Query 028961
Match_columns 201
No_of_seqs 183 out of 1537
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:12:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 9.8E-40 3.4E-44 220.8 4.1 74 2-76 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 3.8E-39 1.3E-43 223.0 4.2 76 2-78 1-76 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.6E-37 5.4E-42 218.4 2.9 71 1-72 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 2.1E-37 7.1E-42 215.2 1.7 70 1-71 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 8.8E-37 3E-41 216.0 1.9 69 1-70 9-77 (103)
6 2jee_A YIIU; FTSZ, septum, coi 87.2 4.8 0.00016 26.6 9.3 43 119-166 3-45 (81)
7 2w6a_A ARF GTPase-activating p 84.7 5.1 0.00017 24.7 8.7 53 117-169 8-62 (63)
8 1dip_A Delta-sleep-inducing pe 82.4 2.3 8E-05 27.4 4.5 29 144-172 18-46 (78)
9 3s9g_A Protein hexim1; cyclin 81.4 6.7 0.00023 26.7 6.7 57 115-172 26-89 (104)
10 2oqq_A Transcription factor HY 80.6 6 0.00021 22.6 5.5 27 146-172 15-41 (42)
11 3nmd_A CGMP dependent protein 76.5 13 0.00043 23.9 8.2 54 116-176 15-68 (72)
12 1dh3_A Transcription factor CR 75.9 11 0.00036 22.8 6.3 35 137-175 15-49 (55)
13 1j1d_C Troponin I, TNI; THIN f 75.8 20 0.00067 25.9 9.6 33 114-146 53-85 (133)
14 2dgc_A Protein (GCN4); basic d 75.1 12 0.0004 23.3 6.1 37 135-175 21-57 (63)
15 2yy0_A C-MYC-binding protein; 74.7 6.9 0.00024 23.6 4.8 30 144-173 22-51 (53)
16 1ytz_T Troponin T; muscle, THI 73.7 9.4 0.00032 26.5 5.9 53 114-174 37-89 (107)
17 3hnw_A Uncharacterized protein 73.3 23 0.0008 25.5 8.6 71 89-173 65-135 (138)
18 1gd2_E Transcription factor PA 73.0 12 0.00043 23.8 6.0 42 133-174 18-62 (70)
19 1j1e_C Troponin I, TNI; THIN f 70.1 33 0.0011 26.0 8.7 46 115-160 54-105 (180)
20 2dfs_A Myosin-5A; myosin-V, in 70.0 43 0.0015 32.4 11.5 26 150-175 1018-1043(1080)
21 1a93_B MAX protein, coiled coi 69.0 10 0.00034 20.7 4.0 26 140-165 6-31 (34)
22 2ky6_A Mediator of RNA polymer 65.0 6.3 0.00021 29.5 3.6 38 36-73 116-160 (166)
23 1j1d_B Troponin T, TNT; THIN f 62.8 35 0.0012 23.5 7.0 32 115-146 38-69 (106)
24 2wt7_A Proto-oncogene protein 62.7 24 0.00083 21.7 6.1 34 137-174 16-49 (63)
25 1p9i_A Cortexillin I/GCN4 hybr 62.5 9.4 0.00032 19.6 2.9 18 157-174 8-25 (31)
26 2l16_A SEC-independent protein 61.9 0.4 1.4E-05 31.6 -3.0 31 43-76 16-46 (78)
27 2oxj_A Hybrid alpha/beta pepti 61.7 12 0.00042 20.2 3.5 24 150-173 3-26 (34)
28 1t2k_D Cyclic-AMP-dependent tr 61.2 25 0.00086 21.4 6.1 34 137-174 15-48 (61)
29 3thf_A Protein shroom; coiled- 60.8 1.6 5.5E-05 33.5 -0.2 57 136-196 11-74 (190)
30 1gk7_A Vimentin; intermediate 59.6 21 0.00071 20.0 5.0 29 144-172 9-37 (39)
31 3hnw_A Uncharacterized protein 57.4 51 0.0017 23.7 11.1 54 123-176 76-131 (138)
32 1jnm_A Proto-oncogene C-JUN; B 57.2 30 0.001 21.1 6.1 36 136-175 14-49 (62)
33 3gp4_A Transcriptional regulat 55.5 52 0.0018 23.5 7.3 55 118-173 59-113 (142)
34 3m48_A General control protein 54.0 16 0.00056 19.6 3.1 23 151-173 3-25 (33)
35 2rpa_A Katanin P60 ATPase-cont 53.0 5.7 0.00019 26.0 1.5 56 29-103 16-71 (78)
36 1ci6_A Transcription factor AT 52.3 38 0.0013 20.8 6.3 25 149-173 24-48 (63)
37 2jee_A YIIU; FTSZ, septum, coi 51.3 49 0.0017 21.7 5.8 27 145-171 17-43 (81)
38 3gpv_A Transcriptional regulat 51.1 62 0.0021 23.2 7.1 59 118-177 73-131 (148)
39 1kd8_B GABH BLL, GCN4 acid bas 50.2 24 0.00083 19.3 3.5 11 160-170 20-30 (36)
40 3c3f_A Alpha/beta peptide with 48.7 27 0.00093 18.8 3.5 22 151-172 4-25 (34)
41 3oja_B Anopheles plasmodium-re 48.1 1.4E+02 0.0048 26.0 11.6 30 146-175 549-578 (597)
42 2l5g_A GPS2 protein, G protein 47.5 31 0.0011 19.0 3.7 20 148-167 15-34 (38)
43 1ci6_A Transcription factor AT 47.0 48 0.0016 20.3 5.8 31 143-173 32-62 (63)
44 1t6f_A Geminin; coiled-coil, c 45.9 36 0.0012 18.6 4.5 26 143-168 9-34 (37)
45 1g6u_A Domain swapped dimer; d 45.8 39 0.0013 19.0 4.8 22 117-138 15-36 (48)
46 1nkp_B MAX protein, MYC proto- 45.5 42 0.0014 21.6 4.9 30 146-175 52-81 (83)
47 3a7p_A Autophagy protein 16; c 45.1 89 0.003 22.9 9.0 22 149-170 111-132 (152)
48 1am9_A Srebp-1A, protein (ster 44.0 41 0.0014 21.8 4.7 29 148-176 50-78 (82)
49 1m2d_A [2Fe-2S] ferredoxin; th 43.5 13 0.00044 25.4 2.2 33 39-72 59-91 (110)
50 3hvz_A Uncharacterized protein 42.9 18 0.00063 23.3 2.8 27 44-70 7-33 (78)
51 1deb_A APC protein, adenomatou 42.7 43 0.0015 19.8 4.0 23 152-174 7-29 (54)
52 1uii_A Geminin; human, DNA rep 41.7 65 0.0022 21.1 5.2 31 143-173 48-78 (83)
53 2bni_A General control protein 41.6 37 0.0013 18.3 3.3 19 153-171 6-24 (34)
54 1go4_E MAD1 (mitotic arrest de 41.6 44 0.0015 22.8 4.6 26 148-173 19-44 (100)
55 2zhg_A Redox-sensitive transcr 41.3 43 0.0015 24.3 4.9 55 118-172 67-121 (154)
56 2l5g_B Putative uncharacterize 41.0 49 0.0017 18.8 5.2 37 119-163 2-38 (42)
57 3na7_A HP0958; flagellar bioge 40.9 1.3E+02 0.0044 23.6 8.6 26 120-145 88-113 (256)
58 1t2k_D Cyclic-AMP-dependent tr 40.8 59 0.002 19.6 5.5 29 143-171 31-59 (61)
59 4gfh_A DNA topoisomerase 2; to 40.1 57 0.0019 31.9 6.8 44 26-74 958-1001(1177)
60 2zxx_A Geminin; coiled-coil, c 39.8 46 0.0016 21.7 4.2 31 143-173 36-66 (79)
61 2hy6_A General control protein 36.8 49 0.0017 17.8 3.3 21 152-172 5-25 (34)
62 2oa5_A Hypothetical protein BQ 36.3 1.1E+02 0.0036 21.2 7.7 57 86-142 9-67 (110)
63 2w6b_A RHO guanine nucleotide 35.4 73 0.0025 19.1 4.4 25 150-174 12-36 (56)
64 1nkp_A C-MYC, MYC proto-oncoge 35.3 90 0.0031 20.4 5.3 25 151-175 62-86 (88)
65 3m9b_A Proteasome-associated A 34.8 71 0.0024 25.5 5.5 43 122-169 54-96 (251)
66 2xus_A Breast cancer metastasi 34.5 72 0.0024 18.8 5.7 34 121-161 12-45 (49)
67 3q4f_C DNA repair protein XRCC 34.0 48 0.0017 25.1 4.1 23 148-170 161-183 (186)
68 4dnd_A Syntaxin-10, SYN10; str 33.8 1.1E+02 0.0037 21.7 5.9 83 62-145 42-128 (130)
69 1wlq_A Geminin; coiled-coil; 2 33.7 81 0.0028 20.7 4.7 29 144-172 41-69 (83)
70 2oa5_A Hypothetical protein BQ 32.2 30 0.001 24.0 2.5 25 150-174 10-34 (110)
71 1q08_A Zn(II)-responsive regul 31.4 1.1E+02 0.0037 19.8 7.6 57 118-175 16-73 (99)
72 2ygg_A Sodium/hydrogen exchang 29.9 75 0.0026 20.1 3.9 24 118-141 3-26 (70)
73 1uo4_A General control protein 29.5 71 0.0024 17.2 3.3 21 152-172 5-25 (34)
74 1go4_E MAD1 (mitotic arrest de 29.3 1.3E+02 0.0045 20.4 5.4 31 147-177 11-41 (100)
75 3c3g_A Alpha/beta peptide with 28.2 74 0.0025 17.0 4.1 19 153-171 5-23 (33)
76 2wvr_A Geminin; DNA replicatio 26.6 1.2E+02 0.004 23.4 5.2 31 143-173 117-147 (209)
77 3oja_A Leucine-rich immune mol 26.5 2.9E+02 0.01 23.3 12.2 24 150-173 437-460 (487)
78 2kmm_A Guanosine-3',5'-BIS(dip 26.3 55 0.0019 19.9 2.9 26 45-70 3-28 (73)
79 3s4r_A Vimentin; alpha-helix, 25.7 1.5E+02 0.0051 19.6 8.4 30 144-173 52-81 (93)
80 3nzj_F Proteasome component C1 25.4 11 0.00037 30.7 -0.9 21 37-57 4-24 (288)
81 4div_A ORF48; distal tail prot 25.3 2.7E+02 0.0094 22.6 8.1 24 178-201 217-240 (299)
82 2lw9_A Unconventionnal myosin- 25.2 60 0.002 19.0 2.6 35 92-127 6-40 (51)
83 3h4p_A Proteasome subunit alph 25.1 15 0.00051 29.4 -0.1 19 40-58 11-31 (264)
84 1q06_A Transcriptional regulat 25.0 1.4E+02 0.0049 20.8 5.3 55 118-173 57-111 (135)
85 2aze_A Transcription factor DP 24.9 2.1E+02 0.0071 21.0 7.6 49 119-169 2-50 (155)
86 3w03_C DNA repair protein XRCC 24.8 1.1E+02 0.0037 23.2 4.7 26 147-172 151-176 (184)
87 1zbd_B Rabphilin-3A; G protein 24.8 1.5E+02 0.005 21.1 5.3 19 114-132 5-23 (134)
88 1nlw_A MAD protein, MAX dimeri 24.7 1.2E+02 0.0041 19.4 4.4 21 152-172 58-78 (80)
89 2zjr_V 50S ribosomal protein L 23.5 1.3E+02 0.0046 18.5 4.3 29 114-142 4-32 (67)
90 1ytz_I Troponin I; muscle, THI 23.1 2.4E+02 0.0083 21.2 8.3 32 114-146 51-82 (182)
91 3he5_A Synzip1; heterodimeric 22.6 1.1E+02 0.0038 17.1 3.6 15 158-172 34-48 (49)
92 1r8e_A Multidrug-efflux transp 22.3 2.1E+02 0.0071 22.1 6.3 45 118-162 63-107 (278)
93 1hjb_A Ccaat/enhancer binding 22.3 1.7E+02 0.0059 19.2 5.6 20 154-173 42-61 (87)
94 1ryp_E 20S proteasome; multica 21.7 15 0.00051 28.7 -0.7 13 44-56 3-15 (242)
95 2zvv_Y Cyclin-dependent kinase 21.5 13 0.00045 18.5 -0.6 11 15-25 15-25 (26)
96 1ryp_D 20S proteasome; multica 21.5 17 0.00058 28.3 -0.4 15 42-56 3-17 (241)
97 3swk_A Vimentin; cytoskeleton, 21.4 1.8E+02 0.006 18.9 5.4 78 89-168 4-83 (86)
98 2jo8_A Serine/threonine-protei 20.5 82 0.0028 18.7 2.6 18 116-133 7-24 (51)
99 2v4h_A NF-kappa-B essential mo 20.4 2.2E+02 0.0075 19.6 8.3 43 122-164 62-106 (110)
100 3nrf_A APAG protein; structura 20.4 9.7 0.00033 26.3 -1.7 42 12-58 22-63 (106)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=9.8e-40 Score=220.78 Aligned_cols=74 Identities=42% Similarity=0.716 Sum_probs=69.4
Q ss_pred CccccceeeecCCCCcchhhhhhhchHHHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHHHhhccC
Q 028961 2 ARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKYLKSTQG 76 (201)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY~~~~~~ 76 (201)
||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|+ +++|+.||+||+..+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~-s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-STDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEE-SSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCC-CCCHHHHHHHHHhccCC
Confidence 899999999999999999999999999999999999999999999999999999999 57899999999987653
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=3.8e-39 Score=223.04 Aligned_cols=76 Identities=41% Similarity=0.704 Sum_probs=72.5
Q ss_pred CccccceeeecCCCCcchhhhhhhchHHHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHHHhhccCCC
Q 028961 2 ARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKYLKSTQGAQ 78 (201)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY~~~~~~~~ 78 (201)
||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+|+| ++|..||+||+..++...
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHCCSCCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcCcccc
Confidence 8999999999999999999999999999999999999999999999999999999995 899999999999877543
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.6e-37 Score=218.44 Aligned_cols=71 Identities=34% Similarity=0.549 Sum_probs=68.8
Q ss_pred CCccccceeeecCCCCcchhhhhhhchHHHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHHHh
Q 028961 1 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKYLK 72 (201)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY~~ 72 (201)
|||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|+ +|++..|+++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~-sps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-TPKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEE-CTTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceec-CCCHHHHHHHhhC
Confidence 8999999999999999999999999999999999999999999999999999999999 5799999999964
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=2.1e-37 Score=215.18 Aligned_cols=70 Identities=36% Similarity=0.541 Sum_probs=67.8
Q ss_pred CCccccceeeecCCCCcchhhhhhhchHHHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHHH
Q 028961 1 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKYL 71 (201)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY~ 71 (201)
|||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|+ +|+|..||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~-s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEE-CGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEec-CCCHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999 589999999774
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=8.8e-37 Score=216.00 Aligned_cols=69 Identities=36% Similarity=0.555 Sum_probs=66.9
Q ss_pred CCccccceeeecCCCCcchhhhhhhchHHHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHH
Q 028961 1 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKY 70 (201)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY 70 (201)
|||+||+|++|+|.++|+|||+|||+||||||+||||||||+||||||||+|++|+|+ +++|..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~-s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEE-CGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeec-CccHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999 67999999873
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.17 E-value=4.8 Score=26.58 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 119 MTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKY 166 (201)
Q Consensus 119 Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~ 166 (201)
+|++=|.+||..+..++..| .++..+|+.|+.+-..|.++|..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999776 46666777777776665555544
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=84.73 E-value=5.1 Score=24.68 Aligned_cols=53 Identities=26% Similarity=0.276 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 117 GTMTLDELLVLEKHLELWIYNIRS--TKMDIMFQEINLLRNKEGILTAANKYLQD 169 (201)
Q Consensus 117 ~~Ls~~EL~~LE~~Le~~l~~IR~--RK~~ll~~~i~~l~~k~~~l~eeN~~L~~ 169 (201)
+..++.|.-++...|..+=.+|.. +-+.-+++++..++++.+.|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 457899988888888766655542 23445678888899999999999999874
No 8
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=82.38 E-value=2.3 Score=27.43 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 144 DIMFQEINLLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~eeN~~L~~~~~ 172 (201)
+.+.++|..|..+...|+.||..|+.-..
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56778999999999999999999987654
No 9
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=81.40 E-value=6.7 Score=26.75 Aligned_cols=57 Identities=21% Similarity=0.105 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 115 GTGTMTLDELLVLEKHLELWIYNI-------RSTKMDIMFQEINLLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 115 ~L~~Ls~~EL~~LE~~Le~~l~~I-------R~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~ 172 (201)
.|.++|-.||.+=--.|+..+.++ |.. ..-...+|..|..+...|..||..|...-+
T Consensus 26 rL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~-~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 26 SLQNMSKQELIKEYLELEKSLSRMEDENNRLRLE-SKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666554444444444333 211 111235778888888888888888887644
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=80.59 E-value=6 Score=22.56 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 146 MFQEINLLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 146 l~~~i~~l~~k~~~l~eeN~~L~~~~~ 172 (201)
+......|..+...|+.||..|++.+.
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 455667888889999999999998653
No 11
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.46 E-value=13 Score=23.95 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028961 116 TGTMTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEENNG 176 (201)
Q Consensus 116 L~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~~~~ 176 (201)
+++++. +.+|+..|......||.+-. .|..|.+......++...|+.++....+
T Consensus 15 ~~~mgt--i~eLq~~L~~K~eELr~kd~-----~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 15 IEGRGS--LRDLQYALQEKIEELRQRDA-----LIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCc--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444 88888889888888886543 3567777777778888889988887655
No 12
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=75.93 E-value=11 Score=22.83 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028961 137 NIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEENN 175 (201)
Q Consensus 137 ~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~~~ 175 (201)
.-|.||. ..++.|..+...|..||..|..++....
T Consensus 15 rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 15 ESRRKKK----EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455564 4557888899999999999999987654
No 13
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=75.83 E-value=20 Score=25.87 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=28.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 114 GGTGTMTLDELLVLEKHLELWIYNIRSTKMDIM 146 (201)
Q Consensus 114 e~L~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll 146 (201)
-+++++|.++|+++-..|...+..+-+-|..+-
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 369999999999999999999999888876553
No 14
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=75.09 E-value=12 Score=23.32 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028961 135 IYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEENN 175 (201)
Q Consensus 135 l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~~~ 175 (201)
-.+-|.||. ++++.|..+...|..+|..|...+....
T Consensus 21 ArrsR~RK~----~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 21 ARRSRARKL----QRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556664 4567888888999999999998877543
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.69 E-value=6.9 Score=23.57 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 144 DIMFQEINLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
+.+..+...|+.|...|.+++..|+.++.+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566778888888888888888888764
No 16
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=73.66 E-value=9.4 Score=26.52 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028961 114 GGTGTMTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEEN 174 (201)
Q Consensus 114 e~L~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~~ 174 (201)
-++++||.++|+++-..|...+..+-+-|-.+- .+...-.-|-..|..++.+.
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE--------~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA--------EQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH--------HHHHhhhhHHHHHHHHHHHh
Confidence 368999999999999999999999888776543 23333334445566666665
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.30 E-value=23 Score=25.55 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=34.9
Q ss_pred hHHHHHHHhHHHHHHHHhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 89 DAKDEINMLKQEIEILQKGLRYMFGGGTGTMTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQ 168 (201)
Q Consensus 89 ~l~~e~~kL~~ei~~l~~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~ 168 (201)
.+-.++.+++.+.+.|+..+..+ -+|+..|...|...-- |.+-+..+++.|+++...|+.++..|.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~-----k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQI-----KAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666655555443322 3444444444443322 222233445555555666666666665
Q ss_pred HHHHh
Q 028961 169 DKMEE 173 (201)
Q Consensus 169 ~~~~~ 173 (201)
..+..
T Consensus 131 ~~~~~ 135 (138)
T 3hnw_A 131 TELND 135 (138)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 18
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=73.04 E-value=12 Score=23.80 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028961 133 LWIYNIRSTKMDIMF---QEINLLRNKEGILTAANKYLQDKMEEN 174 (201)
Q Consensus 133 ~~l~~IR~RK~~ll~---~~i~~l~~k~~~l~eeN~~L~~~~~~~ 174 (201)
.+-...|.||.+-+. .++..|......+..||..|+.++...
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777765543 355555555555667777777766543
No 19
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=70.12 E-value=33 Score=26.00 Aligned_cols=46 Identities=24% Similarity=0.212 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 028961 115 GTGTMTLDELLVLEKHLELWIYNIRSTKMDIMFQ------EINLLRNKEGIL 160 (201)
Q Consensus 115 ~L~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~------~i~~l~~k~~~l 160 (201)
+|++||.++|+++-..|...+..+-+-|..+-.. +|+.|..++..|
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 6899999999999999999999998888665432 466666555555
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=70.03 E-value=43 Score=32.40 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028961 150 INLLRNKEGILTAANKYLQDKMEENN 175 (201)
Q Consensus 150 i~~l~~k~~~l~eeN~~L~~~~~~~~ 175 (201)
-+.|+.+...|.+||..|+.++++..
T Consensus 1018 ~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1018 KHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999988755
No 21
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=68.98 E-value=10 Score=20.69 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 140 STKMDIMFQEINLLRNKEGILTAANK 165 (201)
Q Consensus 140 ~RK~~ll~~~i~~l~~k~~~l~eeN~ 165 (201)
.||...-++.|+.|+++...|.++-.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 37888888888888877666665543
No 22
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=64.99 E-value=6.3 Score=29.48 Aligned_cols=38 Identities=16% Similarity=0.363 Sum_probs=29.0
Q ss_pred hhccCCceEEEEeecCCcccc-ccccc------chHHHHHHHHhh
Q 028961 36 SILCDADVGVFIFSNHGKLYE-LATNG------TMQGLIEKYLKS 73 (201)
Q Consensus 36 svLCda~valivfs~~gk~~~-~~s~~------~~~~VleRY~~~ 73 (201)
+.-|++.|-+++|||+-+.|- |-++. .++.||..|+..
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~ 160 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQV 160 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 456999999999999988775 65332 677788777653
No 23
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=62.81 E-value=35 Score=23.55 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 115 GTGTMTLDELLVLEKHLELWIYNIRSTKMDIM 146 (201)
Q Consensus 115 ~L~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll 146 (201)
++++||.++|+++-..|...+..+-+-|-.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 68999999999999999999999888876554
No 24
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=62.67 E-value=24 Score=21.69 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028961 137 NIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEEN 174 (201)
Q Consensus 137 ~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~~ 174 (201)
+-|.||. +.++.|+.+...|..+|..|...+...
T Consensus 16 rcR~rKk----~~~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 16 KCRNRRR----ELTDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345554 345788888888888888888887653
No 25
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=62.53 E-value=9.4 Score=19.59 Aligned_cols=18 Identities=44% Similarity=0.403 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 028961 157 EGILTAANKYLQDKMEEN 174 (201)
Q Consensus 157 ~~~l~eeN~~L~~~~~~~ 174 (201)
...|..||.+|..++++.
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456888888888888763
No 26
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=61.87 E-value=0.4 Score=31.63 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=25.1
Q ss_pred eEEEEeecCCcccccccccchHHHHHHHHhhccC
Q 028961 43 VGVFIFSNHGKLYELATNGTMQGLIEKYLKSTQG 76 (201)
Q Consensus 43 valivfs~~gk~~~~~s~~~~~~VleRY~~~~~~ 76 (201)
||+|||+| +|+++.+ .++...+..|++...+
T Consensus 16 VaLlvfGp-kkLP~l~--r~lGk~ir~fK~~~~~ 46 (78)
T 2l16_A 16 IALIIFGP-SKLPEIG--RAAGRTLLEFKSATKS 46 (78)
T ss_dssp HHHHHSCT-TTHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHH--HHHHHHHHHHHHHHHH
Confidence 78999998 5999887 5788888888876554
No 27
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=61.66 E-value=12 Score=20.19 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 150 INLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 150 i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
+++|..|...|..+|..|...+..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344555555555556555555543
No 28
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=61.23 E-value=25 Score=21.39 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028961 137 NIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEEN 174 (201)
Q Consensus 137 ~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~~ 174 (201)
+-|.||.+ .++.|..+...|..+|..|...+...
T Consensus 15 k~R~rKk~----~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 15 RSRQKRKV----WVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555543 44677777777888887777776643
No 29
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=60.83 E-value=1.6 Score=33.49 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cCCCCCCCCCccccccccc
Q 028961 136 YNIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEENNGI-------ANFGPITTNNIECPFAIPN 196 (201)
Q Consensus 136 ~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 196 (201)
+.|.++|.+|+ +.|++|...|++|...|...+..+... -...|.+.+++.+-.|||+
T Consensus 11 ~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigD 74 (190)
T 3thf_A 11 NLIKQKMDELI----KHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDA 74 (190)
T ss_dssp CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45778888877 678888888888888888777765543 2233445555555566553
No 30
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=59.65 E-value=21 Score=19.97 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 144 DIMFQEINLLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~eeN~~L~~~~~ 172 (201)
+-+.+..-.+-.|++.|..+|..|..++.
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666789999999999998875
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=57.37 E-value=51 Score=23.71 Aligned_cols=54 Identities=11% Similarity=-0.036 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028961 123 ELLVLEKHLELWIYNIRSTKMDIMFQ--EINLLRNKEGILTAANKYLQDKMEENNG 176 (201)
Q Consensus 123 EL~~LE~~Le~~l~~IR~RK~~ll~~--~i~~l~~k~~~l~eeN~~L~~~~~~~~~ 176 (201)
+...|+..++..-..+-.=|.++..- +++.+.++...|.+++..|..++....+
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666667777777777764 5566677777788888888887766543
No 32
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=57.16 E-value=30 Score=21.09 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028961 136 YNIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEENN 175 (201)
Q Consensus 136 ~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~~~ 175 (201)
.+-|.||.+ .++.|..+...|..+|..|...+....
T Consensus 14 ~k~R~rKk~----~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 14 SKSRKRKLE----RIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555543 457888888888888888888877543
No 33
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=55.48 E-value=52 Score=23.52 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 118 TMTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
++|++|+..+-...+.+-..+.. -.+++.++++.+.++...|...-..|..++..
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~-~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~ 113 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEA-RAELLKKQRIELKNRIDVMQEALDRLDFKIDN 113 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888776654332212222 23455666666666666666666666666553
No 34
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=54.04 E-value=16 Score=19.62 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028961 151 NLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 151 ~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
++|..|...|..+|..|...+..
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~R 25 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVAR 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHH
Confidence 34555666666666666666554
No 35
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=53.05 E-value=5.7 Score=26.00 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=36.8
Q ss_pred HHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHHHhhccCCCCCCcccCCchhHHHHHHHhHHHHHH
Q 028961 29 LKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKYLKSTQGAQAEPVMQTQPLDAKDEINMLKQEIEI 103 (201)
Q Consensus 29 ~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY~~~~~~~~~~~~~~~~~~~l~~e~~kL~~ei~~ 103 (201)
+|+|+|.+.+++=|.|++.|. .+-.-|+||.....+.. ....|+.-...+..|.+.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~------------g~~~qI~k~l~~~~d~~-------~r~kW~~~~~ei~~E~~~ 71 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ------------GVLDQMNKYLYSVKDTH-------LRQKWQQVWQEINVEAKQ 71 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH------------HHHHHHHHHHHTCSCHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHH------------HHHHHHHHHHHhcCCHH-------HHHhHHHHHHHHHHHHHH
Confidence 689999999999887777665 56777888887665321 223455544444444443
No 36
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.34 E-value=38 Score=20.80 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 149 EINLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 149 ~i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
.++.|..+...|..+|..|..++..
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~ 48 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADS 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777777666654
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=51.28 E-value=49 Score=21.67 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 145 IMFQEINLLRNKEGILTAANKYLQDKM 171 (201)
Q Consensus 145 ll~~~i~~l~~k~~~l~eeN~~L~~~~ 171 (201)
-..+.|..|+.....|.++|..|....
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 38
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=51.08 E-value=62 Score=23.20 Aligned_cols=59 Identities=12% Similarity=-0.015 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 028961 118 TMTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEENNGI 177 (201)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~~~~~ 177 (201)
++|++|+..+-...+..-..+. .-.+++.+++..+.++...|.+.-..|..++......
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTIL-HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHhhhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899998887764432211222 2235677788888888888888888888887765554
No 39
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=50.20 E-value=24 Score=19.27 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 028961 160 LTAANKYLQDK 170 (201)
Q Consensus 160 l~eeN~~L~~~ 170 (201)
|..|=..|+..
T Consensus 20 Le~eV~RLk~l 30 (36)
T 1kd8_B 20 LKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 40
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=48.73 E-value=27 Score=18.80 Aligned_cols=22 Identities=5% Similarity=-0.050 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028961 151 NLLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 151 ~~l~~k~~~l~eeN~~L~~~~~ 172 (201)
++|..|...|..+|..|...+.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHH
Confidence 3444444444455555544443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.06 E-value=1.4e+02 Score=26.02 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028961 146 MFQEINLLRNKEGILTAANKYLQDKMEENN 175 (201)
Q Consensus 146 l~~~i~~l~~k~~~l~eeN~~L~~~~~~~~ 175 (201)
+..+++..+++...+.+|+..+..++.+..
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666777777766666543
No 42
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.46 E-value=31 Score=19.04 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028961 148 QEINLLRNKEGILTAANKYL 167 (201)
Q Consensus 148 ~~i~~l~~k~~~l~eeN~~L 167 (201)
+||..|+.+...|.+|.-.|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 43
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.96 E-value=48 Score=20.35 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 143 MDIMFQEINLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 143 ~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
.+-+.++...|+.+...|..|+..|+.-|.+
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555666777777788888888776654
No 44
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=45.87 E-value=36 Score=18.61 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 143 MDIMFQEINLLRNKEGILTAANKYLQ 168 (201)
Q Consensus 143 ~~ll~~~i~~l~~k~~~l~eeN~~L~ 168 (201)
++.+...|+.-......|.+||..|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455666666667778888888775
No 45
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.83 E-value=39 Score=18.96 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 028961 117 GTMTLDELLVLEKHLELWIYNI 138 (201)
Q Consensus 117 ~~Ls~~EL~~LE~~Le~~l~~I 138 (201)
+++|.+||..||..|...-.++
T Consensus 15 egfspeelaaleselqalekkl 36 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4689999999998776544333
No 46
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=45.54 E-value=42 Score=21.59 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028961 146 MFQEINLLRNKEGILTAANKYLQDKMEENN 175 (201)
Q Consensus 146 l~~~i~~l~~k~~~l~eeN~~L~~~~~~~~ 175 (201)
+.+++..|+.+...|..+|..|..++....
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666677778888888888876543
No 47
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=45.10 E-value=89 Score=22.92 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028961 149 EINLLRNKEGILTAANKYLQDK 170 (201)
Q Consensus 149 ~i~~l~~k~~~l~eeN~~L~~~ 170 (201)
+...+..+.+.|++||..|-.+
T Consensus 111 q~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 111 ENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567888999999666555
No 48
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=43.99 E-value=41 Score=21.75 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028961 148 QEINLLRNKEGILTAANKYLQDKMEENNG 176 (201)
Q Consensus 148 ~~i~~l~~k~~~l~eeN~~L~~~~~~~~~ 176 (201)
+-|..|+.....|.++|..|+..+.+...
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~ 78 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSKS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567788888999999999998887643
No 49
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=43.55 E-value=13 Score=25.44 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=22.8
Q ss_pred cCCceEEEEeecCCcccccccccchHHHHHHHHh
Q 028961 39 CDADVGVFIFSNHGKLYELATNGTMQGLIEKYLK 72 (201)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~~~~~~VleRY~~ 72 (201)
|+---.++|+ |+|.+|...+...+..||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 4333334555 88888876667799999999753
No 50
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=42.85 E-value=18 Score=23.33 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=21.7
Q ss_pred EEEEeecCCcccccccccchHHHHHHH
Q 028961 44 GVFIFSNHGKLYELATNGTMQGLIEKY 70 (201)
Q Consensus 44 alivfs~~gk~~~~~s~~~~~~VleRY 70 (201)
-+.||.|+|...+++...++.++....
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~I 33 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYAI 33 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHHh
Confidence 378999999999999777777776543
No 51
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=42.69 E-value=43 Score=19.82 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 028961 152 LLRNKEGILTAANKYLQDKMEEN 174 (201)
Q Consensus 152 ~l~~k~~~l~eeN~~L~~~~~~~ 174 (201)
+|-++...|..||..|+..+..+
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhh
Confidence 33445555666777777666543
No 52
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=41.67 E-value=65 Score=21.14 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 143 MDIMFQEINLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 143 ~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
++-+.++|+.|+.....|.++|..|+.-...
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777777765543
No 53
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=41.63 E-value=37 Score=18.34 Aligned_cols=19 Identities=5% Similarity=0.176 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028961 153 LRNKEGILTAANKYLQDKM 171 (201)
Q Consensus 153 l~~k~~~l~eeN~~L~~~~ 171 (201)
|..|...|..+|..|...+
T Consensus 6 LEdKvEeLl~~~~~L~~EV 24 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHH
Confidence 3334444444444444443
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.59 E-value=44 Score=22.79 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 148 QEINLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 148 ~~i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
.+|+.|......|.+++..|.-+++.
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555544
No 55
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=41.33 E-value=43 Score=24.32 Aligned_cols=55 Identities=13% Similarity=-0.127 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 118 TMTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~ 172 (201)
++|++|+..+-..+...-...-..-..++.+++..+.++...|..--..|...+.
T Consensus 67 G~sl~eI~~~l~~~~~~~~~~~~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~~~~ 121 (154)
T 2zhg_A 67 GIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIG 121 (154)
T ss_dssp TCCHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677776665543221100000011234445555666666666665566655553
No 56
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.98 E-value=49 Score=18.78 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 119 MTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAA 163 (201)
Q Consensus 119 Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~ee 163 (201)
+|-+||.+=-..++.-+..+ .++|..|++|.+.|.+.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kt--------e~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMV--------EQQISKLKKKQQQLEEE 38 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Confidence 45566655445555444333 35677888888888765
No 57
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=40.87 E-value=1.3e+02 Score=23.56 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 120 TLDELLVLEKHLELWIYNIRSTKMDI 145 (201)
Q Consensus 120 s~~EL~~LE~~Le~~l~~IR~RK~~l 145 (201)
+..|+..|...++..-.++...-+++
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777765555554444333
No 58
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.79 E-value=59 Score=19.63 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 143 MDIMFQEINLLRNKEGILTAANKYLQDKM 171 (201)
Q Consensus 143 ~~ll~~~i~~l~~k~~~l~eeN~~L~~~~ 171 (201)
..-+..+...|+.+...|.+|+..|...+
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566777777788888888887765
No 59
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=40.12 E-value=57 Score=31.92 Aligned_cols=44 Identities=14% Similarity=0.347 Sum_probs=29.3
Q ss_pred chHHHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHHHhhc
Q 028961 26 AGLLKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKYLKST 74 (201)
Q Consensus 26 ~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY~~~~ 74 (201)
++|+|.- .|.+-.++ ..+++|.+.|++..|. ++++||+-|-.+.
T Consensus 958 ~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~---~l~eiL~~f~~~R 1001 (1177)
T 4gfh_A 958 IGFYERF-KLISPISL-MNMVAFDPHGKIKKYN---SVNEILSEFYYVR 1001 (1177)
T ss_dssp HCHHHHT-TCEEEECC-SCCEEECTTSCEEECS---SHHHHHHHHHHHH
T ss_pred HhHHHhc-cCcceecc-eEEEEEcCCCCccCcC---CHHHHHHHHHHHH
Confidence 4555543 34333332 1578899999998886 6899999887653
No 60
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=39.85 E-value=46 Score=21.69 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 143 MDIMFQEINLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 143 ~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
++-+..+|+.++.....|.+||..|..-..+
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677776677788888777665444
No 61
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=36.78 E-value=49 Score=17.82 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028961 152 LLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 152 ~l~~k~~~l~eeN~~L~~~~~ 172 (201)
+|..|...|..+|..|...+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~ 25 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 344444444444444444433
No 62
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=36.33 E-value=1.1e+02 Score=21.23 Aligned_cols=57 Identities=12% Similarity=0.048 Sum_probs=39.8
Q ss_pred CchhHHHHHHHhHHHHHHHHhhhhhh--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028961 86 QPLDAKDEINMLKQEIEILQKGLRYM--FGGGTGTMTLDELLVLEKHLELWIYNIRSTK 142 (201)
Q Consensus 86 ~~~~l~~e~~kL~~ei~~l~~~~r~~--~Ge~L~~Ls~~EL~~LE~~Le~~l~~IR~RK 142 (201)
..+.+..++.+|+-|+..|.+.++.- .+.+-..|+..+=+.+-.....+|...-.+|
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999988752 1123567999888877777776666655555
No 63
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=35.44 E-value=73 Score=19.14 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028961 150 INLLRNKEGILTAANKYLQDKMEEN 174 (201)
Q Consensus 150 i~~l~~k~~~l~eeN~~L~~~~~~~ 174 (201)
+=.|+.+...|..||..|.+-+++.
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeE 36 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEE 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666665543
No 64
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=35.27 E-value=90 Score=20.42 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 028961 151 NLLRNKEGILTAANKYLQDKMEENN 175 (201)
Q Consensus 151 ~~l~~k~~~l~eeN~~L~~~~~~~~ 175 (201)
..+......|..+|..|..++.+..
T Consensus 62 ~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 62 QKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444567788888888887654
No 65
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.77 E-value=71 Score=25.47 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 122 DELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQD 169 (201)
Q Consensus 122 ~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~ 169 (201)
+.+.+|+.+++..- .|++.+.+.+..++++...|.+|+..|+.
T Consensus 54 ~~l~eL~~ql~~L~-----arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSLA-----ARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHT-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566665554332 34555666777777777777777776653
No 66
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=34.53 E-value=72 Score=18.77 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 121 LDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILT 161 (201)
Q Consensus 121 ~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~ 161 (201)
+++|..||.+-- .-|++++.+++..+.++...+.
T Consensus 12 ld~l~~LEkqF~-------~LkEqlY~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 12 VSEMLDLEKQFS-------ELKEKLFRERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 566777774443 3468888888888887765553
No 67
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=33.96 E-value=48 Score=25.08 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028961 148 QEINLLRNKEGILTAANKYLQDK 170 (201)
Q Consensus 148 ~~i~~l~~k~~~l~eeN~~L~~~ 170 (201)
++|..|+.+...|++||.+|...
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888999999998754
No 68
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=33.76 E-value=1.1e+02 Score=21.66 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=46.1
Q ss_pred chHHHHHHHHhhccCCCCCC--cccCCchhHHHHHHHhHHHHHHHHhhhhhhcCCC--CCCCCHHHHHHHHHHHHHHHHH
Q 028961 62 TMQGLIEKYLKSTQGAQAEP--VMQTQPLDAKDEINMLKQEIEILQKGLRYMFGGG--TGTMTLDELLVLEKHLELWIYN 137 (201)
Q Consensus 62 ~~~~VleRY~~~~~~~~~~~--~~~~~~~~l~~e~~kL~~ei~~l~~~~r~~~Ge~--L~~Ls~~EL~~LE~~Le~~l~~ 137 (201)
.++.++.+|........... ........++..+..++..++.|+...+-....+ . +++..||..-...+...-..
T Consensus 42 ~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~Rr~fV~~~r~~ 120 (130)
T 4dnd_A 42 TARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDLQERKVFVERMREA 120 (130)
T ss_dssp HHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence 56666677765444321110 0001122456666777777888877765443221 2 47888888888877777777
Q ss_pred HHHHHHHH
Q 028961 138 IRSTKMDI 145 (201)
Q Consensus 138 IR~RK~~l 145 (201)
|..-|.++
T Consensus 121 I~~mk~~l 128 (130)
T 4dnd_A 121 VQEMKDHM 128 (130)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76666543
No 69
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.73 E-value=81 Score=20.67 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 144 DIMFQEINLLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~eeN~~L~~~~~ 172 (201)
+-+.+.|+.+......|.++|..|+.-..
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666667777777777765543
No 70
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=32.19 E-value=30 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028961 150 INLLRNKEGILTAANKYLQDKMEEN 174 (201)
Q Consensus 150 i~~l~~k~~~l~eeN~~L~~~~~~~ 174 (201)
+++|..+...|+=||..|++++...
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~~ 34 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKSS 34 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4667777888999999999999653
No 71
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=31.44 E-value=1.1e+02 Score=19.84 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028961 118 TMTLDELLVLEKHLELWIY-NIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEENN 175 (201)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~l~-~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~~~ 175 (201)
++|++|+..+-...+..-. .. ..-..++.+++..+.++...|..--..|...+....
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899998887754321100 01 122456777777777777777777777777776543
No 72
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=29.94 E-value=75 Score=20.13 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 028961 118 TMTLDELLVLEKHLELWIYNIRST 141 (201)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~l~~IR~R 141 (201)
.||.+++.++-+.|...|.+||.|
T Consensus 3 ~ls~~~~e~ir~IL~~NLykiRqr 26 (70)
T 2ygg_A 3 ALSKDKEEEIRKILRNNLQKTRQR 26 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999999965
No 73
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=29.52 E-value=71 Score=17.20 Aligned_cols=21 Identities=5% Similarity=0.134 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028961 152 LLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 152 ~l~~k~~~l~eeN~~L~~~~~ 172 (201)
+|..|...|..+|..|...+.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~ 25 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 344444445555555554443
No 74
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.32 E-value=1.3e+02 Score=20.37 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 028961 147 FQEINLLRNKEGILTAANKYLQDKMEENNGI 177 (201)
Q Consensus 147 ~~~i~~l~~k~~~l~eeN~~L~~~~~~~~~~ 177 (201)
.+++..|+++...|..||..|+..+......
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999887765
No 75
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=28.19 E-value=74 Score=16.98 Aligned_cols=19 Identities=5% Similarity=0.015 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028961 153 LRNKEGILTAANKYLQDKM 171 (201)
Q Consensus 153 l~~k~~~l~eeN~~L~~~~ 171 (201)
|..|...|..+|..|...+
T Consensus 5 LEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 3334444444444444443
No 76
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.60 E-value=1.2e+02 Score=23.38 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 143 MDIMFQEINLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 143 ~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
++-|.++|+.++.....|.+||..|+.-.+.
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666666666655443
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.45 E-value=2.9e+02 Score=23.31 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 150 INLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 150 i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
.+..+..+..+.+||..|++-+.+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhh
Confidence 344455566666666666666554
No 78
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=26.32 E-value=55 Score=19.91 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=21.3
Q ss_pred EEEeecCCcccccccccchHHHHHHH
Q 028961 45 VFIFSNHGKLYELATNGTMQGLIEKY 70 (201)
Q Consensus 45 livfs~~gk~~~~~s~~~~~~VleRY 70 (201)
+.|+-|+|+..+|+...++.+++..+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 45778899999998667888888876
No 79
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.69 E-value=1.5e+02 Score=19.61 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 144 DIMFQEINLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
.++...|..|+++...+..+|..|.-.+..
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888777766654
No 80
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=25.37 E-value=11 Score=30.74 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=15.6
Q ss_pred hccCCceEEEEeecCCccccc
Q 028961 37 ILCDADVGVFIFSNHGKLYEL 57 (201)
Q Consensus 37 vLCda~valivfs~~gk~~~~ 57 (201)
+-.+-|-.+-+|||.|++|+.
T Consensus 4 ~~~~yd~~~t~fSP~Grl~Qv 24 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQV 24 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHHH
T ss_pred CcCCccCCcccCCCCCchHHH
Confidence 344556778899999999863
No 81
>4div_A ORF48; distal tail protein, receptor-binding protein, phage basepla adsorption apparatus, genome injection device, viral protei; 3.80A {Lactococcus phage tp901-1}
Probab=25.30 E-value=2.7e+02 Score=22.56 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=18.9
Q ss_pred cCCCCCCCCCcccccccccCcccC
Q 028961 178 ANFGPITTNNIECPFAIPNEIFQF 201 (201)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
+..+..+..|+.-|.|.|..||++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~ 240 (299)
T 4div_A 217 NAIGTETDGFDSGPVFGGGTIYNV 240 (299)
T ss_dssp SCTTTCTTSTTCSSSTTCSCEEEE
T ss_pred cccccccCCCCCCCccCCceEEec
Confidence 445555777888999999999974
No 82
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=25.20 E-value=60 Score=19.05 Aligned_cols=35 Identities=29% Similarity=0.154 Sum_probs=19.3
Q ss_pred HHHHHhHHHHHHHHhhhhhhcCCCCCCCCHHHHHHH
Q 028961 92 DEINMLKQEIEILQKGLRYMFGGGTGTMTLDELLVL 127 (201)
Q Consensus 92 ~e~~kL~~ei~~l~~~~r~~~Ge~L~~Ls~~EL~~L 127 (201)
.++.+|.++|+.|+.....-+ ..|..-|..+|+.+
T Consensus 6 EEILRLErEIE~Lqrqke~~~-~~L~e~s~~eL~~~ 40 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQE-LSLTEASLQKLQER 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHH
Confidence 466777777777776532111 12444566666554
No 83
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=25.12 E-value=15 Score=29.37 Aligned_cols=19 Identities=37% Similarity=0.677 Sum_probs=12.2
Q ss_pred CCceEEEEeecCCcccc--cc
Q 028961 40 DADVGVFIFSNHGKLYE--LA 58 (201)
Q Consensus 40 da~valivfs~~gk~~~--~~ 58 (201)
+-|-++-+|||.|++|. |+
T Consensus 11 ~yd~~~t~fSp~Grl~QvEYA 31 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQVEYA 31 (264)
T ss_dssp -----CCCCCSSSSCHHHHHH
T ss_pred ccCCCcceECCCCeeHHHHhH
Confidence 44667889999999996 55
No 84
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=25.03 E-value=1.4e+02 Score=20.77 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 118 TMTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
++|++|+..+-...+..-... ..-.+++.+++..+.++...|..--..|...+..
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (135)
T 1q06_A 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALANA 111 (135)
T ss_dssp TCCHHHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888777655432110000 1113456666666666666666666666665543
No 85
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=24.86 E-value=2.1e+02 Score=21.01 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 119 MTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQD 169 (201)
Q Consensus 119 Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~ 169 (201)
-|..|.+.|+..-...+.+|+.++.+|- + +..-+-=-+.|.+-|..+..
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~Lq-e-L~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERIKQKQSQLQ-E-LILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHh
Confidence 4788999999998899999987665432 1 11111124667777776664
No 86
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=24.77 E-value=1.1e+02 Score=23.18 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 147 FQEINLLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 147 ~~~i~~l~~k~~~l~eeN~~L~~~~~ 172 (201)
.+.+..|+.+...|.++|..|...-.
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777766543
No 87
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.76 E-value=1.5e+02 Score=21.06 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=13.6
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 028961 114 GGTGTMTLDELLVLEKHLE 132 (201)
Q Consensus 114 e~L~~Ls~~EL~~LE~~Le 132 (201)
-||..|+-+|.+.+...|.
T Consensus 5 ~dls~LteeE~~~Il~Vl~ 23 (134)
T 1zbd_B 5 RKQEELTDEEKEIINRVIA 23 (134)
T ss_dssp ---CCCCSSHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHh
Confidence 3688999999988887775
No 88
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.69 E-value=1.2e+02 Score=19.44 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028961 152 LLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 152 ~l~~k~~~l~eeN~~L~~~~~ 172 (201)
.+...-..|..+|..|..++.
T Consensus 58 ~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333334455555555555554
No 89
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=23.46 E-value=1.3e+02 Score=18.54 Aligned_cols=29 Identities=3% Similarity=-0.037 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028961 114 GGTGTMTLDELLVLEKHLELWIYNIRSTK 142 (201)
Q Consensus 114 e~L~~Ls~~EL~~LE~~Le~~l~~IR~RK 142 (201)
.+|-++|.+||...-..|..-|-..|-.+
T Consensus 4 ~elr~~s~~EL~~~l~elk~ELf~LR~q~ 32 (67)
T 2zjr_V 4 SEMRNLQATDFAKEIDARKKELMELRFQA 32 (67)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777766666666666665443
No 90
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=23.10 E-value=2.4e+02 Score=21.20 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=27.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 114 GGTGTMTLDELLVLEKHLELWIYNIRSTKMDIM 146 (201)
Q Consensus 114 e~L~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll 146 (201)
-++++ |.++|+++-..|...+..+-+-|..+-
T Consensus 51 Lnid~-se~~L~e~ckELh~~I~~LEeEKYDlE 82 (182)
T 1ytz_I 51 LSLPG-SMQELQELSKKLHAKIDSVDEERYDTE 82 (182)
T ss_dssp CCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 36889 999999999999999999888776544
No 91
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.56 E-value=1.1e+02 Score=17.11 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 028961 158 GILTAANKYLQDKME 172 (201)
Q Consensus 158 ~~l~eeN~~L~~~~~ 172 (201)
.-|..|-..|+++++
T Consensus 34 aylekeianlrkkie 48 (49)
T 3he5_A 34 AYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 344555555665554
No 92
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=22.31 E-value=2.1e+02 Score=22.09 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 118 TMTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTA 162 (201)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~e 162 (201)
++|++|+..+-..-...+..+-..+.+.+.++|..|++....|..
T Consensus 63 g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 63 GTPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666655432211122223333344444555555544444443
No 93
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.26 E-value=1.7e+02 Score=19.17 Aligned_cols=20 Identities=45% Similarity=0.439 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 028961 154 RNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 154 ~~k~~~l~eeN~~L~~~~~~ 173 (201)
+.+...|..||..|+.++.+
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 94
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=21.67 E-value=15 Score=28.68 Aligned_cols=13 Identities=46% Similarity=0.907 Sum_probs=10.7
Q ss_pred EEEEeecCCcccc
Q 028961 44 GVFIFSNHGKLYE 56 (201)
Q Consensus 44 alivfs~~gk~~~ 56 (201)
++-+|||.|++|.
T Consensus 3 ~~t~fsp~Grl~Q 15 (242)
T 1ryp_E 3 GVSTFSPEGRLFQ 15 (242)
T ss_dssp CTTCBCTTSCBHH
T ss_pred CCceECCCCcChH
Confidence 4558999999996
No 95
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=21.53 E-value=13 Score=18.55 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=7.3
Q ss_pred CCcchhhhhhh
Q 028961 15 VHRQVTFCKRR 25 (201)
Q Consensus 15 ~~R~vTf~KRr 25 (201)
+.|++-|+||+
T Consensus 15 sKRRlvf~~rk 25 (26)
T 2zvv_Y 15 SKRRLIFSXXX 25 (26)
T ss_pred hhceEEEEecc
Confidence 45667777775
No 96
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=21.49 E-value=17 Score=28.33 Aligned_cols=15 Identities=33% Similarity=0.705 Sum_probs=12.1
Q ss_pred ceEEEEeecCCcccc
Q 028961 42 DVGVFIFSNHGKLYE 56 (201)
Q Consensus 42 ~valivfs~~gk~~~ 56 (201)
|-++-+|||.|++|.
T Consensus 3 d~~~t~fsp~Grl~Q 17 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQ 17 (241)
T ss_dssp CCCCSCCBTTTBCHH
T ss_pred CCCceeECCCCcchH
Confidence 345678999999996
No 97
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.37 E-value=1.8e+02 Score=18.92 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=38.0
Q ss_pred hHHHHHHHhHHHHHHHHhhhhhhcCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 89 DAKDEINMLKQEIEILQKGLRYMFGGGTGTM--TLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKY 166 (201)
Q Consensus 89 ~l~~e~~kL~~ei~~l~~~~r~~~Ge~L~~L--s~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~ 166 (201)
.++.++..+..+...+...+.++.+. ++++ .+++=..+-..+|.-+..+|.=-+.+....+ .|..+...|.+|-..
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~-~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~-dLE~kvesL~eEl~f 81 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAED-IMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARL-DLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34455555555544444444333221 1111 2233333445555555555555555555443 366677777777666
Q ss_pred HH
Q 028961 167 LQ 168 (201)
Q Consensus 167 L~ 168 (201)
|+
T Consensus 82 Lk 83 (86)
T 3swk_A 82 LK 83 (86)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 98
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=20.51 E-value=82 Score=18.66 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=13.3
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 028961 116 TGTMTLDELLVLEKHLEL 133 (201)
Q Consensus 116 L~~Ls~~EL~~LE~~Le~ 133 (201)
|..+|++||++.-..|+.
T Consensus 7 Lk~ls~eEL~~rl~~Ld~ 24 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALDP 24 (51)
T ss_dssp GGGSCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHccH
Confidence 667899999877655554
No 99
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.39 E-value=2.2e+02 Score=19.62 Aligned_cols=43 Identities=9% Similarity=0.236 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 028961 122 DELLVLEKHLELWIYNIRSTK--MDIMFQEINLLRNKEGILTAAN 164 (201)
Q Consensus 122 ~EL~~LE~~Le~~l~~IR~RK--~~ll~~~i~~l~~k~~~l~eeN 164 (201)
+...-|+.|++..-....+-. .+-+.++++.|..+...|+.+|
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 334445555554433322111 1223344444444444444443
No 100
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=20.38 E-value=9.7 Score=26.33 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=29.2
Q ss_pred cCCCCcchhhhhhhchHHHhHHHhhhccCCceEEEEeecCCcccccc
Q 028961 12 ENPVHRQVTFCKRRAGLLKKAKELSILCDADVGVFIFSNHGKLYELA 58 (201)
Q Consensus 12 en~~~R~vTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~ 58 (201)
.+......||-=.-.-|.++.-+||.+ |++.|+|.|+-|-.-
T Consensus 22 ~~k~~ytktFdV~vaNl~~~~idLsk~-----C~~a~~~~gkef~ld 63 (106)
T 3nrf_A 22 GDKHFRTQAFKVRLVNAAKSEISLKNS-----CLVAQSAAGQSFRLD 63 (106)
T ss_dssp TTEEEEEEEEEEEEECCSSSCEECTTC-----EEEEEETTSCEEEEE
T ss_pred CCeeEEEEEEEEEEecCCCCccccchh-----hheeeCcCCCEEEec
Confidence 334444555666666777777888855 799999999876543
Done!