Query 028961
Match_columns 201
No_of_seqs 183 out of 1537
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 08:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028961.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028961hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1egwa_ d.88.1.1 (A:) Myocyte 100.0 3.9E-39 2.9E-43 212.6 4.1 71 2-73 1-71 (71)
2 d1srsa_ d.88.1.1 (A:) Serum re 100.0 4.4E-37 3.2E-41 207.8 2.6 71 1-72 2-72 (84)
3 d1mnma_ d.88.1.1 (A:) MCM1 tra 100.0 1.2E-36 8.4E-41 207.1 2.7 73 2-75 3-75 (85)
4 d1bjta_ e.11.1.1 (A:) DNA topo 57.0 14 0.00098 32.2 7.4 27 44-73 556-582 (760)
5 d1r8ea1 a.6.1.3 (A:3-120) Tran 56.3 17 0.0012 23.2 6.4 20 143-162 86-105 (118)
6 d1uklc_ a.38.1.1 (C:) SREBP-2 55.1 8.5 0.00062 22.1 4.1 26 148-173 33-58 (61)
7 d1pvma3 g.41.13.1 (A:143-178) 49.1 5.6 0.00041 19.9 2.0 23 35-57 3-25 (36)
8 d1q08a_ a.6.1.3 (A:) Transcrip 47.3 26 0.0019 21.6 5.9 55 118-172 16-70 (94)
9 d1kafa_ d.199.1.1 (A:) DNA-bin 45.8 1.5 0.00011 28.4 -0.7 55 5-75 22-77 (108)
10 d1q06a_ a.6.1.3 (A:) Transcrip 45.1 23 0.0017 22.9 5.6 51 118-169 57-107 (127)
11 d1ukfa_ d.3.1.10 (A:) Avirulen 44.3 3.4 0.00025 29.9 1.1 41 32-74 131-175 (188)
12 d2oa5a1 d.362.1.1 (A:7-102) Un 43.7 34 0.0025 21.5 7.8 56 87-142 4-61 (96)
13 d1m2da_ c.47.1.11 (A:) Thiored 39.1 7.9 0.00057 24.5 2.2 27 46-72 63-89 (101)
14 d2oa5a1 d.362.1.1 (A:7-102) Un 38.7 12 0.00085 23.8 2.9 26 150-175 4-29 (96)
15 d1u3em2 d.285.1.1 (M:106-174) 35.8 8.3 0.0006 22.6 1.6 23 43-65 16-38 (69)
16 d1am9a_ a.38.1.1 (A:) SREBP-1a 33.8 33 0.0024 20.4 4.5 27 149-175 51-77 (80)
17 d1lvfa_ a.47.2.1 (A:) Syntaxin 29.1 63 0.0046 20.2 8.1 84 62-145 17-103 (106)
18 d1nlwa_ a.38.1.1 (A:) Mad prot 27.9 53 0.0039 19.2 4.8 23 150-172 56-78 (79)
19 d1u0la2 c.37.1.8 (A:69-293) Pr 27.4 64 0.0047 23.2 6.0 33 39-78 9-41 (225)
20 d1qnaa2 d.129.1.1 (A:116-198) 27.3 23 0.0017 21.4 2.9 58 5-70 12-70 (83)
21 d2zjrv1 a.2.2.1 (V:1-66) Ribos 26.7 51 0.0037 18.9 4.3 29 114-142 4-32 (66)
22 d1nkpa_ a.38.1.1 (A:) Myc prot 26.1 63 0.0046 19.3 5.3 26 149-174 60-85 (88)
23 d2vgba3 c.49.1.1 (A:440-573) P 25.5 15 0.0011 24.4 1.8 26 27-53 15-40 (134)
24 d2azea1 e.63.1.1 (A:199-346) T 24.8 95 0.0069 20.9 7.3 24 122-145 2-25 (148)
25 d1r8da_ a.6.1.3 (A:) Multidrug 24.1 55 0.004 20.2 4.5 11 118-128 59-69 (109)
26 d1iruc_ d.153.1.4 (C:) Proteas 24.1 5.5 0.0004 29.5 -0.9 15 42-56 5-19 (250)
27 d1yara1 d.153.1.4 (A:13-233) P 24.0 8.1 0.00059 27.9 0.1 12 47-58 2-15 (221)
28 d1z84a1 d.13.1.2 (A:23-195) Ga 23.3 21 0.0016 24.8 2.4 30 45-75 104-139 (173)
29 d1e52a_ a.2.9.1 (A:) C-termina 23.3 28 0.0021 19.6 2.5 39 117-155 8-50 (56)
30 d1yzma1 a.2.19.1 (A:456-501) F 22.6 57 0.0041 17.5 4.6 38 127-164 4-41 (46)
31 d1iruf_ d.153.1.4 (F:) Proteas 22.1 9.3 0.00068 28.0 0.1 15 44-58 6-22 (238)
32 d2veaa2 d.110.2.4 (A:327-514) 22.1 35 0.0025 24.0 3.4 48 26-75 24-74 (188)
33 d1guqa1 d.13.1.2 (A:2-177) Gal 20.9 24 0.0018 24.5 2.3 27 45-72 107-135 (176)
34 d1siga_ a.177.1.1 (A:) Sigma70 20.1 94 0.0069 22.9 5.9 57 93-151 217-273 (334)
No 1
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=3.9e-39 Score=212.59 Aligned_cols=71 Identities=44% Similarity=0.743 Sum_probs=68.7
Q ss_pred CccccceeeecCCCCcchhhhhhhchHHHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHHHhh
Q 028961 2 ARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKYLKS 73 (201)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY~~~ 73 (201)
||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|+ +|++++|++||..+
T Consensus 1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~-s~~~~~vl~ry~~~ 71 (71)
T d1egwa_ 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-STDMDKVLLKYTEY 71 (71)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEE-SSCHHHHHHHHHHC
T ss_pred CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEee-CCCHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999999 57999999999863
No 2
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.4e-37 Score=207.79 Aligned_cols=71 Identities=35% Similarity=0.528 Sum_probs=68.9
Q ss_pred CCccccceeeecCCCCcchhhhhhhchHHHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHHHh
Q 028961 1 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKYLK 72 (201)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY~~ 72 (201)
+||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|+|+ +|+++.|+++|..
T Consensus 2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~-s~~~~~vi~~~~~ 72 (84)
T d1srsa_ 2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TRKLQPMITSETG 72 (84)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEE-CGGGHHHHSSHHH
T ss_pred CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEee-CCCHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999 6899999999975
No 3
>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=1.2e-36 Score=207.05 Aligned_cols=73 Identities=33% Similarity=0.535 Sum_probs=69.8
Q ss_pred CccccceeeecCCCCcchhhhhhhchHHHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHHHhhcc
Q 028961 2 ARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKYLKSTQ 75 (201)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY~~~~~ 75 (201)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+ +|+|..||+||...+.
T Consensus 3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~-sp~v~~vl~r~~~~~~ 75 (85)
T d1mnma_ 3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-TPKFEPIVTQQEGRNL 75 (85)
T ss_dssp CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEE-CTTTTHHHHSHHHHHH
T ss_pred CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEecc-CCCHHHHHHHHhcccH
Confidence 899999999999999999999999999999999999999999999999999999999 6899999999986543
No 4
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=57.01 E-value=14 Score=32.24 Aligned_cols=27 Identities=15% Similarity=0.461 Sum_probs=22.6
Q ss_pred EEEEeecCCcccccccccchHHHHHHHHhh
Q 028961 44 GVFIFSNHGKLYELATNGTMQGLIEKYLKS 73 (201)
Q Consensus 44 alivfs~~gk~~~~~s~~~~~~VleRY~~~ 73 (201)
.+++|.++|+++.|. ++.+||..|-.+
T Consensus 556 Nm~l~d~~g~i~k~~---sl~eIL~~f~~~ 582 (760)
T d1bjta_ 556 NMVAFDPHGKIKKYN---SVNEILSEFYYV 582 (760)
T ss_dssp TEEEECTTSCEEEES---SHHHHHHHHHHH
T ss_pred ceeEEcCCCcccchh---hHHHHHHHHHHH
Confidence 478899999999886 689999988764
No 5
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=56.32 E-value=17 Score=23.24 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028961 143 MDIMFQEINLLRNKEGILTA 162 (201)
Q Consensus 143 ~~ll~~~i~~l~~k~~~l~e 162 (201)
.+.+.++++.|+...+.+..
T Consensus 86 ~~~l~~~i~~l~~~~~~l~~ 105 (118)
T d1r8ea1 86 ERQIREKLDFLSALEQTISL 105 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444333433
No 6
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.08 E-value=8.5 Score=22.08 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028961 148 QEINLLRNKEGILTAANKYLQDKMEE 173 (201)
Q Consensus 148 ~~i~~l~~k~~~l~eeN~~L~~~~~~ 173 (201)
+-|..|+++...|.+|+..|+.....
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888889999999999887754
No 7
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=49.11 E-value=5.6 Score=19.93 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=19.5
Q ss_pred hhhccCCceEEEEeecCCccccc
Q 028961 35 LSILCDADVGVFIFSNHGKLYEL 57 (201)
Q Consensus 35 LsvLCda~valivfs~~gk~~~~ 57 (201)
|+--||+-|-+-||...|..-.|
T Consensus 3 lcpkcgvgvl~pvy~~kgeikvf 25 (36)
T d1pvma3 3 LCPKCGVGVLEPVYNEKGEIKVF 25 (36)
T ss_dssp BCTTTSSSBEEEEECTTSCEEEE
T ss_pred cCCccCceEEEEeecCCCcEEEE
Confidence 56679999999999999976665
No 8
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=47.30 E-value=26 Score=21.63 Aligned_cols=55 Identities=11% Similarity=0.011 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 118 TMTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~~~~ 172 (201)
++|++|..+|-..-+..-..--..-..++.+++..+..+...|+.--..|.....
T Consensus 16 GFsL~EI~~ll~l~~~~~~~~c~~v~~l~~~kl~~i~~kI~~L~~l~~~L~~l~~ 70 (94)
T d1q08a_ 16 GFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (94)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889998888765432111001111355677777777777777666666655433
No 9
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the transcription factor MotA {Bacteriophage T4 [TaxId: 10665]}
Probab=45.80 E-value=1.5 Score=28.37 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=37.2
Q ss_pred ccceeee-cCCCCcchhhhhhhchHHHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHHHhhcc
Q 028961 5 KVQMKRI-ENPVHRQVTFCKRRAGLLKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKYLKSTQ 75 (201)
Q Consensus 5 Ki~ik~I-en~~~R~vTf~KRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY~~~~~ 75 (201)
+|++|.| +|.++=.++|+||.+|+-+ +- .-.+|.+--|+ -.-++..+..|.+...
T Consensus 22 ~i~lk~v~inRsNyev~f~krT~GiR~----fE-----------i~n~G~~RIfg-Ykm~e~~~q~Ft~lg~ 77 (108)
T d1kafa_ 22 GFVLKKVEIYRSNYLAILEKRTNGIRN----FE-----------INNNGNMRIFG-YKMMEHHIQKFTDIGM 77 (108)
T ss_dssp TCCEEEEEEETTEEEEEEEEEETTEEE----EE-----------ECTTSEEEEEE-ESCCHHHHHHHHTTTC
T ss_pred ceeEeeeeeccccceeehhhhcCceeE----EE-----------EecCCcEEEEe-eeccHHHHHHHhhcCc
Confidence 5788888 5778889999999999543 22 22456666665 4455666777766543
No 10
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=45.10 E-value=23 Score=22.91 Aligned_cols=51 Identities=10% Similarity=-0.031 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 118 TMTLDELLVLEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAANKYLQD 169 (201)
Q Consensus 118 ~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN~~L~~ 169 (201)
++|++|+.++-...+..-.... .-.+++.+++..+.++...+...-..|..
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (127)
T d1q06a_ 57 GFNLEESGELVNLFNDPQRHSA-DVKRRTLEKVAEIERHIEELQSMRDQLLA 107 (127)
T ss_dssp TCCHHHHHHHHHHHHCTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888776554443211111 11234455666666555444444444444
No 11
>d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
Probab=44.27 E-value=3.4 Score=29.88 Aligned_cols=41 Identities=17% Similarity=0.502 Sum_probs=26.3
Q ss_pred HHHhhhccCCceEEEEeecC-Cccccccccc---chHHHHHHHHhhc
Q 028961 32 AKELSILCDADVGVFIFSNH-GKLYELATNG---TMQGLIEKYLKST 74 (201)
Q Consensus 32 A~ELsvLCda~valivfs~~-gk~~~~~s~~---~~~~VleRY~~~~ 74 (201)
|+=+++-|+-+= +++|.|+ |. |+|+|.. .++.+.+||...-
T Consensus 131 aHaVA~~v~~~~-vtfFDPNfGE-F~~ps~~~~~~~~~l~~~y~~~~ 175 (188)
T d1ukfa_ 131 GHAIACSCEGSQ-FKLFDPNLGE-FQSSRSAAPQLIKGLIDHYNSLN 175 (188)
T ss_dssp EEEEEEEEETTE-EEEEETTTEE-EEEETTTHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEcCCc-eEEECCCCcc-eecCchhHHHHHHHHHHHhcCCC
Confidence 344555565554 6788887 55 6677532 6778888887643
No 12
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=43.70 E-value=34 Score=21.51 Aligned_cols=56 Identities=13% Similarity=0.017 Sum_probs=38.2
Q ss_pred chhHHHHHHHhHHHHHHHHhhhhhhc--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028961 87 PLDAKDEINMLKQEIEILQKGLRYMF--GGGTGTMTLDELLVLEKHLELWIYNIRSTK 142 (201)
Q Consensus 87 ~~~l~~e~~kL~~ei~~l~~~~r~~~--Ge~L~~Ls~~EL~~LE~~Le~~l~~IR~RK 142 (201)
-+.+..++.+|+-++..|.+.+++-. +.+-..|+..+=+.+-.+...+|...-.+|
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~~~~~~~~d~~LT~~qke~~I~s~~~~lts~A~kK 61 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 61 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999887642 334567999887777777666666555444
No 13
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=39.13 E-value=7.9 Score=24.52 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=21.0
Q ss_pred EEeecCCcccccccccchHHHHHHHHh
Q 028961 46 FIFSNHGKLYELATNGTMQGLIEKYLK 72 (201)
Q Consensus 46 ivfs~~gk~~~~~s~~~~~~VleRY~~ 72 (201)
|++-|.|.+|...+...+.+||+++..
T Consensus 63 v~i~P~~~~Y~~v~~e~v~~Iv~~hl~ 89 (101)
T d1m2da_ 63 VVVYPDGVWYGQVKPEDVDEIVEKHLK 89 (101)
T ss_dssp EEEETTTEEECSCCGGGHHHHHHHTTT
T ss_pred EEEcCCccEEecCCHHHHHHHHHHHHH
Confidence 445578888887777799999998754
No 14
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=38.73 E-value=12 Score=23.82 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028961 150 INLLRNKEGILTAANKYLQDKMEENN 175 (201)
Q Consensus 150 i~~l~~k~~~l~eeN~~L~~~~~~~~ 175 (201)
++.|..+...|+=||..|++++...+
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~~~ 29 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKSSG 29 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46777888899999999999998764
No 15
>d1u3em2 d.285.1.1 (M:106-174) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
Probab=35.83 E-value=8.3 Score=22.63 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=16.9
Q ss_pred eEEEEeecCCcccccccccchHH
Q 028961 43 VGVFIFSNHGKLYELATNGTMQG 65 (201)
Q Consensus 43 valivfs~~gk~~~~~s~~~~~~ 65 (201)
--++|.||+|.-|.|+|...+-+
T Consensus 16 kpIyvis~sGh~y~f~s~~kAae 38 (69)
T d1u3em2 16 KPIIVISPDGIEKEYPSTKCACE 38 (69)
T ss_dssp CCEEEECTTSCEEEESCHHHHHH
T ss_pred CCEEEEcCCCceEEcchHHHHHH
Confidence 34788999999999986444333
No 16
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.84 E-value=33 Score=20.40 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028961 149 EINLLRNKEGILTAANKYLQDKMEENN 175 (201)
Q Consensus 149 ~i~~l~~k~~~l~eeN~~L~~~~~~~~ 175 (201)
-|..|+.+...|.++|..|+..+.++.
T Consensus 51 yI~~L~~~~~~L~~e~~~lk~~~~~~~ 77 (80)
T d1am9a_ 51 YIRFLQHSNQKLKQENLSLRTAVHKSK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455666777778888888877776543
No 17
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.09 E-value=63 Score=20.21 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=52.2
Q ss_pred chHHHHHHHHhhccCCCCCCcc--cCCchhHHHHHHHhHHHHHHHHhhhhhhcCCC-CCCCCHHHHHHHHHHHHHHHHHH
Q 028961 62 TMQGLIEKYLKSTQGAQAEPVM--QTQPLDAKDEINMLKQEIEILQKGLRYMFGGG-TGTMTLDELLVLEKHLELWIYNI 138 (201)
Q Consensus 62 ~~~~VleRY~~~~~~~~~~~~~--~~~~~~l~~e~~kL~~ei~~l~~~~r~~~Ge~-L~~Ls~~EL~~LE~~Le~~l~~I 138 (201)
.|..+..+|............. ......++..+..++.+++.|+...+-....+ =-+++..||..-.+.+...-..|
T Consensus 17 ~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l~~~ei~~Rr~fi~~~~~~I 96 (106)
T d1lvfa_ 17 TAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQIV 96 (106)
T ss_dssp HHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 5667777887665543221100 01133456666778888888888766444322 12588999998888888777777
Q ss_pred HHHHHHH
Q 028961 139 RSTKMDI 145 (201)
Q Consensus 139 R~RK~~l 145 (201)
..-|.++
T Consensus 97 ~~~~~~l 103 (106)
T d1lvfa_ 97 RDMKDQM 103 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 18
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.91 E-value=53 Score=19.21 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028961 150 INLLRNKEGILTAANKYLQDKME 172 (201)
Q Consensus 150 i~~l~~k~~~l~eeN~~L~~~~~ 172 (201)
+..+..+...|..++..|+.++.
T Consensus 56 ~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 56 DRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455556666777766664
No 19
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=27.40 E-value=64 Score=23.21 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=21.8
Q ss_pred cCCceEEEEeecCCcccccccccchHHHHHHHHhhccCCC
Q 028961 39 CDADVGVFIFSNHGKLYELATNGTMQGLIEKYLKSTQGAQ 78 (201)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~~~~~~VleRY~~~~~~~~ 78 (201)
-++|.++||+|.....+ . -..|+||.-......
T Consensus 9 ANiD~vliV~s~~~P~~--~-----~~~ldR~Lv~a~~~~ 41 (225)
T d1u0la2 9 ANVDQVILVVTVKMPET--S-----TYIIDKFLVLAEKNE 41 (225)
T ss_dssp ESCCEEEEEECSSTTCC--C-----HHHHHHHHHHHHHTT
T ss_pred ccCCEEEEEEeCCCCCC--C-----HHHHHHHHHHHHHcC
Confidence 47899999998654222 2 137899987655443
No 20
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=27.33 E-value=23 Score=21.43 Aligned_cols=58 Identities=10% Similarity=0.193 Sum_probs=32.9
Q ss_pred ccceeeecCCCCcchhhhh-hhchHHHhHHHhhhccCCceEEEEeecCCcccccccccchHHHHHHH
Q 028961 5 KVQMKRIENPVHRQVTFCK-RRAGLLKKAKELSILCDADVGVFIFSNHGKLYELATNGTMQGLIEKY 70 (201)
Q Consensus 5 Ki~ik~Ien~~~R~vTf~K-Rr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~~~~~VleRY 70 (201)
+|.+..|.......++|-. +..||.=| +.+-.+++.||| +||+.--+ ..+++++-.-|
T Consensus 12 ~I~L~~la~~~~~~~~YePe~fpgl~~R------~~~pk~~~lIF~-SGkivitG-aks~~~~~~a~ 70 (83)
T d1qnaa2 12 PIRLEGLAYSHAAFSSYEPELFPGLIYR------MKVPKIVLLIFV-SGKIVITG-AKMRDETYKAF 70 (83)
T ss_dssp CBCHHHHHHHTTTTEECCTTTCSSEEEE------ETTTTEEEEECT-TSEEEEEE-ESSHHHHHHHH
T ss_pred CccHHHHHHhhhhhcccChhhCCeEEEE------ECCCCeEEEEEc-CCEEEEEC-CCCHHHHHHHH
Confidence 3444444433333455653 33776533 345678999999 58888765 33444444443
No 21
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=26.67 E-value=51 Score=18.91 Aligned_cols=29 Identities=3% Similarity=-0.037 Sum_probs=18.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028961 114 GGTGTMTLDELLVLEKHLELWIYNIRSTK 142 (201)
Q Consensus 114 e~L~~Ls~~EL~~LE~~Le~~l~~IR~RK 142 (201)
.+|-++|.+||......|...+-..|-.+
T Consensus 4 ~elr~~s~~eL~~~l~~lk~elf~LRfq~ 32 (66)
T d2zjrv1 4 SEMRNLQATDFAKEIDARKKELMELRFQA 32 (66)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777766666666666665433
No 22
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.13 E-value=63 Score=19.27 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028961 149 EINLLRNKEGILTAANKYLQDKMEEN 174 (201)
Q Consensus 149 ~i~~l~~k~~~l~eeN~~L~~~~~~~ 174 (201)
++..|..+...|..+|..|..++.+.
T Consensus 60 ~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 60 EEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555666677777666553
No 23
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.53 E-value=15 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=21.1
Q ss_pred hHHHhHHHhhhccCCceEEEEeecCCc
Q 028961 27 GLLKKAKELSILCDADVGVFIFSNHGK 53 (201)
Q Consensus 27 GL~KKA~ELsvLCda~valivfs~~gk 53 (201)
.+-.=|-+++.-++|. |+|||+.+|.
T Consensus 15 aia~sav~~A~~l~a~-aIvv~T~sG~ 40 (134)
T d2vgba3 15 VTAIGAVEAAFKCCAA-AIIVLTTTGR 40 (134)
T ss_dssp HHHHHHHHHHHHHTCS-EEEEECSSSH
T ss_pred HHHHHHHHHHHhCCCC-EEEEEcCCcH
Confidence 4555578899999998 5999999986
No 24
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.81 E-value=95 Score=20.88 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 122 DELLVLEKHLELWIYNIRSTKMDI 145 (201)
Q Consensus 122 ~EL~~LE~~Le~~l~~IR~RK~~l 145 (201)
.|.+.|+......+.+|+.++.+|
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~L 25 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQL 25 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888766543
No 25
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=24.12 E-value=55 Score=20.22 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=7.4
Q ss_pred CCCHHHHHHHH
Q 028961 118 TMTLDELLVLE 128 (201)
Q Consensus 118 ~Ls~~EL~~LE 128 (201)
++|++|+..+-
T Consensus 59 G~sl~eI~~~l 69 (109)
T d1r8da_ 59 GFRLDEIKEML 69 (109)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 46777777664
No 26
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.07 E-value=5.5 Score=29.52 Aligned_cols=15 Identities=47% Similarity=0.800 Sum_probs=12.3
Q ss_pred ceEEEEeecCCcccc
Q 028961 42 DVGVFIFSNHGKLYE 56 (201)
Q Consensus 42 ~valivfs~~gk~~~ 56 (201)
|-++-+|||+|++|+
T Consensus 5 d~~~t~fsp~Grl~Q 19 (250)
T d1iruc_ 5 DSRTTIFSPEGRLYQ 19 (250)
T ss_dssp CCCTTCCCTTSCCHH
T ss_pred CCCCeeECCCCcchH
Confidence 456678999999996
No 27
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=24.04 E-value=8.1 Score=27.86 Aligned_cols=12 Identities=42% Similarity=0.952 Sum_probs=10.0
Q ss_pred EeecCCcccc--cc
Q 028961 47 IFSNHGKLYE--LA 58 (201)
Q Consensus 47 vfs~~gk~~~--~~ 58 (201)
||||+|++|+ |+
T Consensus 2 ~fsp~G~l~QvEYa 15 (221)
T d1yara1 2 VFSPDGRLFQVEYA 15 (221)
T ss_dssp CCCTTSCCHHHHHH
T ss_pred eECCCCcchHHHHH
Confidence 6999999986 54
No 28
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.33 E-value=21 Score=24.77 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=19.2
Q ss_pred EEEeecC--CcccccccccchHHHH----HHHHhhcc
Q 028961 45 VFIFSNH--GKLYELATNGTMQGLI----EKYLKSTQ 75 (201)
Q Consensus 45 livfs~~--gk~~~~~s~~~~~~Vl----eRY~~~~~ 75 (201)
||||||. ..+.+++ ...+..|+ +||..+..
T Consensus 104 VIi~sp~H~~~l~~~~-~e~i~~v~~~~~~r~~~l~~ 139 (173)
T d1z84a1 104 VVIESPVHSIQLSDID-PVGIGDILIAYKKRINQIAQ 139 (173)
T ss_dssp EEECCSSSSCCGGGSC-HHHHHHHHHHHHHHHHHHTT
T ss_pred eEEeCccccCChhhCC-HHHHHHHHHHHHHHHHHHHc
Confidence 8999997 4566666 45566666 45555543
No 29
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=23.32 E-value=28 Score=19.57 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=18.7
Q ss_pred CCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 117 GTMTLDELLV----LEKHLELWIYNIRSTKMDIMFQEINLLRN 155 (201)
Q Consensus 117 ~~Ls~~EL~~----LE~~Le~~l~~IR~RK~~ll~~~i~~l~~ 155 (201)
-++|.++|.. |+..+..+-....--+.-.+-++|..|++
T Consensus 8 ~~ls~~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~ 50 (56)
T d1e52a_ 8 MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 50 (56)
T ss_dssp CCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 3466666443 33444444444444444455555555543
No 30
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.56 E-value=57 Score=17.50 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 127 LEKHLELWIYNIRSTKMDIMFQEINLLRNKEGILTAAN 164 (201)
Q Consensus 127 LE~~Le~~l~~IR~RK~~ll~~~i~~l~~k~~~l~eeN 164 (201)
|.++++..-.=|+.-|..-=.++++.|.+..+.|++|-
T Consensus 4 llqQi~~ik~yI~QAk~a~R~dEV~~Le~NLreLq~e~ 41 (46)
T d1yzma1 4 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666777777777777776664
No 31
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.13 E-value=9.3 Score=27.95 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=11.8
Q ss_pred EEEEeecCCcccc--cc
Q 028961 44 GVFIFSNHGKLYE--LA 58 (201)
Q Consensus 44 alivfs~~gk~~~--~~ 58 (201)
++=||||+|++++ |+
T Consensus 6 ~~tiFsp~Grl~QvEYA 22 (238)
T d1iruf_ 6 DVTVWSPQGRIHQIEYA 22 (238)
T ss_dssp CTTCCCTTSCCHHHHHH
T ss_pred CCeeECCCCcchHHHHH
Confidence 4458999999996 65
No 32
>d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=22.07 E-value=35 Score=23.99 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=34.2
Q ss_pred chHHHhHHHhhhccCCceEEEEeecCCccccccccc---chHHHHHHHHhhcc
Q 028961 26 AGLLKKAKELSILCDADVGVFIFSNHGKLYELATNG---TMQGLIEKYLKSTQ 75 (201)
Q Consensus 26 ~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~~---~~~~VleRY~~~~~ 75 (201)
.||..-..+|.-|++|+-++|++. |..+.++..| .+..+++-....+.
T Consensus 24 ~~l~~~~~~ll~l~~A~G~al~~~--~~~~~~G~~P~~~~i~~L~~wl~~~~~ 74 (188)
T d2veaa2 24 EGLTNHPDRLLGLTGSQGAAICFG--EKLILVGETPDEKAVQYLLQWLENREV 74 (188)
T ss_dssp HHHHTCHHHHHHTTTCSEEEEEET--TEEEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHhhcCCCEEEEEEC--CEEEEeCCCcCHHHHHHHHHHHHhcCC
Confidence 367788889999999999999887 6777776544 45555554444433
No 33
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=20.86 E-value=24 Score=24.51 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=17.5
Q ss_pred EEEeecC--CcccccccccchHHHHHHHHh
Q 028961 45 VFIFSNH--GKLYELATNGTMQGLIEKYLK 72 (201)
Q Consensus 45 livfs~~--gk~~~~~s~~~~~~VleRY~~ 72 (201)
||||||. ..+.+++ ...+..||.-|+.
T Consensus 107 VIi~sp~H~~~l~~~~-~~~i~~vl~a~~~ 135 (176)
T d1guqa1 107 VICFSPDHSKTLPELS-VAALTEIVKTWQE 135 (176)
T ss_dssp EEESCSCTTCCGGGSC-HHHHHHHHHHHHH
T ss_pred EEEECcccccChhhCC-HHHHHHHHHHHHH
Confidence 7888887 3455665 4567777765543
No 34
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Probab=20.07 E-value=94 Score=22.92 Aligned_cols=57 Identities=9% Similarity=0.202 Sum_probs=38.3
Q ss_pred HHHHhHHHHHHHHhhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028961 93 EINMLKQEIEILQKGLRYMFGGGTGTMTLDELLVLEKHLELWIYNIRSTKMDIMFQEIN 151 (201)
Q Consensus 93 e~~kL~~ei~~l~~~~r~~~Ge~L~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~~i~ 151 (201)
.+.....++...+..+..+. .-.++++.++..+-..+..+-...+.-|.+++...+.
T Consensus 217 ~l~~~~~~I~~~q~kl~~ie--~~~gl~~~elk~i~~~i~~ge~~~~~ak~~~~~~~~~ 273 (334)
T d1siga_ 217 KLHDVSEEVHRALQKLQQIE--EETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLR 273 (334)
T ss_dssp HGGGTHHHHHHHHHHHHHHH--HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHhhHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHhhccchHHHHHHhHHH
Confidence 33344444444444443332 1245899999999999999999999888887765443
Done!