BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028962
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0JG75|PSB28_ORYSJ Photosystem II reaction center PSB28 protein, chloroplastic
OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2
Length = 180
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 128/170 (75%), Gaps = 4/170 (2%)
Query: 2 AALRSLALASPISHCWHPQSRSPSLSGIVTWAVHGSAQSPFNGQSVHMPRMRLSPVTRNS 61
A +++LA+ASPIS P+ SG + ++H S F G S+ R + + + R+
Sbjct: 3 AVMKALAVASPISARAQPRRCPAGSSGGPSQSLHSS----FGGVSLQCRRTKPASLHRSR 58
Query: 62 KVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDI 121
+ MA +P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDI
Sbjct: 59 PSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDI 118
Query: 122 TGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
TGFYMID+EG LQSVDVSAKFVNG+P+ IEAKY+MR+PREWDRFMRFMER
Sbjct: 119 TGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMER 168
>sp|Q8W0Y8|PSB28_ARATH Photosystem II reaction center PSB28 protein, chloroplastic
OS=Arabidopsis thaliana GN=PSB28 PE=1 SV=1
Length = 183
Score = 192 bits (489), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 129/176 (73%), Gaps = 11/176 (6%)
Query: 1 MAALRSLALASPISHCWHPQSRSPSLSGIV--TWAVHGSAQSPFNGQSVHMPRMRLSPVT 58
MA +RS+ + ++H R+ SGIV + +V S F G V +PR + P +
Sbjct: 1 MACVRSIGSLTSVNHS----QRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQ--PSS 54
Query: 59 RNS-KVSGP--ITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS 115
R + + P ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSS
Sbjct: 55 RTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 114
Query: 116 GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
GE+G+ITG YMIDEEG +QS DV+A+FVNG+P I AK+IMRSP+EWDRFMRFMER
Sbjct: 115 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMER 170
>sp|P49508|PSB28_ODOSI Photosystem II reaction center psb28 protein OS=Odontella sinensis
GN=psb28 PE=3 SV=1
Length = 115
Score = 133 bits (335), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ IQFI+G DE +PDV+LT+SRDGS G A F F P++ D S+ + G+ITG Y+ID+
Sbjct: 1 MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EGTL++ DV+A+F+NG+P IE+ YIM+SP WDRFMRFMER
Sbjct: 61 EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMER 102
>sp|Q00UI6|PSB28_OSTTA Photosystem II reaction center psb28 protein, chloroplastic
OS=Ostreococcus tauri GN=psb28 PE=3 SV=1
Length = 147
Score = 133 bits (334), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 89/127 (70%), Gaps = 5/127 (3%)
Query: 45 QSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIF 104
+S + R S R S V + +IQF++G +E VP+V+LT+S+DGSNG A F
Sbjct: 14 RSFNASTKRFSKSARRSVV---VRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFF 70
Query: 105 SFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDR 164
FS+P VF++ GDITG ++ DEEG + +VDV+AKFVNG+P+ IEA+Y+M++ +W+R
Sbjct: 71 IFSDPDVFENGQ--GDITGMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNR 128
Query: 165 FMRFMER 171
FMRFMER
Sbjct: 129 FMRFMER 135
>sp|A0T0H5|PSB28_PHATC Photosystem II reaction center psb28 protein OS=Phaeodactylum
tricornutum (strain CCAP 1055/1) GN=psb28 PE=3 SV=1
Length = 115
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 79/102 (77%), Gaps = 1/102 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDE 129
++ IQFI+G DE +PDV+LT+S+DGS G A F F P++ D ++ + G+ITG Y+IDE
Sbjct: 1 MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60
Query: 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EG L++ DV+A+FVNG+P IE+ YIM+SP WDRFMRFMER
Sbjct: 61 EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMER 102
>sp|O78418|PSB28_GUITH Photosystem II reaction center psb28 protein OS=Guillardia theta
GN=psb28 PE=3 SV=1
Length = 116
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 78/104 (75%), Gaps = 4/104 (3%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMI 127
MAV IQFIQG +E +PDV+LT+SRDGS G A F F+ P V ++ + G+ITG Y+I
Sbjct: 1 MAV---IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLI 57
Query: 128 DEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
DEEG L + DV+A+FVNG+P IEA YIM+S +WDRFMRFMER
Sbjct: 58 DEEGQLVTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMER 101
>sp|A0T0W9|PSB28_THAPS Photosystem II reaction center psb28 protein OS=Thalassiosira
pseudonana GN=psb28 PE=3 SV=1
Length = 114
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTL 133
IQFI+G DE +PDV+LT+SRDGS G A F F ++ + S + G+ITG YMIDEEG L
Sbjct: 5 IQFIKGIDEKVLPDVRLTRSRDGSTGTATFLFKNANLINKSLALNGEITGMYMIDEEGIL 64
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
++ DVSA+FVNG+P +E+ YIM+SP WDRFMRFMER
Sbjct: 65 ETRDVSARFVNGKPQAVESIYIMKSPEAWDRFMRFMER 102
>sp|P51347|PSB28_PORPU Photosystem II reaction center psb28 protein OS=Porphyra purpurea
GN=psb28 PE=3 SV=1
Length = 115
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGT 132
TIQFIQG +E VPDV+LT+SRDGS G A F F+ P + D+S + G+ITG Y++D EG
Sbjct: 3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQ 62
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + DV+AKF+NG+P IEA ++++SP +WDRFMRFMER
Sbjct: 63 IITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMER 101
>sp|Q1XDE0|PSB28_PORYE Photosystem II reaction center psb28 protein OS=Porphyra yezoensis
GN=psb28 PE=3 SV=1
Length = 115
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGT 132
TIQFIQG +E VPDV+LT+SRDGS G A F F+ P + D+S + G+ITG Y++D EG
Sbjct: 3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQ 62
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + DV+AKF+NG+P IEA ++++SP +WDRFMRFMER
Sbjct: 63 IITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFMER 101
>sp|P48264|PSB28_CYAPA Photosystem II reaction center psb28 protein OS=Cyanophora paradoxa
GN=psb28 PE=3 SV=1
Length = 112
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 74/97 (76%), Gaps = 2/97 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQFIQG DE +PDVKL++S+DG+NG+A F F +P+VFD G+ITG Y+IDEEG L
Sbjct: 4 IQFIQGVDEEAIPDVKLSRSQDGANGIAKFYFDKPTVFDVYQ--GEITGLYLIDEEGELS 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ V AKF+NG+P IEA YIM + EW+RF+RFMER
Sbjct: 62 TRTVYAKFINGKPQSIEASYIMNNREEWERFIRFMER 98
>sp|Q6B8Z7|PSB28_GRATL Photosystem II reaction center psb28 protein OS=Gracilaria
tenuistipitata var. liui GN=psb28 PE=3 SV=1
Length = 114
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 4/104 (3%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGE-IGDITGFYMI 127
MAV IQFI+G +E V DV LT+SRDGS G A F F+ P + S E GDITG Y+
Sbjct: 1 MAV---IQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILKSGMEDKGDITGMYLK 57
Query: 128 DEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
D+EG L + DVSAKF+NG+P +EA YI++SP+EWDRFMRFME+
Sbjct: 58 DDEGELMTRDVSAKFINGKPQAVEAIYIIKSPQEWDRFMRFMEK 101
>sp|Q5MZB9|PSB28_SYNP6 Photosystem II reaction center Psb28 protein OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psb28
PE=3 SV=1
Length = 112
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 73/98 (74%), Gaps = 3/98 (3%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTL 133
IQF +G DE VPDV+LT+SRDG NG A F F EP GE+ DITG Y++D+EG L
Sbjct: 5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGEL 62
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKF+NG+P+ +EA Y+MRSP EWDRFMRFM+R
Sbjct: 63 ATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFMQR 100
>sp|Q31ML0|PSB28_SYNE7 Photosystem II reaction center Psb28 protein OS=Synechococcus
elongatus (strain PCC 7942) GN=psb28 PE=3 SV=1
Length = 112
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 73/98 (74%), Gaps = 3/98 (3%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTL 133
IQF +G DE VPDV+LT+SRDG NG A F F EP GE+ DITG Y++D+EG L
Sbjct: 5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGEL 62
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKF+NG+P+ +EA Y+MRSP EWDRFMRFM+R
Sbjct: 63 ATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFMQR 100
>sp|Q8DLJ8|PSB28_THEEB Photosystem II reaction center Psb28 protein OS=Thermosynechococcus
elongatus (strain BP-1) GN=psb28 PE=3 SV=1
Length = 116
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 69 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMID 128
M IQFI+G +E VPDV+LT++RDGS+G A+F F P + G + ++TG YM+D
Sbjct: 1 MGAMAEIQFIRGINEEVVPDVRLTRARDGSSGQAMFYFDNPKIV-QEGNL-EVTGMYMVD 58
Query: 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
EEG + + DV+AKF+NG+P IEA Y MRSP+EWDRF+RFM+R
Sbjct: 59 EEGEIVTRDVNAKFINGQPVAIEATYTMRSPQEWDRFIRFMDR 101
>sp|Q85G21|PSB28_CYAME Photosystem II reaction center psb28 protein OS=Cyanidioschyzon
merolae GN=psb28 PE=3 SV=1
Length = 109
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 70/98 (71%), Gaps = 3/98 (3%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQFIQG DE +P V+LT+SRDG G A+F F +P + GEI TG YMIDEEG +
Sbjct: 3 SIQFIQGVDEDIIPTVRLTRSRDGQTGTAVFRFVQPKLLQQQGEI---TGMYMIDEEGEI 59
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKFVNG+P IEA Y+M++ + W+RFMRFM R
Sbjct: 60 VTREVQAKFVNGQPQIIEALYVMKNAQAWERFMRFMNR 97
>sp|B0CE32|PSB28_ACAM1 Photosystem II reaction center Psb28 protein OS=Acaryochloris
marina (strain MBIC 11017) GN=psb28 PE=3 SV=1
Length = 111
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 73/98 (74%), Gaps = 2/98 (2%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
IQFI+G DE +PDV+LT+++DGS+G AIF F P++ G++ ++ G Y+ DEEG L
Sbjct: 4 AIQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLI-QEGKL-EVMGMYLQDEEGEL 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
++DVSAKFVNG+P IEA Y M+S EWDRFMRFM R
Sbjct: 62 TTLDVSAKFVNGKPHAIEANYDMKSEEEWDRFMRFMNR 99
>sp|B2J5G7|PSB28_NOSP7 Photosystem II reaction center Psb28 protein OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=psb28 PE=3 SV=1
Length = 113
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE+ +P+V+LT+SR G +G A F F+ P + D G DITG Y+ DEEG +
Sbjct: 4 IQFSRGLDEVVIPEVRLTRSRTGDSGTATFIFTNPKILDQ-GSTEDITGMYLSDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKFVNG+P +EA Y+M+S +EWDRFMRFMER
Sbjct: 63 TREVKAKFVNGKPEALEALYVMKSAQEWDRFMRFMER 99
>sp|B7K2E0|PSB28_CYAP8 Photosystem II reaction center Psb28 protein OS=Cyanothece sp.
(strain PCC 8801) GN=psb28 PE=3 SV=1
Length = 114
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +PDV+LT+SR G +G A F F EPS+F+S ++TG Y++DEEG +
Sbjct: 4 IQFSRGVAEPVIPDVRLTRSRSGQSGTATFYFREPSIFNSES-TDEVTGMYLVDEEGEIT 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+ + IEA IMRSP EWDRFMRFMER
Sbjct: 63 TTEVKGKFINGKATDIEAILIMRSPEEWDRFMRFMER 99
>sp|Q9TLZ2|PSB28_CYACA Photosystem II reaction center psb28 protein OS=Cyanidium caldarium
GN=psb28 PE=3 SV=1
Length = 115
Score = 116 bits (291), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 73/100 (73%), Gaps = 3/100 (3%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVF---DSSGEIGDITGFYMIDEEG 131
IQFI+G DE TVP+++LT+SRDG+ G AIFSF P+VF SS G+ITG Y+ D+EG
Sbjct: 4 IQFIKGIDEQTVPEIRLTRSRDGNTGTAIFSFINPTVFLLHSSSQNYGEITGMYLQDDEG 63
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
L + +V+A FVNG+P +EA Y++R+ WDR MRF+ +
Sbjct: 64 ELSTRNVTANFVNGKPKAVEAVYLIRNKSGWDRLMRFINK 103
>sp|Q3MFL9|PSB28_ANAVT Photosystem II reaction center Psb28 protein OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=psb28 PE=3 SV=1
Length = 111
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G G A F F+ P + D G DITG Y+IDEEG +
Sbjct: 4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KFVNGRP +EA Y+M+S +EW+RF+RFMER
Sbjct: 63 TREVKGKFVNGRPEGVEAVYVMKSAQEWERFIRFMER 99
>sp|Q8YYP5|PSB28_NOSS1 Photosystem II reaction center Psb28 protein OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=psb28 PE=3 SV=1
Length = 111
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE +P+V+LT+SR G G A F F+ P + D G DITG Y+IDEEG +
Sbjct: 4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NGRP +EA Y+M+S +EW+RF+RFMER
Sbjct: 63 TREVKGKFINGRPEGLEAVYVMKSAQEWERFIRFMER 99
>sp|Q112E8|PSB28_TRIEI Photosystem II reaction center Psb28 protein OS=Trichodesmium
erythraeum (strain IMS101) GN=psb28 PE=3 SV=2
Length = 113
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TIQFIQG DE P+V+LT+SR G+ G A F +P +ITG YMIDEEG +
Sbjct: 3 TIQFIQGIDEEVTPEVRLTRSRSGNQGTATLIFEDPKAL-GQDVTQEITGMYMIDEEGQI 61
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFME 170
S DV A+FVNG+P +E Y+M++ +EW+RFMRFME
Sbjct: 62 TSRDVKARFVNGQPKFLEGLYVMKTKQEWERFMRFME 98
>sp|A9B9Y9|PSB28_PROM4 Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus (strain MIT 9211) GN=psb28 PE=3 SV=1
Length = 117
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
+ P IQF +G DE +P+++LT+S+DG G AIF F +P S GDITG +ID+E
Sbjct: 6 INPAIQFYEGVDETAIPEIRLTRSKDGKTGQAIFVFQKPDAL-SEATTGDITGMTLIDDE 64
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALL 178
G L++ +V A+F+NG PS IEA Y ++ +++RFMRF ER K L
Sbjct: 65 GALKTREVKARFLNGEPSAIEATYTWKTESDFERFMRFAERYAKKNGL 112
>sp|B1XL01|PSB28_SYNP2 Photosystem II reaction center Psb28 protein OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=psb28 PE=3 SV=1
Length = 111
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF QG +E VP ++LT+S DGS G A+FSF +P+ + +ITG Y+IDEEG +
Sbjct: 4 IQFSQGVNEPEVPGIRLTRSPDGSTGTAVFSFEDPAAL-AQESTDEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V AKF +G+P IEA+ +MRS EWDRFMRFMER
Sbjct: 63 TREVKAKFYDGKPRIIEARLVMRSTAEWDRFMRFMER 99
>sp|Q55356|PSB28_SYNY3 Photosystem II reaction center Psb28 protein OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=psb28 PE=1 SV=3
Length = 112
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP+V+L+KS++G +GMA F F EP++ + DITG Y+ID+EG +
Sbjct: 4 IQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTIL-AKESTDDITGMYLIDDEGEII 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NGRP+ IEA I+ S EWDRFMRFMER
Sbjct: 63 TREVKGKFINGRPTAIEATVILNSQPEWDRFMRFMER 99
>sp|B1WXW2|PSB28_CYAA5 Photosystem II reaction center Psb28 protein OS=Cyanothece sp.
(strain ATCC 51142) GN=psb28 PE=3 SV=1
Length = 111
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VP+V+LT+++ G++G A F F P++ D+ DITG Y++DEEG +
Sbjct: 4 IQFSRGVSEPVVPEVRLTRAKSGNSGTATFRFESPTILDAES-TDDITGMYLVDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V KF+NG+P+ +EA IM S EWDRFMRFMER
Sbjct: 63 TREVKGKFINGKPTSVEAILIMNSQDEWDRFMRFMER 99
>sp|A5GLG6|PSB28_SYNPW Photosystem II reaction center Psb28 protein OS=Synechococcus sp.
(strain WH7803) GN=psb28 PE=3 SV=1
Length = 129
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +GTDE VPD++LT+SRDG G A F F +P + +G+I G +M+DEEG
Sbjct: 6 KAAIQFFRGTDEPVVPDIRLTRSRDGRTGQATFIFEQPEAL-APETLGNIAGMWMVDEEG 64
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
L + +V+ KFVNG+PS +EA Y ++ ++++RFMRF ER
Sbjct: 65 ELVTREVNGKFVNGKPSALEATYTWKTEQDFERFMRFAER 104
>sp|B8HK72|PSB28_CYAP4 Photosystem II reaction center Psb28 protein OS=Cyanothece sp.
(strain PCC 7425 / ATCC 29141) GN=psb28 PE=3 SV=1
Length = 110
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 70/97 (72%), Gaps = 2/97 (2%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF++G +E VPDV+LT+++DG+ G A+F F P + G + +I G YM+DEEG +
Sbjct: 4 IQFVRGVNEGVVPDVRLTRAKDGNTGRAVFYFDNPQLV-QEGNL-EIMGMYMVDEEGEIV 61
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+AKF+NG+ + IEA Y +RS EWDRF+RFM R
Sbjct: 62 TREVNAKFINGKATAIEAIYTIRSAPEWDRFIRFMNR 98
>sp|B7K9Y7|PSB28_CYAP7 Photosystem II reaction center Psb28 protein OS=Cyanothece sp.
(strain PCC 7424) GN=psb28 PE=3 SV=1
Length = 111
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E +P ++LT+SR G +G A F F P++F + + ++TG Y+ID EG +
Sbjct: 4 IQFARGLVEDAIPTIRLTRSRTGDSGTATFYFESPNIF-ADEQTQEVTGMYLIDSEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
S +V KF+NG+P IEA IM SP EW+RFMRFMER
Sbjct: 63 SREVKGKFINGKPHAIEAILIMNSPDEWERFMRFMER 99
>sp|A2CA72|PSB28_PROM3 Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus (strain MIT 9303) GN=psb28 PE=3 SV=1
Length = 117
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQFI+G DE VPD+KLT+S DG G A+F F +P + G ITG +M+DEEG L
Sbjct: 10 IQFIRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMLDEEGELV 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+A+FVNG+PS +E YI +S +++RFMRF +R
Sbjct: 69 TREVNARFVNGQPSALEVTYIWKSEEDFERFMRFAKR 105
>sp|Q7VCG9|PSB28_PROMA Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=psb28 PE=3
SV=1
Length = 117
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
TI+F++G DE ++P+++LT+SRDG G A F+F EP S+ + G I G M DEEG L
Sbjct: 9 TIRFLEGIDETSIPEIRLTRSRDGRTGQAFFTFEEPQAL-SAVKDGSIQGMSMFDEEGEL 67
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
++ +V A+FVNG PS +EA Y+ +S ++ RFMRF +R
Sbjct: 68 KTREVKARFVNGTPSALEATYVWKSESDFQRFMRFAKR 105
>sp|B0JGJ5|PSB28_MICAN Photosystem II reaction center Psb28 protein OS=Microcystis
aeruginosa (strain NIES-843) GN=psb28 PE=3 SV=1
Length = 112
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G E VPD++L++++ G G A F F +P++ + +ITG Y+IDEEG +
Sbjct: 4 IQFSKGLKEPVVPDIRLSRTKTGEKGSAEFYFKQPTILGDQ-QTEEITGMYLIDEEGEIV 62
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ V KF+NG+P IEA I SP EWDRFMRFMER
Sbjct: 63 TTKVKGKFINGKPMAIEATVIFNSPAEWDRFMRFMER 99
>sp|Q7TV11|PSB28_PROMM Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus (strain MIT 9313) GN=psb28 PE=3 SV=1
Length = 117
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +G DE VPD+KLT+S DG G A+F F +P + G ITG +MIDEEG L
Sbjct: 10 IQFTRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMIDEEGELV 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+A+FVNG+PS +E YI +S +++RFMRF +R
Sbjct: 69 TREVNARFVNGKPSALEVTYIWKSEADFERFMRFAKR 105
>sp|Q7U7C0|PSB28_SYNPX Photosystem II reaction center Psb28 protein OS=Synechococcus sp.
(strain WH8102) GN=psb28 PE=3 SV=1
Length = 127
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 71 VKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE 130
K +IQF +G DE VPD++LT+SRDG G A F F +P+ + +GDITG +M+DEE
Sbjct: 2 AKASIQFFRGVDEPVVPDIRLTRSRDGLTGQATFRFEQPAAI-APETMGDITGMWMVDEE 60
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
G + + +++ KFVNG S +EA Y +S ++++RFMRF +R
Sbjct: 61 GEMVTREINGKFVNGTASALEAVYSWKSVQDFERFMRFAQR 101
>sp|Q3AKD0|PSB28_SYNSC Photosystem II reaction center Psb28 protein OS=Synechococcus sp.
(strain CC9605) GN=psb28 PE=3 SV=1
Length = 127
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
K IQF +G +E VPD++LT+SRDG G A F F +P+ + +GDITG +M+DEEG
Sbjct: 3 KAAIQFFRGVNEPVVPDIRLTRSRDGRTGQATFRFEQPAAI-APETMGDITGMWMVDEEG 61
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +V+ KFVNG S +EA Y +S ++++RFMRF +R
Sbjct: 62 EMVTREVNGKFVNGTASALEAVYSWKSEQDFERFMRFAQR 101
>sp|Q0I9T4|PSB28_SYNS3 Photosystem II reaction center Psb28 protein OS=Synechococcus sp.
(strain CC9311) GN=psb28 PE=3 SV=1
Length = 128
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 71/101 (70%), Gaps = 3/101 (2%)
Query: 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD-ITGFYMIDEE 130
K IQF++G DE VPD+++T+SRDG G AIF F +P + E+ + ITG +M+DEE
Sbjct: 6 KAVIQFLRGVDEPVVPDIRVTRSRDGRTGQAIFVFEQPEAL--APEVMEAITGMFMLDEE 63
Query: 131 GTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
G L + +V+ KFVNG+ S +EA Y +S ++++RFMRF +R
Sbjct: 64 GMLVTREVNGKFVNGKASALEATYTWKSEQDFERFMRFAQR 104
>sp|Q3AXG3|PSB28_SYNS9 Photosystem II reaction center Psb28 protein OS=Synechococcus sp.
(strain CC9902) GN=psb28 PE=3 SV=1
Length = 131
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 74 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133
+IQF +G DE VPD++LT+SRDG G A F F +P + G+I G +M+DEEG +
Sbjct: 9 SIQFFRGVDEPVVPDIRLTRSRDGRTGQATFVFEQPQAL-APETFGNIGGMWMVDEEGEM 67
Query: 134 QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ +V+ KFVNG PS +EA Y ++ +++RFMRF +R
Sbjct: 68 VTREVNGKFVNGIPSALEATYTWKTEEDFERFMRFAQR 105
>sp|Q31B11|PSB28_PROM9 Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus (strain MIT 9312) GN=psb28 PE=3 SV=1
Length = 117
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG++G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTSGQALFQFEKPQALSSITD-GEITGMRMIDAEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +EA YI +S ++DRFMRF
Sbjct: 68 TREVKVKFVDGEPIFLEAVYIWKSTSDFDRFMRF 101
>sp|A8G4P8|PSB28_PROM2 Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus (strain MIT 9215) GN=psb28 PE=3 SV=1
Length = 117
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +EA YI ++ ++DRFMRF
Sbjct: 68 TKEVKVKFVDGEPIYLEAVYIWKNSSDFDRFMRF 101
>sp|A3PCT1|PSB28_PROM0 Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus (strain MIT 9301) GN=psb28 PE=3 SV=1
Length = 117
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +EA YI ++ ++DRFMRF
Sbjct: 68 TREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRF 101
>sp|A2BR07|PSB28_PROMS Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus (strain AS9601) GN=psb28 PE=3 SV=1
Length = 117
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDTEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +EA YI ++ ++DRFMRF
Sbjct: 68 TREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRF 101
>sp|A2BWQ5|PSB28_PROM5 Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus (strain MIT 9515) GN=psb28 PE=3 SV=1
Length = 117
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GT+E VP+++LT+ DG+ G AIF F +P S E G+ITG MID EG +
Sbjct: 9 IQFYEGTNEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSITE-GEITGMRMIDSEGEIM 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +E YI ++ ++DRFMRF
Sbjct: 68 TREVKVKFVDGEPMYLEGTYIWKTKSDFDRFMRF 101
>sp|Q7TU94|PSB28_PROMP Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4)
GN=psb28 PE=3 SV=1
Length = 117
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF +GTDE VP+++LT+ DG+ G AIF F +P S + G+ITG MID EG +
Sbjct: 9 IQFYEGTDEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSVAD-GEITGMRMIDAEGEIL 67
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRF 168
+ +V KFV+G P +E YI ++ ++DRFMRF
Sbjct: 68 TREVKVKFVDGEPMFLEGTYIWKTKSDFDRFMRF 101
>sp|Q2JL50|PSB28_SYNJB Photosystem II reaction center Psb28 protein OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=psb28 PE=3 SV=1
Length = 104
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 8/100 (8%)
Query: 73 PTIQFIQGTDELTVP-DVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEG 131
+I+F G E VP V++ KS+ G+ G AIF F D + +I G MIDEEG
Sbjct: 2 ASIEFSPGIQE--VPTQVRVLKSKTGNRGSAIFRFE-----DLKSDTQNILGMRMIDEEG 54
Query: 132 TLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
L + ++ AKF+NG +E Y M + EWDRF+RFMER
Sbjct: 55 ELTTRNIRAKFLNGEFKALEVTYDMETEAEWDRFLRFMER 94
>sp|Q2JUM7|PSB28_SYNJA Photosystem II reaction center Psb28 protein OS=Synechococcus sp.
(strain JA-3-3Ab) GN=psb28 PE=3 SV=1
Length = 104
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 74 TIQFIQGTDELTVP-DVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGT 132
TI+F G E VP V+L KS+ G G AIF F E + I G MIDEEG
Sbjct: 3 TIEFSPGIPE--VPTQVRLLKSKTGKRGSAIFRFEELK-----SDTQSILGMRMIDEEGE 55
Query: 133 LQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
L + ++ AKF+NG +E Y M + EW+RF+RFMER
Sbjct: 56 LTTRNIKAKFLNGEFKALEVIYDMETEAEWERFLRFMER 94
>sp|A2C1G5|PSB28_PROM1 Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus (strain NATL1A) GN=psb28 PE=3 SV=1
Length = 113
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF++G +E P+++L ++ DG NG A++ F +P+ + + ++ID EG L
Sbjct: 10 IQFVKGENEKDQPEIRLFRNLDGKNGKAVYKFYKPTTITLTN-YKSVQRMFLIDSEGVLS 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +++ Y S ++RFMRF R
Sbjct: 69 TKKIDLSISEDHVKEVKSTYSWNSEEAFERFMRFASR 105
>sp|Q46LK1|PSB28_PROMT Photosystem II reaction center Psb28 protein OS=Prochlorococcus
marinus (strain NATL2A) GN=psb28 PE=3 SV=1
Length = 113
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
IQF++G +E P+++L ++ DG G A++ F +P + + ++ID EG L
Sbjct: 10 IQFVKGENEKDQPEIRLFRNLDGKKGKAVYKFYKPKTITLTN-YKSVQRMFLIDSEGVLS 68
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
+ + +++ Y S E++RFMRF R
Sbjct: 69 TKKIDLSISEDHVKEVKSTYNWNSEEEFERFMRFASR 105
>sp|Q7NM41|PSB28_GLOVI Photosystem II reaction center Psb28 protein OS=Gloeobacter
violaceus (strain PCC 7421) GN=psb28 PE=3 SV=1
Length = 99
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 76 QFIQGTDELTVPDVKLTKSR-DGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134
QF++G +E + D+++ S+ D S A+ + P ++ + F M DEEG +
Sbjct: 5 QFLEGINE-EITDIRVMASKYDTSRKTALIYIAAPK-----ADLNQVMSFRMRDEEGEIT 58
Query: 135 SVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMER 171
D+ +K +NG+ +E + M S W+RF RFMER
Sbjct: 59 VRDIRSKHLNGKFIGLEISHEMGSDAAWNRFYRFMER 95
>sp|Q18GQ9|RFCL_HALWD Replication factor C large subunit OS=Haloquadratum walsbyi (strain
DSM 16790) GN=rfcL PE=3 SV=1
Length = 516
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 64 SGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITG 123
SG + A+K ++G+D +TV DVK T RD M +FSF + + + + E +
Sbjct: 196 SGDLRAAIKDLQTTVEGSDRITVDDVK-TGGRD--RAMGLFSFLDSVLKEDAAEEA-LQN 251
Query: 124 FYMIDE 129
Y +DE
Sbjct: 252 SYDVDE 257
>sp|B9IVC1|TRMFO_BACCQ Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO
OS=Bacillus cereus (strain Q1) GN=trmFO PE=3 SV=1
Length = 434
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 76 QFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITG---FYMIDEEGT 132
++++ +TV + ++TK +G +A + P D S ++ ++TG FY D
Sbjct: 108 EYVKNHPNVTVVNEEITKIPEGPTVIATGPLTSP---DLSAQLKELTGEDYFYFYDAAAP 164
Query: 133 L---QSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFME 170
+ S+D++ ++ R + EA Y + P + F RF E
Sbjct: 165 IVEKDSIDMNKVYLKSRYDKGEAAY-LNCPMTEEEFDRFYE 204
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,822,735
Number of Sequences: 539616
Number of extensions: 2654851
Number of successful extensions: 6926
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6832
Number of HSP's gapped (non-prelim): 57
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)