899999999999999999999999999765
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-38 Score=269.32 Aligned_cols=161 Identities=32% Similarity=0.506 Sum_probs=151.6
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEE
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFI 83 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~ 83 (201)
+++|+|+.+++.|||+|||+|+++++.+. | +.++|+||+|+++|++++++|+|++. |||+|+
T Consensus 126 ~~~g~dl~~~l~isL~ea~~G~~~~i~l~-------g------~~~~V~Ip~G~~~G~~ir~~g~G~~~-----GDL~v~ 187 (291)
T PRK14299 126 ARKGRDLEAELPLTLEEAYRGGEKVVEVA-------G------ERLSVRIPPGVREGQVIRLAGKGRQG-----GDLYLV 187 (291)
T ss_pred CCCCCCEEEEEEecHHHHhCCCeEEEeeC-------C------EEEEEecCCCcCCCcEEEECCCCCCC-----CCEEEE
Confidence 56899999999999999999999999775 4 58999999999999999999999863 999999
Q ss_pred EEecCCCceEEeCCceEEEEEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEE
Q 028960 84 VDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKF 163 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL~~~~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~ 163 (201)
|++++|+.|+|+|+||+++++|++.+|++|++++|+|+||+ ++|++|+++++|++++|+|+|||.. ++.+|||||+|
T Consensus 188 i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~~~~g~~~rl~g~G~p~~--~~~~GDL~v~~ 264 (291)
T PRK14299 188 VRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPRTQAGRKLRLKGKGWPRG--PAGRGDQYAEV 264 (291)
T ss_pred EEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCCcCCCCEEEECCCCCCCC--CCCCCCEEEEE
Confidence 99999999999999999999999999999999999999996 9999999999999999999999963 35799999999
Q ss_pred EEECCCCCCHHHHHHHHHHHhh
Q 028960 164 NIKFPPSLTAEQKAGIKFLQLL 185 (201)
Q Consensus 164 ~v~~P~~l~~~~~~~l~~~~~~ 185 (201)
+|.+|+.|+.+|++++++++++
T Consensus 265 ~V~~P~~l~~~~~~~l~~l~~~ 286 (291)
T PRK14299 265 RITIPTRPTPEEERLYKQLAEL 286 (291)
T ss_pred EEECCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999875
No 32
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=5.1e-36 Score=272.10 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=145.0
Q ss_pred CCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCc-EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEEE
Q 028960 7 APPIENRLPCTLEELYKGTTKKIKISREIVDINGN-TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVD 85 (201)
Q Consensus 7 g~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~-~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i~ 85 (201)
.-||.+.+.|||+++|+||+++|++.|.++||.|. .+.+.++++|+||+|+++|++|+|+|+|+..+++. |||+|+|+
T Consensus 656 ~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIk 734 (871)
T TIGR03835 656 NVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFK 734 (871)
T ss_pred ccceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEE
Confidence 34789999999999999999999999999998873 56677899999999999999999999999865554 99999999
Q ss_pred ecCCCceEEeCCceEEEEEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEE
Q 028960 86 EKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNI 165 (201)
Q Consensus 86 v~~~~~f~r~g~dL~~~~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v 165 (201)
+++|+.|+|+|+||++++.|++.+||+|+++.|+|+||+ ++|+||+++++|+++||+|+|||... +.+|||||+|.|
T Consensus 735 VKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTLDGr-VkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V 811 (871)
T TIGR03835 735 VIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPNKL-FNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYY 811 (871)
T ss_pred EcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCCCCC-EEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEE
Confidence 999999999999999999999999999999999999997 99999999999999999999999543 569999999998
Q ss_pred EC
Q 028960 166 KF 167 (201)
Q Consensus 166 ~~ 167 (201)
.-
T Consensus 812 ~~ 813 (871)
T TIGR03835 812 SS 813 (871)
T ss_pred ee
Confidence 74
No 33
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-31 Score=224.58 Aligned_cols=175 Identities=40% Similarity=0.652 Sum_probs=162.5
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEc----cCC----------------------------------------
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVD----ING---------------------------------------- 40 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~----g~G---------------------------------------- 40 (201)
.+|.|+.+.++|||+|+|.|.++.+.+.++.+| |+|
T Consensus 98 ~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~ 177 (337)
T KOG0712|consen 98 QRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCN 177 (337)
T ss_pred ccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCC
Confidence 359999999999999999999999999999876 221
Q ss_pred ------------------cEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEEEecCCCceEEeCCceEEE
Q 028960 41 ------------------NTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 41 ------------------~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~ 102 (201)
+++.+.+.++|.|++|+.+++.+.+.|++++.++..+||+++.+..++|+.|.|+|+||++.
T Consensus 178 G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~ 257 (337)
T KOG0712|consen 178 GSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRK 257 (337)
T ss_pred CccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEecccccccceeccccccee
Confidence 05778899999999999999999999999998888899999999999999999999999999
Q ss_pred EEeCHHHHhCCCcEEEeCCCCcEEEEeeCC--ccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHHHHH
Q 028960 103 RTITLGEALEGYPVRLTTLDGRSLNIPIDN--VIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKAGIK 180 (201)
Q Consensus 103 ~~i~~~~al~G~~~~i~~l~G~~~~i~vp~--~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~~l~ 180 (201)
.+|++.+|++|+.+.+.|+||+.+.+.++| ++++|++++|+|+|||..+++ +|||||+|.|.||+ +++++...|+
T Consensus 258 ~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~--~g~lyi~~~v~fp~-~~~~~~~~l~ 334 (337)
T KOG0712|consen 258 LTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP--KGDLYIKFEVKFPK-LSPSQLKMLE 334 (337)
T ss_pred eecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC--CCcEEEEEEEEcCC-CChHHHHHHH
Confidence 999999999999999999999999999986 899999999999999999865 99999999999999 9999999887
Q ss_pred HH
Q 028960 181 FL 182 (201)
Q Consensus 181 ~~ 182 (201)
++
T Consensus 335 ~~ 336 (337)
T KOG0712|consen 335 DL 336 (337)
T ss_pred hh
Confidence 65
No 34
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.91 E-value=1.3e-24 Score=150.70 Aligned_cols=81 Identities=38% Similarity=0.600 Sum_probs=70.5
Q ss_pred ceEEEEEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCCHHHHH
Q 028960 98 DLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLTAEQKA 177 (201)
Q Consensus 98 dL~~~~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~ 177 (201)
||+++++|++++|++|++++|+|+||+.++|++|+++++|++++|+|+|||...+++.+|||||+|+|.+|++||++|++
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 89999999999999999999999999889999999999999999999999988765689999999999999999999987
Q ss_pred H
Q 028960 178 G 178 (201)
Q Consensus 178 ~ 178 (201)
+
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 5
No 35
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.35 E-value=3.9e-12 Score=87.89 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=58.7
Q ss_pred CeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC--CCeeEEEEEEe
Q 028960 9 PIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV--KPADVVFIVDE 86 (201)
Q Consensus 9 di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~--~~GDl~v~i~v 86 (201)
|++++++|||.||++|++++|... .| +.++|++|+|+++|++++++|+|.+...+ .+|||++++++
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l------~g------~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V 68 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTL------DG------KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEV 68 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-T------TS-------EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEE
T ss_pred CeEEEEEeCHHHHhCCCEEEEECC------CC------CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEE
Confidence 689999999999999999999887 67 68999999999999999999999975544 69999999999
Q ss_pred cCCCceE
Q 028960 87 KPHSVFT 93 (201)
Q Consensus 87 ~~~~~f~ 93 (201)
.-+..++
T Consensus 69 ~~P~~ls 75 (81)
T PF01556_consen 69 EFPKKLS 75 (81)
T ss_dssp E--SSTS
T ss_pred ECCCCCC
Confidence 8655443
No 36
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.2e-13 Score=113.25 Aligned_cols=170 Identities=27% Similarity=0.457 Sum_probs=145.7
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEE----------c---------cCCc----------------EEEEeEE
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIV----------D---------INGN----------------TIKVEEI 48 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~----------~---------g~G~----------------~~~~~~~ 48 (201)
..+|.++...++.+++++|.|...+....+.+. | |.|. ...+...
T Consensus 123 ~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~ 202 (336)
T KOG0713|consen 123 LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNCRLEMFTQQEGPGRFQMLQEAVCDECPNVKLVLEEDP 202 (336)
T ss_pred CCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcccccCChhhheeeccCCChhhhhhhhhhccCCccceeecCCc
Confidence 357899999999999999998654433332221 1 2221 4678889
Q ss_pred EEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEEEecCCCceEEeCCceEEEEEeCHHHHhCCCcEEEeCCCCcEEEE
Q 028960 49 LTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNI 128 (201)
Q Consensus 49 ~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~~~~al~G~~~~i~~l~G~~~~i 128 (201)
.++.+..|...+.......+|.++.-+.+||+++++..-+|+.|.|+++|+++++.+++.+++.|+..++.++|+..+.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~ 282 (336)
T KOG0713|consen 203 LEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEV 282 (336)
T ss_pred eeeeeeecccCCceeeeeccCCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999987777
Q ss_pred eeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCC-CCH
Q 028960 129 PIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPS-LTA 173 (201)
Q Consensus 129 ~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~-l~~ 173 (201)
..-..+.++..++.+++|||...+....|.+|++|.+.+|.+ ++.
T Consensus 283 ~r~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 283 SRKKITWPGARTRKKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hhhhccccchhhhhhhccchhhhccchhcceeEEecccCcccccch
Confidence 777788999999999999997777789999999999999965 444
No 37
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=4.4e-12 Score=110.82 Aligned_cols=86 Identities=15% Similarity=0.241 Sum_probs=76.9
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCC-CCCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQN-VKPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~GDl~v~ 83 (201)
|+|.|+.++++|||.||+.|+++.|... .| +.++|+||+|+++|++++++|+|++... +.+|||||+
T Consensus 273 r~G~DL~~~~~Isl~eAl~G~~~~i~~l------dG------~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~ 340 (369)
T PRK14282 273 RSGSDLIYDVTIDYLQAILGTTVEVPLP------EG------GTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVN 340 (369)
T ss_pred EecCCEEEEEEeCHHHHhCCCEEEEeCC------CC------cEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 5699999999999999999999999886 56 5799999999999999999999998653 368999999
Q ss_pred EEecCCCceEEeCCceEEE
Q 028960 84 VDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL~~~ 102 (201)
|.+..|+.|++++.+|+.+
T Consensus 341 ~~v~~P~~l~~~~~~ll~~ 359 (369)
T PRK14282 341 VHVEIPKRLSREERKLLKE 359 (369)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999887654
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.8e-11 Score=106.89 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=76.5
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|.|.|+.++++|||.||+.|+++.|... .| .++|+||+|+++|++++++|+|++.+++ .+|||||+
T Consensus 267 R~G~DL~~~~~Isl~eAl~G~~~~I~~~------~g-------~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~ 333 (365)
T PRK14290 267 RINDDLYVDQKINFPQAALGGEIEIKLF------RE-------KYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVR 333 (365)
T ss_pred EecCCEEEEEEeCHHHHhCCCEEEEEcC------Cc-------eEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEE
Confidence 4689999999999999999999999876 45 6999999999999999999999987655 68999999
Q ss_pred EEecCCCceEEeCCceEEE
Q 028960 84 VDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL~~~ 102 (201)
|.+..++.|++++.+|+.+
T Consensus 334 ~~V~~P~~l~~~~~~ll~~ 352 (365)
T PRK14290 334 INVEVPKRLTSKQKELIRE 352 (365)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999988887765
No 39
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=2.5e-11 Score=105.93 Aligned_cols=85 Identities=15% Similarity=0.263 Sum_probs=75.7
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.+++.|||.||+.|.++.|... .| .++|.||+|+++|++++++|+|++.++. .+|||||+
T Consensus 261 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~ 327 (366)
T PRK14294 261 RDGNDVHCKVPISFVQAALGAQIEVPTL------EG-------ERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIE 327 (366)
T ss_pred ecCCCEEEEEEeCHHHHhCCCeEEEECC------CC-------cEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 5799999999999999999999999877 56 4699999999999999999999986654 68999999
Q ss_pred EEecCCCceEEeCCceEEE
Q 028960 84 VDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL~~~ 102 (201)
|.+..|+.|+++..+++..
T Consensus 328 ~~v~~P~~l~~~q~~ll~~ 346 (366)
T PRK14294 328 VEVKVPTRLTKKQEELLTE 346 (366)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999898888777654
No 40
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=2.3e-11 Score=106.15 Aligned_cols=85 Identities=14% Similarity=0.264 Sum_probs=75.4
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|++++++|||.||++|.++.|... .| +.++|.||+|+++|++++++|+|++.++. ..|||||+
T Consensus 263 R~G~dL~~~~~Isl~eAl~G~~~~i~tl------dG------~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~ 330 (365)
T PRK14285 263 RNGKDLYATLPISFTQAALGKEIKIQTI------AS------KKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILI 330 (365)
T ss_pred EeccceEEEEecCHHHHhCCCEEEEECC------CC------CEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEE
Confidence 4689999999999999999999999987 66 57999999999999999999999987655 47999999
Q ss_pred EEecCCCceEEeCCceEE
Q 028960 84 VDEKPHSVFTRDGNDLIV 101 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL~~ 101 (201)
|.+..|+.|++++..++.
T Consensus 331 ~~v~~P~~l~~~q~~~l~ 348 (365)
T PRK14285 331 IKIKTPKNLNSNAIKLLE 348 (365)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 999999999887765543
No 41
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=2.8e-11 Score=102.56 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=73.3
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIV 84 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i 84 (201)
|+|.|+.++++|||.+|++|+++.|... .| .++|+||+|+++|++++++|+|.+..++.+|||+|++
T Consensus 198 R~G~DL~~~~~Isl~eAl~G~~~~v~tl------dG-------~~~v~ip~~~~~g~~~rl~g~G~p~~~~~~GDL~v~~ 264 (291)
T PRK14299 198 LEGDDLYATVDVPAPIAVVGGKVRVMTL------DG-------PVEVTIPPRTQAGRKLRLKGKGWPRGPAGRGDQYAEV 264 (291)
T ss_pred EECCEEEEEEecCHHHHhCCCEEEEECC------CC-------CEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCEEEEE
Confidence 5699999999999999999999999887 67 5899999999999999999999985444689999999
Q ss_pred EecCCCceEEeCCceE
Q 028960 85 DEKPHSVFTRDGNDLI 100 (201)
Q Consensus 85 ~v~~~~~f~r~g~dL~ 100 (201)
.+..++.++.++.+++
T Consensus 265 ~V~~P~~l~~~~~~~l 280 (291)
T PRK14299 265 RITIPTRPTPEEERLY 280 (291)
T ss_pred EEECCCCCCHHHHHHH
Confidence 9999888887765554
No 42
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=3.7e-11 Score=105.25 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=75.9
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.++++|||.||+.|+++.|... .| .++|+||+|+++|++++++|+|++..++ .+|||||+
T Consensus 262 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~ 328 (377)
T PRK14298 262 RVGDDIISEIPISFTQAALGADIMVPTL------YG-------KVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVK 328 (377)
T ss_pred EEcCcEEEEEEeCHHHHhCCCeEEEecC------CC-------CEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 4699999999999999999999999887 67 4799999999999999999999986554 57999999
Q ss_pred EEecCCCceEEeCCceEEEE
Q 028960 84 VDEKPHSVFTRDGNDLIVTR 103 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL~~~~ 103 (201)
|.+..++.+++++.+++.++
T Consensus 329 ~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 329 VIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999988998887776543
No 43
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=4.4e-11 Score=104.64 Aligned_cols=86 Identities=13% Similarity=0.187 Sum_probs=76.3
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.+++.|||.||+.|+++.|... .| .++|.||+|+++|+.++++|+|++.+++ .+|||||+
T Consensus 259 R~G~DL~~~~~Isl~eAl~G~~~~i~~l------dG-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~ 325 (371)
T PRK10767 259 RDGNDLYCEVPISFTTAALGGEIEVPTL------DG-------RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQ 325 (371)
T ss_pred EecCCEEEEEEeCHHHHhCCCeEEEecC------CC-------cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEE
Confidence 4689999999999999999999999776 56 6899999999999999999999986544 68999999
Q ss_pred EEecCCCceEEeCCceEEEE
Q 028960 84 VDEKPHSVFTRDGNDLIVTR 103 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL~~~~ 103 (201)
|++..++.|++++.+|+.++
T Consensus 326 ~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 326 VVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999988999888876643
No 44
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=6.7e-11 Score=104.11 Aligned_cols=85 Identities=13% Similarity=0.202 Sum_probs=73.2
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccC-CcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDIN-GNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVF 82 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~-G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v 82 (201)
|+|.||.++++|||+||++|++++|... . | ..++|+||+|+++|++++++|+|++..++ .+|||||
T Consensus 275 R~G~DL~~~~~Isl~eAl~G~~~~v~tl------d~g------~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V 342 (391)
T PRK14284 275 RRGDDLILELPIGFVDAALGMKKEIPTL------LKE------GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLV 342 (391)
T ss_pred eecCCEEEEEEecHHHHhCCCeEEEeec------CCC------cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEE
Confidence 5699999999999999999999999875 3 3 37999999999999999999999987654 6899999
Q ss_pred EEEecCCCceEEeCCceEE
Q 028960 83 IVDEKPHSVFTRDGNDLIV 101 (201)
Q Consensus 83 ~i~v~~~~~f~r~g~dL~~ 101 (201)
+|.+..++.++.+..+++.
T Consensus 343 ~~~v~~P~~l~~~q~~ll~ 361 (391)
T PRK14284 343 RISVETPQNLSEEQKELLR 361 (391)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 9999988877776655543
No 45
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=8.7e-11 Score=102.73 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=73.2
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.+++.|||.||+.|+++.|... .| .++|+||+|+++|++++++|+|++..++ .+|||||+
T Consensus 259 R~G~DL~~~~~Isl~eAl~G~~~~i~~l------dg-------~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~ 325 (371)
T PRK14287 259 RDGDDIYCEMPLTFPQVALGDEIEVPTL------NG-------KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQ 325 (371)
T ss_pred EecCCeEEEEeccHHHHhCCCEEEEEcC------CC-------CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEE
Confidence 4689999999999999999999999876 56 4899999999999999999999986654 57999999
Q ss_pred EEecCCCceEEeCCceEE
Q 028960 84 VDEKPHSVFTRDGNDLIV 101 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL~~ 101 (201)
|.+..++.++.+...++.
T Consensus 326 ~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14287 326 VRVVTPKNLTEKEKELMR 343 (371)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 999998888776655443
No 46
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=2.8e-10 Score=99.63 Aligned_cols=83 Identities=12% Similarity=0.267 Sum_probs=71.8
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.++++|||.||++|.++.|... .| +.++|+||+|+++|++++++|+|++.+++ .+|||||+
T Consensus 262 R~G~Dl~~~~~Isl~~Al~G~~~~i~~l------dg------~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~ 329 (372)
T PRK14300 262 VDGANLHCKLPISFVNAALGGEIEVPVI------EG------GKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTH 329 (372)
T ss_pred EecCCEEEEEecCHHHHhCCCEEEEecC------CC------CEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEE
Confidence 4689999999999999999999999886 55 47999999999999999999999987654 68999999
Q ss_pred EEecCCCceEEeCCce
Q 028960 84 VDEKPHSVFTRDGNDL 99 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL 99 (201)
|.+..+..++-+...+
T Consensus 330 ~~v~~P~~ls~~qk~~ 345 (372)
T PRK14300 330 IHVEVPKNLSKRQREL 345 (372)
T ss_pred EEEECCCCCCHHHHHH
Confidence 9999887766554433
No 47
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=2.7e-10 Score=99.62 Aligned_cols=83 Identities=11% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.||+++++|||.||++|+++.|... .| +.++|+||+|+++|+.++++|+|++.++. .+|||||+
T Consensus 255 R~G~DL~~~~~Isl~eAllG~~i~v~tL------dG------~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~ 322 (369)
T PRK14288 255 REGCDLFIEAPVFFTTIALGHTIKVPSL------KG------DELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVE 322 (369)
T ss_pred EeCCEEEEEEecCHHHHhcCCEEEeecC------CC------CEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEE
Confidence 5699999999999999999999999888 67 46899999999999999999999987665 47999999
Q ss_pred EEecCCCceEEeCCce
Q 028960 84 VDEKPHSVFTRDGNDL 99 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL 99 (201)
|.+..++.++.+...+
T Consensus 323 ~~v~~P~~ls~~q~~~ 338 (369)
T PRK14288 323 LQVIYPKSLNKEQQEL 338 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 9999887776555433
No 48
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=1.3e-10 Score=101.70 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=72.5
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.++++|||.||++|.++.|... .| .++|+||+|+++|++++++|+|++.+++ .+|||||+
T Consensus 261 r~G~DL~~~~~Isl~eAl~G~~~~v~tl------dG-------~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~ 327 (373)
T PRK14301 261 RQGQDLVVTQEISFVQAALGDRIEVPTL------DD-------PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVE 327 (373)
T ss_pred eecCcEEEEEEecHHHHhCCCeEEEecC------Cc-------cEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEE
Confidence 5699999999999999999999999877 56 4899999999999999999999987654 58999999
Q ss_pred EEecCCCceEEeCCceEE
Q 028960 84 VDEKPHSVFTRDGNDLIV 101 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL~~ 101 (201)
|.+..++.++.+..+++.
T Consensus 328 ~~V~~P~~l~~~q~~~l~ 345 (373)
T PRK14301 328 VSVVTPTKLTKRQEELLR 345 (373)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 999988777665544443
No 49
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.11 E-value=1.3e-10 Score=101.00 Aligned_cols=82 Identities=13% Similarity=0.266 Sum_probs=71.8
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
++|.|+.+.+.|||.||+.|+++.|... .| .++|.||+|+++|++++++|+|++.+++ .+|||||+
T Consensus 264 r~g~DL~~~~~isl~eAl~G~~~~i~~l------dG-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~ 330 (354)
T TIGR02349 264 RDGNDLYIEVPISFTQAILGGEIEVPTL------DG-------DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVT 330 (354)
T ss_pred EecCCEEEEEEeCHHHHhCCCeEEEecC------Cc-------eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEE
Confidence 4689999999999999999999998776 56 6999999999999999999999987655 68999999
Q ss_pred EEecCCCceEEeCCce
Q 028960 84 VDEKPHSVFTRDGNDL 99 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL 99 (201)
|.+..++.++.+..++
T Consensus 331 ~~v~~P~~l~~~~~~~ 346 (354)
T TIGR02349 331 VKVETPKNLSKEQKEL 346 (354)
T ss_pred EEEECCCCCCHHHHHH
Confidence 9999888777665443
No 50
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=3.9e-10 Score=99.29 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=68.6
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIV 84 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i 84 (201)
|+|.|+.++++|||.||++|.++.|... .| .++|+||+|+++|++++++|+|++..++.+|||||+|
T Consensus 290 R~G~DL~~~~~Isl~eAl~G~~~~v~~l------dg-------~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~ 356 (392)
T PRK14279 290 RDGDDLTVTVPVSFTELALGSTLSVPTL------DG-------PVGVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTV 356 (392)
T ss_pred eecCcEEEEEEccHHHHcCCceEEEEcC------Cc-------eEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEE
Confidence 5699999999999999999999998876 56 5899999999999999999999987555789999999
Q ss_pred EecCCCceEEeC
Q 028960 85 DEKPHSVFTRDG 96 (201)
Q Consensus 85 ~v~~~~~f~r~g 96 (201)
.+.-++.+..+.
T Consensus 357 ~v~~P~~Ls~~q 368 (392)
T PRK14279 357 KVAVPPNLDGAA 368 (392)
T ss_pred EEECCCCCCHHH
Confidence 998776554433
No 51
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=4.6e-10 Score=98.73 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=69.1
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIV 84 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i 84 (201)
|+|.|+.++++|||.||++|++++|... .| +.++|+||+|+++|++++++|+|++..++.+|||||+|
T Consensus 283 R~G~DL~~~~~Isl~eAl~G~~~~I~tl------dG------~~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~ 350 (389)
T PRK14295 283 RSGDNLTVTVPVTFPEAALGAEVRVPTL------GG------PPVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTV 350 (389)
T ss_pred EecCCEEEEEeecHHHHhCCCeEEEECC------CC------CEEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEE
Confidence 5699999999999999999999999776 56 57999999999999999999999986555689999999
Q ss_pred EecCCCceEEeC
Q 028960 85 DEKPHSVFTRDG 96 (201)
Q Consensus 85 ~v~~~~~f~r~g 96 (201)
.+.-++..+.+.
T Consensus 351 ~v~~P~~Ls~~q 362 (389)
T PRK14295 351 EVAVPKDLSGKA 362 (389)
T ss_pred EEECCCCCCHHH
Confidence 998666544433
No 52
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=2.3e-10 Score=100.11 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=71.3
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.+++.|||.||++|+++.|... .| +.++|+||+|+++|++++++|+|++..+. .+|||||+
T Consensus 267 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG------~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~ 334 (372)
T PRK14286 267 RQGNDLILVRKISLAQAILGAEIEVPTI------DG------KKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVI 334 (372)
T ss_pred EecCCEEEEEEECHHHHhCCCEEEEeCC------CC------CEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEE
Confidence 4689999999999999999999999876 67 47999999999999999999999986554 57999999
Q ss_pred EEecCCCceEEeCCce
Q 028960 84 VDEKPHSVFTRDGNDL 99 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL 99 (201)
|.+.-+..++.+..++
T Consensus 335 ~~V~~P~~Ls~~qk~~ 350 (372)
T PRK14286 335 VKIEIPKKITRRQREL 350 (372)
T ss_pred EEEECCCCCCHHHHHH
Confidence 9998777665555443
No 53
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=6.9e-10 Score=97.47 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=66.3
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
++|.|+.+++.|||+||++|+++.|... .| +.++|.||+|+++|++++++|+|++.++. .+|||||+
T Consensus 272 r~G~DL~~~~~Isl~eAl~G~~~~i~~l------dG------~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~ 339 (382)
T PRK14291 272 RRGDNLYLDVNITVAEAVLGTELEVPLL------DG------KKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVR 339 (382)
T ss_pred eecCCeEEEEEeeHHHHhCCCEEEEecC------CC------CEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 4699999999999999999999999886 67 57899999999999999999999987654 68999999
Q ss_pred EEecCCC
Q 028960 84 VDEKPHS 90 (201)
Q Consensus 84 i~v~~~~ 90 (201)
|.+.-+.
T Consensus 340 ~~V~~P~ 346 (382)
T PRK14291 340 VHIDVPK 346 (382)
T ss_pred EEEEeCC
Confidence 9997654
No 54
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=7.9e-10 Score=97.04 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=68.7
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.++++|||.||++|.+++|... .| .++|.||+|+++|+.++++|+|++..+. .+|||||+
T Consensus 267 R~G~DL~~~~~Isl~eAl~G~~~~v~tl------dg-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~ 333 (380)
T PRK14276 267 RDGSTIYYTLPISFVQAALGDTVEVPTV------HG-------DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVT 333 (380)
T ss_pred eecceEEEEEecCHHHHhCCCeEEEEcC------CC-------cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEE
Confidence 5699999999999999999999999887 56 4899999999999999999999987654 57999999
Q ss_pred EEecCCCceEEeC
Q 028960 84 VDEKPHSVFTRDG 96 (201)
Q Consensus 84 i~v~~~~~f~r~g 96 (201)
|.+.-+..++.+.
T Consensus 334 ~~v~~P~~l~~~q 346 (380)
T PRK14276 334 VNIVTPTKLNDAQ 346 (380)
T ss_pred EEEECCCCCCHHH
Confidence 9998776554443
No 55
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=2.6e-10 Score=99.92 Aligned_cols=85 Identities=16% Similarity=0.240 Sum_probs=75.2
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC--CCeeEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV--KPADVVF 82 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~--~~GDl~v 82 (201)
++|.|+.++++|||.||+.|.++.|... .| .++|+||+|+++|++++++|+|.+.+++ ..|||||
T Consensus 264 r~g~DL~~~~~Isl~eAl~G~~~~i~~l------dG-------~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v 330 (374)
T PRK14293 264 RDGINILSEIKISYLQAILGDTLEVDTV------DG-------PVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLI 330 (374)
T ss_pred hhhhceEEEeccCHHHHhCCCEEEecCC------CC-------CEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEE
Confidence 4689999999999999999999999987 67 4789999999999999999999986654 4799999
Q ss_pred EEEecCCCceEEeCCceEEE
Q 028960 83 IVDEKPHSVFTRDGNDLIVT 102 (201)
Q Consensus 83 ~i~v~~~~~f~r~g~dL~~~ 102 (201)
+|.+..++.+++++.+++.+
T Consensus 331 ~~~v~~P~~l~~~~~~l~~~ 350 (374)
T PRK14293 331 TVKVKIPTRISDEERELLEK 350 (374)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 99999998888888777654
No 56
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=1e-09 Score=96.84 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=68.3
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.++++|||.||+.|.++.|... .| .++|+||+|+++|++++++|+|++.... .+|||||+
T Consensus 283 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dg-------~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~ 349 (397)
T PRK14281 283 RNGDDVIYNLAVSYPDLVLGTKVEVPTL------DG-------AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVR 349 (397)
T ss_pred EecCCEEEEEEecHHHHhcCCeEEeecC------Cc-------cEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEE
Confidence 5699999999999999999999999887 56 4899999999999999999999986554 57999999
Q ss_pred EEecCCCceEEeC
Q 028960 84 VDEKPHSVFTRDG 96 (201)
Q Consensus 84 i~v~~~~~f~r~g 96 (201)
|.|.-+..++.+.
T Consensus 350 ~~V~~P~~Ls~~q 362 (397)
T PRK14281 350 VNVFVPKEVSHQD 362 (397)
T ss_pred EEEEcCCCCCHHH
Confidence 9998666554443
No 57
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=1.1e-09 Score=96.03 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=68.2
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+++++.|||.||+.|+++.|... .| .++|+||+|+++|++++++|+|++...+ .+|||||+
T Consensus 264 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dg-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~ 330 (376)
T PRK14280 264 RDGDDIYCEMPLTFAQAALGDEIEVPTL------HG-------KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVV 330 (376)
T ss_pred EecCCEEEEEecCHHHHhCCCEEEEecC------Cc-------eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEE
Confidence 5699999999999999999999999877 56 4899999999999999999999986544 68999999
Q ss_pred EEecCCCceEEeC
Q 028960 84 VDEKPHSVFTRDG 96 (201)
Q Consensus 84 i~v~~~~~f~r~g 96 (201)
|.+..++.++.+.
T Consensus 331 ~~v~~P~~Ls~~q 343 (376)
T PRK14280 331 VRVVTPTKLTDRQ 343 (376)
T ss_pred EEEECCCCCCHHH
Confidence 9998776554433
No 58
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.9e-10 Score=97.49 Aligned_cols=83 Identities=13% Similarity=0.251 Sum_probs=72.6
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|.|.||+.+++|||.+|++|.+++|+.. .| .++++||+|++.|+.++++|+|++...+ ..|||||.
T Consensus 261 R~g~dL~~~~~Is~~~AalG~~i~vptl------~g-------~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~ 327 (371)
T COG0484 261 RDGDDLYCEVPISFTEAALGGEIEVPTL------DG-------RVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVR 327 (371)
T ss_pred ECCCceEeccccCHHHHhcCCEEEEEec------CC-------CEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEE
Confidence 5689999999999999999999999988 67 4999999999999999999999997655 67999999
Q ss_pred EEecCCCceEEeCCceE
Q 028960 84 VDEKPHSVFTRDGNDLI 100 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL~ 100 (201)
+.|..+..+......|+
T Consensus 328 v~v~~P~~ls~~q~~lL 344 (371)
T COG0484 328 VKVETPKNLSDEQKELL 344 (371)
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 99998877665554443
No 59
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.01 E-value=1.4e-09 Score=92.89 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=67.6
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIV 84 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i 84 (201)
+.|.|+.++++|||.+|++|+++.|... .| .++|+||+|+.+|++++++|+|.+.++ ..|||||++
T Consensus 206 r~g~DL~~~~~Isl~~al~G~~~~i~~~------~g-------~v~v~ip~g~~~g~~~ri~g~G~p~~~-~~GdL~v~~ 271 (306)
T PRK10266 206 IVGQDLEIVVPLAPWEAALGAKVTVPTL------KE-------SILLTIPPGSQAGQRLRVKGKGLVSKK-QTGDLYAVL 271 (306)
T ss_pred EeCCceEEEEecCHHHHhCCCEEEeeCC------Cc-------cEEEEeCCCcCCCCEEEECCCCCCCCC-CCCCEEEEE
Confidence 4589999999999999999999999886 56 589999999999999999999997654 579999999
Q ss_pred EecCCCceEEe
Q 028960 85 DEKPHSVFTRD 95 (201)
Q Consensus 85 ~v~~~~~f~r~ 95 (201)
.+..++.+.-+
T Consensus 272 ~v~~P~~l~~~ 282 (306)
T PRK10266 272 KIVMPPKPDEK 282 (306)
T ss_pred EEECCCCCCHH
Confidence 99988765543
No 60
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=1.4e-09 Score=95.41 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=68.0
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.+++.|||.||+.|+++.|... .| .++|.||+|+++|++++++|+|.+..++ .+|||||+
T Consensus 269 R~G~DL~~~~~Isl~eAl~G~~~~i~~l------dg-------~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~ 335 (380)
T PRK14297 269 RKGFDIYIDKHISFAKAALGTEIKVPTV------DG-------EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVT 335 (380)
T ss_pred EeCCCEEEEEEeCHHHHhCCCcEEEEcC------CC-------cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEE
Confidence 4699999999999999999999999887 56 4899999999999999999999986554 57999999
Q ss_pred EEecCCCceEEeC
Q 028960 84 VDEKPHSVFTRDG 96 (201)
Q Consensus 84 i~v~~~~~f~r~g 96 (201)
|.+.-+..++.+.
T Consensus 336 ~~v~~P~~ls~~q 348 (380)
T PRK14297 336 VIVDIPKKLNSKQ 348 (380)
T ss_pred EEEEcCCCCCHHH
Confidence 9998666554433
No 61
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=2e-09 Score=94.44 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=67.8
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.++++|||.||+.|+++.|... .+ ..++|.||+|+++|+.++++|+|++.... .+|||||+
T Consensus 260 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------d~------~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~ 327 (378)
T PRK14278 260 RDGDDLHCTVSVPMVDAALGTTVTVEAI------LD------GPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAH 327 (378)
T ss_pred EcCCCEEEEEecCHHHHhcCCeEEEecC------CC------CeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEE
Confidence 5799999999999999999999998864 23 37899999999999999999999986544 58999999
Q ss_pred EEecCCCceEEeC
Q 028960 84 VDEKPHSVFTRDG 96 (201)
Q Consensus 84 i~v~~~~~f~r~g 96 (201)
|.+.-+..++.+.
T Consensus 328 ~~V~~P~~Ls~~q 340 (378)
T PRK14278 328 VEVVVPTRLDHED 340 (378)
T ss_pred EEEEcCCCCCHHH
Confidence 9998666554443
No 62
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=7e-10 Score=97.08 Aligned_cols=83 Identities=11% Similarity=0.178 Sum_probs=71.3
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
++|.|+...++|||.||+.|+++.|... .| ..+|.||+|+++|++++++|+|++.+++ .+|||||+
T Consensus 259 r~g~dL~~~~~isl~eAl~G~~~~i~tl------dG-------~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~ 325 (371)
T PRK14292 259 REQEHLIYEARIGFAKAALGGQITVPTL------DG-------PQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVE 325 (371)
T ss_pred cchhceeEEeccCHHHHhCCCeEEEECC------CC-------CEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEE
Confidence 5799999999999999999999999876 56 3479999999999999999999987654 58999999
Q ss_pred EEecCCCceEEeCCceE
Q 028960 84 VDEKPHSVFTRDGNDLI 100 (201)
Q Consensus 84 i~v~~~~~f~r~g~dL~ 100 (201)
|.+..++.++.+...|+
T Consensus 326 ~~v~~P~~l~~~q~~ll 342 (371)
T PRK14292 326 YEIAVPKQLSPEAREAL 342 (371)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 99998887766554443
No 63
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=2.7e-09 Score=93.82 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=67.7
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
|+|.|+.++++|||.||++|+++.|... .| .++|.||+|+++|++++++|+|++..+. .+|||||+
T Consensus 276 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~ 342 (386)
T PRK14277 276 REGYNVYLEMPITFTDAALGGEIEIPTL------DG-------KVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVK 342 (386)
T ss_pred EecCCEEEEEEcCHHHHhCCCEEEEEcC------CC-------CEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 5689999999999999999999999887 67 4899999999999999999999986544 57999999
Q ss_pred EEecCCCceEEeC
Q 028960 84 VDEKPHSVFTRDG 96 (201)
Q Consensus 84 i~v~~~~~f~r~g 96 (201)
|.|.-++..+.+.
T Consensus 343 ~~V~~P~~Ls~~q 355 (386)
T PRK14277 343 VYIEVPKKLTEKQ 355 (386)
T ss_pred EEEEeCCCCCHHH
Confidence 9998665444433
No 64
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.93 E-value=3.4e-09 Score=94.03 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=68.5
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCC--CCCCCEEEEccccccCCCC--CCeeE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPG--WKKGTRITFEEKGNVQQNV--KPADV 80 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G--~~~G~~i~l~g~G~~~~~~--~~GDl 80 (201)
|.|.||+++++|||.||++|.++.|... .| +.++|+||+| +++|+.++++|+|++..+. .+|||
T Consensus 271 R~G~DL~~~~~Isl~eAllG~~i~I~tL------dG------~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL 338 (421)
T PTZ00037 271 REGGDLFITKKISLYEALTGFVFYITHL------DG------RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNL 338 (421)
T ss_pred EeCCeEEEEEeCCHHHHhcCCEEEeeCC------CC------CeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCE
Confidence 5699999999999999999999999887 77 4689999999 9999999999999986543 57999
Q ss_pred EEEEEecCC--CceEEeC
Q 028960 81 VFIVDEKPH--SVFTRDG 96 (201)
Q Consensus 81 ~v~i~v~~~--~~f~r~g 96 (201)
||+|.|.-+ ..++.+.
T Consensus 339 ~V~~~V~~P~~~~Ls~~q 356 (421)
T PTZ00037 339 YVTFEVIFPVDRKFTNEE 356 (421)
T ss_pred EEEEEEEcCCCCCCCHHH
Confidence 999999866 5554433
No 65
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=4.9e-09 Score=91.99 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=66.5
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
+.|.|+.+++.|||.||+.|.++.|... .| .++|.||+|+++|++++++|+|.+.... .+|||||+
T Consensus 267 r~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~ 333 (378)
T PRK14283 267 REGANLYYEKPISFVQAALGDTVDVPTI------DG-------PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVK 333 (378)
T ss_pred EecCCEEEEEecCHHHHhcCCeEEEEcC------Cc-------eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 4589999999999999999999999876 56 6899999999999999999999986544 67999999
Q ss_pred EEecCCCceEEe
Q 028960 84 VDEKPHSVFTRD 95 (201)
Q Consensus 84 i~v~~~~~f~r~ 95 (201)
|++.-++..+.+
T Consensus 334 ~~v~~P~~l~~~ 345 (378)
T PRK14283 334 VKVVVPKKLSPK 345 (378)
T ss_pred EEEEeCCCCCHH
Confidence 999765544433
No 66
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=4.6e-09 Score=91.95 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=66.4
Q ss_pred CCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCC-C-CCCeeEEEEE
Q 028960 7 APPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQ-N-VKPADVVFIV 84 (201)
Q Consensus 7 g~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~-~-~~~GDl~v~i 84 (201)
|.||+++++|||.||++|.++.|... +| .++|+||+|+++|+.++++|+|++.. . +.+|||||+|
T Consensus 273 G~DL~~~~~Isl~eAllG~~~~i~tl------dG-------~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~ 339 (372)
T PRK14296 273 NNDILMTYNISYLDAILGNEIIIKTL------DG-------DIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKV 339 (372)
T ss_pred CCcEEEEEecCHHHHhCCCEEEeeCC------CC-------CEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEE
Confidence 79999999999999999999999888 77 38999999999999999999999733 2 2579999999
Q ss_pred EecCCCceEEeC
Q 028960 85 DEKPHSVFTRDG 96 (201)
Q Consensus 85 ~v~~~~~f~r~g 96 (201)
.|.-++.++.+.
T Consensus 340 ~V~~P~~Ls~~q 351 (372)
T PRK14296 340 NIVVPKNLSKKE 351 (372)
T ss_pred EEECCCCCCHHH
Confidence 998766555443
No 67
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=6.4e-09 Score=91.49 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=66.9
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC-CCeeEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV-KPADVVFI 83 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~GDl~v~ 83 (201)
+++.|+.+++.|||.||+.|+++.|... .| .++|.||+|+++|++++++|+|.+.+++ .+|||||+
T Consensus 275 r~g~DL~~~~~Isl~eAl~G~~~~i~~l------dg-------~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~ 341 (386)
T PRK14289 275 RDENDLIYNLLLSVPTAALGGAVEVPTI------DG-------KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVN 341 (386)
T ss_pred ccccceeEEeccCHHHHhCCCeEEeecC------Cc-------eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEE
Confidence 4689999999999999999999999987 56 5899999999999999999999986654 68999999
Q ss_pred EEecCCCceEE
Q 028960 84 VDEKPHSVFTR 94 (201)
Q Consensus 84 i~v~~~~~f~r 94 (201)
|.+.-+...+.
T Consensus 342 ~~v~~P~~l~~ 352 (386)
T PRK14289 342 VSVYIPETLSK 352 (386)
T ss_pred EEEEeCCCCCH
Confidence 99986554443
No 68
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.83 E-value=1e-08 Score=94.94 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=63.2
Q ss_pred CCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEE
Q 028960 5 KKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIV 84 (201)
Q Consensus 5 ~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i 84 (201)
|+|.||++.+.|||.+|++|+++.|... .| .++|.||+|+++|+.++++|+|++..++.+|||||+|
T Consensus 743 RdGdDL~~~v~ISL~EALLGgtIeIpTL------DG-------rVkLkIPpgTqpGqvLRIkGKGMP~~~~~RGDLyV~f 809 (871)
T TIGR03835 743 IKNDGLHVAALVDPLVAYNGGIIDVFGP------NK-------LFNVRIPGGIKVNDQVIFKDLGLTKTKYDKGSLIVHL 809 (871)
T ss_pred EECCeEEEEEecCHHHHhcCCEEEeeCC------CC-------CEEEeeCCCCCCCcEEEECCCCCCCCCCCCCCEEEEE
Confidence 5799999999999999999999999888 67 4899999999999999999999985444689999999
Q ss_pred Eec
Q 028960 85 DEK 87 (201)
Q Consensus 85 ~v~ 87 (201)
.+.
T Consensus 810 ~V~ 812 (871)
T TIGR03835 810 YYS 812 (871)
T ss_pred EEe
Confidence 875
No 69
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.6e-07 Score=76.94 Aligned_cols=142 Identities=49% Similarity=0.877 Sum_probs=121.6
Q ss_pred CCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcE-EEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEEEe
Q 028960 8 PPIENRLPCTLEELYKGTTKKIKISREIVDINGNT-IKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDE 86 (201)
Q Consensus 8 ~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~-~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i~v 86 (201)
..+...+.+++++.+.|+.+...+.+......+.. ........+.+.+++..|+.+.....|...++..+-++++.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~ 239 (306)
T KOG0714|consen 160 PPVEHPLRVSLEDLYKGESKKMKISRQSFTSNGREGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDE 239 (306)
T ss_pred CCccCCcceeHHHhccccceeeecccccccCCcccccCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEec
Confidence 33555566699999999999999987765544432 45567789999999999999999999987776678889999999
Q ss_pred cCCCceEEeCCceEEE--EEeCHHHHhCCCcEEEeCCCCcEEEEeeC-CccCCCCEEEEcCCCccC
Q 028960 87 KPHSVFTRDGNDLIVT--RTITLGEALEGYPVRLTTLDGRSLNIPID-NVIHPNYEETVPREGMPI 149 (201)
Q Consensus 87 ~~~~~f~r~g~dL~~~--~~i~~~~al~G~~~~i~~l~G~~~~i~vp-~~~~~g~~~~i~g~G~p~ 149 (201)
.+|..|.+.+.+|... ..+++.+|++|....+++++|....+.+. ....++....+++.|+|.
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 240 KPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred CCcccccCCCccceecccceeehhhhhcCcceeeecccCccccCcccccccCCCceeeecCCCCCC
Confidence 9999998899999999 89999999999999999999987777777 788999999999999985
No 70
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.7e-06 Score=72.07 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=81.4
Q ss_pred CCCeEEEEeeehHhHhcCcEEEEEEeEEEEc---------------------cCCc------------------------
Q 028960 7 APPIENRLPCTLEELYKGTTKKIKISREIVD---------------------INGN------------------------ 41 (201)
Q Consensus 7 g~di~~~l~isL~e~~~G~~~~v~~~r~~~~---------------------g~G~------------------------ 41 (201)
+.+..+.+.++|++|..|+.+.+.+.....| |.|.
T Consensus 137 ~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~ 216 (288)
T KOG0715|consen 137 DKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVL 216 (288)
T ss_pred CcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCcccccccccCCcceeecccccccceec
Confidence 5688888999999999999888888877654 1120
Q ss_pred -----------EEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEEEecCCCceEEeCCceEEEEEeCHH
Q 028960 42 -----------TIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLG 108 (201)
Q Consensus 42 -----------~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dL~~~~~i~~~ 108 (201)
.+...+.+.+.+|+|+.++.++++.+.+.. ||++.+.|.+++.|+|+|.|++++..|++.
T Consensus 217 ~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~ 287 (288)
T KOG0715|consen 217 RDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-------DLFVRLIVAKSPSFRREGKDILYDAIISFT 287 (288)
T ss_pred cchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-------eEEEEEEeccCcccccccCccccccccccc
Confidence 356778899999999999999999998753 999999999999999999999999988864
No 71
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4.3e-05 Score=65.63 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=67.0
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCC--CCCCCEEEEccccccCCCCCCeeEE
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPG--WKKGTRITFEEKGNVQQNVKPADVV 81 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G--~~~G~~i~l~g~G~~~~~~~~GDl~ 81 (201)
-|+|+|+...++++|.||..|..+.+... +| +.+++.+++| +.+|+..++.|+|++......||||
T Consensus 248 ~Rrg~dL~~~~~i~l~eal~G~~~~~~~l------dG------r~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~ly 315 (337)
T KOG0712|consen 248 DRRGSDLYRKLTISLVEALCGFQRVWETL------DG------RLLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLY 315 (337)
T ss_pred eecccccceeeecchhhccccceEEEEcc------CC------ceEEEecCCCceeChhHEEeecCCCcccccCCCCcEE
Confidence 46799999999999999999988888754 67 6899999999 9999999999999997776799999
Q ss_pred EEEEecCCC
Q 028960 82 FIVDEKPHS 90 (201)
Q Consensus 82 v~i~v~~~~ 90 (201)
+.++|.-++
T Consensus 316 i~~~v~fp~ 324 (337)
T KOG0712|consen 316 IKFEVKFPK 324 (337)
T ss_pred EEEEEEcCC
Confidence 999998665
No 72
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=90.75 E-value=0.89 Score=35.57 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=66.1
Q ss_pred CeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEEEecC
Q 028960 9 PIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKP 88 (201)
Q Consensus 9 di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i~v~~ 88 (201)
+....+.+++.+++.+....+... .. ......++.|+..+..+++.+.+.... ...++.+..+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 216 (237)
T COG2214 150 DLAANLADNFEEALAGVKKAVARL------LG------KALKSTIKAGALEGKALRLKGLLKSAR-GALGKARLKELSKR 216 (237)
T ss_pred ceeeeeeccHHHHhcCcceeeecc------cc------ccccccCCcccccCceeeecccCCcCC-CCcccceeeeeccC
Confidence 577788888999998888777765 22 344489999999999999999987766 67899999999999
Q ss_pred CCceEEeCCce
Q 028960 89 HSVFTRDGNDL 99 (201)
Q Consensus 89 ~~~f~r~g~dL 99 (201)
++.|...+.++
T Consensus 217 ~~~~~~~~~~~ 227 (237)
T COG2214 217 HPPFALEGDDK 227 (237)
T ss_pred CCCccccCCcc
Confidence 99999999998
No 73
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=60.05 E-value=12 Score=23.58 Aligned_cols=22 Identities=27% Similarity=0.700 Sum_probs=17.5
Q ss_pred CCCccEEEEEEEECCCC--CCHHH
Q 028960 154 SKRGNLKIKFNIKFPPS--LTAEQ 175 (201)
Q Consensus 154 ~~~GDL~v~~~v~~P~~--l~~~~ 175 (201)
.+.||+-|-|+|.+|+- +|.++
T Consensus 25 Sk~gDiTv~f~v~LPEiFtls~~e 48 (54)
T PF12991_consen 25 SKNGDITVAFRVELPEIFTLSEAE 48 (54)
T ss_pred ecCCCEEEEEEecCCeeEEechhH
Confidence 35799999999999995 44444
No 74
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=58.22 E-value=11 Score=31.55 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=29.8
Q ss_pred EEEeCHHHHhCC-CcEEEeCCCCcEEEEeeCC-----ccCCCCEEEEc
Q 028960 102 TRTITLGEALEG-YPVRLTTLDGRSLNIPIDN-----VIHPNYEETVP 143 (201)
Q Consensus 102 ~~~i~~~~al~G-~~~~i~~l~G~~~~i~vp~-----~~~~g~~~~i~ 143 (201)
+..|-||+|+.| |..+|+|.|+..=.+.+.| -.--.+.+||.
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRly 66 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLY 66 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEE
Confidence 367889999999 7999999998755566654 11223566664
No 75
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=57.64 E-value=17 Score=23.39 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Q 028960 162 KFNIKFPPSLTAEQKAGIKFLQLL 185 (201)
Q Consensus 162 ~~~v~~P~~l~~~~~~~l~~~~~~ 185 (201)
..+..||.+||+.|+..+-.+++.
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~ 40 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASR 40 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHH
Confidence 567889999999999999888763
No 76
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=48.63 E-value=72 Score=24.46 Aligned_cols=72 Identities=19% Similarity=0.152 Sum_probs=59.1
Q ss_pred ceEEEEEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCC
Q 028960 98 DLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLT 172 (201)
Q Consensus 98 dL~~~~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~ 172 (201)
+....+..+..++..+....+.-.........++++...+..+++.+.+.... +..|+.+.++.+.......
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 221 (237)
T COG2214 150 DLAANLADNFEEALAGVKKAVARLLGKALKSTIKAGALEGKALRLKGLLKSAR---GALGKARLKELSKRHPPFA 221 (237)
T ss_pred ceeeeeeccHHHHhcCcceeeeccccccccccCCcccccCceeeecccCCcCC---CCcccceeeeeccCCCCcc
Confidence 67888999999999998888877776545578899999999999999998754 5689999999888766543
No 77
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=46.66 E-value=52 Score=20.26 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=28.1
Q ss_pred CCcEEEeCCCCcEEEEeeCCccCCCCEEEEcCCCcc
Q 028960 113 GYPVRLTTLDGRSLNIPIDNVIHPNYEETVPREGMP 148 (201)
Q Consensus 113 G~~~~i~~l~G~~~~i~vp~~~~~g~~~~i~g~G~p 148 (201)
+....|-|.||.-++++.++..+-|+.+.+.-.-..
T Consensus 5 ~~~aiVlT~dGeF~~ik~~~~~~vG~eI~~~~~~~~ 40 (56)
T PF12791_consen 5 KKYAIVLTPDGEFIKIKRKPGMEVGQEIEFDEKDII 40 (56)
T ss_pred CCEEEEEcCCCcEEEEeCCCCCcccCEEEEechhhc
Confidence 456778899998888888888888988887765443
No 78
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=40.79 E-value=30 Score=27.51 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=28.4
Q ss_pred CcEEEEEE--eEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEcc
Q 028960 24 GTTKKIKI--SREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEE 67 (201)
Q Consensus 24 G~~~~v~~--~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g 67 (201)
|.-+.+.- +...|.|+| .+.......+++ .|+.+|++|++.-
T Consensus 107 G~G~~i~~~~~C~~C~G~G-~v~~~~~~~~k~-~g~~~g~~it~~~ 150 (186)
T TIGR02642 107 GTGLIQRRQRECDTCAGTG-RFRPTVEDLLKS-FGVDSGAAIVLKD 150 (186)
T ss_pred CeeEEecCCCCCCCCCCcc-EEeeeEEEEEEe-eeccCCceeeHHH
Confidence 44444442 222334778 677777888888 9999999998753
No 79
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=40.14 E-value=46 Score=21.09 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=14.0
Q ss_pred EEEEeCCCCCCCCEEEEccc
Q 028960 49 LTVDVKPGWKKGTRITFEEK 68 (201)
Q Consensus 49 ~~V~Ip~G~~~G~~i~l~g~ 68 (201)
++|.+|.-+..|+.|++.-.
T Consensus 30 ~~i~VP~FI~~Gd~I~VdT~ 49 (56)
T PF09285_consen 30 AEIQVPLFIEEGDKIKVDTR 49 (56)
T ss_dssp -EEEEETT--TT-EEEEETT
T ss_pred CEEEccceecCCCEEEEECC
Confidence 78999999999999998654
No 80
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=40.08 E-value=47 Score=21.21 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhhc
Q 028960 163 FNIKFPPSLTAEQKAGIKFLQLLN 186 (201)
Q Consensus 163 ~~v~~P~~l~~~~~~~l~~~~~~~ 186 (201)
-...||..||+.++..+-++++..
T Consensus 17 ~~l~Fpp~ls~~eR~~vH~~a~~~ 40 (59)
T cd06007 17 EEYEFPSSLTNHERAVIHRLCRKL 40 (59)
T ss_pred cEEEcCCCCCHHHHHHHHHHHHHc
Confidence 467899999999999999988754
No 81
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=39.00 E-value=14 Score=22.61 Aligned_cols=18 Identities=22% Similarity=0.010 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHhhcC
Q 028960 170 SLTAEQKAGIKFLQLLNR 187 (201)
Q Consensus 170 ~l~~~~~~~l~~~~~~~~ 187 (201)
.+|.+|.+.|+++.+.+.
T Consensus 6 ~~t~~q~~~L~~~f~~~~ 23 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQENP 23 (57)
T ss_dssp SSSHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 478999999999888753
No 82
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=37.46 E-value=49 Score=21.06 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.9
Q ss_pred EEECCCCCCHHHHHHHHHHHhhcC
Q 028960 164 NIKFPPSLTAEQKAGIKFLQLLNR 187 (201)
Q Consensus 164 ~v~~P~~l~~~~~~~l~~~~~~~~ 187 (201)
.+.||.+|+..|+..+-++++..+
T Consensus 19 ~l~F~p~ls~~eR~~vH~lA~~~g 42 (60)
T cd02641 19 ELEFPPTLSSHDRLLVHELAEELG 42 (60)
T ss_pred cEECCCCCCHHHHHHHHHHHHHcC
Confidence 578999999999999999988653
No 83
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal. These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.
Probab=36.87 E-value=51 Score=20.88 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.4
Q ss_pred EEEEeCCCCCCCCEEEEccc
Q 028960 49 LTVDVKPGWKKGTRITFEEK 68 (201)
Q Consensus 49 ~~V~Ip~G~~~G~~i~l~g~ 68 (201)
++|.+|.-+..|+.|++.-.
T Consensus 30 ~~i~VP~FI~~Gd~I~V~T~ 49 (56)
T smart00841 30 AVVQVPLFINEGDKIKVDTR 49 (56)
T ss_pred CEEEcCCcccCCCEEEEECC
Confidence 78999999999999988654
No 84
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=36.03 E-value=57 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhhc
Q 028960 163 FNIKFPPSLTAEQKAGIKFLQLLN 186 (201)
Q Consensus 163 ~~v~~P~~l~~~~~~~l~~~~~~~ 186 (201)
-.+.||..||+.+++.+-++++..
T Consensus 18 ~~l~f~p~lt~~eR~~vH~~a~~~ 41 (60)
T cd02640 18 RDMVFSPEFSKEERALIHQIAQKY 41 (60)
T ss_pred ceEEcCCCCCHHHHHHHHHHHHHc
Confidence 467899999999999999988754
No 85
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.98 E-value=62 Score=29.15 Aligned_cols=84 Identities=10% Similarity=0.034 Sum_probs=59.0
Q ss_pred eEEEEEEecCCCceEEeCCceEEEEEeCHHHHhCCCcEEEeCCCCcEEEEeeCCccCCCCEE--EEcCCCccCCCCCCCC
Q 028960 79 DVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIPIDNVIHPNYEE--TVPREGMPIQNEPSKR 156 (201)
Q Consensus 79 Dl~v~i~v~~~~~f~r~g~dL~~~~~i~~~~al~G~~~~i~~l~G~~~~i~vp~~~~~g~~~--~i~g~G~p~~~~~~~~ 156 (201)
-.|+..++.+++-|.-.+-.+++.-.=.+.+-=.|....=++-+++ ++|-+++-++-|.++ .|-.+|||... -+..
T Consensus 370 pkve~~ev~edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~~k-~qlLvradtnlGnilLN~Ll~kgMkctr-~gkn 447 (487)
T KOG2724|consen 370 PKVETVEVQEDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDRGK-FQLLVRADTNLGNILLNSLLNKGMKCTR-VGKN 447 (487)
T ss_pred CeeEeecccCccchhccccceEEEecccccccccceeecccccccc-eeeeehhccchhHHHHHHhhcCCCccee-ccCC
Confidence 3577788888887777777777666556666545444333334464 888899888888766 36789999876 4778
Q ss_pred ccEEEEEE
Q 028960 157 GNLKIKFN 164 (201)
Q Consensus 157 GDL~v~~~ 164 (201)
++||+.+-
T Consensus 448 nvlIvcvp 455 (487)
T KOG2724|consen 448 NVLIVCVP 455 (487)
T ss_pred ceEEEEeC
Confidence 88888764
No 86
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=33.65 E-value=60 Score=20.57 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.7
Q ss_pred EEEEeCCCCCCCCEEEEccc
Q 028960 49 LTVDVKPGWKKGTRITFEEK 68 (201)
Q Consensus 49 ~~V~Ip~G~~~G~~i~l~g~ 68 (201)
++|.+|.-+..|+.|++.-.
T Consensus 30 ~~i~VP~FI~~Gd~I~V~T~ 49 (56)
T cd05794 30 AEVQVPLFIKEGEKIKVDTR 49 (56)
T ss_pred CEEEcCCeecCCCEEEEECC
Confidence 78999999999999998754
No 87
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=33.21 E-value=72 Score=20.30 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHhhcCC-----------------CCcchhccccCCC
Q 028960 170 SLTAEQKAGIKFLQLLNRC-----------------LPCFGLFRSWSPN 201 (201)
Q Consensus 170 ~l~~~~~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~ 201 (201)
.+|.+|++.|+..++.+.- -.-...|+-|++|
T Consensus 7 ~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN 55 (58)
T TIGR01565 7 KFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHN 55 (58)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeeccc
Confidence 5889999999988887641 1223567789887
No 88
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=32.67 E-value=50 Score=24.20 Aligned_cols=55 Identities=22% Similarity=0.394 Sum_probs=32.0
Q ss_pred CCCcEEEeCCCCcEEEEeeCC----ccCCCCEEEEcCCCccCCCCC--CCCccEEEEEEEECCC
Q 028960 112 EGYPVRLTTLDGRSLNIPIDN----VIHPNYEETVPREGMPIQNEP--SKRGNLKIKFNIKFPP 169 (201)
Q Consensus 112 ~G~~~~i~~l~G~~~~i~vp~----~~~~g~~~~i~g~G~p~~~~~--~~~GDL~v~~~v~~P~ 169 (201)
-|..+.|.+.||+.+.-+||+ .++.|+.+. . |-|..++| |.+|-.=-++-..-|.
T Consensus 22 gg~~vtI~~~dG~~v~~~IP~GpeLiV~eG~~V~-~--dqpLT~nPNVGGFGQ~e~EIVLQ~p~ 82 (118)
T PF01333_consen 22 GGYEVTIETSDGETVVETIPAGPELIVSEGQSVK-A--DQPLTNNPNVGGFGQGETEIVLQNPN 82 (118)
T ss_dssp SEEEEEEETTTSEEEEEEEESSS-BS--TT-EET-T--T-BSB------EEEEEEEEEEE--SH
T ss_pred CCEEEEEECCCCCEEEEecCCCCeEEEcCCCEEe-c--CCcccCCCCcCccCcCceEEEeeccc
Confidence 345799999999988889997 445666653 2 33444444 5677777777666553
No 89
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=31.69 E-value=76 Score=23.11 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=18.2
Q ss_pred EEEeCCCCCCCCEEEEcccccc
Q 028960 50 TVDVKPGWKKGTRITFEEKGNV 71 (201)
Q Consensus 50 ~V~Ip~G~~~G~~i~l~g~G~~ 71 (201)
+..||.|+..|+.+.+.|.-..
T Consensus 2 ~~~lp~~l~~G~~i~i~G~~~~ 23 (128)
T smart00276 2 TLPIPGGLKPGQTLTVRGIVLP 23 (128)
T ss_pred cccCCCCCCCCCEEEEEEEECC
Confidence 4578999999999999987543
No 90
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=30.46 E-value=54 Score=22.12 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHhhc-CCCCcch
Q 028960 171 LTAEQKAGIKFLQLLN-RCLPCFG 193 (201)
Q Consensus 171 l~~~~~~~l~~~~~~~-~~~~~~~ 193 (201)
||++++..|+||.+.- .+||-|.
T Consensus 3 LSe~E~r~L~eiEr~L~~~DP~fa 26 (82)
T PF11239_consen 3 LSEHEQRRLEEIERQLRADDPRFA 26 (82)
T ss_pred CCHHHHHHHHHHHHHHHhcCcHHH
Confidence 8999999999998743 4666664
No 91
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.95 E-value=68 Score=27.26 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=33.1
Q ss_pred cEEEEeeCCccCCCCEEEEcCCCccCCCCCCCCccEEEEEEEECCCCCC
Q 028960 124 RSLNIPIDNVIHPNYEETVPREGMPIQNEPSKRGNLKIKFNIKFPPSLT 172 (201)
Q Consensus 124 ~~~~i~vp~~~~~g~~~~i~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~ 172 (201)
+.+.+.+|++..++.++++.+.|- .||+|.+.|.-...+.
T Consensus 233 k~i~i~~~~g~~~~~~l~~~~~~~---------~~l~v~~~v~~~~~~~ 272 (288)
T KOG0715|consen 233 KDIMIVLPAGVRSADTLRFAGHGN---------DDLFVRLIVAKSPSFR 272 (288)
T ss_pred eeEEeecCcccccccEEEEecCCc---------ceEEEEEEeccCcccc
Confidence 358889999999999999998753 2999999998766555
No 92
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.94 E-value=5.1 Score=34.69 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=61.9
Q ss_pred CCCCCCeEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCCCCCCCEEEEccccccCCCC--CCeeEE
Q 028960 4 PKKAPPIENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPGWKKGTRITFEEKGNVQQNV--KPADVV 81 (201)
Q Consensus 4 p~kg~di~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~--~~GDl~ 81 (201)
++++.++...+.+|++++..|...++.-. .+ ..+.+.--.+..++..+...++|++.... ..+.++
T Consensus 247 ~~k~~~~~~n~~~sl~~~~v~~~~e~~~~------d~------~~~~~~r~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 314 (336)
T KOG0713|consen 247 ERKGDDLYTNVTISLEAALVGFEMEILHL------DG------HYVEVSRKKITWPGARTRKKGEGMPLLKNRNEKGNLY 314 (336)
T ss_pred ecCccchhhHHHHHHHHHHHHHHHHhhcc------ch------hhhhhhhhhccccchhhhhhhccchhhhccchhccee
Confidence 56899999999999999999998877665 34 46677777888899999999999884433 678899
Q ss_pred EEEEecCCCceE
Q 028960 82 FIVDEKPHSVFT 93 (201)
Q Consensus 82 v~i~v~~~~~f~ 93 (201)
+++.+..+..+.
T Consensus 315 ~t~~~~~~~~~~ 326 (336)
T KOG0713|consen 315 VTFDVEFPKSSL 326 (336)
T ss_pred EEecccCccccc
Confidence 998887665443
No 93
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=27.94 E-value=1.2e+02 Score=21.18 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHH
Q 028960 159 LKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 159 L~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
..|++.|.+|..+++++.+.++.-
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a~ 26 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKAR 26 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHH
Confidence 468999999999999987776543
No 94
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=26.78 E-value=1.4e+02 Score=22.89 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=28.1
Q ss_pred CCCccEEEEEEEECCCCCCHHHHHHHHHHHh
Q 028960 154 SKRGNLKIKFNIKFPPSLTAEQKAGIKFLQL 184 (201)
Q Consensus 154 ~~~GDL~v~~~v~~P~~l~~~~~~~l~~~~~ 184 (201)
-.+|+-.+.|...-|..+++.|++.+.++..
T Consensus 107 i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~ 137 (147)
T COG5435 107 IERGDTVLIFTLTTPGEFTPSQKKAWEQVIQ 137 (147)
T ss_pred cccCCeEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999998755
No 95
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=25.40 E-value=1.4e+02 Score=20.81 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=19.8
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHH
Q 028960 159 LKIKFNIKFPPSLTAEQKAGIKFL 182 (201)
Q Consensus 159 L~v~~~v~~P~~l~~~~~~~l~~~ 182 (201)
..|++.|.+|..+++++.+.++.=
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a~ 25 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKAR 25 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHHH
Confidence 368999999999999988877643
No 96
>PF02963 EcoRI: Restriction endonuclease EcoRI; InterPro: IPR004221 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents restriction endonucleases EcoRI, which requires magnesium as a cofactor. EcoRI recognises the DNA sequence GAATTC and cleaves after G-1 [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1ERI_A 1CL8_A 1QRH_A 1QPS_A 1CKQ_A 1QC9_B 1QRI_A 2OXV_A.
Probab=24.07 E-value=32 Score=28.01 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=24.1
Q ss_pred cEEEeCCCCcEEEEeeCCccCC-CCEEEEcCCCccCCC
Q 028960 115 PVRLTTLDGRSLNIPIDNVIHP-NYEETVPREGMPIQN 151 (201)
Q Consensus 115 ~~~i~~l~G~~~~i~vp~~~~~-g~~~~i~g~G~p~~~ 151 (201)
+++|..+||+.+++....++-+ =+.++-.+.|||...
T Consensus 162 ~~~v~rpdgrvv~l~ynsg~lnrldrltaanygmpint 199 (257)
T PF02963_consen 162 TISVTRPDGRVVTLEYNSGMLNRLDRLTAANYGMPINT 199 (257)
T ss_dssp -EEEEETTSEEEEE-TT-TTT--GGGTGGGGTT--SSS
T ss_pred ceeeeCCCCcEEEEEeccchhhHHHHHhhhhcCCccch
Confidence 5889999999888887765442 256667899999865
No 97
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=23.56 E-value=1.4e+02 Score=20.57 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=22.9
Q ss_pred EEEEEEEECCC-CCCHHHHHHHHHHHhh
Q 028960 159 LKIKFNIKFPP-SLTAEQKAGIKFLQLL 185 (201)
Q Consensus 159 L~v~~~v~~P~-~l~~~~~~~l~~~~~~ 185 (201)
.+.-++|..|. .+|++|+.-++.+.+.
T Consensus 62 ~~~~iEvK~p~~~ls~~Q~~~~~~l~~~ 89 (100)
T PF08774_consen 62 IFLFIEVKGPGDRLSPNQKEWIDKLREA 89 (100)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHC
Confidence 57778888885 6999999999998875
No 98
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=23.48 E-value=41 Score=28.43 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=30.0
Q ss_pred CccEEEEEEEECCCCCCHHHHHHHHHHHhhcCC---------------CCcchhccccC
Q 028960 156 RGNLKIKFNIKFPPSLTAEQKAGIKFLQLLNRC---------------LPCFGLFRSWS 199 (201)
Q Consensus 156 ~GDL~v~~~v~~P~~l~~~~~~~l~~~~~~~~~---------------~~~~~~~~~~~ 199 (201)
+||- ...++.+|+++..+|...+.++.++... .++|.++|+=.
T Consensus 29 Yg~~-~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekR 86 (275)
T PF12683_consen 29 YGDV-MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKR 86 (275)
T ss_dssp HHHH-EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-
T ss_pred hCcc-eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcC
Confidence 5663 3346789999999999999999997742 37888887643
No 99
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=23.00 E-value=85 Score=25.00 Aligned_cols=19 Identities=53% Similarity=0.803 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHH
Q 028960 162 KFNIKFPPSLTAEQKAGIK 180 (201)
Q Consensus 162 ~~~v~~P~~l~~~~~~~l~ 180 (201)
.|.|.||..++.++|++|-
T Consensus 190 ~f~i~Fp~~l~~~~Kalll 208 (221)
T PF03803_consen 190 NFVIEFPPDLDVEQKALLL 208 (221)
T ss_pred eEEEEcCCCCCHHHHHHHH
Confidence 4678889999999999884
No 100
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=22.68 E-value=53 Score=19.70 Aligned_cols=17 Identities=24% Similarity=0.055 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHhhcC
Q 028960 171 LTAEQKAGIKFLQLLNR 187 (201)
Q Consensus 171 l~~~~~~~l~~~~~~~~ 187 (201)
+++++...|++..+.+.
T Consensus 7 ~~~~~~~~L~~~f~~~~ 23 (56)
T smart00389 7 FTPEQLEELEKEFQKNP 23 (56)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 67888888887777653
No 101
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=22.54 E-value=4.2e+02 Score=21.44 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=42.2
Q ss_pred eEEEEeeehHhHhcCcEEEEEEeEEEEccCCcEEEEeEEEEEEeCCC--CCCCCEEEEccccccCCCCCCeeEEEEEEec
Q 028960 10 IENRLPCTLEELYKGTTKKIKISREIVDINGNTIKVEEILTVDVKPG--WKKGTRITFEEKGNVQQNVKPADVVFIVDEK 87 (201)
Q Consensus 10 i~~~l~isL~e~~~G~~~~v~~~r~~~~g~G~~~~~~~~~~V~Ip~G--~~~G~~i~l~g~G~~~~~~~~GDl~v~i~v~ 87 (201)
..-++.|+..|.... ...+... .| ..+-+.+|.| +++|+.+..... .+|.|+..
T Consensus 21 ~~~~V~L~~ddr~Kr-R~R~~td------~G------~evgl~LpRg~~L~dGDvL~~ddg-----------~~IvV~aa 76 (206)
T PRK13263 21 RAPTLTLAFDARCKS-RLAATLD------TG------REVAVVLPRGTVLRDGDVLVAEDG-----------ALVRVAAA 76 (206)
T ss_pred eeeEEEECHHHhhcc-eEEEECC------CC------CEEEEECCCCCccCCCCEEEeCCC-----------CEEEEEeC
Confidence 344677777776554 2333333 56 6899999977 789998876542 25777877
Q ss_pred CCCceEEeCC
Q 028960 88 PHSVFTRDGN 97 (201)
Q Consensus 88 ~~~~f~r~g~ 97 (201)
+.+.+.....
T Consensus 77 pE~Vl~I~~~ 86 (206)
T PRK13263 77 PEAVLRVRAG 86 (206)
T ss_pred CCcEEEEECC
Confidence 7777666554
No 102
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=21.88 E-value=2.6e+02 Score=19.29 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=30.7
Q ss_pred eEEEEEEeCCCCCCCCEEEEccccccCCCCCCeeEEEEEEecCCCceEEeC-CceEEEEEeCHHHHhCCCcEEEeCCCCc
Q 028960 46 EEILTVDVKPGWKKGTRITFEEKGNVQQNVKPADVVFIVDEKPHSVFTRDG-NDLIVTRTITLGEALEGYPVRLTTLDGR 124 (201)
Q Consensus 46 ~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g-~dL~~~~~i~~~~al~G~~~~i~~l~G~ 124 (201)
.+.+.+.||.-+..|+.|-=-. .....|.--+.++.. ++.|+-.. .-+|+.-++.+..--..+.|......++
T Consensus 8 ~~~~~~~Vp~~l~~g~~lg~V~-----f~dC~~~~~~~~~ss-DpdF~V~~DGsVy~~r~v~l~~~~~~F~V~a~D~~~~ 81 (90)
T PF08758_consen 8 QKKYTFEVPSNLEAGQPLGKVN-----FEDCTGRRRVIFESS-DPDFRVLEDGSVYAKRPVQLSSEQRSFTVHAWDSQTQ 81 (90)
T ss_dssp S-EEEE----SS-SS--EEE--------B--SS---EEEE----SEEEEETTTEEEEES--S-SSS-EEEEEEEEETTTT
T ss_pred cceEEEEcCchhhCCcEEEEEE-----eccCCCCCceEEecC-CCCEEEcCCCeEEEeeeEecCCCceEEEEEEECCCCC
Confidence 4678999999999998763221 112223333444433 34788765 4777777777654434455555555555
Q ss_pred E
Q 028960 125 S 125 (201)
Q Consensus 125 ~ 125 (201)
.
T Consensus 82 ~ 82 (90)
T PF08758_consen 82 E 82 (90)
T ss_dssp E
T ss_pred e
Confidence 3
No 103
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=21.02 E-value=2.8e+02 Score=23.48 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=37.4
Q ss_pred eCCCCCCCCEEEEcc-ccccCCCCCCeeEEEEEEecCCCceEEe---------CCceEEEEEeCHHHHhCCC
Q 028960 53 VKPGWKKGTRITFEE-KGNVQQNVKPADVVFIVDEKPHSVFTRD---------GNDLIVTRTITLGEALEGY 114 (201)
Q Consensus 53 Ip~G~~~G~~i~l~g-~G~~~~~~~~GDl~v~i~v~~~~~f~r~---------g~dL~~~~~i~~~~al~G~ 114 (201)
-+.|.++|+.++|.. +|++..++ .-.+++++..+..|+.. ..-+...+++++..|..|+
T Consensus 185 ~~h~l~~gd~V~f~ev~gm~~lN~---~~~~~v~~~~~~~f~i~d~~~~~~y~~gG~~~qvK~~~~~~~~g~ 253 (286)
T cd01491 185 TRHGFEDGDYVTFSEVEGMTELNG---CEPRKIKVKGPYTFSIGDTSSFSEYIRGGIVTQVKLSPMAAFFGG 253 (286)
T ss_pred cccCCcCCCEEEEeccCcchhhCC---CccEEEEECCCCeEEECcCcCcCccccCcEEEEEecccHHHHhhh
Confidence 378999999999887 47765543 22356666655556542 1234555667777777765
No 104
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=20.84 E-value=1.9e+02 Score=16.77 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=19.2
Q ss_pred eCCceEEEEEeCHHHHhCCCcEEEeCCCCcEEEEe
Q 028960 95 DGNDLIVTRTITLGEALEGYPVRLTTLDGRSLNIP 129 (201)
Q Consensus 95 ~g~dL~~~~~i~~~~al~G~~~~i~~l~G~~~~i~ 129 (201)
+..+-|..-.|- ...|..+.|.+.+|+.++++
T Consensus 8 D~~egfv~g~I~---~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 8 DPKEGFVKGEII---EEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp ESSSSEEEEEEE---EEESSEEEEEETTTEEEEEE
T ss_pred CCcccEEEEEEE---EEcCCEEEEEECCCCEEEeC
Confidence 344444444333 44677888888888755554
No 105
>PRK12426 elongation factor P; Provisional
Probab=20.67 E-value=1.6e+02 Score=23.36 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCCCCEEEEccc
Q 028960 48 ILTVDVKPGWKKGTRITFEEK 68 (201)
Q Consensus 48 ~~~V~Ip~G~~~G~~i~l~g~ 68 (201)
-++|.||.-+..|+.|++.-.
T Consensus 157 G~~V~VP~FI~~Gd~IkVdT~ 177 (185)
T PRK12426 157 GVEVLVPPFVEIGDVIKVDTR 177 (185)
T ss_pred CCEEEeCCcccCCCEEEEECC
Confidence 378999999999999988654
Done!