BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028962
(201 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225437969|ref|XP_002271666.1| PREDICTED: photosystem II reaction center PSB28 protein,
chloroplastic [Vitis vinifera]
gi|297744226|emb|CBI37196.3| unnamed protein product [Vitis vinifera]
Length = 179
Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/171 (73%), Positives = 146/171 (85%), Gaps = 4/171 (2%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MAAL+SLA SP+SHC +SP LSG+ +WAVH SA S FNG+S+H+PR + + + R+
Sbjct: 1 MAALQSLAFTSPLSHCCK---QSP-LSGLSSWAVHRSAHSSFNGRSLHLPRPQWAALKRS 56
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
S SG ITM VKPTIQFIQGTDE TVPDV+LT+SRDG+NGMAIF F +PSVFDSSGE+GD
Sbjct: 57 SSTSGLITMMVKPTIQFIQGTDEQTVPDVRLTQSRDGTNGMAIFKFEQPSVFDSSGEVGD 116
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
ITGFYMIDEEG LQSVDVSAKF+NG+PS IEAKY+MRSPREWDRFMRFMER
Sbjct: 117 ITGFYMIDEEGVLQSVDVSAKFINGKPSGIEAKYVMRSPREWDRFMRFMER 167
>gi|118488045|gb|ABK95843.1| unknown [Populus trichocarpa]
Length = 181
Score = 239 bits (609), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/171 (69%), Positives = 142/171 (83%), Gaps = 2/171 (1%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MA L+SLALASP++ H Q ++ S SG +WAV+ S+ S FNGQS+ +PR+RL + R
Sbjct: 1 MATLQSLALASPVAQ--HLQHQTRSFSGSGSWAVNKSSYSLFNGQSLCLPRLRLPLIRRK 58
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
+ SG +TM VKP IQF+QG DE TVPDV+LTKSRDG+NGMAIF+F +PSVFDSS E+GD
Sbjct: 59 LRTSGLVTMMVKPAIQFVQGADEQTVPDVRLTKSRDGTNGMAIFTFDQPSVFDSSAEVGD 118
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
ITGFYMIDEEG LQSVDV+AKFVNG+P RIEAKYIMR+PREWDRFMRFME+
Sbjct: 119 ITGFYMIDEEGILQSVDVNAKFVNGKPERIEAKYIMRTPREWDRFMRFMEK 169
>gi|388491040|gb|AFK33586.1| unknown [Lotus japonicus]
Length = 179
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 111/171 (64%), Positives = 135/171 (78%), Gaps = 4/171 (2%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MA L SLAL+SP+S+ + P L + + V S+ S FNGQ +H+P +RL +T+N
Sbjct: 1 MATLHSLALSSPLSNSI----QKPRLYSVPSSIVQRSSNSSFNGQHLHLPHLRLPKLTQN 56
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
+ + P+ M VKP IQFIQG DELT+PDV+LTKSRDG+NGMAIF F +PSVFD+SGE+GD
Sbjct: 57 TAMHTPVIMMVKPAIQFIQGNDELTIPDVRLTKSRDGTNGMAIFKFEQPSVFDASGEVGD 116
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
ITG YMIDEEG LQS DVSAKF+NG+PS IEAKYIMR+PREWDRFMRFMER
Sbjct: 117 ITGLYMIDEEGVLQSTDVSAKFINGKPSIIEAKYIMRTPREWDRFMRFMER 167
>gi|351725219|ref|NP_001235805.1| uncharacterized protein LOC100306491 [Glycine max]
gi|255628701|gb|ACU14695.1| unknown [Glycine max]
Length = 179
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/171 (66%), Positives = 137/171 (80%), Gaps = 4/171 (2%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MA L SLAL+SP+S+ + P + + VH S S FNGQ++H+P +RL + +N
Sbjct: 1 MATLHSLALSSPLSNSL----QKPRSCAVPSSIVHQSTNSSFNGQTLHLPCLRLPVLRQN 56
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
+ + P+ M VKP IQFIQGTDE T+PDV+LTKSRDG+NGMAIF+F +PSVFDSSGEIGD
Sbjct: 57 TPMHMPVIMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDQPSVFDSSGEIGD 116
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
ITGFYMIDEEG LQSVDVSAKFVNG+PS IEAKY+MRSPR+WDRFMRFMER
Sbjct: 117 ITGFYMIDEEGVLQSVDVSAKFVNGKPSIIEAKYVMRSPRDWDRFMRFMER 167
>gi|255571176|ref|XP_002526538.1| Photosystem II reaction center W protein, putative [Ricinus
communis]
gi|223534099|gb|EEF35816.1| Photosystem II reaction center W protein, putative [Ricinus
communis]
Length = 178
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/171 (69%), Positives = 139/171 (81%), Gaps = 5/171 (2%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MA L+SLA ASP+SH H Q+RS G WAVH A+SPF+G+S+ + +L+ +
Sbjct: 1 MATLQSLAFASPVSHYSH-QTRS--FPGSFCWAVHRIARSPFSGKSLRLSHPQLTSTRQK 57
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
S S ITM KP+IQFIQGTDE T+PDV+LTKSRDG+NGMAIF+F EPSVFDSS E+GD
Sbjct: 58 S--SRFITMMAKPSIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDEPSVFDSSAELGD 115
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
ITGFYMIDEEG LQSVDVSAKFVNG+P+RIEAKY+MRSPREWDRFMRFMER
Sbjct: 116 ITGFYMIDEEGVLQSVDVSAKFVNGKPARIEAKYVMRSPREWDRFMRFMER 166
>gi|356537186|ref|XP_003537110.1| PREDICTED: photosystem II reaction center PSB28 protein,
chloroplastic-like [Glycine max]
Length = 179
Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 113/171 (66%), Positives = 135/171 (78%), Gaps = 4/171 (2%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRN 60
MA L SLAL+SP+S+ + P + + VH S S FNGQ++ MP +RL + ++
Sbjct: 1 MATLHSLALSSPLSNSL----QKPHSYAVPSSIVHQSTNSSFNGQTLRMPCLRLPVLRQS 56
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
+ + P+ M KP IQFIQGTDE T+PDV+LTKSRDG+NGMAIF+F +PSVFDSSGEIGD
Sbjct: 57 TPMHMPVIMMAKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDQPSVFDSSGEIGD 116
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
ITGFYMIDEEG LQSVDVSAKFVNG+PS IEAKY+MRSPREWDRFMRFMER
Sbjct: 117 ITGFYMIDEEGVLQSVDVSAKFVNGKPSIIEAKYVMRSPREWDRFMRFMER 167
>gi|388494372|gb|AFK35252.1| unknown [Medicago truncatula]
Length = 182
Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 138/174 (79%), Gaps = 7/174 (4%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQ--SPFNGQSVHMPRMRLSPVT 58
MA + SLA +SP+ + + RS S + ++ +HGS S FNGQ +H+P +RL +T
Sbjct: 1 MATMHSLAFSSPLYNSIQ-KPRSYSATSLI---IHGSLNLNSSFNGQHLHVPSLRLPMIT 56
Query: 59 RNSKVSGP-ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE 117
+ + + P I MA KP IQFIQG+DELT+PDVKLTKS+DG+NGMAIF F +PSVFDSSGE
Sbjct: 57 QKTPMHMPVIMMAGKPKIQFIQGSDELTIPDVKLTKSKDGTNGMAIFRFDQPSVFDSSGE 116
Query: 118 IGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+GDITGFYMIDEEG LQSVDV+AKFVNG+PS IEAKYIMR+PR+WDRFMRFMER
Sbjct: 117 VGDITGFYMIDEEGVLQSVDVNAKFVNGKPSGIEAKYIMRTPRDWDRFMRFMER 170
>gi|449445636|ref|XP_004140578.1| PREDICTED: photosystem II reaction center PSB28 protein,
chloroplastic-like [Cucumis sativus]
Length = 221
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/176 (61%), Positives = 134/176 (76%), Gaps = 10/176 (5%)
Query: 1 MAALRSLA-LASPIS-HCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVT 58
MA+L+SLA SP S H HP S P LS +++H SA S F+G+S+ + + +T
Sbjct: 39 MASLQSLASTTSPSSPHLLHPSSTKPKLS----YSLHSSAFSSFHGRSLSLSTTKCHTLT 94
Query: 59 RNS---KVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS 115
R + + PI M V P IQFIQGTDE T+PDV+LTKSRDG+NGMAIF F +PSVFDSS
Sbjct: 95 RRTYRQRSWNPILM-VLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 153
Query: 116 GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
E+GDITGFYMIDEEG +QSVDV+AKF+NG+P+ IEAKY+MR+PREWDRFMRFMER
Sbjct: 154 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMER 209
>gi|449487345|ref|XP_004157580.1| PREDICTED: photosystem II reaction center PSB28 protein,
chloroplastic-like [Cucumis sativus]
Length = 226
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/176 (61%), Positives = 134/176 (76%), Gaps = 10/176 (5%)
Query: 1 MAALRSLA-LASPIS-HCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVT 58
MA+L+SLA SP S H HP S P LS +++H SA S F+G+S+ + + +T
Sbjct: 44 MASLQSLASTTSPSSPHLLHPSSTKPKLS----YSLHSSAFSSFHGRSLSLSTTKCHTLT 99
Query: 59 RNS---KVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS 115
R + + PI M V P IQFIQGTDE T+PDV+LTKSRDG+NGMAIF F +PSVFDSS
Sbjct: 100 RRTYRQRSWNPILM-VLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 158
Query: 116 GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
E+GDITGFYMIDEEG +QSVDV+AKF+NG+P+ IEAKY+MR+PREWDRFMRFMER
Sbjct: 159 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMER 214
>gi|357122411|ref|XP_003562909.1| PREDICTED: photosystem II reaction center PSB28 protein,
chloroplastic-like [Brachypodium distachyon]
Length = 179
Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 101/169 (59%), Positives = 132/169 (78%), Gaps = 3/169 (1%)
Query: 4 LRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSA-QSPFNGQSVHMPRMRLSPVTRNSK 62
+++LA+ASP++ P+ R +++G+ + Q+ F G S+H R + P TR S
Sbjct: 1 MKALAVASPVAAA-QPRRRCLAVAGVPCHRIMSQQLQTSFTGVSLHR-RQQHKPSTRPSS 58
Query: 63 VSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDIT 122
+ MA +P+IQFIQGTDE TVPDV+LTKSRDGSNG+A+F+F +PSVFDSS E+GDIT
Sbjct: 59 SVVAMAMASRPSIQFIQGTDEQTVPDVRLTKSRDGSNGVAVFTFDQPSVFDSSAELGDIT 118
Query: 123 GFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
GFYMIDEEGTLQ+VDVSAKFVNG+P+ +EAKY+MR+PR+WDRFMRFMER
Sbjct: 119 GFYMIDEEGTLQTVDVSAKFVNGKPAAVEAKYVMRTPRDWDRFMRFMER 167
>gi|125529042|gb|EAY77156.1| hypothetical protein OsI_05122 [Oryza sativa Indica Group]
Length = 180
Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 128/170 (75%), Gaps = 4/170 (2%)
Query: 2 AALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRNS 61
A +++LA+ASPIS P+ SG + ++H S F G S+ R + + + R+
Sbjct: 3 AVMKALAVASPISARAQPRRCPAGSSGGPSQSLHSS----FGGVSLQCRRTKPASLHRSR 58
Query: 62 KVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDI 121
+ MA +P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDI
Sbjct: 59 PSVQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDI 118
Query: 122 TGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
TGFYMID+EG LQSVDVSAKFVNG+P+ IEAKY+MR+PREWDRFMRFMER
Sbjct: 119 TGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMER 168
>gi|122064924|sp|Q0JG75.2|PSB28_ORYSJ RecName: Full=Photosystem II reaction center PSB28 protein,
chloroplastic; AltName: Full=Photosystem II protein
W-like; Flags: Precursor
gi|57899200|dbj|BAD87310.1| putative photosystem II protein reaction center W [Oryza sativa
Japonica Group]
gi|125573262|gb|EAZ14777.1| hypothetical protein OsJ_04705 [Oryza sativa Japonica Group]
gi|215769143|dbj|BAH01372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 180
Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 128/170 (75%), Gaps = 4/170 (2%)
Query: 2 AALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRNS 61
A +++LA+ASPIS P+ SG + ++H S F G S+ R + + + R+
Sbjct: 3 AVMKALAVASPISARAQPRRCPAGSSGGPSQSLHSS----FGGVSLQCRRTKPASLHRSR 58
Query: 62 KVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDI 121
+ MA +P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDI
Sbjct: 59 PSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDI 118
Query: 122 TGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
TGFYMID+EG LQSVDVSAKFVNG+P+ IEAKY+MR+PREWDRFMRFMER
Sbjct: 119 TGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMER 168
>gi|242055531|ref|XP_002456911.1| hypothetical protein SORBIDRAFT_03g045320 [Sorghum bicolor]
gi|241928886|gb|EES02031.1| hypothetical protein SORBIDRAFT_03g045320 [Sorghum bicolor]
Length = 176
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/171 (60%), Positives = 127/171 (74%), Gaps = 10/171 (5%)
Query: 2 AALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMP-RMRLSPVTRN 60
A +++LA+ASP+S Q R G QS F+G SV P R R + R
Sbjct: 3 AVMKALAVASPVSARAAQQPRRYVAGG------ASQLQSSFHGVSVQCPGRPRQATPRRG 56
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
+V + MA +P+IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GD
Sbjct: 57 VQV---VMMAARPSIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEQPSVFDSSAELGD 113
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
ITG YMID+EG LQSVDVSAKFVNG+P+RIEAKY+MR+PR+WDRFMRFMER
Sbjct: 114 ITGLYMIDDEGVLQSVDVSAKFVNGKPARIEAKYVMRTPRDWDRFMRFMER 164
>gi|326519394|dbj|BAJ96696.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 182
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 128/173 (73%), Gaps = 8/173 (4%)
Query: 2 AALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVH-MPR--MRLSPVT 58
A ++ LA ASP+S P+ SG ++H S F G S+ PR + SP
Sbjct: 3 AVMKPLAAASPVSAPPSPRRSVAGSSGAPCQSLHSS----FRGISLRCRPRKPVHRSPPL 58
Query: 59 RNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI 118
R+S+ + + +A+KP IQFIQGTDE T+PDV+LTKSRDG+NG+AIF F +PSVFDSS E+
Sbjct: 59 RSSRAAAQV-VAMKPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFEFDQPSVFDSSAEL 117
Query: 119 GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
GDITGFYMIDEEG LQ+VDVSAKFVNG+P+R+EAKY+MR+ +WDRFMRFMER
Sbjct: 118 GDITGFYMIDEEGMLQTVDVSAKFVNGKPARVEAKYVMRTAGDWDRFMRFMER 170
>gi|413951360|gb|AFW84009.1| hypothetical protein ZEAMMB73_786886 [Zea mays]
Length = 182
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/179 (56%), Positives = 129/179 (72%), Gaps = 20/179 (11%)
Query: 2 AALRSLALASPISHCWHPQSRSPSLSGI-------VTWAVHGSAQSPFNG-QSVHMP-RM 52
A +++LA+ASP+S R ++G+ ++H QS F+G SV P R
Sbjct: 3 AVMKALAVASPVSARAAQHPRRYHVAGVPSQQHQQQNLSLH--LQSLFHGVSSVQCPGRW 60
Query: 53 RLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF 112
R + V + MA +P IQFIQGTDE TVPDV+LTKSRDG+NG+A+F+F PSVF
Sbjct: 61 RRAQV---------VAMAGRPAIQFIQGTDEQTVPDVRLTKSRDGTNGVAVFAFERPSVF 111
Query: 113 DSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
DSS E+GDITGFYM+D+EG LQSVDVSAKFVNG+P+RIEAKY+MR+P+EWDRFMRFMER
Sbjct: 112 DSSAELGDITGFYMVDDEGVLQSVDVSAKFVNGKPARIEAKYVMRTPQEWDRFMRFMER 170
>gi|195611266|gb|ACG27463.1| photosystem II reaction center W protein [Zea mays]
Length = 180
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/134 (70%), Positives = 114/134 (85%), Gaps = 1/134 (0%)
Query: 39 QSPFNGQSVHMP-RMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDG 97
QSPF+G SV P R R + R +V+ + AV+P IQFIQGTDE T+PDV+LTKSRDG
Sbjct: 35 QSPFHGVSVQCPGRPRRATPRRGPQVAVVVAAAVRPAIQFIQGTDEQTIPDVRLTKSRDG 94
Query: 98 SNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMR 157
+NG+AIF+F +PSVFDSS E+GDITGFYMID+EG LQSVDVSAKFVNG+P+RIEAKY+MR
Sbjct: 95 TNGVAIFTFEQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPARIEAKYVMR 154
Query: 158 SPREWDRFMRFMER 171
+PR+WDRFMRFMER
Sbjct: 155 TPRDWDRFMRFMER 168
>gi|226528942|ref|NP_001151243.1| photosystem II reaction center W protein [Zea mays]
gi|195645280|gb|ACG42108.1| photosystem II reaction center W protein [Zea mays]
gi|224035967|gb|ACN37059.1| unknown [Zea mays]
gi|414878789|tpg|DAA55920.1| TPA: photosystem II reaction center psb28 protein [Zea mays]
Length = 179
Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 109/133 (81%)
Query: 39 QSPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGS 98
QSPF+G SV P R + + AV+P IQFIQGTDE T+PDV+LTKSRDG+
Sbjct: 35 QSPFHGVSVQCPGRPRRATPRRGRQVAVVAAAVRPAIQFIQGTDEQTIPDVRLTKSRDGT 94
Query: 99 NGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRS 158
NG+AIF+F +PSVFDSS E+GDITGFYMID+EG LQSVDVSAKFVNG+P+RIEAKY+MR+
Sbjct: 95 NGVAIFTFEQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPARIEAKYVMRT 154
Query: 159 PREWDRFMRFMER 171
PR+WDRFMRFMER
Sbjct: 155 PRDWDRFMRFMER 167
>gi|18417239|ref|NP_567814.1| photosystem II reaction center PSB28 protein [Arabidopsis thaliana]
gi|75161816|sp|Q8W0Y8.1|PSB28_ARATH RecName: Full=Photosystem II reaction center PSB28 protein,
chloroplastic; AltName: Full=Photosystem II protein
W-like; Flags: Precursor
gi|18087645|gb|AAL58951.1|AF462867_1 AT4g28660/T5F17_110 [Arabidopsis thaliana]
gi|21360421|gb|AAM47326.1| AT4g28660/T5F17_110 [Arabidopsis thaliana]
gi|21592461|gb|AAM64412.1| photosystem II protein W-like [Arabidopsis thaliana]
gi|332660119|gb|AEE85519.1| photosystem II reaction center PSB28 protein [Arabidopsis thaliana]
Length = 183
Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 129/176 (73%), Gaps = 11/176 (6%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIV--TWAVHGSAQSPFNGQSVHMPRMRLSPVT 58
MA +RS+ + ++H R+ SGIV + +V S F G V +PR + P +
Sbjct: 1 MACVRSIGSLTSVNHS----QRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQ--PSS 54
Query: 59 RNS-KVSGP--ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS 115
R + + P ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSS
Sbjct: 55 RTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 114
Query: 116 GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
GE+G+ITG YMIDEEG +QS DV+A+FVNG+P I AK+IMRSP+EWDRFMRFMER
Sbjct: 115 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMER 170
>gi|7269721|emb|CAB81454.1| photosystem II protein W-like [Arabidopsis thaliana]
Length = 224
Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 129/176 (73%), Gaps = 11/176 (6%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIV--TWAVHGSAQSPFNGQSVHMPRMRLSPVT 58
MA +RS+ + ++H R+ SGIV + +V S F G V +PR + P +
Sbjct: 42 MACVRSIGSLTSVNHS----QRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQ--PSS 95
Query: 59 RNS-KVSGP--ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS 115
R + + P ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSS
Sbjct: 96 RTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 155
Query: 116 GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
GE+G+ITG YMIDEEG +QS DV+A+FVNG+P I AK+IMRSP+EWDRFMRFMER
Sbjct: 156 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMER 211
>gi|224070060|ref|XP_002303109.1| predicted protein [Populus trichocarpa]
gi|222844835|gb|EEE82382.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/103 (83%), Positives = 95/103 (92%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMID 128
M VKP IQF+QG DE TVPDV+LTKSRDG+NGMAIF+F +PSVFDSS E+GDITGFYMID
Sbjct: 1 MMVKPAIQFVQGADEQTVPDVRLTKSRDGTNGMAIFTFDQPSVFDSSAEVGDITGFYMID 60
Query: 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EEG LQSVDV+AKFVNG+P RIEAKYIMR+PREWDRFMRFMER
Sbjct: 61 EEGILQSVDVNAKFVNGKPERIEAKYIMRTPREWDRFMRFMER 103
>gi|116782491|gb|ABK22527.1| unknown [Picea sitchensis]
gi|116791920|gb|ABK26159.1| unknown [Picea sitchensis]
gi|224284580|gb|ACN40023.1| unknown [Picea sitchensis]
Length = 202
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/132 (71%), Positives = 108/132 (81%), Gaps = 1/132 (0%)
Query: 40 SPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSN 99
S F+GQ +H+P L R S+ S P+TM KP IQFIQGT+E ++PDVKLTKSRDG+
Sbjct: 60 STFSGQRLHLP-ASLWVSARGSRKSIPVTMMSKPVIQFIQGTNEQSIPDVKLTKSRDGTI 118
Query: 100 GMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSP 159
GMA FSF +PSVFDSS E+GDITG YMIDEEG LQSVDV+AKFVNG+PS IEA+YIMRSP
Sbjct: 119 GMATFSFDQPSVFDSSRELGDITGLYMIDEEGVLQSVDVNAKFVNGKPSTIEARYIMRSP 178
Query: 160 REWDRFMRFMER 171
EWDRFMRFMER
Sbjct: 179 PEWDRFMRFMER 190
>gi|297803208|ref|XP_002869488.1| photosystem II reaction centre W family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315324|gb|EFH45747.1| photosystem II reaction centre W family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 183
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 126/175 (72%), Gaps = 9/175 (5%)
Query: 1 MAALRSLALASPISHCWHPQSRSP-SLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTR 59
MA +RS+ + ++H RS LS + GS+ F G V + +R P +R
Sbjct: 1 MACVRSIGSLTSVTHSPRNVPRSGIVLSSCSVLPIKGSS---FTGSPVSL--LRAQPSSR 55
Query: 60 NS---KVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSG 116
+ + IT+ VKPT+QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSSG
Sbjct: 56 TALRPRKPVSITLMVKPTLQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSG 115
Query: 117 EIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
E+G+ITG YMIDEEG +QS DV+A+FVNG+P I AK+IMRSP+EWDRFMRFMER
Sbjct: 116 EVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMER 170
>gi|334186999|ref|NP_001190860.1| photosystem II reaction center PSB28 protein [Arabidopsis thaliana]
gi|332660120|gb|AEE85520.1| photosystem II reaction center PSB28 protein [Arabidopsis thaliana]
Length = 198
Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 134/187 (71%), Gaps = 18/187 (9%)
Query: 1 MAALRSLALASPISHCWH--PQS---RSPSLS------GIV--TWAVHGSAQSPFNGQSV 47
MA +RS+ + ++H P+S ++P+ + GIV + +V S F G V
Sbjct: 1 MACVRSIGSLTSVNHSQRNVPRSGTRKNPNFALLIRRIGIVLSSCSVLPIKSSSFTGSPV 60
Query: 48 HMPRMRLSPVTRNS-KVSGP--ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIF 104
+PR + P +R + + P ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+F
Sbjct: 61 SLPRAQ--PSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALF 118
Query: 105 SFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDR 164
SF +PSVFDSSGE+G+ITG YMIDEEG +QS DV+A+FVNG+P I AK+IMRSP+EWDR
Sbjct: 119 SFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDR 178
Query: 165 FMRFMER 171
FMRFMER
Sbjct: 179 FMRFMER 185
>gi|326503710|dbj|BAJ86361.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 182
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 129/174 (74%), Gaps = 10/174 (5%)
Query: 4 LRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQ--SPFNGQSVHMPRMRLSPVTRNS 61
+ +LA+ASP PQ R L+ +W ++Q + F+G +V + + LSP +S
Sbjct: 1 MEALAVASPA--LTRPQPRRRCLAA-GSWCQRRTSQLHTSFSGVTVQLHKP-LSPTATSS 56
Query: 62 KVSGPIT----MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE 117
+ S M +P+IQFIQGTDE T+PDV+LTKSRDGSNG+AIF+F +PSVFDSS E
Sbjct: 57 RRSSSSVVAVAMLSRPSIQFIQGTDEQTIPDVRLTKSRDGSNGVAIFTFEQPSVFDSSAE 116
Query: 118 IGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+GDITGFYM+DEEGTL SVDVSAKFVNG+P+ +EAKY+MR+PR+WDRFMRFMER
Sbjct: 117 LGDITGFYMVDEEGTLSSVDVSAKFVNGKPAAVEAKYVMRTPRDWDRFMRFMER 170
>gi|413951359|gb|AFW84008.1| hypothetical protein ZEAMMB73_786886 [Zea mays]
Length = 115
Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 82/103 (79%), Positives = 96/103 (93%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMID 128
MA +P IQFIQGTDE TVPDV+LTKSRDG+NG+A+F+F PSVFDSS E+GDITGFYM+D
Sbjct: 1 MAGRPAIQFIQGTDEQTVPDVRLTKSRDGTNGVAVFAFERPSVFDSSAELGDITGFYMVD 60
Query: 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+EG LQSVDVSAKFVNG+P+RIEAKY+MR+P+EWDRFMRFMER
Sbjct: 61 DEGVLQSVDVSAKFVNGKPARIEAKYVMRTPQEWDRFMRFMER 103
>gi|414878780|tpg|DAA55911.1| TPA: hypothetical protein ZEAMMB73_880653 [Zea mays]
gi|414878783|tpg|DAA55914.1| TPA: hypothetical protein ZEAMMB73_271109 [Zea mays]
Length = 155
Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/99 (81%), Positives = 94/99 (94%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGT 132
P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDITGFYMID+EG
Sbjct: 45 PAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEQPSVFDSSAELGDITGFYMIDDEGV 104
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
LQSVDVSAKFVNG+P+RIEAKY+MR+PR+WDRFMRFMER
Sbjct: 105 LQSVDVSAKFVNGKPARIEAKYVMRTPRDWDRFMRFMER 143
>gi|302766731|ref|XP_002966786.1| hypothetical protein SELMODRAFT_85520 [Selaginella moellendorffii]
gi|302792389|ref|XP_002977960.1| hypothetical protein SELMODRAFT_108203 [Selaginella moellendorffii]
gi|300153981|gb|EFJ20617.1| hypothetical protein SELMODRAFT_108203 [Selaginella moellendorffii]
gi|300166206|gb|EFJ32813.1| hypothetical protein SELMODRAFT_85520 [Selaginella moellendorffii]
Length = 114
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 88/101 (87%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
VKP+IQFI+G DEL VPD+ LT+S+D NG+A F F +PSVFDSS E+G+ITG YMID+E
Sbjct: 2 VKPSIQFIRGVDELVVPDISLTRSQDQRNGVATFVFDQPSVFDSSREMGEITGIYMIDDE 61
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
G LQSVDVSAKFVNG+P++IEAKY+MR+ EWDRFMRFMER
Sbjct: 62 GVLQSVDVSAKFVNGKPAKIEAKYVMRNIGEWDRFMRFMER 102
>gi|168059549|ref|XP_001781764.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666766|gb|EDQ53412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 115
Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/103 (68%), Positives = 89/103 (86%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMID 128
M VKP +QFI+G DE +VP+++LT+S DG+NG AIF F +PSVFDSS E+GDITG YM+D
Sbjct: 1 MQVKPVLQFIRGVDERSVPEIRLTRSPDGTNGKAIFVFDQPSVFDSSRELGDITGLYMLD 60
Query: 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EEG L +VDVSAKF+NG+PS+IE++YIMR+ EWDRFMRFMER
Sbjct: 61 EEGVLSTVDVSAKFLNGKPSKIESQYIMRNTTEWDRFMRFMER 103
>gi|115442119|ref|NP_001045339.1| Os01g0938100 [Oryza sativa Japonica Group]
gi|113534870|dbj|BAF07253.1| Os01g0938100, partial [Oryza sativa Japonica Group]
Length = 97
Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 81/85 (95%)
Query: 87 PDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGR 146
PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDITGFYMID+EG LQSVDVSAKFVNG+
Sbjct: 1 PDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGK 60
Query: 147 PSRIEAKYIMRSPREWDRFMRFMER 171
P+ IEAKY+MR+PREWDRFMRFMER
Sbjct: 61 PALIEAKYVMRTPREWDRFMRFMER 85
>gi|168026840|ref|XP_001765939.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682845|gb|EDQ69260.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 115
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/103 (66%), Positives = 89/103 (86%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMID 128
M VKP IQFI+G DE VP+++LT+S +G+NG AIF F +PSVFD+S E+GDITG Y++D
Sbjct: 1 MQVKPVIQFIRGVDERVVPEIRLTRSPNGTNGKAIFVFDQPSVFDASRELGDITGLYLVD 60
Query: 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EEGTL +V+VSAKF+NG+PS+IE++Y+MR+ EWDRFMRFMER
Sbjct: 61 EEGTLSTVEVSAKFLNGKPSKIESQYVMRNTTEWDRFMRFMER 103
>gi|384253052|gb|EIE26527.1| photosystem II reaction cent [Coccomyxa subellipsoidea C-169]
Length = 141
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
Query: 46 SVHMPRMRLSPVTRNSKVSGPIT-MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIF 104
S + + S TR + S T +++ +IQFI+G +E TVPDV+LT++RDGS+G A F
Sbjct: 2 SAKQVKQQSSSSTRWCRASASATILSMASSIQFIRGVNEPTVPDVRLTRARDGSSGTASF 61
Query: 105 SFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDR 164
F PSVF++S E+GDITG Y++D+EGTL +VDV AKF+NG+P RIEAKY+MRS EWDR
Sbjct: 62 VFKSPSVFEASSELGDITGLYLVDDEGTLTTVDVQAKFLNGKPDRIEAKYVMRSGFEWDR 121
Query: 165 FMRFMER 171
FMRFMER
Sbjct: 122 FMRFMER 128
>gi|19880501|gb|AAM00366.1| saline responsive OSSRII protein [Oryza sativa]
Length = 98
Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 80/86 (93%)
Query: 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNG 145
+PDV+LTKS DG+ G+AIF+F +PSVFDSS ++GDITGFYMID+EG LQSVDVSAKFVNG
Sbjct: 1 LPDVRLTKSGDGTKGVAIFTFDQPSVFDSSAKLGDITGFYMIDDEGVLQSVDVSAKFVNG 60
Query: 146 RPSRIEAKYIMRSPREWDRFMRFMER 171
+P+ IEAKY+MR+PREWDRFMRFMER
Sbjct: 61 KPALIEAKYVMRTPREWDRFMRFMER 86
>gi|361066809|gb|AEW07716.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149062|gb|AFG56398.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149064|gb|AFG56399.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149066|gb|AFG56400.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149068|gb|AFG56401.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149070|gb|AFG56402.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149072|gb|AFG56403.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149074|gb|AFG56404.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149076|gb|AFG56405.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149078|gb|AFG56406.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149080|gb|AFG56407.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149082|gb|AFG56408.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149084|gb|AFG56409.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149086|gb|AFG56410.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149088|gb|AFG56411.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149090|gb|AFG56412.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149092|gb|AFG56413.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149094|gb|AFG56414.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
gi|383149096|gb|AFG56415.1| Pinus taeda anonymous locus 0_9527_01 genomic sequence
Length = 85
Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 80/85 (94%)
Query: 80 GTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVS 139
GTDE +VPDVKL+KSRDG++G+AIFSF +PSVFDSS E+GDITG YMIDEEG LQSVDVS
Sbjct: 1 GTDEQSVPDVKLSKSRDGTSGLAIFSFDQPSVFDSSRELGDITGLYMIDEEGVLQSVDVS 60
Query: 140 AKFVNGRPSRIEAKYIMRSPREWDR 164
AKFVNG+PSRIEAKYIMR+P+EWDR
Sbjct: 61 AKFVNGKPSRIEAKYIMRNPQEWDR 85
>gi|307110368|gb|EFN58604.1| hypothetical protein CHLNCDRAFT_19726 [Chlorella variabilis]
Length = 114
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 83/98 (84%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+++FI+G +E T+PDVKLT+SRDG++G A F F P++F++S E+GDITG YM D+EGT+
Sbjct: 4 SMEFIKGIEEPTIPDVKLTRSRDGASGTATFVFQNPAIFEASSELGDITGLYMNDDEGTI 63
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
Q+VDV AKFVNGRP +IE KY+MRS EWDRFMRFMER
Sbjct: 64 QTVDVQAKFVNGRPDKIEVKYVMRSSFEWDRFMRFMER 101
>gi|302829687|ref|XP_002946410.1| hypothetical protein VOLCADRAFT_103002 [Volvox carteri f.
nagariensis]
gi|300268156|gb|EFJ52337.1| hypothetical protein VOLCADRAFT_103002 [Volvox carteri f.
nagariensis]
Length = 1237
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 79/97 (81%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
+QFI+G +E TVP+V+LT+SR G+NG A+F F PS+F +SGE+GDITG +M+D+EG L
Sbjct: 1128 LQFIKGVNEPTVPEVRLTRSRTGANGTAMFVFENPSIFQASGEMGDITGLFMVDDEGVLS 1187
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ DV AKF+NG+P IEAKY MRS EWDRFMRFM+R
Sbjct: 1188 TTDVKAKFINGKPQAIEAKYQMRSQFEWDRFMRFMDR 1224
>gi|255079050|ref|XP_002503105.1| photosystem II 13kD protein, chloroplast precursor [Micromonas sp.
RCC299]
gi|226518371|gb|ACO64363.1| photosystem II 13kD protein, chloroplast precursor [Micromonas sp.
RCC299]
Length = 118
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 86/105 (81%)
Query: 67 ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYM 126
+T+A +IQF++GT+E +VPDVKLT+S+DG+NG A F FSEP VF+++ G+ITG ++
Sbjct: 1 MTVAADTSIQFVKGTNETSVPDVKLTRSKDGTNGTAFFWFSEPDVFEATELEGEITGMFL 60
Query: 127 IDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
ID+EG L +VDV+AKF+NG+P IEA Y+M+S EW+RFMRFMER
Sbjct: 61 IDQEGELSTVDVNAKFLNGKPQGIEATYVMKSTNEWNRFMRFMER 105
>gi|159464615|ref|XP_001690537.1| photosystem II subunit 28 [Chlamydomonas reinhardtii]
gi|158280037|gb|EDP05796.1| photosystem II subunit 28 [Chlamydomonas reinhardtii]
Length = 144
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 80/98 (81%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
++QFI+G E TVP+V+LT+SR G+NG AIF F PS+F +SGE+GDITG +M+D+EGTL
Sbjct: 36 SLQFIKGVAEPTVPEVRLTRSRTGANGTAIFVFENPSIFQASGEMGDITGLFMVDDEGTL 95
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ DV AKF+NG+P IEAK+ MRS EWDRFMRFM+R
Sbjct: 96 STTDVKAKFINGKPQAIEAKFNMRSQFEWDRFMRFMDR 133
>gi|145354881|ref|XP_001421703.1| psbW, PSII-W, photosystem II polypeptide [Ostreococcus lucimarinus
CCE9901]
gi|144581941|gb|ABO99996.1| psbW, PSII-W, photosystem II polypeptide [Ostreococcus lucimarinus
CCE9901]
Length = 129
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 89/115 (77%), Gaps = 2/115 (1%)
Query: 57 VTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSG 116
V R ++ S +T A +IQF++G +E +VP+VKLT+S+DGSNG A F F+EP VF++
Sbjct: 5 VARATRASRAVTRAGTTSIQFVKGQNETSVPEVKLTRSKDGSNGTAFFIFAEPDVFENG- 63
Query: 117 EIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
GDITG ++ DEEG + +VDV+AKF+NG+PS IEA+Y+M++ R+WDRFMRFM R
Sbjct: 64 -QGDITGMFLNDEEGEMSTVDVNAKFINGKPSGIEARYVMKTERDWDRFMRFMAR 117
>gi|378824580|ref|YP_005089750.1| psb28 gene product (chloroplast) [Synedra acus]
gi|371572779|gb|AEX37875.1| photosystem II protein 28 (chloroplast) [Synedra acus]
Length = 115
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 78/98 (79%), Gaps = 1/98 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTL 133
IQFI+G DE +PDV+LT+SRDGS G A F F P++ D S+ G+ITG Y+IDEEGTL
Sbjct: 5 IQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTARQGEITGMYLIDEEGTL 64
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
++ DV+A+FVNG+P IE+ YIM+SP +WDRFMRFMER
Sbjct: 65 ETRDVNARFVNGKPEAIESVYIMKSPEDWDRFMRFMER 102
>gi|330850890|ref|YP_004376640.1| photosystem II subunit [Fistulifera sp. JPCC DA0580]
gi|328835710|dbj|BAK19006.1| photosystem II subunit [Fistulifera sp. JPCC DA0580]
Length = 115
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ TIQFI+G DE +PDV+LT+S DGS G A F F P++ D ++ + G+ITG Y+IDE
Sbjct: 1 MEATIQFIKGLDEKVLPDVRLTRSVDGSTGTATFRFKNPNILDKNTAKEGEITGMYLIDE 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EGTL++ DV+A+FVNGRP IE+ YIM+SP WDRFMRFMER
Sbjct: 61 EGTLETRDVNARFVNGRPEAIESIYIMKSPEAWDRFMRFMER 102
>gi|414878816|tpg|DAA55947.1| TPA: hypothetical protein ZEAMMB73_578027 [Zea mays]
Length = 260
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 79/111 (71%), Gaps = 11/111 (9%)
Query: 70 AVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDE 129
A + IQFIQG DE T+PDV+LTKSRD +NG+AIF+F +PSVFDSS E+G ITGFYMID+
Sbjct: 142 AARQAIQFIQGMDEQTIPDVRLTKSRDSTNGVAIFTFEQPSVFDSSAELGAITGFYMIDD 201
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALLDS 180
EG LQSVDVSAKFVNG+P PREW+ + + V + DS
Sbjct: 202 EGVLQSVDVSAKFVNGKP-----------PREWEPIPQLAHGRTVNSRSDS 241
>gi|11467474|ref|NP_043620.1| photosystem II protein W [Odontella sinensis]
gi|1346875|sp|P49508.1|PSB28_ODOSI RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|1185169|emb|CAA91652.1| PSII, protein W, 13 kDa [Odontella sinensis]
Length = 115
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ IQFI+G DE +PDV+LT+SRDGS G A F F P++ D S+ + G+ITG Y+ID+
Sbjct: 1 MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EGTL++ DV+A+F+NG+P IE+ YIM+SP WDRFMRFMER
Sbjct: 61 EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMER 102
>gi|308812414|ref|XP_003083514.1| Photosystem II 13kD Protein, chloroplast precursor (IC)
[Ostreococcus tauri]
gi|122064925|sp|Q00UI6.1|PSB28_OSTTA RecName: Full=Photosystem II reaction center psb28 protein,
chloroplastic; AltName: Full=Photosystem II protein
W-like; Flags: Precursor
gi|116055395|emb|CAL58063.1| Photosystem II 13kD Protein, chloroplast precursor (IC)
[Ostreococcus tauri]
Length = 147
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 89/127 (70%), Gaps = 5/127 (3%)
Query: 45 QSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIF 104
+S + R S R S V + +IQF++G +E VP+V+LT+S+DGSNG A F
Sbjct: 14 RSFNASTKRFSKSARRSVV---VRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFF 70
Query: 105 SFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDR 164
FS+P VF++ GDITG ++ DEEG + +VDV+AKFVNG+P+ IEA+Y+M++ +W+R
Sbjct: 71 IFSDPDVFENGQ--GDITGMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNR 128
Query: 165 FMRFMER 171
FMRFMER
Sbjct: 129 FMRFMER 135
>gi|217075366|gb|ACJ86043.1| unknown [Medicago truncatula]
Length = 83
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/71 (84%), Positives = 67/71 (94%)
Query: 101 MAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPR 160
MAIF F +PSVFDSSGE+GDITGFYMIDEEG LQSVDV+AKFVNG+PS IEAKYIMR+PR
Sbjct: 1 MAIFRFDQPSVFDSSGEVGDITGFYMIDEEGVLQSVDVNAKFVNGKPSGIEAKYIMRTPR 60
Query: 161 EWDRFMRFMER 171
+WDRFMRF+ER
Sbjct: 61 DWDRFMRFVER 71
>gi|424513642|emb|CCO66264.1| photosystem II reaction center protein Psb28 [Bathycoccus prasinos]
Length = 158
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TI F++ + E +VPDVKLTKSRDG++G A F+F P VF+S+ GDITG Y+ DEEG +
Sbjct: 50 TISFVRDSVETSVPDVKLTKSRDGTSGTAFFTFENPDVFESA--TGDITGMYLSDEEGEM 107
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+VDV+AKFVNG+P IEA+YIMRS +EW+RFMRFM R
Sbjct: 108 TTVDVNAKFVNGKPKCIEARYIMRSSQEWERFMRFMTR 145
>gi|299830595|ref|YP_003735043.1| photosystem II subunit [Durinskia baltica]
gi|297384959|gb|ADI40258.1| photosystem II subunit [Durinskia baltica]
Length = 115
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 78/102 (76%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ IQFI+G DE +PDV+LT+SRDGS G A F F P++ D S+ + G+ITG Y+IDE
Sbjct: 1 MQAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDE 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EG L++ DVSA F NG+P IE+ YIM++P+ WDRFMRFMER
Sbjct: 61 EGILETRDVSAHFSNGKPETIESIYIMKTPKAWDRFMRFMER 102
>gi|118411055|ref|YP_874450.1| photosystem II subunit [Phaeodactylum tricornutum]
gi|125964827|sp|A0T0H5.1|PSB28_PHATC RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|116739802|gb|ABK20673.1| photosystem II subunit [Phaeodactylum tricornutum]
Length = 115
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 79/102 (77%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ IQFI+G DE +PDV+LT+S+DGS G A F F P++ D ++ + G+ITG Y+IDE
Sbjct: 1 MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EG L++ DV+A+FVNG+P IE+ YIM+SP WDRFMRFMER
Sbjct: 61 EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMER 102
>gi|303283662|ref|XP_003061122.1| photosystem II 13kD protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226457473|gb|EEH54772.1| photosystem II 13kD protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 151
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 81/111 (72%), Gaps = 3/111 (2%)
Query: 61 SKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD 120
++V P+ K +IQFI+G +E T PDV+LT+S+DG+NG A F F E +F++ GD
Sbjct: 32 ARVVAPV---AKTSIQFIKGLEETTQPDVRLTRSKDGTNGTAFFIFKESGIFEAPELPGD 88
Query: 121 ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
ITG ++ DEEG + +VDV KF NG+P +IEA+Y+M+S EW+RFMRFMER
Sbjct: 89 ITGMFLTDEEGEISTVDVKCKFSNGKPVQIEAQYVMKSTNEWNRFMRFMER 139
>gi|11467617|ref|NP_050669.1| photosystem II protein W [Guillardia theta]
gi|6093825|sp|O78418.1|PSB28_GUITH RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|3602942|gb|AAC35603.1| PSII protein W (chloroplast) [Guillardia theta]
Length = 116
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 78/104 (75%), Gaps = 4/104 (3%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMI 127
MAV IQFIQG +E +PDV+LT+SRDGS G A F F+ P V ++ + G+ITG Y+I
Sbjct: 1 MAV---IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLI 57
Query: 128 DEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
DEEG L + DV+A+FVNG+P IEA YIM+S +WDRFMRFMER
Sbjct: 58 DEEGQLVTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMER 101
>gi|299830413|ref|YP_003734628.1| photosystem II protein W [Kryptoperidinium foliaceum]
gi|297385115|gb|ADI40413.1| photosystem II protein W [Kryptoperidinium foliaceum]
Length = 115
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 78/102 (76%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ IQFI+G DE +PDV+LT+SRDGS G A F F P++ D ++ + G+ITG Y+IDE
Sbjct: 1 MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFCFKNPNILDKNTAKKGEITGMYLIDE 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EG L++ DV+A F NG+P IE+ YIM+SPR WDRFMRFMER
Sbjct: 61 EGILETRDVNAHFRNGKPEIIESIYIMKSPRAWDRFMRFMER 102
>gi|118411187|ref|YP_874581.1| photosystem II subunit [Thalassiosira pseudonana]
gi|125964829|sp|A0T0W9.1|PSB28_THAPS RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|116739934|gb|ABK20804.1| photosystem II subunit [Thalassiosira pseudonana]
Length = 114
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTL 133
IQFI+G DE +PDV+LT+SRDGS G A F F ++ + S + G+ITG YMIDEEG L
Sbjct: 5 IQFIKGIDEKVLPDVRLTRSRDGSTGTATFLFKNANLINKSLALNGEITGMYMIDEEGIL 64
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
++ DVSA+FVNG+P +E+ YIM+SP WDRFMRFMER
Sbjct: 65 ETRDVSARFVNGKPQAVESIYIMKSPEAWDRFMRFMER 102
>gi|11465813|ref|NP_053957.1| photosystem II protein W [Porphyra purpurea]
gi|1709848|sp|P51347.1|PSB28_PORPU RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|1276813|gb|AAC08233.1| Photosystem II protein W (chloroplast) [Porphyra purpurea]
gi|378787384|gb|AFC40015.1| photosystem II protein W [Porphyra umbilicalis]
Length = 115
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGT 132
TIQFIQG +E VPDV+LT+SRDGS G A F F+ P + D+S + G+ITG Y++D EG
Sbjct: 3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQ 62
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + DV+AKF+NG+P IEA ++++SP +WDRFMRFMER
Sbjct: 63 IITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMER 101
>gi|90994538|ref|YP_537028.1| photosystem II protein W [Pyropia yezoensis]
gi|122064926|sp|Q1XDE0.1|PSB28_PORYE RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|90819102|dbj|BAE92471.1| Photosystem II protein W [Pyropia yezoensis]
Length = 115
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGT 132
TIQFIQG +E VPDV+LT+SRDGS G A F F+ P + D+S + G+ITG Y++D EG
Sbjct: 3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQ 62
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + DV+AKF+NG+P IEA ++++SP +WDRFMRFMER
Sbjct: 63 IITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMER 101
>gi|224002100|ref|XP_002290722.1| nuclear copy of photosystem II protein psbW [Thalassiosira
pseudonana CCMP1335]
gi|220974144|gb|EED92474.1| nuclear copy of photosystem II protein psbW, partial [Thalassiosira
pseudonana CCMP1335]
Length = 113
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTL 133
IQF++G +E VP +KLT++RDGS+G+A F+F+ P+VFD S+ G+ITG +++DEEG +
Sbjct: 3 IQFVKGLEEKVVPGIKLTRARDGSSGIATFNFNNPNVFDASTSSQGEITGMFLVDEEGEM 62
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
++ DV+AKF+NG+P IE+ +M+SP EWDRFMRFMER
Sbjct: 63 RTSDVNAKFLNGKPQSIESVLVMQSPEEWDRFMRFMER 100
>gi|11467376|ref|NP_043233.1| photosystem II protein W [Cyanophora paradoxa]
gi|1346874|sp|P48264.1|PSB28_CYAPA RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|1016177|gb|AAA81264.1| subunit of the water oxidation complex on the lumenal surface of
the photosystem II reaction center complex [Cyanophora
paradoxa]
Length = 112
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQFIQG DE +PDVKL++S+DG+NG+A F F +P+VFD G+ITG Y+IDEEG L
Sbjct: 4 IQFIQGVDEEAIPDVKLSRSQDGANGIAKFYFDKPTVFDVYQ--GEITGLYLIDEEGELS 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ V AKF+NG+P IEA YIM + EW+RF+RFMER
Sbjct: 62 TRTVYAKFINGKPQSIEASYIMNNREEWERFIRFMER 98
>gi|51209899|ref|YP_063563.1| photosystem II protein W [Gracilaria tenuistipitata var. liui]
gi|75120510|sp|Q6B8Z7.1|PSB28_GRATL RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|50657653|gb|AAT79638.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata
var. liui]
Length = 114
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 4/104 (3%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE-IGDITGFYMI 127
MAV IQFI+G +E V DV LT+SRDGS G A F F+ P + S E GDITG Y+
Sbjct: 1 MAV---IQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILKSGMEDKGDITGMYLK 57
Query: 128 DEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
D+EG L + DVSAKF+NG+P +EA YI++SP+EWDRFMRFME+
Sbjct: 58 DDEGELMTRDVSAKFINGKPQAVEAIYIIKSPQEWDRFMRFMEK 101
>gi|397642454|gb|EJK75243.1| hypothetical protein THAOC_03038 [Thalassiosira oceanica]
Length = 271
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMI 127
+ + IQF++G +E +PD+KL+++RDGS+G+A F+F+ P+VFD S+ G+ITG ++
Sbjct: 36 LNAEAEIQFVRGLEEKVIPDIKLSRARDGSSGIATFNFANPNVFDASTASEGEITGMFLA 95
Query: 128 DEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
D EG + + DV+A+F+NG+P IEA +++SP EWDRFMRFME+
Sbjct: 96 DGEGEMSTTDVNARFMNGKPQSIEATLVLKSPGEWDRFMRFMEK 139
>gi|397619772|gb|EJK65399.1| hypothetical protein THAOC_13743, partial [Thalassiosira oceanica]
Length = 156
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 78/98 (79%), Gaps = 1/98 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTL 133
IQF++G +E +PD+KL+++RDGS+G+A F+F+ P+VFD S+ G+ITG ++ D EG +
Sbjct: 47 IQFVRGLEEKVIPDIKLSRARDGSSGIATFNFANPNVFDASTASEGEITGMFLADGEGEM 106
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ DV+A+F+NG+P IEA +++SP EWDRFMRFME+
Sbjct: 107 STTDVNARFMNGKPQSIEATLVLKSPGEWDRFMRFMEK 144
>gi|56752420|ref|YP_173121.1| photosystem II reaction center protein Psb28 [Synechococcus
elongatus PCC 6301]
gi|81300488|ref|YP_400696.1| photosystem II reaction center protein Psb28 [Synechococcus
elongatus PCC 7942]
gi|81561262|sp|Q5MZB9.1|PSB28_SYNP6 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|122064931|sp|Q31ML0.1|PSB28_SYNE7 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|56687379|dbj|BAD80601.1| photosystem II reaction center 13 kDa protein [Synechococcus
elongatus PCC 6301]
gi|81169369|gb|ABB57709.1| photosystem II reaction center W protein [Synechococcus elongatus
PCC 7942]
Length = 112
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 73/98 (74%), Gaps = 3/98 (3%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTL 133
IQF +G DE VPDV+LT+SRDG NG A F F EP GE+ DITG Y++D+EG L
Sbjct: 5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGEL 62
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKF+NG+P+ +EA Y+MRSP EWDRFMRFM+R
Sbjct: 63 ATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFMQR 100
>gi|290760288|gb|ADD54637.1| photosystem II W protein [Galdieria sulphuraria]
Length = 116
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGT 132
+IQFI G DE +PD+KLT+S+DG G A F F+ P+VF +S + DITG Y+IDEEG
Sbjct: 3 SIQFITGLDEKEIPDIKLTRSKDGKTGTATFIFTNPNVFQKTSKDQADITGMYLIDEEGE 62
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +V+AKFVNG+P +IEA YI+++ EWDRFMRFM+R
Sbjct: 63 MVTREVNAKFVNGKPYKIEALYIIKNNDEWDRFMRFMDR 101
>gi|149072107|ref|YP_001293482.1| photosystem II reaction center protein W [Rhodomonas salina]
gi|134303058|gb|ABO70862.1| photosystem II reaction center protein W [Rhodomonas salina]
Length = 116
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 77/104 (74%), Gaps = 4/104 (3%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDS-SGEIGDITGFYMI 127
MAV IQFIQG +E +PDV+LT+SRDGS G A F F+ P V ++ + G ITG Y+I
Sbjct: 1 MAV---IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPQVLEAQTTNKGTITGMYLI 57
Query: 128 DEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
DEEG + + DV+A+FVNG+P IEA +IM+S +WDRFMRFMER
Sbjct: 58 DEEGQIVTRDVNARFVNGKPQGIEAVHIMQSKEDWDRFMRFMER 101
>gi|428209079|ref|YP_007093432.1| photosystem II reaction center protein Psb28 [Chroococcidiopsis
thermalis PCC 7203]
gi|428011000|gb|AFY89563.1| photosystem II reaction center protein Psb28 [Chroococcidiopsis
thermalis PCC 7203]
Length = 111
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E TVPDV+LT+SRDGSNG A F F P + S G ++TG Y+IDEEG L
Sbjct: 4 IQFSKGVTEETVPDVRLTRSRDGSNGTATFYFQNPQIL-SEGSNEEVTGMYLIDEEGELV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P IEA Y+M+S EWDRFMRFMER
Sbjct: 63 TREVKGKFINGKPEAIEAIYLMKSTEEWDRFMRFMER 99
>gi|22298036|ref|NP_681283.1| photosystem II reaction center protein Psb28 [Thermosynechococcus
elongatus BP-1]
gi|81743716|sp|Q8DLJ8.1|PSB28_THEEB RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|22294214|dbj|BAC08045.1| photosystem II reaction center W protein [Thermosynechococcus
elongatus BP-1]
Length = 116
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMID 128
M IQFI+G +E VPDV+LT++RDGS+G A+F F P + G + ++TG YM+D
Sbjct: 1 MGAMAEIQFIRGINEEVVPDVRLTRARDGSSGQAMFYFDNPKIV-QEGNL-EVTGMYMVD 58
Query: 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EEG + + DV+AKF+NG+P IEA Y MRSP+EWDRF+RFM+R
Sbjct: 59 EEGEIVTRDVNAKFINGQPVAIEATYTMRSPQEWDRFIRFMDR 101
>gi|434390847|ref|YP_007125794.1| Photosystem II reaction center Psb28 protein [Gloeocapsa sp. PCC
7428]
gi|428262688|gb|AFZ28634.1| Photosystem II reaction center Psb28 protein [Gloeocapsa sp. PCC
7428]
Length = 111
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPDV+LT+SRDGSNG A F F P SS +ITG YMIDEEGT+
Sbjct: 4 IQFFRGVDEEVVPDVRLTRSRDGSNGTATFYFQNPQAL-SSEATEEITGMYMIDEEGTIT 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNG+P +E Y+M SP EWDRF+RFM+R
Sbjct: 63 TREVKGKFVNGKPEALEVFYLMNSPDEWDRFLRFMQR 99
>gi|428777607|ref|YP_007169394.1| photosystem II reaction center protein Psb28 [Halothece sp. PCC
7418]
gi|428691886|gb|AFZ45180.1| photosystem II reaction center protein Psb28 [Halothece sp. PCC
7418]
Length = 112
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TIQF +G DE T+PDV+LT+SRDG++G A F F +P V D+ +ITG Y+ID+EG +
Sbjct: 4 TIQFSRGIDEETIPDVRLTRSRDGNSGTATFRFEQPKVLDAES-TQEITGMYLIDDEGII 62
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ DV KFVNG+P+ +EA + M+S EWDRFMRFMER
Sbjct: 63 STQDVKGKFVNGQPTALEAVHYMKSEEEWDRFMRFMER 100
>gi|428771393|ref|YP_007163183.1| Photosystem II reaction center Psb28 protein [Cyanobacterium
aponinum PCC 10605]
gi|428685672|gb|AFZ55139.1| Photosystem II reaction center Psb28 protein [Cyanobacterium
aponinum PCC 10605]
Length = 111
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
I+F QG E ++PDV+LT+SRDGSNG A F F + DS G ++TG Y+IDEEG L
Sbjct: 4 IEFAQGVVEESIPDVRLTRSRDGSNGTATFRFESTKILDS-GNTQEVTGMYLIDEEGELV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNG P+ IEA Y++++P EWDRFMRFMER
Sbjct: 63 TREVKCKFVNGEPTAIEAIYVIKNPEEWDRFMRFMER 99
>gi|254416796|ref|ZP_05030545.1| photosystem II reaction center protein Psb28 [Coleofasciculus
chthonoplastes PCC 7420]
gi|196176342|gb|EDX71357.1| photosystem II reaction center protein Psb28 [Coleofasciculus
chthonoplastes PCC 7420]
Length = 116
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 72/98 (73%), Gaps = 3/98 (3%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTL 133
IQFI+G DE VPDV+LT+SRDGSNG A F F P + + GE +ITG Y++DEEG L
Sbjct: 9 IQFIKGIDEEVVPDVRLTRSRDGSNGTATFYFDNPKALNGNYGE--EITGIYLMDEEGEL 66
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
S +V KFVNG+P+ +EA IM+S EWDRFMRFMER
Sbjct: 67 VSREVKGKFVNGQPTALEAIVIMKSQEEWDRFMRFMER 104
>gi|189095323|ref|YP_001936336.1| photosystem II protein W [Heterosigma akashiwo]
gi|157694666|gb|ABV65942.1| photosystem II protein psb28 [Heterosigma akashiwo]
gi|157777897|gb|ABV70083.1| photosystem II protein psb28 [Heterosigma akashiwo]
Length = 119
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDE 129
+K IQFI+G DE +P++KLT+SRDGS G A F F++P + D + E G+ITG Y+IDE
Sbjct: 1 MKAKIQFIKGIDEEVIPNIKLTRSRDGSTGTATFLFTQPMILDKTMSEQGEITGMYLIDE 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EG + +V+A+F NG P IEA +IM++ WDRFMRFMER
Sbjct: 61 EGEQVTREVNARFRNGNPETIEAIFIMKNRESWDRFMRFMER 102
>gi|30468121|ref|NP_849008.1| photosystem II protein W [Cyanidioschyzon merolae strain 10D]
gi|75272356|sp|Q85G21.1|PSB28_CYAME RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|30409221|dbj|BAC76170.1| photosystem II protein W (chloroplast) [Cyanidioschyzon merolae
strain 10D]
Length = 109
Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 70/98 (71%), Gaps = 3/98 (3%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQFIQG DE +P V+LT+SRDG G A+F F +P + GEI TG YMIDEEG +
Sbjct: 3 SIQFIQGVDEDIIPTVRLTRSRDGQTGTAVFRFVQPKLLQQQGEI---TGMYMIDEEGEI 59
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKFVNG+P IEA Y+M++ + W+RFMRFM R
Sbjct: 60 VTREVQAKFVNGQPQIIEALYVMKNAQAWERFMRFMNR 97
>gi|428780519|ref|YP_007172305.1| photosystem II reaction center protein Psb28 [Dactylococcopsis
salina PCC 8305]
gi|428694798|gb|AFZ50948.1| photosystem II reaction center protein Psb28 [Dactylococcopsis
salina PCC 8305]
Length = 112
Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TIQF +G DE T+PDV+LT+S+DGS+G A F F P V ++ ++TG Y+IDEEG +
Sbjct: 4 TIQFSRGIDEETIPDVRLTRSKDGSSGTATFRFENPKVLNAESN-QEVTGMYLIDEEGII 62
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ DV KFVNG+P+ +EA + M+S EWDRFMRFMER
Sbjct: 63 STQDVKGKFVNGQPTALEAVHYMQSEEEWDRFMRFMER 100
>gi|315320557|ref|YP_004072614.1| photosystem II reaction center protein W [Thalassiosira oceanica
CCMP1005]
gi|283569030|gb|ADB27567.1| photosystem II reaction center protein W [Thalassiosira oceanica
CCMP1005]
Length = 114
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDE 129
+K IQFI+GT+E +PD++LT+SRDGS G A F F ++ D S + G+ITG YMID
Sbjct: 1 MKARIQFIKGTNENILPDIRLTRSRDGSTGTATFRFKNANILDKSLALNGEITGMYMIDI 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EG L++ DV+A F+ G+P ++A YIM+S EW+RFMRFM+R
Sbjct: 61 EGILETRDVTACFIKGKPKAVQAIYIMKSSDEWNRFMRFMKR 102
>gi|158338648|ref|YP_001519825.1| photosystem II reaction center protein Psb28 [Acaryochloris marina
MBIC11017]
gi|359461817|ref|ZP_09250380.1| photosystem II reaction center protein Psb28 [Acaryochloris sp.
CCMEE 5410]
gi|189037924|sp|B0CE32.1|PSB28_ACAM1 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|158308889|gb|ABW30506.1| photosystem II protein Psb28 PsbW [Acaryochloris marina MBIC11017]
Length = 111
Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 73/98 (74%), Gaps = 2/98 (2%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
IQFI+G DE +PDV+LT+++DGS+G AIF F P++ G++ ++ G Y+ DEEG L
Sbjct: 4 AIQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLI-QEGKL-EVMGMYLQDEEGEL 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
++DVSAKFVNG+P IEA Y M+S EWDRFMRFM R
Sbjct: 62 TTLDVSAKFVNGKPHAIEANYDMKSEEEWDRFMRFMNR 99
>gi|332708592|ref|ZP_08428566.1| photosystem II reaction center protein Psb28 [Moorea producens 3L]
gi|332352689|gb|EGJ32255.1| photosystem II reaction center protein Psb28 [Moorea producens 3L]
Length = 111
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPDV+LT+S+ G G A F F++P V+D + +ITG YMIDEEG +
Sbjct: 4 IQFSRGIKEEVVPDVRLTRSKTGQTGSATFIFTKPKVYDKDSK-DEITGMYMIDEEGEIS 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ V+ KFVNG P IEA YIM+SP EWDRFMRFMER
Sbjct: 63 TSKVNGKFVNGEPMAIEATYIMKSPEEWDRFMRFMER 99
>gi|186684071|ref|YP_001867267.1| photosystem II reaction center protein Psb28 [Nostoc punctiforme
PCC 73102]
gi|226712031|sp|B2J5G7.1|PSB28_NOSP7 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|186466523|gb|ACC82324.1| photosystem II protein PsbW, class I [Nostoc punctiforme PCC 73102]
Length = 113
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE+ +P+V+LT+SR G +G A F F+ P + D G DITG Y+ DEEG +
Sbjct: 4 IQFSRGLDEVVIPEVRLTRSRTGDSGTATFIFTNPKILDQ-GSTEDITGMYLSDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKFVNG+P +EA Y+M+S +EWDRFMRFMER
Sbjct: 63 TREVKAKFVNGKPEALEALYVMKSAQEWDRFMRFMER 99
>gi|298490112|ref|YP_003720289.1| photosystem II reaction center protein Psb28 ['Nostoc azollae'
0708]
gi|298232030|gb|ADI63166.1| photosystem II reaction center protein Psb28 ['Nostoc azollae'
0708]
Length = 111
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE+ VPDV+LT+SR G G A F F+ P + G +ITG YMIDEEG +
Sbjct: 4 IQFSRGVDEVVVPDVRLTRSRSGDQGTATFIFTNPQIL-GQGSTDEITGMYMIDEEGEIL 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNG+P +EA Y+M++P EW RFMRFMER
Sbjct: 63 TREVKGKFVNGKPEALEAVYLMKTPEEWTRFMRFMER 99
>gi|215400731|ref|YP_002327492.1| photosystem II protein [Vaucheria litorea]
gi|194441181|gb|ACF70909.1| photosystem II protein [Vaucheria litorea]
Length = 114
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDS-SGEIGDITGFYMIDEEGTL 133
IQFIQG +E+ +P VKLT+S++G+ G A F F+ S+F++ S + G+ITG ++ID EG L
Sbjct: 5 IQFIQGINEINIPRVKLTRSQNGTTGTATFLFTNSSLFNNESSKQGEITGMFLIDNEGIL 64
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ DV+ +F NG+P IEA YIM +P WDRFMRFMER
Sbjct: 65 TTKDVNVRFKNGQPINIEALYIMTNPTNWDRFMRFMER 102
>gi|334118295|ref|ZP_08492385.1| Photosystem II reaction center Psb28 protein [Microcoleus vaginatus
FGP-2]
gi|333460280|gb|EGK88890.1| Photosystem II reaction center Psb28 protein [Microcoleus vaginatus
FGP-2]
Length = 111
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VP+V+LT+S+ G+ G A F F P SS DITG YMIDEEG +
Sbjct: 4 IQFSRGIDEDAVPEVRLTRSKTGAQGTATFIFENPKAL-SSTSTEDITGMYMIDEEGEIL 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKF+NG+P+ +EA Y+MR+P EWDRFMRFMER
Sbjct: 63 TREVKAKFINGQPAGLEALYLMRNPAEWDRFMRFMER 99
>gi|218246061|ref|YP_002371432.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8801]
gi|257059110|ref|YP_003136998.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8802]
gi|226712029|sp|B7K2E0.1|PSB28_CYAP8 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|218166539|gb|ACK65276.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8801]
gi|256589276|gb|ACV00163.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
8802]
Length = 114
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +PDV+LT+SR G +G A F F EPS+F+S ++TG Y++DEEG +
Sbjct: 4 IQFSRGVAEPVIPDVRLTRSRSGQSGTATFYFREPSIFNSES-TDEVTGMYLVDEEGEIT 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+ + IEA IMRSP EWDRFMRFMER
Sbjct: 63 TTEVKGKFINGKATDIEAILIMRSPEEWDRFMRFMER 99
>gi|11465484|ref|NP_045125.1| photosystem II protein W [Cyanidium caldarium]
gi|14195103|sp|Q9TLZ2.1|PSB28_CYACA RecName: Full=Photosystem II reaction center psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|6466387|gb|AAF12969.1|AF022186_92 unknown [Cyanidium caldarium]
Length = 115
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 73/100 (73%), Gaps = 3/100 (3%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF---DSSGEIGDITGFYMIDEEG 131
IQFI+G DE TVP+++LT+SRDG+ G AIFSF P+VF SS G+ITG Y+ D+EG
Sbjct: 4 IQFIKGIDEQTVPEIRLTRSRDGNTGTAIFSFINPTVFLLHSSSQNYGEITGMYLQDDEG 63
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
L + +V+A FVNG+P +EA Y++R+ WDR MRF+ +
Sbjct: 64 ELSTRNVTANFVNGKPKAVEAVYLIRNKSGWDRLMRFINK 103
>gi|209526263|ref|ZP_03274793.1| photosystem II reaction center protein Psb28 [Arthrospira maxima
CS-328]
gi|376007932|ref|ZP_09785114.1| Photosystem II reaction center psb28 protein (Photosystem II
reaction center W protein) (Photosystem II 13 kDa
protein) [Arthrospira sp. PCC 8005]
gi|423062829|ref|ZP_17051619.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
C1]
gi|209493360|gb|EDZ93685.1| photosystem II reaction center protein Psb28 [Arthrospira maxima
CS-328]
gi|375323725|emb|CCE20867.1| Photosystem II reaction center psb28 protein (Photosystem II
reaction center W protein) (Photosystem II 13 kDa
protein) [Arthrospira sp. PCC 8005]
gi|406715785|gb|EKD10938.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
C1]
Length = 111
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 3/99 (3%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF-DSSGEIGDITGFYMIDEEGT 132
+IQF +G DE +PDV+LT+SRDGS G A F F P D + E +ITG Y+IDEEG
Sbjct: 3 SIQFSRGVDEEVIPDVRLTRSRDGSQGTATFRFQNPKALADDATE--EITGMYLIDEEGE 60
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +V KF+NG+ + IEA Y+MRSP EWDRFMRFM R
Sbjct: 61 IVTREVKGKFINGKATDIEATYLMRSPEEWDRFMRFMGR 99
>gi|427717042|ref|YP_007065036.1| Photosystem II reaction center Psb28 protein [Calothrix sp. PCC
7507]
gi|427349478|gb|AFY32202.1| Photosystem II reaction center Psb28 protein [Calothrix sp. PCC
7507]
Length = 112
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +PD++LT+SR G NG A F F P S DITG Y++DEEG L
Sbjct: 4 IQFSRGIDENVIPDIRLTRSRSGENGTATFVFVNPQALSQSNS-DDITGMYLLDEEGELI 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKFVNG+P +EA Y+M++ EWDRFMRFMER
Sbjct: 63 TREVKAKFVNGKPEALEAVYLMKTAEEWDRFMRFMER 99
>gi|428316542|ref|YP_007114424.1| Photosystem II reaction center Psb28 protein [Oscillatoria
nigro-viridis PCC 7112]
gi|428240222|gb|AFZ06008.1| Photosystem II reaction center Psb28 protein [Oscillatoria
nigro-viridis PCC 7112]
Length = 111
Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VP+V+LT+S+ G G A F+F P SS DITG YMID+EG L
Sbjct: 4 IQFSRGIDEDAVPEVRLTRSKSGEQGTATFTFENPKALSSSS-TEDITGMYMIDDEGELL 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKF+NG+P+ +EA YIM+S EWDRFMRFMER
Sbjct: 63 TREVKAKFINGQPAGLEAVYIMKSTAEWDRFMRFMER 99
>gi|409994067|ref|ZP_11277188.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
str. Paraca]
gi|291567871|dbj|BAI90143.1| photosystem II Psb28 protein [Arthrospira platensis NIES-39]
gi|409935059|gb|EKN76602.1| photosystem II reaction center protein Psb28 [Arthrospira platensis
str. Paraca]
Length = 111
Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 69/99 (69%), Gaps = 3/99 (3%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF-DSSGEIGDITGFYMIDEEGT 132
+IQF +G DE +PDV+LT+SRDG G A F F P D + E +ITG Y+IDEEG
Sbjct: 3 SIQFSRGVDEEVIPDVRLTRSRDGGQGTATFRFQNPKALADDATE--EITGMYLIDEEGE 60
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +V KF+NG+ + IEA Y+MRSP EWDRFMRFM R
Sbjct: 61 ITTREVKGKFINGKATDIEATYLMRSPEEWDRFMRFMSR 99
>gi|428308683|ref|YP_007119660.1| photosystem II reaction center protein Psb28 [Microcoleus sp. PCC
7113]
gi|428250295|gb|AFZ16254.1| photosystem II reaction center protein Psb28 [Microcoleus sp. PCC
7113]
Length = 112
Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +PDV+LT+SRDGSNG A F F P DS+ +ITG Y+IDEEG +
Sbjct: 4 IQFSRGIDEEVIPDVRLTRSRDGSNGTATFIFENPKALDSNS-TEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNG+P+ +EA +++S EWDRFMRFMER
Sbjct: 63 TREVKGKFVNGQPTALEAFVLIKSQDEWDRFMRFMER 99
>gi|411117253|ref|ZP_11389740.1| photosystem II reaction center protein Psb28 [Oscillatoriales
cyanobacterium JSC-12]
gi|410713356|gb|EKQ70857.1| photosystem II reaction center protein Psb28 [Oscillatoriales
cyanobacterium JSC-12]
Length = 112
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+++DGSNG A F F P SS +ITG Y+ID+EG +
Sbjct: 5 IQFARGIDEEIIPNVRLTRAKDGSNGTATFYFQNPKAL-SSNMTEEITGMYLIDDEGEIS 63
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKFVNG+P IEA Y+M+S EWDRF+RFMER
Sbjct: 64 TREVKAKFVNGQPDAIEAVYLMKSASEWDRFIRFMER 100
>gi|428304944|ref|YP_007141769.1| Photosystem II reaction center Psb28 protein [Crinalium epipsammum
PCC 9333]
gi|428246479|gb|AFZ12259.1| Photosystem II reaction center Psb28 protein [Crinalium epipsammum
PCC 9333]
Length = 111
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF G E VPDV+LT+SRDGS+G A F F P D+ ++TG YMIDEEG L
Sbjct: 4 IQFSIGVTEDVVPDVRLTRSRDGSHGTATFYFENPKALDND-RTDEVTGMYMIDEEGELV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALL 178
+ +V AKFVNG+P +EA Y+M+S EW+RFMRFMER K L
Sbjct: 63 TREVKAKFVNGKPEALEAVYLMKSQAEWERFMRFMERYAEKNDL 106
>gi|440681196|ref|YP_007155991.1| Photosystem II reaction center Psb28 protein [Anabaena cylindrica
PCC 7122]
gi|428678315|gb|AFZ57081.1| Photosystem II reaction center Psb28 protein [Anabaena cylindrica
PCC 7122]
Length = 111
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G G A F F+ P + + G +ITG YMIDEEG +
Sbjct: 4 IQFSKGVDEEVIPEVRLTRSRSGDQGTATFIFTNPQIL-AQGSNEEITGMYMIDEEGEMI 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNG+P +EA Y+M++P EWDRFMRFM+R
Sbjct: 63 TREVKGKFVNGKPEALEAIYLMKTPEEWDRFMRFMDR 99
>gi|75906816|ref|YP_321112.1| photosystem II reaction center protein Psb28 [Anabaena variabilis
ATCC 29413]
gi|122064923|sp|Q3MFL9.1|PSB28_ANAVT RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|75700541|gb|ABA20217.1| Photosystem II protein PsbW, class I [Anabaena variabilis ATCC
29413]
Length = 111
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G G A F F+ P + D G DITG Y+IDEEG +
Sbjct: 4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNGRP +EA Y+M+S +EW+RF+RFMER
Sbjct: 63 TREVKGKFVNGRPEGVEAVYVMKSAQEWERFIRFMER 99
>gi|282899563|ref|ZP_06307527.1| Photosystem II protein PsbW, class I [Cylindrospermopsis
raciborskii CS-505]
gi|281195442|gb|EFA70375.1| Photosystem II protein PsbW, class I [Cylindrospermopsis
raciborskii CS-505]
Length = 112
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQF +GTDE VPDV+LT+SR G G A F+F P + G ITG YMIDEEG +
Sbjct: 3 SIQFSKGTDEKVVPDVRLTRSRSGDQGTATFTFVNPDIL-QEGNTDGITGMYMIDEEGEI 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNG+P +EA Y++++ +EWDRFMRFM R
Sbjct: 62 VTREVRGKFVNGKPEAVEAVYLIKTSQEWDRFMRFMNR 99
>gi|443312134|ref|ZP_21041754.1| photosystem II reaction center protein Psb28 [Synechocystis sp. PCC
7509]
gi|442777812|gb|ELR88085.1| photosystem II reaction center protein Psb28 [Synechocystis sp. PCC
7509]
Length = 111
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE P+V+LT+SRDG A F F PSV S DITG YMIDEEG +
Sbjct: 4 IQFSKGVDEDVTPNVRLTRSRDGKQSTATFLFQNPSVL-SGNNADDITGMYMIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALLD 179
+ +V KFVNG+P +E YIM S EWDRF+RFMER K LD
Sbjct: 63 TREVKGKFVNGKPEALEVFYIMNSTAEWDRFLRFMERYAEKNDLD 107
>gi|354565723|ref|ZP_08984897.1| Photosystem II reaction center Psb28 protein [Fischerella sp.
JSC-11]
gi|353548596|gb|EHC18041.1| Photosystem II reaction center Psb28 protein [Fischerella sp.
JSC-11]
Length = 111
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G +G A F F P DS G DITG YMIDEEG +
Sbjct: 4 IQFSKGIDEEVIPEVRLTRSRTGDSGTATFIFQNPKALDS-GNTEDITGMYMIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V +FVNG+P +EA Y+M+S +WDRFMRFM+R
Sbjct: 63 TREVKGRFVNGKPEALEAVYLMKSKEQWDRFMRFMQR 99
>gi|428226568|ref|YP_007110665.1| photosystem II reaction center protein Psb28 [Geitlerinema sp. PCC
7407]
gi|427986469|gb|AFY67613.1| photosystem II reaction center protein Psb28 [Geitlerinema sp. PCC
7407]
Length = 111
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 5/99 (5%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPS--VFDSSGEIGDITGFYMIDEEGT 132
IQF G E +PDV+LT++RDGS+G A F F P V +S+ EI TG Y++DEEG
Sbjct: 4 IQFSPGVSEAVIPDVRLTRARDGSSGTATFYFERPQALVGESNAEI---TGMYLVDEEGQ 60
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +V AKF+NG+P +EA YIMRS EWDRFMRFMER
Sbjct: 61 VMTREVKAKFINGQPEALEATYIMRSSEEWDRFMRFMER 99
>gi|282897580|ref|ZP_06305580.1| Photosystem II protein PsbW, class I [Raphidiopsis brookii D9]
gi|281197503|gb|EFA72399.1| Photosystem II protein PsbW, class I [Raphidiopsis brookii D9]
Length = 112
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQF +GTDE VPDV+LT+SR G G A F+F P + G ITG YMIDEEG +
Sbjct: 3 SIQFSKGTDEKVVPDVRLTRSRSGDQGTATFTFVNPDIV-KEGNTDGITGMYMIDEEGEI 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNG+P +EA Y++++ +EWDRFMRFM R
Sbjct: 62 VTREVRGKFVNGKPEAVEAVYLIKTSQEWDRFMRFMNR 99
>gi|17228296|ref|NP_484844.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7120]
gi|81772834|sp|Q8YYP5.1|PSB28_ANASP RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|17130146|dbj|BAB72758.1| photosystem II protein W [Nostoc sp. PCC 7120]
Length = 111
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G G A F F+ P + D G DITG Y+IDEEG +
Sbjct: 4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NGRP +EA Y+M+S +EW+RF+RFMER
Sbjct: 63 TREVKGKFINGRPEGLEAVYVMKSAQEWERFIRFMER 99
>gi|427728794|ref|YP_007075031.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7524]
gi|427364713|gb|AFY47434.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7524]
Length = 111
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G +G A F F+ P + S G +ITG Y+IDEEG L
Sbjct: 4 IQFSRGLDEEVIPEVRLTRSRTGDSGTATFIFTNPKIL-SQGSTEEITGMYLIDEEGELI 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V +FVNG+P +EA Y+M+S EWDRFMRFMER
Sbjct: 63 TREVKGRFVNGKPEALEAVYLMKSSEEWDRFMRFMER 99
>gi|300866289|ref|ZP_07110996.1| Photosystem II reaction center Psb28 protein [Oscillatoria sp. PCC
6506]
gi|300335708|emb|CBN56156.1| Photosystem II reaction center Psb28 protein [Oscillatoria sp. PCC
6506]
Length = 111
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +PDV+LT+S+ G+ G A F+F P +S +ITG YMIDEEG +
Sbjct: 4 IQFSRGIDEDVIPDVRLTRSKTGNQGTATFTFENPKALSNSS-TEEITGMYMIDEEGEIT 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKF+NG+P+ +EA Y+M+S +WDRFMRFMER
Sbjct: 63 TREVKAKFINGQPASLEALYLMKSVEDWDRFMRFMER 99
>gi|434388347|ref|YP_007098958.1| photosystem II reaction center protein Psb28 [Chamaesiphon minutus
PCC 6605]
gi|428019337|gb|AFY95431.1| photosystem II reaction center protein Psb28 [Chamaesiphon minutus
PCC 6605]
Length = 112
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GT E VPDV+LTKSR G G A F F +P++ + ++TG YMIDEEG +
Sbjct: 4 IQFSRGTTEPVVPDVRLTKSRTGEQGKASFYFEKPAILGNDV-TEEVTGLYMIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKFVNG+P +EA YIM S EWDRFMRFMER
Sbjct: 63 TREVKAKFVNGKPEALEAIYIMNSTAEWDRFMRFMER 99
>gi|254422407|ref|ZP_05036125.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
7335]
gi|196189896|gb|EDX84860.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
7335]
Length = 110
Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 68/97 (70%), Gaps = 2/97 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++LT+++D S+G A F F +P G G++TG YM+DEEG L
Sbjct: 4 IQFSRGVKEEVVPDIRLTRAKDLSDGTATFYFDKPKALVEEG--GEVTGMYMVDEEGELS 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ DV+ KFVNG PS IEA ++MR EWDRFMRFM+R
Sbjct: 62 TRDVNGKFVNGEPSGIEAVFVMRGQDEWDRFMRFMDR 98
>gi|318041305|ref|ZP_07973261.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
CB0101]
Length = 123
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 76/114 (66%), Gaps = 7/114 (6%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPD+++T+SRDG G AIF F +P S +GDI G YM+DEEG L
Sbjct: 4 IQFFRGVDEPVVPDIRMTRSRDGRTGQAIFVFDQPEAL-SPESMGDIGGMYMVDEEGQLV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALLDSH-LSLMQK 187
+ +V+AKFVNG+P+ +EA Y ++P +++RFMRF +R DSH L QK
Sbjct: 63 TREVNAKFVNGKPAALEATYTWKTPEDFERFMRFAQR-----YADSHDLGFSQK 111
>gi|428772638|ref|YP_007164426.1| photosystem II reaction center protein Psb28 [Cyanobacterium
stanieri PCC 7202]
gi|428686917|gb|AFZ46777.1| photosystem II reaction center protein Psb28 [Cyanobacterium
stanieri PCC 7202]
Length = 111
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
I+F +G E ++PDVK+T++RDGSNG A F F E + +S G +TG Y+ DEEG L
Sbjct: 4 IEFTKGIIEESIPDVKITRARDGSNGTATFRFEESPILES-GNTQAVTGMYLTDEEGELS 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG P +EA Y+M+S EWDRFMRFMER
Sbjct: 63 TREVKCKFINGEPVALEAIYVMKSVEEWDRFMRFMER 99
>gi|428201030|ref|YP_007079619.1| photosystem II reaction center protein Psb28 [Pleurocapsa sp. PCC
7327]
gi|427978462|gb|AFY76062.1| photosystem II reaction center protein Psb28 [Pleurocapsa sp. PCC
7327]
Length = 111
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +P+V+L++ R+G NGMA F F P++F S+ +ITG Y+IDEEG +
Sbjct: 4 IQFARGVTEEAIPEVRLSRDRNGQNGMAKFYFDSPNIF-SNDSREEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P +EA +M SP+EWDRFMRFMER
Sbjct: 63 TREVKGKFINGKPEAVEAVVVMNSPQEWDRFMRFMER 99
>gi|434406781|ref|YP_007149666.1| photosystem II reaction center protein Psb28 [Cylindrospermum
stagnale PCC 7417]
gi|428261036|gb|AFZ26986.1| photosystem II reaction center protein Psb28 [Cylindrospermum
stagnale PCC 7417]
Length = 111
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPDV+LT+SR G G A F F+ P++ S ++TG YMIDEEG +
Sbjct: 4 IQFSRGIDEEVVPDVRLTRSRSGDQGTATFIFTNPTILGQSS-TEEVTGMYMIDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNG+P +EA +M++P EW+RFMRFMER
Sbjct: 63 TREVKGKFVNGKPEALEALVLMKTPEEWERFMRFMER 99
>gi|427735069|ref|YP_007054613.1| photosystem II reaction center protein Psb28 [Rivularia sp. PCC
7116]
gi|427370110|gb|AFY54066.1| photosystem II reaction center protein Psb28 [Rivularia sp. PCC
7116]
Length = 113
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G +E +P+V+LT+SR G +G A F F+ P D G +ITG YM+DEEG +
Sbjct: 4 IQFSRGVNEEVIPEVRLTRSRSGDSGTATFIFTNPKALDE-GSTDEITGMYMVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P +EA Y+M+S EW+RFMRFMER
Sbjct: 63 TREVKGKFINGKPEALEAIYLMKSAEEWERFMRFMER 99
>gi|119490017|ref|ZP_01622641.1| photosystem II reaction center 13 kDa protein [Lyngbya sp. PCC
8106]
gi|119454169|gb|EAW35321.1| photosystem II reaction center 13 kDa protein [Lyngbya sp. PCC
8106]
Length = 133
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
+ TIQF +G DE +P+V+LT+SRD + G A F F P ++ +ITG Y+IDEE
Sbjct: 22 IMATIQFAKGIDEDVIPNVRLTRSRDNTQGTATFYFDNPKAL-ANDFAEEITGMYLIDEE 80
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
G L + +V AKFVNG+P IEA Y+M+S EW+RFMRFM R
Sbjct: 81 GELLTREVKAKFVNGKPEAIEAFYLMQSEEEWNRFMRFMNR 121
>gi|427712438|ref|YP_007061062.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
6312]
gi|427376567|gb|AFY60519.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
6312]
Length = 110
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 72/97 (74%), Gaps = 2/97 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQFI+G +E VPDV+LT+++DG+NG A F+F P + G + +I G YM+DEEG +
Sbjct: 4 IQFIRGINEEIVPDVRLTRAKDGTNGKAYFTFDNPKIV-QEGNL-EINGMYMVDEEGEIV 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+AKF+NG+ + IEA Y +RS +WDRF+RFM+R
Sbjct: 62 TREVNAKFINGQATAIEATYTIRSAADWDRFIRFMDR 98
>gi|113476038|ref|YP_722099.1| photosystem II reaction center protein Psb28 [Trichodesmium
erythraeum IMS101]
gi|110167086|gb|ABG51626.1| photosystem II protein PsbW, class I [Trichodesmium erythraeum
IMS101]
Length = 120
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF--DSSGEIGDITGFYMIDEEG 131
TIQFIQG DE P+V+LT+SR G+ G A F +P D + EI TG YMIDEEG
Sbjct: 10 TIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKALGQDVTQEI---TGMYMIDEEG 66
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFME 170
+ S DV A+FVNG+P +E Y+M++ +EW+RFMRFME
Sbjct: 67 QITSRDVKARFVNGQPKFLEGLYVMKTKQEWERFMRFME 105
>gi|122064935|sp|Q112E8.2|PSB28_TRIEI RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
Length = 113
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TIQFIQG DE P+V+LT+SR G+ G A F +P +ITG YMIDEEG +
Sbjct: 3 TIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKAL-GQDVTQEITGMYMIDEEGQI 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFME 170
S DV A+FVNG+P +E Y+M++ +EW+RFMRFME
Sbjct: 62 TSRDVKARFVNGQPKFLEGLYVMKTKQEWERFMRFME 98
>gi|159903261|ref|YP_001550605.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9211]
gi|226712032|sp|A9B9Y9.1|PSB28_PROM4 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|159888437|gb|ABX08651.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9211]
Length = 117
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
+ P IQF +G DE +P+++LT+S+DG G AIF F +P S GDITG +ID+E
Sbjct: 6 INPAIQFYEGVDETAIPEIRLTRSKDGKTGQAIFVFQKPDAL-SEATTGDITGMTLIDDE 64
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALL 178
G L++ +V A+F+NG PS IEA Y ++ +++RFMRF ER K L
Sbjct: 65 GALKTREVKARFLNGEPSAIEATYTWKTESDFERFMRFAERYAKKNGL 112
>gi|170077874|ref|YP_001734512.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
7002]
gi|226712033|sp|B1XL01.1|PSB28_SYNP2 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|169885543|gb|ACA99256.1| Photosystem II reaction center W protein [Synechococcus sp. PCC
7002]
Length = 111
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF QG +E VP ++LT+S DGS G A+FSF +P+ + +ITG Y+IDEEG +
Sbjct: 4 IQFSQGVNEPEVPGIRLTRSPDGSTGTAVFSFEDPAAL-AQESTDEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKF +G+P IEA+ +MRS EWDRFMRFMER
Sbjct: 63 TREVKAKFYDGKPRIIEARLVMRSTAEWDRFMRFMER 99
>gi|427725085|ref|YP_007072362.1| Photosystem II reaction center Psb28 protein [Leptolyngbya sp. PCC
7376]
gi|427356805|gb|AFY39528.1| Photosystem II reaction center Psb28 protein [Leptolyngbya sp. PCC
7376]
Length = 111
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 8/105 (7%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF--DSSGEIGDITGFYM 126
MAV IQF QG DE +PD+++T+++DGS G A+F+F +P+ DS+ EI TG Y+
Sbjct: 1 MAV---IQFSQGIDEPEIPDIRVTRAQDGSTGTAVFTFEDPAALAQDSTDEI---TGMYL 54
Query: 127 IDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
IDEEG + + +V KF +G+ IEA+ IMRSP EW+RF+RFMER
Sbjct: 55 IDEEGEIITREVKGKFYDGKARVIEARLIMRSPEEWERFLRFMER 99
>gi|67925021|ref|ZP_00518404.1| Photosystem II reaction centre W protein, PsbW [Crocosphaera
watsonii WH 8501]
gi|416407009|ref|ZP_11688228.1| Photosystem II 13 kDa protein Psb28 (PsbW) [Crocosphaera watsonii
WH 0003]
gi|67853139|gb|EAM48515.1| Photosystem II reaction centre W protein, PsbW [Crocosphaera
watsonii WH 8501]
gi|357260942|gb|EHJ10266.1| Photosystem II 13 kDa protein Psb28 (PsbW) [Crocosphaera watsonii
WH 0003]
Length = 111
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +PD++LT+ + G +G A F F P +FD+ DITG Y++DEEG +
Sbjct: 4 IQFSRGVSETVIPDIRLTRGKKGDSGTATFRFDSPKIFDAQS-TDDITGMYLVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNG+P+ IEA IM S EWDRFMRFMER
Sbjct: 63 TNEVKGKFVNGKPTSIEAFLIMNSQDEWDRFMRFMER 99
>gi|428221102|ref|YP_007105272.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
7502]
gi|427994442|gb|AFY73137.1| photosystem II reaction center protein Psb28 [Synechococcus sp. PCC
7502]
Length = 113
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 71/98 (72%), Gaps = 2/98 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE-IGDITGFYMIDEEGTL 133
IQ +G DE V DV+LT+++DGSNG A F F +P + + + + DITG +M DEEG L
Sbjct: 5 IQLTRGIDE-DVSDVRLTRAKDGSNGTATFIFKDPKCTNEANKALTDITGMFMTDEEGEL 63
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+AKF+NG+P+ IEA YI+ SP+ WDRFMRFM R
Sbjct: 64 VTRNVNAKFINGKPAGIEAVYIIDSPQAWDRFMRFMNR 101
>gi|376403749|ref|YP_005090110.1| psb28 gene product (chloroplast) [Fucus vesiculosus]
gi|269991312|emb|CAX12496.1| photosystem II subunit [Fucus vesiculosus]
Length = 118
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDE 129
+K IQFI+G +E T+P + +T+S DG+ G A F F + S+F + +ITG ++ID+
Sbjct: 1 MKAVIQFIKGIEETTIPIINITRSPDGTTGTATFIFEDASLFYTGINSQNEITGMFLIDK 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EGTL + D++AKF+ G+P ++A YIM++ WDRFMRFMER
Sbjct: 61 EGTLSTRDINAKFIQGKPKTLQAVYIMKNAEAWDRFMRFMER 102
>gi|427420545|ref|ZP_18910728.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
7375]
gi|425756422|gb|EKU97276.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
7375]
Length = 110
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 69/97 (71%), Gaps = 2/97 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF QG E +PDV+LT+++DGS+G A F F +P G ++TG Y++DEEG +
Sbjct: 4 IQFSQGVAEEVIPDVRLTRAKDGSDGTATFYFDKPKALIEEG--SEVTGLYLVDEEGMMT 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
S +V+AKF+NG P+ +EA+ +++S EWDRFMRFM R
Sbjct: 62 SREVNAKFINGAPAGLEARILLKSRDEWDRFMRFMNR 98
>gi|428211216|ref|YP_007084360.1| photosystem II reaction center protein Psb28 [Oscillatoria
acuminata PCC 6304]
gi|427999597|gb|AFY80440.1| photosystem II reaction center protein Psb28 [Oscillatoria
acuminata PCC 6304]
Length = 111
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPDV+LT+S+DG G A F F P++ D +ITG Y++DEEG +
Sbjct: 4 IQFSRGIKEEVVPDVRLTRSKDGKQGTATFYFKNPAILDKDS-TDEITGMYLLDEEGEIA 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
DV KFVNG+ IEA ++M+S +WDRFMRFMER
Sbjct: 63 CRDVKGKFVNGQADGIEATHVMKSQADWDRFMRFMER 99
>gi|403066642|ref|YP_006639131.1| photosystem II reaction center protein W (chloroplast) [Saccharina
japonica]
gi|378787555|gb|AFC40185.1| photosystem II reaction center protein W (chloroplast) [Saccharina
japonica]
Length = 114
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDE 129
+K IQFI+G +E T+P + +T+S DG+ G A F F + S+F + +ITG ++ID+
Sbjct: 1 MKAIIQFIKGVEETTIPTINITRSTDGTTGTATFIFEDASLFYTVVNPESEITGMFLIDK 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EGTL + D++AKF+ G+P ++A YIM++ WDRFMRFMER
Sbjct: 61 EGTLSTKDLNAKFIEGKPKTLQALYIMKNAEAWDRFMRFMER 102
>gi|428300812|ref|YP_007139118.1| Photosystem II reaction center Psb28 protein [Calothrix sp. PCC
6303]
gi|428237356|gb|AFZ03146.1| Photosystem II reaction center Psb28 protein [Calothrix sp. PCC
6303]
Length = 110
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +PDV+LT+SR G +G A F F P D++ +ITG YMIDEEG +
Sbjct: 4 IQFSKGITEEVIPDVRLTRSRSGESGTATFFFQNPRALDATS-TEEITGMYMIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALLD 179
+ +V KFVNG+ +EA +IM+S EWDRFMRFMER + LD
Sbjct: 63 TREVKGKFVNGKADALEALHIMKSVEEWDRFMRFMERYAEQNGLD 107
>gi|293651705|pdb|2KVO|A Chain A, Solution Nmr Structure Of Photosystem Ii Reaction Center
Psb28 Protein From Synechocystis Sp.(Strain Pcc 6803),
Northeast Structural Genomics Consortium Target Sgr171
Length = 120
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP+V+L+KS++G +GMA F F EP++ + DITG Y+ID+EG +
Sbjct: 4 IQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTIL-AKESTDDITGMYLIDDEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NGRP+ IEA I+ S EWDRFMRFMER
Sbjct: 63 TREVKGKFINGRPTAIEATVILNSQPEWDRFMRFMER 99
>gi|16329210|ref|NP_439938.1| photosystem II reaction center protein Psb28 [Synechocystis sp. PCC
6803]
gi|383320949|ref|YP_005381802.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383324119|ref|YP_005384972.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383490003|ref|YP_005407679.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384435269|ref|YP_005649993.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803]
gi|451813369|ref|YP_007449821.1| photosystem II 13 kD protein [Synechocystis sp. PCC 6803]
gi|3334306|sp|Q55356.3|PSB28_SYNY3 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|1183850|dbj|BAA11641.1| 13 kDa protein of photosystem II [Synechocystis sp. PCC 6803]
gi|1651690|dbj|BAA16618.1| photosystem II 13 kD protein [Synechocystis sp. PCC 6803]
gi|339272301|dbj|BAK48788.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803]
gi|359270268|dbj|BAL27787.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359273439|dbj|BAL30957.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359276609|dbj|BAL34126.1| photosystem II 13 kD protein Psb28 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407957077|dbj|BAM50317.1| photosystem II reaction center protein Psb28 [Bacillus subtilis
BEST7613]
gi|451779338|gb|AGF50307.1| photosystem II 13 kD protein [Synechocystis sp. PCC 6803]
Length = 112
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP+V+L+KS++G +GMA F F EP++ + DITG Y+ID+EG +
Sbjct: 4 IQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTIL-AKESTDDITGMYLIDDEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NGRP+ IEA I+ S EWDRFMRFMER
Sbjct: 63 TREVKGKFINGRPTAIEATVILNSQPEWDRFMRFMER 99
>gi|414078466|ref|YP_006997784.1| photosystem II reaction center protein Psb28 [Anabaena sp. 90]
gi|413971882|gb|AFW95971.1| photosystem II reaction center protein Psb28 [Anabaena sp. 90]
Length = 111
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G +E VPDV+LT+++ G +G A F F+ P + G ++TG Y+IDEEG +
Sbjct: 4 IQFAKGIEETVVPDVRLTRAKQGESGTATFIFTNPDILAQDG-TDEVTGLYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+V KFVNG+P +EA Y+M S EWDRFMRFM R
Sbjct: 63 IRNVQGKFVNGKPESLEAIYVMNSNDEWDRFMRFMNR 99
>gi|126657299|ref|ZP_01728458.1| photosystem II 13 kD protein [Cyanothece sp. CCY0110]
gi|172036514|ref|YP_001803015.1| photosystem II reaction center protein Psb28 [Cyanothece sp. ATCC
51142]
gi|354553297|ref|ZP_08972604.1| Photosystem II reaction center Psb28 protein [Cyanothece sp. ATCC
51472]
gi|254783428|sp|B1WXW2.1|PSB28_CYAA5 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|126621286|gb|EAZ91998.1| photosystem II 13 kD protein [Cyanothece sp. CCY0110]
gi|171697968|gb|ACB50949.1| photosystem II 13 kD protein [Cyanothece sp. ATCC 51142]
gi|353555127|gb|EHC24516.1| Photosystem II reaction center Psb28 protein [Cyanothece sp. ATCC
51472]
Length = 111
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP+V+LT+++ G++G A F F P++ D+ DITG Y++DEEG +
Sbjct: 4 IQFSRGVSEPVVPEVRLTRAKSGNSGTATFRFESPTILDAES-TDDITGMYLVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P+ +EA IM S EWDRFMRFMER
Sbjct: 63 TREVKGKFINGKPTSVEAILIMNSQDEWDRFMRFMER 99
>gi|87302778|ref|ZP_01085589.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. WH 5701]
gi|87282661|gb|EAQ74619.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. WH 5701]
Length = 133
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +PD++LT+SRDG G A+F F +P +GDITG +++DEEG L
Sbjct: 4 IQFFRGVDEPVIPDIRLTRSRDGRTGQALFVFEQPQALAPEA-MGDITGMFLLDEEGELV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V A+FVNG+PS +EA Y ++ ++DRFMRF ER
Sbjct: 63 TREVKARFVNGKPSALEATYTWKTEADFDRFMRFAER 99
>gi|87124281|ref|ZP_01080130.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. RS9917]
gi|86167853|gb|EAQ69111.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. RS9917]
Length = 139
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G +E VPD++LT+SRDG G A+F F EP + +GDITG +++DEEGTL
Sbjct: 20 IQFFRGVNEPVVPDIRLTRSRDGRTGQAMFVFEEPDAL-APESMGDITGMFLVDEEGTLV 78
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V A+FVNG+PS IEA Y +S +++RFMRF +R
Sbjct: 79 TREVKARFVNGKPSAIEATYTWKSEVDFERFMRFAQR 115
>gi|148239691|ref|YP_001225078.1| photosystem II reaction center protein Psb28 [Synechococcus sp. WH
7803]
gi|166989936|sp|A5GLG6.1|PSB28_SYNPW RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|147848230|emb|CAK23781.1| Photosystem II reaction centre Psb28 protein [Synechococcus sp. WH
7803]
Length = 129
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +GTDE VPD++LT+SRDG G A F F +P + +G+I G +M+DEEG
Sbjct: 6 KAAIQFFRGTDEPVVPDIRLTRSRDGRTGQATFIFEQPEAL-APETLGNIAGMWMVDEEG 64
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
L + +V+ KFVNG+PS +EA Y ++ ++++RFMRF ER
Sbjct: 65 ELVTREVNGKFVNGKPSALEATYTWKTEQDFERFMRFAER 104
>gi|194476724|ref|YP_002048903.1| putative photosystem II reaction center Psb28 [Paulinella
chromatophora]
gi|171191731|gb|ACB42693.1| putative photosystem II reaction center Psb28 [Paulinella
chromatophora]
Length = 124
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TIQF +G DEL +PD+++T+SRDG G A F F +P + +G+ITG +MIDEEG L
Sbjct: 3 TIQFFRGVDELVLPDIRMTRSRDGRTGQATFRFEQPVAL-APETLGNITGMFMIDEEGEL 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V A FVNG+PS +EA Y +S +++RFMRF +R
Sbjct: 62 ITREVKASFVNGKPSALEATYTWKSESDFERFMRFAQR 99
>gi|427706029|ref|YP_007048406.1| Photosystem II reaction center Psb28 protein [Nostoc sp. PCC 7107]
gi|427358534|gb|AFY41256.1| Photosystem II reaction center Psb28 protein [Nostoc sp. PCC 7107]
Length = 111
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +PDV+LT+SR G G A F F+ P + S ++TG YM+DEEG +
Sbjct: 4 IQFSRGLDENVLPDVRLTRSRSGDTGTATFIFTNPKILSQSSS-EEVTGMYMLDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V A+FVNG+ +EA +IM+S EWDRF+RFMER
Sbjct: 63 TREVKARFVNGKAEALEAVHIMKSADEWDRFIRFMER 99
>gi|220909872|ref|YP_002485183.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7425]
gi|254783429|sp|B8HK72.1|PSB28_CYAP4 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|219866483|gb|ACL46822.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7425]
Length = 110
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 70/97 (72%), Gaps = 2/97 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF++G +E VPDV+LT+++DG+ G A+F F P + G + +I G YM+DEEG +
Sbjct: 4 IQFVRGVNEGVVPDVRLTRAKDGNTGRAVFYFDNPQLV-QEGNL-EIMGMYMVDEEGEIV 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+AKF+NG+ + IEA Y +RS EWDRF+RFM R
Sbjct: 62 TREVNAKFINGKATAIEAIYTIRSAPEWDRFIRFMNR 98
>gi|88808467|ref|ZP_01123977.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. WH 7805]
gi|88787455|gb|EAR18612.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. WH 7805]
Length = 129
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +GTDE VPD++LT+SRDG G A F F +P + +G+I G +M+DEEG
Sbjct: 6 KAAIQFFRGTDEPVVPDIRLTRSRDGRTGQATFIFEQPEAL-APETLGNIAGMWMVDEEG 64
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +V+ KFVNG+PS +EA Y ++ ++++RFMRF ER
Sbjct: 65 EMVTREVNGKFVNGKPSALEATYTWKTEQDFERFMRFAER 104
>gi|352094188|ref|ZP_08955359.1| Photosystem II reaction center Psb28 protein [Synechococcus sp. WH
8016]
gi|351680528|gb|EHA63660.1| Photosystem II reaction center Psb28 protein [Synechococcus sp. WH
8016]
Length = 128
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 73/101 (72%), Gaps = 3/101 (2%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD-ITGFYMIDEE 130
K IQF++G DE VPD+++T+SRDG G AIF F +P + E+ + ITG +M+DEE
Sbjct: 6 KAVIQFLRGVDEPVVPDIRVTRSRDGRTGQAIFVFEQPEAL--APEVMEAITGMFMLDEE 63
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
GTL + +V+ KFVNG+PS +EA Y +S ++++RFMRF +R
Sbjct: 64 GTLVTREVNGKFVNGKPSALEATYTWKSEQDFERFMRFAQR 104
>gi|427701781|ref|YP_007045003.1| photosystem II reaction center protein Psb28 [Cyanobium gracile PCC
6307]
gi|427344949|gb|AFY27662.1| photosystem II reaction center protein Psb28 [Cyanobium gracile PCC
6307]
Length = 124
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPD++LT+SRDG G A F F EP + +GDITG +M+DEEG +
Sbjct: 5 IQFFRGVDETVVPDIRLTRSRDGRTGQATFVFEEPEAL-APQSVGDITGMFMLDEEGEMV 63
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V A+FVNG+ S +EA Y +S +++RFMRF +R
Sbjct: 64 TREVKARFVNGKASALEATYTWKSTADFERFMRFAQR 100
>gi|269101016|ref|YP_003289164.1| Photosystem II reaction center protein W [Ectocarpus siliculosus]
gi|266631524|emb|CAV31195.1| Photosystem II reaction center protein W [Ectocarpus siliculosus]
gi|270118654|emb|CAT18706.1| Photosystem II reaction center protein W [Ectocarpus siliculosus]
Length = 114
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDE 129
+K IQFI+G +E T+P + +T+S DG+ G A F F + S+F + +I+G ++ID+
Sbjct: 1 MKAIIQFIKGVEETTIPTINITRSTDGTTGTATFIFEDASLFYTGINPESEISGMFLIDK 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EG L + D++AKF+ G+P ++A YIM++ WDRFMRFMER
Sbjct: 61 EGVLSTKDLNAKFIEGKPKTLQALYIMKNAEAWDRFMRFMER 102
>gi|443323027|ref|ZP_21052038.1| photosystem II reaction center protein Psb28 [Gloeocapsa sp. PCC
73106]
gi|442787208|gb|ELR96930.1| photosystem II reaction center protein Psb28 [Gloeocapsa sp. PCC
73106]
Length = 111
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF QG E T+P+V+LT+S +G +G A F F P DS +ITG Y++DEEG +
Sbjct: 4 IQFTQGIIEETIPNVRLTRSANGQSGTATFYFDLPKALDSDN-TEEITGMYLVDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNG+ +EA Y+M++P +W+RFMRFM R
Sbjct: 63 TREVKGKFVNGKAQALEAIYVMKTPEQWERFMRFMAR 99
>gi|254431161|ref|ZP_05044864.1| photosystem II reaction center protein Psb28 [Cyanobium sp. PCC
7001]
gi|197625614|gb|EDY38173.1| photosystem II reaction center protein Psb28 [Cyanobium sp. PCC
7001]
Length = 124
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 6/107 (5%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPD++LT+SRDG G A+F F EP + +GDITG +++DEEG L
Sbjct: 5 IQFFRGVDEPVVPDIRLTRSRDGRTGQAMFVFEEPDAL-APESMGDITGMFLVDEEGELV 63
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALLDSH 181
+ +V A+FVNG+ S IEA Y +S +++RFMRF +R DSH
Sbjct: 64 TREVKARFVNGKASAIEATYTWKSTADFERFMRFAQR-----YADSH 105
>gi|148242403|ref|YP_001227560.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
RCC307]
gi|147850713|emb|CAK28207.1| Photosystem II reaction centre Psb28 protein [Synechococcus sp.
RCC307]
Length = 112
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +PD+KLT+SRDG G A F F EP + +GDITG +M+DEEG L
Sbjct: 5 IQFFRGVDEPVIPDIKLTRSRDGMTGQAKFVFEEPQAL-APETMGDITGMFMVDEEGELT 63
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
S DV+A+FVNG +EA Y +S ++ RFMRF ER
Sbjct: 64 SRDVNARFVNGVAFALEATYTWKSEADFQRFMRFAER 100
>gi|425439965|ref|ZP_18820276.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9717]
gi|389719699|emb|CCH96504.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9717]
Length = 112
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSKGLKEPVVPDIRLSRTKTGEKGSAKFYFEQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P+ IEA I SP EWDRFMRFMER
Sbjct: 63 TREVKGKFINGKPTAIEATVIFNSPAEWDRFMRFMER 99
>gi|422304385|ref|ZP_16391731.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9806]
gi|389790447|emb|CCI13652.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9806]
Length = 112
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSRGLKEPVVPDIRLSRTKTGEKGSAKFYFEQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P+ IEA I SP EWDRFMRFMER
Sbjct: 63 TREVKGKFINGKPTAIEATVIFNSPAEWDRFMRFMER 99
>gi|452821442|gb|EME28472.1| [pt] photosystem II reaction center 13kDa protein [Galdieria
sulphuraria]
Length = 98
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 65/98 (66%), Gaps = 17/98 (17%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQFI G DE +PD+KLT+S+DG A DITG Y+IDEEG +
Sbjct: 3 SIQFITGLDEKEIPDIKLTRSKDGKTDQA-----------------DITGMYLIDEEGEM 45
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+AKFVNG+P +IEA YI+++ EWDRFMRFM+R
Sbjct: 46 VTREVNAKFVNGKPYKIEALYIIKNNDEWDRFMRFMDR 83
>gi|218439882|ref|YP_002378211.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7424]
gi|226712028|sp|B7K9Y7.1|PSB28_CYAP7 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|218172610|gb|ACK71343.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7424]
Length = 111
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +P ++LT+SR G +G A F F P++F + + ++TG Y+ID EG +
Sbjct: 4 IQFARGLVEDAIPTIRLTRSRTGDSGTATFYFESPNIF-ADEQTQEVTGMYLIDSEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
S +V KF+NG+P IEA IM SP EW+RFMRFMER
Sbjct: 63 SREVKGKFINGKPHAIEAILIMNSPDEWERFMRFMER 99
>gi|124023340|ref|YP_001017647.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9303]
gi|166989933|sp|A2CA72.1|PSB28_PROM3 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|123963626|gb|ABM78382.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9303]
Length = 117
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQFI+G DE VPD+KLT+S DG G A+F F +P + G ITG +M+DEEG L
Sbjct: 10 IQFIRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMLDEEGELV 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+A+FVNG+PS +E YI +S +++RFMRF +R
Sbjct: 69 TREVNARFVNGQPSALEVTYIWKSEEDFERFMRFAKR 105
>gi|33240221|ref|NP_875163.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|81664649|sp|Q7VCG9.1|PSB28_PROMA RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|33237748|gb|AAP99815.1| Photosystem II reaction centre W protein [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 117
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TI+F++G DE ++P+++LT+SRDG G A F+F EP S+ + G I G M DEEG L
Sbjct: 9 TIRFLEGIDETSIPEIRLTRSRDGRTGQAFFTFEEPQAL-SAVKDGSIQGMSMFDEEGEL 67
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
++ +V A+FVNG PS +EA Y+ +S ++ RFMRF +R
Sbjct: 68 KTREVKARFVNGTPSALEATYVWKSESDFQRFMRFAKR 105
>gi|443317023|ref|ZP_21046446.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
6406]
gi|442783363|gb|ELR93280.1| photosystem II reaction center protein Psb28 [Leptolyngbya sp. PCC
6406]
Length = 111
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
I+F +G E +PDV++T+S+DGSNG A F F P S E ++TG Y++DEEG +
Sbjct: 4 IEFARGVVEEVIPDVRMTRSKDGSNGTATFYFEYPKAL-SQDEGVEVTGMYLVDEEGEMV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ DV+ KF+NG P+ IEA Y ++S +W+RFMRFM R
Sbjct: 63 TRDVNGKFINGEPAGIEATYSIKSLADWERFMRFMNR 99
>gi|425438192|ref|ZP_18818598.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9432]
gi|425449162|ref|ZP_18829005.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 7941]
gi|425462816|ref|ZP_18842283.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9808]
gi|389676666|emb|CCH94334.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9432]
gi|389764335|emb|CCI09346.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 7941]
gi|389824087|emb|CCI27278.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9808]
Length = 112
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y++DEEG +
Sbjct: 4 IQFSRGLKEPVVPDIRLSRTKTGEKGSAKFYFDQPTILGDQ-QTEEITGMYLVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P+ IEA I SP EWDRFMRFMER
Sbjct: 63 TREVKGKFINGKPTAIEATVIFNSPAEWDRFMRFMER 99
>gi|166368180|ref|YP_001660453.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa NIES-843]
gi|425464851|ref|ZP_18844161.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9809]
gi|226712030|sp|B0JGJ5.1|PSB28_MICAN RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|166090553|dbj|BAG05261.1| photosystem II reaction center 13 kDa protein [Microcystis
aeruginosa NIES-843]
gi|389833024|emb|CCI22854.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9809]
Length = 112
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSKGLKEPVVPDIRLSRTKTGEKGSAEFYFKQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ V KF+NG+P IEA I SP EWDRFMRFMER
Sbjct: 63 TTKVKGKFINGKPMAIEATVIFNSPAEWDRFMRFMER 99
>gi|425454825|ref|ZP_18834551.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9807]
gi|389804402|emb|CCI16631.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9807]
Length = 112
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSRGLKESVVPDIRLSRTKTGEKGSAKFYFDQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P IEA I SP EWDRFMRFMER
Sbjct: 63 TREVKGKFINGKPMAIEATVIFNSPAEWDRFMRFMER 99
>gi|440755161|ref|ZP_20934363.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa TAIHU98]
gi|440175367|gb|ELP54736.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa TAIHU98]
Length = 112
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y++DEEG +
Sbjct: 4 IQFSRGLKEPVVPDIRLSRTKTGEKGSAKFYFDQPTILGDQ-QTEEITGMYLVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P+ IEA + SP EWDRFMRFMER
Sbjct: 63 TREVKGKFINGKPTAIEATVVFNSPAEWDRFMRFMER 99
>gi|33862877|ref|NP_894437.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9313]
gi|81573196|sp|Q7TV11.1|PSB28_PROMM RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|33634793|emb|CAE20779.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9313]
Length = 117
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPD+KLT+S DG G A+F F +P + G ITG +MIDEEG L
Sbjct: 10 IQFTRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMIDEEGELV 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+A+FVNG+PS +E YI +S +++RFMRF +R
Sbjct: 69 TREVNARFVNGKPSALEVTYIWKSEADFERFMRFAKR 105
>gi|425444146|ref|ZP_18824203.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9443]
gi|443663500|ref|ZP_21133137.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa DIANCHI905]
gi|159026619|emb|CAO86551.1| psbW [Microcystis aeruginosa PCC 7806]
gi|389730576|emb|CCI05181.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9443]
gi|443331886|gb|ELS46525.1| photosystem II reaction center protein Psb28 [Microcystis
aeruginosa DIANCHI905]
Length = 112
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSRGLKEPVVPDIRLSRTKTGEKGSAKFYFDQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P IEA I SP EWDRFMRFMER
Sbjct: 63 TREVKGKFINGKPMAIEATVIFNSPAEWDRFMRFMER 99
>gi|443329572|ref|ZP_21058157.1| photosystem II reaction center protein Psb28 [Xenococcus sp. PCC
7305]
gi|442790910|gb|ELS00412.1| photosystem II reaction center protein Psb28 [Xenococcus sp. PCC
7305]
Length = 112
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGT 132
+IQF +G E VPD+K+T+SR+ G AIF F P D +ITG Y+ID+EG
Sbjct: 2 ASIQFSRGVIEDAVPDIKVTRSRNLDGGKAIFYFEAPKALDQDS-TDEITGMYLIDDEGE 60
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ S DV KF+NG+ S IEA +MRS EW+RF+RFM++
Sbjct: 61 IVSRDVKGKFINGKASAIEATLLMRSAEEWERFIRFMDK 99
>gi|425472582|ref|ZP_18851423.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9701]
gi|389881328|emb|CCI38118.1| Photosystem II reaction center Psb28 protein [Microcystis
aeruginosa PCC 9701]
Length = 112
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSRGLKEPVVPDIRLSRTKTGEKGSAKFYFDQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P IEA + SP EWDRFMRFMER
Sbjct: 63 TREVKGKFINGKPMAIEATVVFNSPAEWDRFMRFMER 99
>gi|33865599|ref|NP_897158.1| photosystem II reaction center protein Psb28 [Synechococcus sp. WH
8102]
gi|81574696|sp|Q7U7C0.1|PSB28_SYNPX RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|33632769|emb|CAE07580.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. WH 8102]
Length = 127
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
K +IQF +G DE VPD++LT+SRDG G A F F +P+ + +GDITG +M+DEE
Sbjct: 2 AKASIQFFRGVDEPVVPDIRLTRSRDGLTGQATFRFEQPAAI-APETMGDITGMWMVDEE 60
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
G + + +++ KFVNG S +EA Y +S ++++RFMRF +R
Sbjct: 61 GEMVTREINGKFVNGTASALEAVYSWKSVQDFERFMRFAQR 101
>gi|116074654|ref|ZP_01471915.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. RS9916]
gi|116067876|gb|EAU73629.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. RS9916]
Length = 128
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +G +E VPD+++T+SRDG G A F F EP + +GDI G +M+DEEG
Sbjct: 6 KAAIQFFRGVNEPVVPDIRMTRSRDGRTGQAKFVFEEPQAL-APETLGDIAGMWMVDEEG 64
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+L + +V+ +FVNG+P +EA Y +S +++RFMRF +R
Sbjct: 65 SLVTREVNGRFVNGKPFALEATYTWKSEADFERFMRFAQR 104
>gi|78212728|ref|YP_381507.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
CC9605]
gi|122064934|sp|Q3AKD0.1|PSB28_SYNSC RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|78197187|gb|ABB34952.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. CC9605]
Length = 127
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +G +E VPD++LT+SRDG G A F F +P+ + +GDITG +M+DEEG
Sbjct: 3 KAAIQFFRGVNEPVVPDIRLTRSRDGRTGQATFRFEQPAAI-APETMGDITGMWMVDEEG 61
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +V+ KFVNG S +EA Y +S ++++RFMRF +R
Sbjct: 62 EMVTREVNGKFVNGTASALEAVYSWKSEQDFERFMRFAQR 101
>gi|260436441|ref|ZP_05790411.1| photosystem II reaction center protein Psb28 [Synechococcus sp. WH
8109]
gi|260414315|gb|EEX07611.1| photosystem II reaction center protein Psb28 [Synechococcus sp. WH
8109]
Length = 133
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +G +E VPD++LT+SRDG G A F F +P+ + +GDITG +M+DEEG
Sbjct: 9 KAAIQFFRGVNEPVVPDIRLTRSRDGRTGQATFRFEQPAAI-APETMGDITGMWMVDEEG 67
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +V+ KFVNG S +EA Y +S ++++RFMRF +R
Sbjct: 68 EMVTREVNGKFVNGTASALEAVYSWKSEQDFERFMRFAQR 107
>gi|434400393|ref|YP_007134397.1| Photosystem II reaction center Psb28 protein [Stanieria
cyanosphaera PCC 7437]
gi|428271490|gb|AFZ37431.1| Photosystem II reaction center Psb28 protein [Stanieria
cyanosphaera PCC 7437]
Length = 111
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +PD+++T+SR G++G A F F P + S ++TG Y++DEEG +
Sbjct: 4 IQFSRGVTEEVIPDIRVTRSRTGNSGTATFYFEFPKIL-SQESTDEVTGMYLVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNG+P+ IEA IM+S EW+RF+RFM+R
Sbjct: 63 TREVKGKFVNGKPTAIEAVLIMKSAEEWERFIRFMDR 99
>gi|113954403|ref|YP_730788.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
CC9311]
gi|122064932|sp|Q0I9T4.1|PSB28_SYNS3 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|113881754|gb|ABI46712.1| photosystem II reaction center protein PsbW [Synechococcus sp.
CC9311]
Length = 128
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 71/101 (70%), Gaps = 3/101 (2%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD-ITGFYMIDEE 130
K IQF++G DE VPD+++T+SRDG G AIF F +P + E+ + ITG +M+DEE
Sbjct: 6 KAVIQFLRGVDEPVVPDIRVTRSRDGRTGQAIFVFEQPEAL--APEVMEAITGMFMLDEE 63
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
G L + +V+ KFVNG+ S +EA Y +S ++++RFMRF +R
Sbjct: 64 GMLVTREVNGKFVNGKASALEATYTWKSEQDFERFMRFAQR 104
>gi|307150103|ref|YP_003885487.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7822]
gi|306980331|gb|ADN12212.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7822]
Length = 112
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP +K+T+SR G + A F F P++F + + ++TG Y+ID EG +
Sbjct: 4 IQFARGLKEDAVPTIKVTRSRTGDSATATFYFDSPNIF-ADDQTQEVTGMYLIDSEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P IEA IM S EW+RFMRFMER
Sbjct: 63 TREVKGKFINGKPQAIEALLIMNSASEWERFMRFMER 99
>gi|390438745|ref|ZP_10227187.1| Photosystem II reaction center Psb28 protein [Microcystis sp. T1-4]
gi|389837829|emb|CCI31311.1| Photosystem II reaction center Psb28 protein [Microcystis sp. T1-4]
Length = 112
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP+++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSRGLKEPVVPNIRLSRTKTGEKGSAEFYFEQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ V KF+NG+P I+A I SP EWDRFMRFMER
Sbjct: 63 TTKVEGKFINGKPMAIKATVIFNSPAEWDRFMRFMER 99
>gi|116070720|ref|ZP_01467989.1| hypothetical protein BL107_13780 [Synechococcus sp. BL107]
gi|116066125|gb|EAU71882.1| hypothetical protein BL107_13780 [Synechococcus sp. BL107]
Length = 131
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQF +G DE VPD++LT+SRDG G A F F +P + G+I G +M+DEEG +
Sbjct: 9 SIQFFRGVDEPVVPDIRLTRSRDGRTGQATFVFEQPQAL-APETFGNIGGMWMVDEEGEM 67
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+ KFVNG PS +EA Y ++ +++RFMRF +R
Sbjct: 68 VTREVNGKFVNGIPSALEATYTWKTEEDFERFMRFAQR 105
>gi|78184846|ref|YP_377281.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
CC9902]
gi|122064933|sp|Q3AXG3.1|PSB28_SYNS9 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|78169140|gb|ABB26237.1| putative photosystem II reaction center Psb28 protein
[Synechococcus sp. CC9902]
Length = 131
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQF +G DE VPD++LT+SRDG G A F F +P + G+I G +M+DEEG +
Sbjct: 9 SIQFFRGVDEPVVPDIRLTRSRDGRTGQATFVFEQPQAL-APETFGNIGGMWMVDEEGEM 67
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+ KFVNG PS +EA Y ++ +++RFMRF +R
Sbjct: 68 VTREVNGKFVNGIPSALEATYTWKTEEDFERFMRFAQR 105
>gi|78779258|ref|YP_397370.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9312]
gi|122064927|sp|Q31B11.1|PSB28_PROM9 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|78712757|gb|ABB49934.1| photosystem II reaction center Psb28 protein-like protein
[Prochlorococcus marinus str. MIT 9312]
Length = 117
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG++G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTSGQALFQFEKPQALSSITD-GEITGMRMIDAEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +EA YI +S ++DRFMRF
Sbjct: 68 TREVKVKFVDGEPIFLEAVYIWKSTSDFDRFMRF 101
>gi|157413299|ref|YP_001484165.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9215]
gi|166989932|sp|A8G4P8.1|PSB28_PROM2 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|157387874|gb|ABV50579.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9215]
Length = 117
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +EA YI ++ ++DRFMRF
Sbjct: 68 TKEVKVKFVDGEPIYLEAVYIWKNSSDFDRFMRF 101
>gi|254526267|ref|ZP_05138319.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9202]
gi|221537691|gb|EEE40144.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9202]
Length = 117
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +EA YI ++ ++DRFMRF
Sbjct: 68 TKEVKVKFVDGEPIYLEAVYIWKNSSDFDRFMRF 101
>gi|323455270|gb|EGB11139.1| hypothetical protein AURANDRAFT_22066 [Aureococcus anophagefferens]
Length = 151
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD---ITGFYMIDEEG 131
IQF +G E VPDVK+T+SRDG NG+A F F PS F+ E IT M+DEEG
Sbjct: 40 IQFYEGMFEPDVPDVKITRSRDGDNGVATFDFQAPSFFNCESEADRARAITAMTMMDEEG 99
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
L + +V+A+FV+G P + +Y M +P +DRF+RFM R
Sbjct: 100 ELSTPNVNARFVDGDPVGLVVRYEMTTPAAFDRFIRFMGR 139
>gi|126696271|ref|YP_001091157.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9301]
gi|166989930|sp|A3PCT1.1|PSB28_PROM0 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|126543314|gb|ABO17556.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9301]
Length = 117
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +EA YI ++ ++DRFMRF
Sbjct: 68 TREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRF 101
>gi|123968467|ref|YP_001009325.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. AS9601]
gi|166989935|sp|A2BR07.1|PSB28_PROMS RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|123198577|gb|ABM70218.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. AS9601]
Length = 117
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDTEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +EA YI ++ ++DRFMRF
Sbjct: 68 TREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRF 101
>gi|123966242|ref|YP_001011323.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. MIT 9515]
gi|166989934|sp|A2BWQ5.1|PSB28_PROM5 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|123200608|gb|ABM72216.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. MIT 9515]
Length = 117
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GT+E VP+++LT+ DG+ G AIF F +P S E G+ITG MID EG +
Sbjct: 9 IQFYEGTNEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSITE-GEITGMRMIDSEGEIM 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +E YI ++ ++DRFMRF
Sbjct: 68 TREVKVKFVDGEPMYLEGTYIWKTKSDFDRFMRF 101
>gi|33861483|ref|NP_893044.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|81573006|sp|Q7TU94.1|PSB28_PROMP RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|33634060|emb|CAE19385.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 117
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+ DG+ G AIF F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSVAD-GEITGMRMIDAEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +E YI ++ ++DRFMRF
Sbjct: 68 TREVKVKFVDGEPMFLEGTYIWKTKSDFDRFMRF 101
>gi|414878787|tpg|DAA55918.1| TPA: hypothetical protein ZEAMMB73_027919 [Zea mays]
Length = 58
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 39/46 (84%), Positives = 45/46 (97%)
Query: 126 MIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
MID+EG LQSVDVSAKFVNG+P+RIEAKY+MR+PR+WDRFMRFMER
Sbjct: 1 MIDDEGVLQSVDVSAKFVNGKPARIEAKYVMRTPRDWDRFMRFMER 46
>gi|428218909|ref|YP_007103374.1| Photosystem II reaction center Psb28 protein [Pseudanabaena sp. PCC
7367]
gi|427990691|gb|AFY70946.1| Photosystem II reaction center Psb28 protein [Pseudanabaena sp. PCC
7367]
Length = 112
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGT 132
TIQ G +E DV+LT+S+DGS A F F P +ITG YM DEEG
Sbjct: 3 ATIQLALGVNE-EASDVRLTRSKDGSTSTATFIFENPLCMTEGQVNNEITGMYMSDEEGE 61
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + V+AKF+NG+P+ IEA Y M EW+RF+RFM R
Sbjct: 62 MVTRSVNAKFINGQPAGIEAIYRMDGEAEWERFLRFMNR 100
>gi|443479229|ref|ZP_21068851.1| Photosystem II reaction center Psb28 protein [Pseudanabaena biceps
PCC 7429]
gi|443015284|gb|ELS30309.1| Photosystem II reaction center Psb28 protein [Pseudanabaena biceps
PCC 7429]
Length = 113
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 4/99 (4%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD--ITGFYMIDEEGT 132
IQ G DE DVK+T+S+DG +A+F F P+ + + G+ I G YMIDEEG
Sbjct: 5 IQLAIGIDE-EASDVKITRSKDGDTSVAVFIFESPNCM-TGADAGNNEILGMYMIDEEGE 62
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +V+AKF+NG+ + IEA + + EW+RF+RFM R
Sbjct: 63 MVTRNVNAKFINGKSAGIEAIHKLNGQNEWERFLRFMNR 101
>gi|86609069|ref|YP_477831.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|122064930|sp|Q2JL50.1|PSB28_SYNJB RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|86557611|gb|ABD02568.1| photosystem II reaction center protein PsbW [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 104
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 8/100 (8%)
Query: 73 PTIQFIQGTDELTVP-DVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
+I+F G E VP V++ KS+ G+ G AIF F D + +I G MIDEEG
Sbjct: 2 ASIEFSPGIQE--VPTQVRVLKSKTGNRGSAIFRFE-----DLKSDTQNILGMRMIDEEG 54
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
L + ++ AKF+NG +E Y M + EWDRF+RFMER
Sbjct: 55 ELTTRNIRAKFLNGEFKALEVTYDMETEAEWDRFLRFMER 94
>gi|86606087|ref|YP_474850.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
JA-3-3Ab]
gi|122064929|sp|Q2JUM7.1|PSB28_SYNJA RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|86554629|gb|ABC99587.1| photosystem II reaction center protein PsbW [Synechococcus sp.
JA-3-3Ab]
Length = 104
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 74 TIQFIQGTDELTVP-DVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGT 132
TI+F G E VP V+L KS+ G G AIF F E + I G MIDEEG
Sbjct: 3 TIEFSPGIPE--VPTQVRLLKSKTGKRGSAIFRFEELK-----SDTQSILGMRMIDEEGE 55
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
L + ++ AKF+NG +E Y M + EW+RF+RFMER
Sbjct: 56 LTTRNIKAKFLNGEFKALEVIYDMETEAEWERFLRFMER 94
>gi|124025474|ref|YP_001014590.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. NATL1A]
gi|166989931|sp|A2C1G5.1|PSB28_PROM1 RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|123960542|gb|ABM75325.1| possible Photosystem II reaction center Psb28 protein
[Prochlorococcus marinus str. NATL1A]
Length = 113
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF++G +E P+++L ++ DG NG A++ F +P+ + + ++ID EG L
Sbjct: 10 IQFVKGENEKDQPEIRLFRNLDGKNGKAVYKFYKPTTITLTN-YKSVQRMFLIDSEGVLS 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +++ Y S ++RFMRF R
Sbjct: 69 TKKIDLSISEDHVKEVKSTYSWNSEEAFERFMRFASR 105
>gi|72381975|ref|YP_291330.1| photosystem II reaction center protein Psb28 [Prochlorococcus
marinus str. NATL2A]
gi|122064928|sp|Q46LK1.1|PSB28_PROMT RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|72001825|gb|AAZ57627.1| photosystem II reaction centre W protein [Prochlorococcus marinus
str. NATL2A]
Length = 113
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF++G +E P+++L ++ DG G A++ F +P + + ++ID EG L
Sbjct: 10 IQFVKGENEKDQPEIRLFRNLDGKKGKAVYKFYKPKTITLTN-YKSVQRMFLIDSEGVLS 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +++ Y S E++RFMRF R
Sbjct: 69 TKKIDLSISEDHVKEVKSTYNWNSEEEFERFMRFASR 105
>gi|159906341|gb|ABX10861.1| photosystem II reaction center protein W [Rhodomonas baltica]
Length = 50
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDS 114
IQFIQG +E +PDV+LT+SRDGS G A F F+ P V ++
Sbjct: 4 IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPQVLEA 43
>gi|159906348|gb|ABX10866.1| photosystem II reaction center protein W [Rhodomonas sp. CCMP1170]
Length = 50
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDS 114
IQFIQG +E +PD++LT+SRDGS G A F F+ P V ++
Sbjct: 4 IQFIQGVNEDVIPDIRLTRSRDGSTGTATFRFANPQVLEA 43
>gi|37520497|ref|NP_923874.1| photosystem II reaction center 13 kDa protein [Gloeobacter
violaceus PCC 7421]
gi|81710828|sp|Q7NM41.1|PSB28_GLOVI RecName: Full=Photosystem II reaction center Psb28 protein;
AltName: Full=Photosystem II 13 kDa protein; AltName:
Full=Photosystem II reaction center W protein
gi|35211491|dbj|BAC88869.1| psb28 [Gloeobacter violaceus PCC 7421]
Length = 99
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 76 QFIQGTDELTVPDVKLTKSR-DGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
QF++G +E + D+++ S+ D S A+ + P ++ + F M DEEG +
Sbjct: 5 QFLEGINE-EITDIRVMASKYDTSRKTALIYIAAPK-----ADLNQVMSFRMRDEEGEIT 58
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
D+ +K +NG+ +E + M S W+RF RFMER
Sbjct: 59 VRDIRSKHLNGKFIGLEISHEMGSDAAWNRFYRFMER 95
>gi|414878784|tpg|DAA55915.1| TPA: hypothetical protein ZEAMMB73_289553 [Zea mays]
Length = 151
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/27 (85%), Positives = 26/27 (96%)
Query: 120 DITGFYMIDEEGTLQSVDVSAKFVNGR 146
DITGFYMI++EG LQSVDVSAKFVNG+
Sbjct: 121 DITGFYMINDEGVLQSVDVSAKFVNGK 147
>gi|317969775|ref|ZP_07971165.1| photosystem II reaction center protein Psb28 [Synechococcus sp.
CB0205]
Length = 48
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF 112
IQF G DE VPD+++T+SRDG G AIF F +P
Sbjct: 4 IQFFPGVDEPVVPDIRMTRSRDGRTGQAIFVFDQPQAL 41
>gi|428779800|ref|YP_007171586.1| photosystem II reaction center protein Psb28 [Dactylococcopsis
salina PCC 8305]
gi|428694079|gb|AFZ50229.1| photosystem II reaction center protein Psb28 [Dactylococcopsis
salina PCC 8305]
Length = 125
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGS--NGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
PTI+F +G E V DV+L K + N + IF E +S + D E
Sbjct: 6 PTIEFFEGLPE-EVSDVRLRKEKSTGCHNVLMIFEKLEALERFNSFRQRFSKALNLTDSE 64
Query: 131 GTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMER 171
G + S +F+ G P R+E +++ WDRFMRFMER
Sbjct: 65 GKISVEPDSLRFIYGGPEGDDLQRVECSFVIEQDDHWDRFMRFMER 110
>gi|254416736|ref|ZP_05030486.1| photosystem II reaction center protein Psb28 [Coleofasciculus
chthonoplastes PCC 7420]
gi|196176476|gb|EDX71490.1| photosystem II reaction center protein Psb28 [Coleofasciculus
chthonoplastes PCC 7420]
Length = 141
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD--ITGFYMIDEE 130
P+IQF +G E + +V L ++R+ + SF + +IDEE
Sbjct: 18 PSIQFFEGLPE-ELSNVSLRRNRNSGVRSVLMSFDSLKAIEKFQSYTKRFANALLLIDEE 76
Query: 131 GTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMER 171
G + S KF+ G P R++ ++ + WDRFMRFM R
Sbjct: 77 GQISVEPSSVKFIFGGPEGDDLRRVDCEFEIERQDHWDRFMRFMHR 122
>gi|428776712|ref|YP_007168499.1| photosystem II reaction center protein Psb28 [Halothece sp. PCC
7418]
gi|428690991|gb|AFZ44285.1| photosystem II reaction center protein Psb28 [Halothece sp. PCC
7418]
Length = 123
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 73 PTIQFIQGTDELTVPDVKL--TKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
PT++F +G E + DV+L KS N + IF E +S + D E
Sbjct: 6 PTVEFFEGIPE-EISDVRLRQAKSTGIRNVLIIFEQLEALERFNSFRQRFSKALNLKDSE 64
Query: 131 GTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMER 171
GT+ S +F+ G P R+E + + WDRFMRFMER
Sbjct: 65 GTISVEPDSLRFIYGGPEGDDLQRVECTFAIDQDDHWDRFMRFMER 110
>gi|119489685|ref|ZP_01622444.1| Photosystem II protein PsbW, class I [Lyngbya sp. PCC 8106]
gi|119454422|gb|EAW35571.1| Photosystem II protein PsbW, class I [Lyngbya sp. PCC 8106]
Length = 126
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 67 ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSE-PSVFDSSGEIGDITGFY 125
+ + V +IQFI+G DE + V L K R+ + + +F +V IT +
Sbjct: 2 LVVDVSTSIQFIKGLDE-EISGVSLRKVRNSEKKIVVLTFERLQAVEQLRAYRKQITNLW 60
Query: 126 MIDEEGTLQSVDVSAKFV---NGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ DEEG ++ KF + S++E + + S ++R MRF+ R
Sbjct: 61 LRDEEGEIKVTPTGVKFFYVGDDELSKVECTFEVESEEIFERVMRFLNR 109
>gi|427737756|ref|YP_007057300.1| photosystem II reaction center protein Psb28 [Rivularia sp. PCC
7116]
gi|427372797|gb|AFY56753.1| photosystem II reaction center protein Psb28 [Rivularia sp. PCC
7116]
Length = 120
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD--SSGEIGDITGFYMIDEE 130
P+IQF G +E + +V L ++ + + + +F + + +S + + DEE
Sbjct: 4 PSIQFFAGINE-KLGNVSLRRNPNTGKRIVLMTFDQLQALEKFNSFTKKSLNTMLLTDEE 62
Query: 131 GTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMER 171
G + S KF+ G R++ + + W+RFMRFM R
Sbjct: 63 GEINVTPSSTKFIFGGDEGDELKRVDCQIEIEQDDHWERFMRFMHR 108
>gi|354567582|ref|ZP_08986751.1| photosystem II reaction center protein Psb28 [Fischerella sp.
JSC-11]
gi|353542854|gb|EHC12315.1| photosystem II reaction center protein Psb28 [Fischerella sp.
JSC-11]
Length = 121
Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD--SSGEIGDITGFYMIDEE 130
PTIQF G E + +V L + R G + + +F++ + +S + + DEE
Sbjct: 6 PTIQFFSGIYE-ELGNVSLRRGRSGKR-IILMTFNKLQALEGFNSFTKQSLNTMLLSDEE 63
Query: 131 GTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMER 171
G + S +F+ G R+E K + W+R MRFM R
Sbjct: 64 GKISITPASVQFIFGGAEGDELQRVECKLEIEQDDHWERVMRFMHR 109
>gi|298205073|emb|CBI40594.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 3 ALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRNSK 62
AL+SLA P+SHC QSR L + +WAVH SA S F+ S+ +PR + R
Sbjct: 18 ALQSLAFIPPLSHC-CKQSRL--LLDLSSWAVHRSAHSSFDSHSLCLPR-PWELMNRQKG 73
Query: 63 VSGPITMAVK 72
V P+ ++ K
Sbjct: 74 VLQPVDISAK 83
>gi|443322021|ref|ZP_21051056.1| photosystem II reaction center protein Psb28 [Gloeocapsa sp. PCC
73106]
gi|442788224|gb|ELR97922.1| photosystem II reaction center protein Psb28 [Gloeocapsa sp. PCC
73106]
Length = 125
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNG-----MAIFSFSEPSVFDSSGEI--GDITGFY 125
P+I+F G E + +V L R+ SNG M S F+S + G++
Sbjct: 6 PSIEFFVGLSE-ELSNVSL--RRNPSNGLRTVMMTFTSLKALERFNSFTQQYQGNLR--- 59
Query: 126 MIDEEGTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMER 171
+ID+EG + S KF+ G R+E + + S WDRF+RFMER
Sbjct: 60 LIDDEGEISVSPSSLKFIYGGDEGDDLKRVECGFEIGSQEHWDRFLRFMER 110
>gi|428219251|ref|YP_007103716.1| photosystem II reaction center protein Psb28 [Pseudanabaena sp. PCC
7367]
gi|427991033|gb|AFY71288.1| photosystem II reaction center protein Psb28 [Pseudanabaena sp. PCC
7367]
Length = 116
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD-ITGFYMIDEEGTL 133
+QFI+G DE + ++ L K RD + + F + ++ + I ++ DEEG +
Sbjct: 5 VQFIEGLDE-ELANISLRKRRDTEVKIVVLFFEQVRAIENIRSFTNKIDILWLRDEEGDI 63
Query: 134 QSVDVSAKFVNGRPSR-----IEAKYIMRSPREWDRFMRFMER 171
Q KF G E + + + +W+R MRF+ R
Sbjct: 64 QVTPTGIKFKFGEDEENPKGEAECSFEVSNDEDWERVMRFLHR 106
>gi|427708571|ref|YP_007050948.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7107]
gi|427361076|gb|AFY43798.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7107]
Length = 121
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 70 AVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD--ITGFYMI 127
+ P+IQF G E + +V L + + + +F++ + + +
Sbjct: 3 STTPSIQFFAGIFE-ELSNVSLRRGKVSGKRIVAMTFNQLQALEGLNSFTKPSLNSLLLS 61
Query: 128 DEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMER 171
DEEG + S +F+ G R+E ++ + W+RFMRFM+R
Sbjct: 62 DEEGEISVTPSSTRFIFGGDEGDELQRVECQFEIEQDDYWERFMRFMQR 110
>gi|37520610|ref|NP_923987.1| photosystem II 13 kDa protein [Gloeobacter violaceus PCC 7421]
gi|35211604|dbj|BAC88982.1| psb28-2 [Gloeobacter violaceus PCC 7421]
Length = 151
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 53 RLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF 112
R V + SG ++A TI+FI G E + ++KL + + N + +F F + +
Sbjct: 12 RFGAVQWLERHSGGQSLA---TIEFISGIRE-ELTEIKLRRGQTSGNRIVVFVFEKVNAM 67
Query: 113 DSSGEIGDITGFYMI--DEEGTLQSVDVSAKFV---NGRPSRIEAKYIMRSPREWDRFMR 167
D YM+ DEEG +Q + +F + +++ + + +W R R
Sbjct: 68 DKLSSFSSGGAQYMLLNDEEGDIQVTPRNLEFFYKSDDNLAKLVCTFELIDDLQWQRLRR 127
Query: 168 FMER 171
FM+R
Sbjct: 128 FMDR 131
>gi|428226137|ref|YP_007110234.1| photosystem II reaction center protein Psb28 [Geitlerinema sp. PCC
7407]
gi|427986038|gb|AFY67182.1| photosystem II reaction center protein Psb28 [Geitlerinema sp. PCC
7407]
Length = 129
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD--SSGEIGDITGFYMIDEE 130
P+++F +G E + +V L ++R+ + SF + + +S + D E
Sbjct: 6 PSVEFFEGISE-EISNVSLRRNRNTGARSVLLSFEKLRCIERFNSYRKRFSNALLLTDSE 64
Query: 131 GTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMER 171
G + S +F+ G P R++ K+ + W+RF RFM+R
Sbjct: 65 GQITVEPSSVQFIFGGPEGDDLERVDCKFEIEREEHWERFRRFMDR 110
>gi|332710692|ref|ZP_08430634.1| photosystem II reaction center protein Psb28 [Moorea producens 3L]
gi|332350528|gb|EGJ30126.1| photosystem II reaction center protein Psb28 [Moorea producens 3L]
Length = 128
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMI--DEE 130
P+IQF G E + +V L K+R + + +F + + M+ DEE
Sbjct: 6 PSIQFFDGIYE-ELSNVSLRKNRRSGARIVLMTFESLKAIEQFNSYRNRFSQSMVLTDEE 64
Query: 131 GTLQSVDVSAKFVNGRP-----SRIEAKYIMRSPREWDRFMRFMER 171
G + S KF G P + +E K + W+RFMRFM R
Sbjct: 65 GIIAMTPSSIKFRFGGPEGDELAGVECKVEIDEDDHWERFMRFMNR 110
>gi|218441419|ref|YP_002379748.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7424]
gi|218174147|gb|ACK72880.1| photosystem II reaction center protein Psb28 [Cyanothece sp. PCC
7424]
Length = 123
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 70 AVKPTIQFIQGTDELTVPDVKLTKSRDGS--NGMAIF-SFSEPSVFDS--SGEIGDITGF 124
+V P+I+F G E + +V L +S+D N + IF S F S GD+
Sbjct: 3 SVTPSIEFFDGLSE-ELSNVSLRRSKDTGVRNVLMIFKSLKAIEKFQSFTKRSYGDLR-- 59
Query: 125 YMIDEEGTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMER 171
+ID EG + S K + G R+E + + W+RFMRFM R
Sbjct: 60 -LIDSEGIISVEPSSVKLIFGGDEGDELIRVECTFEIPRDDHWERFMRFMHR 110
>gi|67923255|ref|ZP_00516740.1| Photosystem II reaction centre W protein, PsbW [Crocosphaera
watsonii WH 8501]
gi|416396680|ref|ZP_11686463.1| Photosystem II 13 kDa protein Psb28 (PsbW) [Crocosphaera watsonii
WH 0003]
gi|67854881|gb|EAM50155.1| Photosystem II reaction centre W protein, PsbW [Crocosphaera
watsonii WH 8501]
gi|357262934|gb|EHJ12007.1| Photosystem II 13 kDa protein Psb28 (PsbW) [Crocosphaera watsonii
WH 0003]
Length = 123
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 71 VKPTIQFIQG-TDELTVPDVKLTKSRDGSNGMAIF-SFSEPSVFDS--SGEIGDITGFYM 126
V P+I+F G ++EL+ ++ +K N + IF + F S + GD+ +
Sbjct: 4 VTPSIEFFVGISEELSNVSLRRSKQTGIRNVLMIFENLKSLERFRSYTNQTYGDLR---L 60
Query: 127 IDEEGTLQSVDVSAKFVNGRPSRIEAKYI-----MRSPREWDRFMRFMER 171
ID EG + S K + G E K + + WDRFMRFMER
Sbjct: 61 IDSEGEISVTPSSLKIIWGGDEGDELKEVRCGFDLEKDEHWDRFMRFMER 110
>gi|428209556|ref|YP_007093909.1| photosystem II reaction center protein Psb28 [Chroococcidiopsis
thermalis PCC 7203]
gi|428011477|gb|AFY90040.1| photosystem II reaction center protein Psb28 [Chroococcidiopsis
thermalis PCC 7203]
Length = 123
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 126 MIDEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMER 171
++DEEG +Q S KF+ G R++ + + W+RFMRFM R
Sbjct: 59 LVDEEGEIQVTPDSTKFIFGGMDGDEFQRLDCTFAIEQEDHWERFMRFMNR 109
>gi|170742947|ref|YP_001771602.1| CheA signal transduction histidine kinase [Methylobacterium sp.
4-46]
gi|168197221|gb|ACA19168.1| CheA signal transduction histidine kinase [Methylobacterium sp.
4-46]
Length = 935
Score = 37.4 bits (85), Expect = 3.6, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
Query: 42 FNGQSVHMPRMRLSPVTRNSKVSGPITMAV--KPTIQFIQGTDELTVPDVKLTKSRDGSN 99
F G + + LS VTR +V G V +P IQ+ L D R+G+
Sbjct: 672 FKGGGDALKAVPLSLVTRLEEVDGAKVEWVGGRPLIQYRGRLMPLVPVDPDQVLRREGAQ 731
Query: 100 GMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVD-VSAKFVNGRPSRIE--AKYIM 156
+ +FS E S+ + EI DI ++D E T D + + V GR + I A Y+
Sbjct: 732 ALVVFSDGERSMGLAVDEIVDIVD-EVLDVELTADRSDLIGSAVVRGRATEIVNIAHYLP 790
Query: 157 RSPREWDRFMRFMERQMVKALL 178
+ +W R R E Q + LL
Sbjct: 791 LAHDDWARAPRRKEEQAPRRLL 812
>gi|411118271|ref|ZP_11390652.1| photosystem II reaction center protein Psb28 [Oscillatoriales
cyanobacterium JSC-12]
gi|410711995|gb|EKQ69501.1| photosystem II reaction center protein Psb28 [Oscillatoriales
cyanobacterium JSC-12]
Length = 126
Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 20/114 (17%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFY----- 125
++P+IQF G E + V L ++R + + F E I F
Sbjct: 4 LQPSIQFFDGISE-ELDTVSLRRNRVSGARIVVMVFRELKA------IAQFNSFRYRFSQ 56
Query: 126 ---MIDEEGTLQSVDVSAKFVNGRPS-----RIEAKYIMRSPREWDRFMRFMER 171
+ D EG + S KF G P R+E ++ + W+RF RFMER
Sbjct: 57 CLKLTDSEGEISIEPSSVKFYFGGPEGDELERMECRFELVQDDHWERFSRFMER 110
>gi|425436021|ref|ZP_18816462.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9432]
gi|425445452|ref|ZP_18825482.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9443]
gi|389679326|emb|CCH91867.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9432]
gi|389734557|emb|CCI01806.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9443]
Length = 119
Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 73 PTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-----SSGEIGDITGFYMI 127
PTI+F G E + V L K+++ + +F + ++ GD+ +
Sbjct: 4 PTIEFFVGLSE-ELSGVSLRKNKNTGIRNVLMTFKTLKAIERFQSFTTRTYGDLR---LT 59
Query: 128 DEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMER 171
DEEG + + S KF+ G R+E + + + W+RFMRFM R
Sbjct: 60 DEEGVITVIPNSTKFIFGGDEGDEIQRVECGFEI-TDEHWERFMRFMNR 107
>gi|428215654|ref|YP_007088798.1| photosystem II reaction center protein Psb28 [Oscillatoria
acuminata PCC 6304]
gi|428004035|gb|AFY84878.1| photosystem II reaction center protein Psb28 [Oscillatoria
acuminata PCC 6304]
Length = 118
Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE-IGDITGFYMIDEEGT 132
++QFI+G DE + + L K R + F + I I + DEEG
Sbjct: 4 SVQFIKGLDE-ELGGISLRKGRTSGTKTVVLLFERVQAMEKGRSFINKIETLNLSDEEGE 62
Query: 133 LQSVDVSAKFV---NGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALLDSHLSLMQKP 188
+ + KF + S+ E + + S W+R MRF+ R D+H Q P
Sbjct: 63 ITVIPNGMKFQFVDDDNLSQAECSFEVTSDEAWERVMRFLHR-----YADAHGFEFQAP 116
>gi|425457099|ref|ZP_18836805.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9807]
gi|389801636|emb|CCI19220.1| Photosystem II reaction center psb28 protein [Microcystis
aeruginosa PCC 9807]
Length = 119
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 73 PTIQFIQG-TDELTVPDVKLTKSRDGSNGMAIF-SFSEPSVFDS--SGEIGDITGFYMID 128
PTI+F G ++EL+ ++ KS N + F + F S + GD+ + D
Sbjct: 4 PTIEFFVGLSEELSGVSLRKNKSTGIRNVLMTFKTLKAIERFQSFTTRTYGDLR---LTD 60
Query: 129 EEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMER 171
EEG + + S KF+ G R+E + + + W+RFMRFM R
Sbjct: 61 EEGVITVIPNSTKFIFGGDEGDEIQRVECGFEI-TDEHWERFMRFMNR 107
>gi|172037705|ref|YP_001804206.1| photosystem II 13 kD protein [Cyanothece sp. ATCC 51142]
gi|354553421|ref|ZP_08972727.1| photosystem II reaction center protein Psb28 [Cyanothece sp. ATCC
51472]
gi|171699159|gb|ACB52140.1| photosystem II 13 kD protein [Cyanothece sp. ATCC 51142]
gi|353554138|gb|EHC23528.1| photosystem II reaction center protein Psb28 [Cyanothece sp. ATCC
51472]
Length = 123
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGS--NGMAIF-SFSEPSVFDS--SGEIGDITGFY 125
V P+I+F G E + +V+L +S+ N + IF + F S + GD+
Sbjct: 4 VTPSIEFFVGIAE-ELSNVRLRRSKQTGIRNVLMIFENLKSLERFRSYTTQTYGDLR--- 59
Query: 126 MIDEEGTLQSVDVSAKFVNGRPSRIEAKYI-----MRSPREWDRFMRFMER 171
+ID EG + S K + G E K + + WDRFMRFMER
Sbjct: 60 LIDSEGEISVTPSSLKIIWGGDEGDELKEVRCGFEIEKDEHWDRFMRFMER 110
>gi|427729773|ref|YP_007076010.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7524]
gi|427365692|gb|AFY48413.1| photosystem II reaction center protein Psb28 [Nostoc sp. PCC 7524]
Length = 122
Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 70 AVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD--SSGEIGDITGFYMI 127
+ P+IQF G E + +V L + + + F + + +S + +
Sbjct: 3 STNPSIQFFTGIFE-ELSNVSLRREVRTGKRVVMMKFEKLKAIEGFNSFTKQSLNALLLS 61
Query: 128 DEEGTLQSVDVSAKFVNG-----RPSRIEAKYIMRSPREWDRFMRFMER 171
DEEG + S +F+ G +E K+ + WDRFMRFM R
Sbjct: 62 DEEGEISVTPSSTRFIFGGDEGDELQGVECKFEIERDDHWDRFMRFMHR 110
>gi|126659449|ref|ZP_01730583.1| photosystem II protein [Cyanothece sp. CCY0110]
gi|126619285|gb|EAZ90020.1| photosystem II protein [Cyanothece sp. CCY0110]
Length = 123
Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGS--NGMAIF-SFSEPSVFDS--SGEIGDITGFY 125
V P+I+F G E + +V+L +S+ N + IF + F S + GD+
Sbjct: 4 VTPSIEFFVGISE-ELSNVRLRRSKQTGIRNVLMIFENLKSLERFRSYTTQTYGDLR--- 59
Query: 126 MIDEEGTLQSVDVSAKFVNGRPSRIEAKYI-----MRSPREWDRFMRFMER 171
+ID EG + S K + G E K + + WDRFMRFMER
Sbjct: 60 LIDSEGEISVTPSSLKIIWGGDEGDELKEVRCGFEIEKDDHWDRFMRFMER 110
>gi|373956860|ref|ZP_09616820.1| TonB-dependent receptor plug [Mucilaginibacter paludis DSM 18603]
gi|373893460|gb|EHQ29357.1| TonB-dependent receptor plug [Mucilaginibacter paludis DSM 18603]
Length = 817
Score = 36.2 bits (82), Expect = 8.2, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 36 GSAQSPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSR 95
G S GQSV +P L+PV + K + + F++ + TV +V S
Sbjct: 92 GGPISISKGQSVQLPAFLLTPVNTSLK-----QVDITTQKAFVEQKIDRTVVNVNALISN 146
Query: 96 DGSNGMAIFSFSEPSVFDSSGEI---GDITGFYMIDEEGTLQSVDVSAKFVNGRP-SRIE 151
GSN + S + D+SG I G +ID++ T S + ++ P S+++
Sbjct: 147 TGSNALEALEQSPGVIVDASGNITFKGKTGVMVLIDDKPTYLSGENLVNYLKSIPASQLD 206
Query: 152 AKYIMRSP 159
+M +P
Sbjct: 207 QIELMPNP 214
>gi|220921683|ref|YP_002496984.1| CheA signal transduction histidine kinase [Methylobacterium
nodulans ORS 2060]
gi|219946289|gb|ACL56681.1| CheA signal transduction histidine kinase [Methylobacterium
nodulans ORS 2060]
Length = 878
Score = 36.2 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 42 FNGQSVHMPRMRLSPVTRNSKVSGPITMAV--KPTIQFIQGTDELTVPDVKLTKSRDGSN 99
F G + + LS VTR +V V +P IQ+ L D R+GS
Sbjct: 616 FKGGGDALKAVPLSLVTRLEEVDAAKVEWVGGRPLIQYRGRLMPLVPVDPDQVLRREGSQ 675
Query: 100 GMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIE--AKYIMR 157
+ +FS E S+ + EI DI + E +S + + V GR + I A Y+
Sbjct: 676 ALVVFSDGERSMGLAVDEIVDIVDEVLDVELAAERSDLIGSAVVRGRATEIVNIAHYLPL 735
Query: 158 SPREWDRFMRFMERQMVKALL 178
+ +W R R E Q+ + LL
Sbjct: 736 AHDDWARAPRRREPQVPRLLL 756
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,940,902,322
Number of Sequences: 23463169
Number of extensions: 113924459
Number of successful extensions: 300425
Number of sequences better than 100.0: 267
Number of HSP's better than 100.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 300088
Number of HSP's gapped (non-prelim): 269
length of query: 201
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 66
effective length of database: 9,191,667,552
effective search space: 606650058432
effective search space used: 606650058432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)