Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>028962
MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN
SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD
ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALLDS
HLSLMQKPYALFSSTYFCCCY

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028962
        (201 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q55356 - symbol:psb28 "Photosystem II reaction ...   264  7.8e-23   1


>UNIPROTKB|Q55356 [details] [associations]
            symbol:psb28 "Photosystem II reaction center Psb28 protein"
            species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
            [GO:0030096 "plasma membrane-derived thylakoid photosystem II"
            evidence=IDA] HAMAP:MF_01370 InterPro:IPR005610 Pfam:PF03912
            ProDom:PD012692 EMBL:BA000022 GenomeReviews:BA000022_GR
            GO:GO:0015979 GO:GO:0042651 GO:GO:0030096 GO:GO:0009654 EMBL:D82937
            PIR:S74466 RefSeq:NP_439938.1 RefSeq:YP_005649993.1 PDB:2KVO
            PDBsum:2KVO ProteinModelPortal:Q55356 IntAct:Q55356 STRING:Q55356
            GeneID:12253746 GeneID:952386 KEGG:syn:sll1398 KEGG:syy:SYNGTS_0040
            PATRIC:23836938 eggNOG:NOG08123 HOGENOM:HOG000238646 KO:K08903
            OMA:ERFMRFA ProtClustDB:PRK13612 BioCyc:MetaCyc:PSBW-MONOMER
            EvolutionaryTrace:Q55356 TIGRFAMs:TIGR03047 Uniprot:Q55356
        Length = 112

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 51/97 (52%), Positives = 69/97 (71%)

Query:    75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
             IQF +G  E  VP+V+L+KS++G +GMA F F EP++  +     DITG Y+ID+EG + 
Sbjct:     4 IQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTIL-AKESTDDITGMYLIDDEGEII 62

Query:   135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
             + +V  KF+NGRP+ IEA  I+ S  EWDRFMRFMER
Sbjct:    63 TREVKGKFINGRPTAIEATVILNSQPEWDRFMRFMER 99


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.132   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      201       201   0.00089  111 3  11 22  0.44    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  164 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.87u 0.12s 18.99t   Elapsed:  00:00:01
  Total cpu time:  18.87u 0.12s 18.99t   Elapsed:  00:00:01
  Start:  Fri May 10 00:21:43 2013   End:  Fri May 10 00:21:44 2013

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