Query 028962
Match_columns 201
No_of_seqs 93 out of 102
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 08:14:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kvo_A Photosystem II reaction 100.0 1.8E-65 6.2E-70 405.3 12.6 113 72-185 1-113 (120)
2 3i9v_7 NADH-quinone oxidoreduc 81.9 0.68 2.3E-05 37.1 2.2 33 160-192 11-51 (129)
3 3uv0_A Mutator 2, isoform B; F 74.6 7.4 0.00025 29.9 6.0 68 70-148 2-71 (102)
4 3lmb_A Uncharacterized protein 48.6 36 0.0012 26.8 5.7 68 130-198 83-161 (165)
5 1ynx_A Replication factor-A pr 46.3 15 0.00051 26.8 3.0 19 118-136 38-56 (114)
6 3t8b_A 1,4-dihydroxy-2-naphtho 38.3 31 0.001 29.8 4.2 28 86-115 54-81 (334)
7 3bbo_W Ribosomal protein L24; 37.9 6.8 0.00023 33.0 0.0 68 40-108 18-95 (191)
8 1jmc_A Protein (replication pr 33.0 42 0.0014 26.6 3.9 19 118-136 42-60 (246)
9 2kt5_A RNA and export factor-b 31.6 1.2E+02 0.0043 20.9 5.8 27 86-112 62-89 (124)
10 3smz_A Protein raver-1, ribonu 30.9 52 0.0018 25.7 4.1 65 39-112 159-239 (284)
11 2dnn_A RNA-binding protein 12; 30.6 14 0.00048 26.6 0.6 35 75-112 34-69 (109)
12 2pqf_A Poly [ADP-ribose] polym 29.5 46 0.0016 26.3 3.6 39 139-177 28-67 (198)
13 1yel_A AT1G16640; CESG, protei 27.6 98 0.0034 21.9 4.7 46 122-185 40-85 (104)
14 3bdk_A D-mannonate dehydratase 26.6 23 0.00077 31.5 1.4 36 157-192 190-228 (386)
15 2hgm_A HNRPF protein, heteroge 25.9 17 0.00059 27.1 0.5 35 76-112 61-97 (126)
16 3eur_A Uncharacterized protein 25.9 48 0.0016 22.9 2.7 20 119-138 112-131 (142)
17 3a0s_A Sensor protein; PAS-fol 24.9 54 0.0019 18.7 2.5 25 122-146 3-27 (96)
18 3e1y_E Eukaryotic peptide chai 24.7 77 0.0026 25.1 4.1 35 95-129 153-187 (204)
19 3s7r_A Heterogeneous nuclear r 24.6 63 0.0022 20.8 3.0 27 86-112 38-66 (87)
20 3v67_A Sensor protein CPXA; PA 24.1 28 0.00096 27.0 1.4 16 123-138 57-72 (138)
21 3hcz_A Possible thiol-disulfid 23.5 1.2E+02 0.004 20.4 4.3 35 119-172 110-144 (148)
22 4g2e_A Peroxiredoxin; redox pr 23.5 52 0.0018 23.9 2.7 16 123-138 121-136 (157)
23 4f02_A Polyadenylate-binding p 23.2 30 0.001 26.5 1.3 37 76-112 106-156 (213)
24 2cq3_A RNA-binding protein 9; 23.0 32 0.0011 23.1 1.3 27 86-112 42-68 (103)
25 2div_A TRNA selenocysteine ass 22.8 74 0.0025 21.0 3.1 27 86-112 36-65 (99)
26 2err_A Ataxin-2-binding protei 22.8 44 0.0015 23.1 2.0 27 86-112 56-82 (109)
27 3ucg_A Polyadenylate-binding p 22.3 81 0.0028 20.2 3.2 27 86-112 33-61 (89)
28 1wf1_A RNA-binding protein RAL 22.2 1.6E+02 0.0055 19.9 4.9 21 86-112 55-75 (110)
29 1wez_A HnRNP H', FTP-3, hetero 21.8 53 0.0018 22.7 2.3 34 76-112 34-68 (102)
30 2db1_A Heterogeneous nuclear r 21.8 34 0.0012 24.2 1.3 37 76-112 36-74 (118)
31 2cqi_A Nucleolysin TIAR; RNA r 21.7 33 0.0011 23.0 1.2 27 86-112 42-68 (103)
32 1ews_A RK-1 defensin, alpha-de 21.6 29 0.00098 21.8 0.8 13 188-200 18-30 (32)
33 3lhe_A GNTR family transcripti 21.2 1.1E+02 0.0037 21.8 3.9 30 129-158 32-61 (143)
34 1fxl_A Paraneoplastic encephal 20.9 1.1E+02 0.0038 21.1 3.9 62 39-112 66-143 (167)
35 3smj_A Poly [ADP-ribose] polym 20.9 87 0.003 24.9 3.7 30 148-177 35-64 (193)
36 3ubh_A Neural-cadherin; cell a 20.5 61 0.0021 27.9 2.9 55 81-136 4-60 (419)
No 1
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=100.00 E-value=1.8e-65 Score=405.29 Aligned_cols=113 Identities=47% Similarity=0.800 Sum_probs=109.5
Q ss_pred eceeEeecCCCCCCCCCeeEEeccCCCcceEEEEEcCCcccccCCccCceeeEEEEecCceEEeEeceeeEEcCccceEE
Q 028962 72 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIE 151 (201)
Q Consensus 72 ~asIQFi~GidEe~iPdVrLTRSrdG~~GtA~F~Fe~Pkal~s~t~~g~ITGMyLIDEEGeI~Tr~V~aKFvNGkP~~IE 151 (201)
+|+||||+||||++||||||||||||++|+|+|+|++|++|++++ .++|||||||||||||+|+||++|||||||++||
T Consensus 1 ~a~IQF~~Gi~E~~vpdVrLtRsrdg~~g~A~f~F~~p~al~~~~-~~~itgm~LiDeEGei~t~~v~aKFvnGkp~~iE 79 (120)
T 2kvo_A 1 MAEIQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTILAKES-TDDITGMYLIDDEGEIITREVKGKFINGRPTAIE 79 (120)
T ss_dssp CCEEESSSSCCCCCCCEEEEEECTTSCSEEEEEEEESCGGGTSSC-GGGCCCEEEECSSCEEEECCEEEEEETTEEEEEE
T ss_pred CCcEEEecCCCCCcCCceEEEEcccCCccEEEEEECCchhccccc-cCcceeEEEEccCccEEEEecceEEECCceeEEE
Confidence 489999999999999999999999999999999999999999884 6999999999999999999999999999999999
Q ss_pred EEEEeCCchhhHHHHHHHHhhhHhcCCchhhhhc
Q 028962 152 AKYIMRSPREWDRFMRFMERQMVKALLDSHLSLM 185 (201)
Q Consensus 152 a~y~m~s~~eWdRFMRFMeRYAe~NGLg~~~~~~ 185 (201)
|+|+|+|+++||||||||||||++|||+|+++..
T Consensus 80 a~y~m~s~~~WdRFMRFMeRYA~~Ngl~f~k~~~ 113 (120)
T 2kvo_A 80 ATVILNSQPEWDRFMRFMERYGAENGLGFSKSEL 113 (120)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHCCSSSCSTTT
T ss_pred EEEEECCHHHHHHHHHHHHHHHHhcCCccccCch
Confidence 9999999999999999999999999999998754
No 2
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=81.92 E-value=0.68 Score=37.09 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHhhhHhcCCchhhhh--------cccceecc
Q 028962 160 REWDRFMRFMERQMVKALLDSHLSL--------MQKPYALF 192 (201)
Q Consensus 160 ~eWdRFMRFMeRYAe~NGLg~~~~~--------~~~~~~~~ 192 (201)
+.|--.|-+|+-||.++|+.|..-+ |.+||-|=
T Consensus 11 ~aWvell~Wl~eyA~~~g~~FekeaDFPDyIYRMeRPydLP 51 (129)
T 3i9v_7 11 EAWVELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLP 51 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECHHHHSCCSSCCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCceeecccccHHHHhhcCcccCC
Confidence 5799999999999999999997654 88898774
No 3
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=74.58 E-value=7.4 Score=29.93 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=39.5
Q ss_pred ceeceeEeecCCCCCC-CCCeeEEeccCCCcceEEEEEcCCcccccCCccCceeeEEEEecCceEEeEeceee-EEcCcc
Q 028962 70 AVKPTIQFIQGTDELT-VPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAK-FVNGRP 147 (201)
Q Consensus 70 ~~~asIQFi~GidEe~-iPdVrLTRSrdG~~GtA~F~Fe~Pkal~s~t~~g~ITGMyLIDEEGeI~Tr~V~aK-FvNGkP 147 (201)
|+..+|-| +|-+-.+ -|+..++=.|| -++.|.-++|.+=-. -.-.-+++.|.....-.+++ ||||+.
T Consensus 2 m~~~s~~~-~~~p~v~l~~~~~~rIGR~---~~~~l~LddpsVs~~-------HAti~~~~~G~~~l~S~nGtVFVNGqr 70 (102)
T 3uv0_A 2 MADVSLFF-GGLPAILLKADTIYRIGRQ---KGLEISIADESMELA-------HATACILRRGVVRLAALVGKIFVNDQE 70 (102)
T ss_dssp --CEEEEE-TTSCCEECCTTCCEEEESS---TTSTEECCCTTSCTT-------CEEEEEEETTEEEEEESSSCEEETTEE
T ss_pred cceEEEEE-CCcccEEeecCcEEEEcCC---CCCcEEECCcccccc-------eEEEEecCCceEEEEeccCcEEECCEE
Confidence 45577777 5544322 27777777776 344777777764311 11223455566665677887 999975
Q ss_pred c
Q 028962 148 S 148 (201)
Q Consensus 148 ~ 148 (201)
.
T Consensus 71 v 71 (102)
T 3uv0_A 71 E 71 (102)
T ss_dssp E
T ss_pred e
Confidence 4
No 4
>3lmb_A Uncharacterized protein; protein OLEI01261, unknown function, chlorobaculum tepidum T structural genomics, PSI2, MCSG; HET: MSE; 2.10A {Oleispira antarctica rb-8} SCOP: d.38.1.0
Probab=48.55 E-value=36 Score=26.76 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=50.0
Q ss_pred CceEEeEeceeeEEcCccceEEEEEEeCCchhhHHHHHHHHhhhHhcCCchhhhhc--c---------cceeccceeeee
Q 028962 130 EGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALLDSHLSLM--Q---------KPYALFSSTYFC 198 (201)
Q Consensus 130 EGeI~Tr~V~aKFvNGkP~~IEa~y~m~s~~eWdRFMRFMeRYAe~NGLg~~~~~~--~---------~~~~~~~~~~~~ 198 (201)
++.+.+.+.+.+|+--...++.|...+..+++|++|..=.+|..+.- ..|.-.+. . ++-|.|..+|+.
T Consensus 83 ~~~vv~~~~~I~yl~P~~~~~~a~~~~~~~~~~~~i~~~l~~~gK~~-~~l~v~I~d~~~~~~~~~~~~~~a~~~g~y~~ 161 (165)
T 3lmb_A 83 ACNQVVTEGNMKYIAPVYGRIRAICHAPDEEELANFFDHFERKGKAR-ISLEAAIYNDACVMKIEPETKPSVKFNGQYAI 161 (165)
T ss_dssp CCEEEEEEEEEEECSCCCSCEEEEEECCCHHHHHHHHHHHHHHSEEE-EEEEEEEESCTTCCSCCTTSCCSEEEEEEEEE
T ss_pred CCeEEEEEeEEEEccCccCCeEEEEEeCcHHHHHHHHHHHHhCCceE-EEEEEEEEeCCccccccccceEEEEEEEEEEE
Confidence 47899999999999877778999999999999999987666644321 22322222 2 667888888764
No 5
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.30 E-value=15 Score=26.78 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=15.6
Q ss_pred cCceeeEEEEecCceEEeE
Q 028962 118 IGDITGFYMIDEEGTLQSV 136 (201)
Q Consensus 118 ~g~ITGMyLIDEEGeI~Tr 136 (201)
.|.+..|.|.||+|+|..+
T Consensus 38 ~g~~~~~~L~De~G~I~at 56 (114)
T 1ynx_A 38 DGKLFNVNFLDTSGEIRAT 56 (114)
T ss_dssp EEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEEECCCCeEEEE
Confidence 4788899999999987654
No 6
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=38.28 E-value=31 Score=29.84 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=21.9
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccccC
Q 028962 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFDSS 115 (201)
Q Consensus 86 iPdVrLTRSrdG~~GtA~F~Fe~Pkal~s~ 115 (201)
..+|.+.+..+ .|.++++|+.|+..|..
T Consensus 54 ~~~i~~~~~~~--~gVa~ItlnrP~~~NAl 81 (334)
T 3t8b_A 54 LTDITYHRHVD--DATVRVAFNRPEVRNAF 81 (334)
T ss_dssp CSSEEEEEESS--SSEEEEEECCGGGTTCC
T ss_pred CceEEEEEecc--CCEEEEEEcCCCCCCCC
Confidence 57899998764 36999999999876544
No 7
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=37.89 E-value=6.8 Score=32.96 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=17.3
Q ss_pred CCcCCeeeeecCCCCCccccCCccccceeeceeceeEeecCCCCC---------CCCCeeEEeccC-CCcceEEEEEcC
Q 028962 40 SPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDEL---------TVPDVKLTKSRD-GSNGMAIFSFSE 108 (201)
Q Consensus 40 s~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~asIQFi~GidEe---------~iPdVrLTRSrd-G~~GtA~F~Fe~ 108 (201)
++|-||.|.-.++ +....+......++.|..+--...--|+.-- .=..|.+.+.+| |..|.++=++.+
T Consensus 18 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~lr~k~~~rslP~~~kmkIkKGD~V~VIaGkDKGK~GkVl~V~~k 95 (191)
T 3bbo_W 18 NSFLGQRLFPSPT-TLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKH 95 (191)
T ss_dssp ----------------------------------------------CTTSCCSCCSSCEEECSSSSTTCCCSCCCCCSS
T ss_pred ccccCcccCCCcc-ccCcccccCCceeeEecccHHHHHHhCCCCCCccccCeeecCCEEEEeecCCCCceEEEEEEECC
Confidence 7899998864443 2223333333344555444444443333211 003688888888 888998877743
No 8
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=33.01 E-value=42 Score=26.61 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=14.8
Q ss_pred cCceeeEEEEecCceEEeE
Q 028962 118 IGDITGFYMIDEEGTLQSV 136 (201)
Q Consensus 118 ~g~ITGMyLIDEEGeI~Tr 136 (201)
.+.+..|.|.||+|+|..+
T Consensus 42 ~g~~~~~~L~De~G~I~at 60 (246)
T 1jmc_A 42 EGKLFSLELVDESGEIRAT 60 (246)
T ss_dssp EEEEEEEEEECSSCEEEEE
T ss_pred CceEEEEEEECCCCeEEEE
Confidence 3677888999999977654
No 9
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=31.61 E-value=1.2e+02 Score=20.93 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=21.7
Q ss_pred CCCeeEEeccCC-CcceEEEEEcCCccc
Q 028962 86 VPDVKLTKSRDG-SNGMAIFSFSEPSVF 112 (201)
Q Consensus 86 iPdVrLTRSrdG-~~GtA~F~Fe~Pkal 112 (201)
|-+|++.+.++| ..|.|...|+++..-
T Consensus 62 v~~v~i~~~~~g~~~g~afV~f~~~~~A 89 (124)
T 2kt5_A 62 LKKAAVDYDRSGRSLGTADVHFERRADA 89 (124)
T ss_dssp CSEEEEECCSSSSCCSEEEEEESSHHHH
T ss_pred eeEEEEEECCCCCEeeEEEEEECCHHHH
Confidence 567899888866 468999999998754
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=30.95 E-value=52 Score=25.75 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=42.1
Q ss_pred CCCcCCeeeeecCCCCCccccCCccccceeeceeceeEeecCCCCCC---------------CCCeeEEeccCCC-cceE
Q 028962 39 QSPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELT---------------VPDVKLTKSRDGS-NGMA 102 (201)
Q Consensus 39 ~s~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~asIQFi~GidEe~---------------iPdVrLTRSrdG~-~GtA 102 (201)
+..+.|..|.+-...+...+.... ....=|+.|++..+ |-+|+|.+.++|. +|.|
T Consensus 159 ~~~~~g~~i~v~~a~~~~~~~~~~---------~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~a 229 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQLTPALL---------HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFA 229 (284)
T ss_dssp TCEETTEECEEEECCGGGCCTTTT---------SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEE
T ss_pred CCEeCCcEEEEEECCCCCCCcccC---------CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEE
Confidence 456788888876554433221111 12233667777662 5579999988875 8999
Q ss_pred EEEEcCCccc
Q 028962 103 IFSFSEPSVF 112 (201)
Q Consensus 103 ~F~Fe~Pkal 112 (201)
...|++++.-
T Consensus 230 fV~f~~~~~A 239 (284)
T 3smz_A 230 VLEYETAEMA 239 (284)
T ss_dssp EEECSSHHHH
T ss_pred EEEeCCHHHH
Confidence 9999998744
No 11
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.57 E-value=14 Score=26.61 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=27.6
Q ss_pred eEeecCCCCCCCCCeeEEeccCCC-cceEEEEEcCCccc
Q 028962 75 IQFIQGTDELTVPDVKLTKSRDGS-NGMAIFSFSEPSVF 112 (201)
Q Consensus 75 IQFi~GidEe~iPdVrLTRSrdG~-~GtA~F~Fe~Pkal 112 (201)
.+||... + |-+|+|.+.++|. +|.|...|++++..
T Consensus 34 ~~~F~~~--~-v~~v~i~~d~~g~~~G~afV~F~~~~~a 69 (109)
T 2dnn_A 34 RDFFHGL--R-VDAVHLLKDHVGRNNGNGLVKFLSPQDT 69 (109)
T ss_dssp HHHTTTS--C-CCEEEECCCTTCCCCSEEEEECSSHHHH
T ss_pred HHHhccC--C-eeEEEEEECCCCCCCeEEEEEECCHHHH
Confidence 4577777 3 6799999988864 79999999998744
No 12
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=29.54 E-value=46 Score=26.34 Aligned_cols=39 Identities=5% Similarity=-0.084 Sum_probs=28.4
Q ss_pred eeeEEcCc-cceEEEEEEeCCchhhHHHHHHHHhhhHhcC
Q 028962 139 SAKFVNGR-PSRIEAKYIMRSPREWDRFMRFMERQMVKAL 177 (201)
Q Consensus 139 ~aKFvNGk-P~~IEa~y~m~s~~eWdRFMRFMeRYAe~NG 177 (201)
...|.++- .-.|+-.+.+.++..|+||-.+-+.-.+.||
T Consensus 28 ~~~f~~t~~~~~I~~I~rv~n~~l~~~f~~~k~~~~~~~~ 67 (198)
T 2pqf_A 28 WNLFNRTLPFYFVQKIERVQNLALWEVYQWQKGQMQKQNG 67 (198)
T ss_dssp HHHHHTTCTTSEEEEEEEEECHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhhCCCCEEEEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 33444442 2358889999999999999999877666554
No 13
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=27.56 E-value=98 Score=21.85 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=31.8
Q ss_pred eeEEEEecCceEEeEeceeeEEcCccceEEEEEEeCCchhhHHHHHHHHhhhHhcCCchhhhhc
Q 028962 122 TGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQMVKALLDSHLSLM 185 (201)
Q Consensus 122 TGMyLIDEEGeI~Tr~V~aKFvNGkP~~IEa~y~m~s~~eWdRFMRFMeRYAe~NGLg~~~~~~ 185 (201)
.-+.|.|++|. +.+|+.+-.+| .+.+ ...|.+| |.+|+|.-+|.+.
T Consensus 40 ~~v~L~~~~G~--~W~v~~~~~~~-------~~~l--~~GW~~F-------v~~~~L~~GD~lv 85 (104)
T 1yel_A 40 ITVDLLDYSGR--SWTVRMKKRGE-------KVFL--TVGWENF-------VKDNNLEDGKYLQ 85 (104)
T ss_dssp SEEEEEETTSC--EEEEEEEEETT-------EEEE--CTTHHHH-------HHHHTCCTTCEEE
T ss_pred CEEEEECCCCC--EEEEEEEEECC-------cEEE--ccChHHH-------HHHcCCCCCCEEE
Confidence 34788999994 67777665444 2344 4679876 6799999888654
No 14
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=26.57 E-value=23 Score=31.48 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCchhhHHHHHHHHh---hhHhcCCchhhhhcccceecc
Q 028962 157 RSPREWDRFMRFMER---QMVKALLDSHLSLMQKPYALF 192 (201)
Q Consensus 157 ~s~~eWdRFMRFMeR---YAe~NGLg~~~~~~~~~~~~~ 192 (201)
..++.|+++..|+++ ||+++|+....-....|+.+|
T Consensus 190 ~~e~~w~~l~~~L~~i~~~Aee~GV~Laiep~dpp~~~~ 228 (386)
T 3bdk_A 190 SEEDLWANLEYFIKAILPTAEEAGVKMAIHPDDPPYGIF 228 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSSCEEEECCCSSSSCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCEEEEeeCCcccccc
Confidence 448899999999985 889999887776666666443
No 15
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=25.94 E-value=17 Score=27.12 Aligned_cols=35 Identities=31% Similarity=0.568 Sum_probs=26.6
Q ss_pred EeecCCCCCCCC-CeeEEeccCC-CcceEEEEEcCCccc
Q 028962 76 QFIQGTDELTVP-DVKLTKSRDG-SNGMAIFSFSEPSVF 112 (201)
Q Consensus 76 QFi~GidEe~iP-dVrLTRSrdG-~~GtA~F~Fe~Pkal 112 (201)
+||... + +++ +|+|.+.++| .+|.|...|++++..
T Consensus 61 ~~F~~~-~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A 97 (126)
T 2hgm_A 61 QFFSGL-E-IVPNGITLPVDPEGKITGEAFVQFASQELA 97 (126)
T ss_dssp HHTTTS-C-EEEEEEECCCCSSSSSCSEEEEEESSTTHH
T ss_pred HHHhcC-C-ceeeEEEEEECCCCCCceEEEEEECCHHHH
Confidence 566666 3 233 8999988886 479999999999865
No 16
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=25.86 E-value=48 Score=22.85 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=16.9
Q ss_pred CceeeEEEEecCceEEeEec
Q 028962 119 GDITGFYMIDEEGTLQSVDV 138 (201)
Q Consensus 119 g~ITGMyLIDEEGeI~Tr~V 138 (201)
..+-.+++||.+|.|..+.+
T Consensus 112 ~~~P~~~lid~~G~i~~~~~ 131 (142)
T 3eur_A 112 RAIPTLYLLDKNKTVLLKDA 131 (142)
T ss_dssp TTCSEEEEECTTCBEEEEEE
T ss_pred CcCCeEEEECCCCcEEecCC
Confidence 46778999999999988765
No 17
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=24.90 E-value=54 Score=18.67 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=18.3
Q ss_pred eeEEEEecCceEEeEeceeeEEcCc
Q 028962 122 TGFYMIDEEGTLQSVDVSAKFVNGR 146 (201)
Q Consensus 122 TGMyLIDEEGeI~Tr~V~aKFvNGk 146 (201)
.|++++|.+|.|...+-.+.=+.|-
T Consensus 3 ~~i~~~d~~g~i~~~N~~~~~l~g~ 27 (96)
T 3a0s_A 3 TAIITLSKDGRITEWNKKAEQLFGL 27 (96)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHCC
T ss_pred ceEEEEcCCCCEeehhHHHHHHhCC
Confidence 4789999999998766655444453
No 18
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=24.65 E-value=77 Score=25.08 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=30.1
Q ss_pred cCCCcceEEEEEcCCcccccCCccCceeeEEEEec
Q 028962 95 RDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDE 129 (201)
Q Consensus 95 rdG~~GtA~F~Fe~Pkal~s~t~~g~ITGMyLIDE 129 (201)
+-|..+.+.+.+++|=+++++.+......+.|+|+
T Consensus 153 ~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~ 187 (204)
T 3e1y_E 153 KQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 187 (204)
T ss_dssp CTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECS
T ss_pred CCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEEC
Confidence 35888999999999999999877677777888888
No 19
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=24.62 E-value=63 Score=20.80 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=20.8
Q ss_pred CCCeeEEeccCCC--cceEEEEEcCCccc
Q 028962 86 VPDVKLTKSRDGS--NGMAIFSFSEPSVF 112 (201)
Q Consensus 86 iPdVrLTRSrdG~--~GtA~F~Fe~Pkal 112 (201)
|-+|++.+.++++ .|.|...|++++.-
T Consensus 38 i~~v~i~~~~~~g~~~g~afV~f~~~~~a 66 (87)
T 3s7r_A 38 VVDCTIKMDPNTGRSRGFGFILFKDAASV 66 (87)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSTHHH
T ss_pred EEEEEEeecCCCCccccEEEEEECCHHHH
Confidence 5678888887533 67899999998855
No 20
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=24.14 E-value=28 Score=27.03 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.7
Q ss_pred eEEEEecCceEEeEec
Q 028962 123 GFYMIDEEGTLQSVDV 138 (201)
Q Consensus 123 GMyLIDEEGeI~Tr~V 138 (201)
-+||+|.||.|.++.-
T Consensus 57 r~~l~d~eG~Il~~~~ 72 (138)
T 3v67_A 57 RVFFSDYNGNVLTTDK 72 (138)
T ss_dssp EEEEECTTSCEECCCC
T ss_pred cEEEEcCCCCEecCCc
Confidence 5999999999998753
No 21
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=23.54 E-value=1.2e+02 Score=20.41 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=25.3
Q ss_pred CceeeEEEEecCceEEeEeceeeEEcCccceEEEEEEeCCchhhHHHHHHHHhh
Q 028962 119 GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERQ 172 (201)
Q Consensus 119 g~ITGMyLIDEEGeI~Tr~V~aKFvNGkP~~IEa~y~m~s~~eWdRFMRFMeRY 172 (201)
..+-.++++|.+|.|..+.+ ..++++.++..+++.
T Consensus 110 ~~~P~~~lid~~G~i~~~~~-------------------g~~~~~~~l~~l~~~ 144 (148)
T 3hcz_A 110 YATPVLYVLDKNKVIIAKRI-------------------GYENLDDFLVQYEKS 144 (148)
T ss_dssp CSSCEEEEECTTCBEEEESC-------------------CGGGHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcEEEecC-------------------CHHHHHHHHHHHHHH
Confidence 35667899999999886532 236788888777654
No 22
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=23.45 E-value=52 Score=23.90 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.3
Q ss_pred eEEEEecCceEEeEec
Q 028962 123 GFYMIDEEGTLQSVDV 138 (201)
Q Consensus 123 GMyLIDEEGeI~Tr~V 138 (201)
..|+||++|.|.-+.+
T Consensus 121 ~tflID~~G~I~~~~~ 136 (157)
T 4g2e_A 121 AVFVIDKEGKVRYKWV 136 (157)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred eEEEECCCCEEEEEEE
Confidence 4799999999875543
No 23
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=23.19 E-value=30 Score=26.47 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=30.0
Q ss_pred EeecCCCCC--------------CCCCeeEEeccCCCcceEEEEEcCCccc
Q 028962 76 QFIQGTDEL--------------TVPDVKLTKSRDGSNGMAIFSFSEPSVF 112 (201)
Q Consensus 76 QFi~GidEe--------------~iPdVrLTRSrdG~~GtA~F~Fe~Pkal 112 (201)
-|+.|++.. .|-+|+|.+.++++.|.|...|++++.-
T Consensus 106 l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 106 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAA 156 (213)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHH
T ss_pred ceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHH
Confidence 377888764 2667899999988999999999998754
No 24
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.00 E-value=32 Score=23.10 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.1
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCccc
Q 028962 86 VPDVKLTKSRDGSNGMAIFSFSEPSVF 112 (201)
Q Consensus 86 iPdVrLTRSrdG~~GtA~F~Fe~Pkal 112 (201)
|-+|+|.+.+++..|.|...|++++.-
T Consensus 42 v~~v~i~~~~~~~~g~afV~f~~~~~a 68 (103)
T 2cq3_A 42 ILDVEIIFNERGSKGFGFVTFENSADA 68 (103)
T ss_dssp EEEEEEECCTTTTCCEEEEEESCHHHH
T ss_pred eEEEEEEecCCCCcEEEEEEECCHHHH
Confidence 557889998888999999999998755
No 25
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.83 E-value=74 Score=20.98 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=20.7
Q ss_pred CC-CeeEEeccCC--CcceEEEEEcCCccc
Q 028962 86 VP-DVKLTKSRDG--SNGMAIFSFSEPSVF 112 (201)
Q Consensus 86 iP-dVrLTRSrdG--~~GtA~F~Fe~Pkal 112 (201)
|- +|++.+.++. ..|-|...|++++.-
T Consensus 36 i~~~v~i~~~~~~g~~~g~afV~f~~~~~a 65 (99)
T 2div_A 36 TVMSVKIIRNRLTGIPAGYCFVEFADLATA 65 (99)
T ss_dssp CCCEEEEEECSSSCCEEEEEEEECSCHHHH
T ss_pred cceEEEEeecCCCCCcCCEEEEEeCCHHHH
Confidence 45 8899988753 348899999988754
No 26
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.77 E-value=44 Score=23.11 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCccc
Q 028962 86 VPDVKLTKSRDGSNGMAIFSFSEPSVF 112 (201)
Q Consensus 86 iPdVrLTRSrdG~~GtA~F~Fe~Pkal 112 (201)
|-+|++.+.+++..|.|...|++++.-
T Consensus 56 i~~v~i~~~~~~~kg~afV~f~~~~~A 82 (109)
T 2err_A 56 ILDVEIIFNERGSKGFGFVTFENSADA 82 (109)
T ss_dssp CSCEEECCBTTBCTTEEEEECCCSHHH
T ss_pred EEEEEEEECCCCCceEEEEEECCHHHH
Confidence 678999998888999999999998754
No 27
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=22.27 E-value=81 Score=20.21 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=20.9
Q ss_pred CCCeeEEeccC-C-CcceEEEEEcCCccc
Q 028962 86 VPDVKLTKSRD-G-SNGMAIFSFSEPSVF 112 (201)
Q Consensus 86 iPdVrLTRSrd-G-~~GtA~F~Fe~Pkal 112 (201)
|-+|++.+.++ | ..|.|...|++++.-
T Consensus 33 i~~v~i~~~~~~~~~~g~afV~f~~~~~a 61 (89)
T 3ucg_A 33 VNRVTILCDKFSGHPKGFAYIEFSDKESV 61 (89)
T ss_dssp EEEEEEEESCSSSSCCEEEEEEESSTHHH
T ss_pred EEEEEEEecCCCCCcceEEEEEECCHHHH
Confidence 56788888863 3 378999999998754
No 28
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=22.25 E-value=1.6e+02 Score=19.90 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=16.4
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCccc
Q 028962 86 VPDVKLTKSRDGSNGMAIFSFSEPSVF 112 (201)
Q Consensus 86 iPdVrLTRSrdG~~GtA~F~Fe~Pkal 112 (201)
|-+|++ ..|.|...|++++.-
T Consensus 55 v~~v~i------~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 55 VAGCSV------HKGYAFVQYSNERHA 75 (110)
T ss_dssp CSEEEE------ETTEEEEECSSSHHH
T ss_pred eEEEEE------eCCEEEEEECCHHHH
Confidence 566777 468999999998854
No 29
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.85 E-value=53 Score=22.72 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=25.9
Q ss_pred EeecCCCCCCCCCeeEEeccCCC-cceEEEEEcCCccc
Q 028962 76 QFIQGTDELTVPDVKLTKSRDGS-NGMAIFSFSEPSVF 112 (201)
Q Consensus 76 QFi~GidEe~iPdVrLTRSrdG~-~GtA~F~Fe~Pkal 112 (201)
+||...- . + +|+|.+.++|. +|.|...|++++..
T Consensus 34 ~~F~~~G-~-~-~v~i~~d~~g~~~G~afV~F~~~~~a 68 (102)
T 1wez_A 34 NFFSPLN-P-M-RVHIEIGPDGRVTGEADVEFATHEDA 68 (102)
T ss_dssp HSSCSCC-C-S-EEEEEESSSSCEEEEEEEECSSSHHH
T ss_pred HHHHHcC-c-e-EEEEEECCCCCEeeEEEEEECCHHHH
Confidence 5666554 3 4 89999988764 68999999998755
No 30
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.80 E-value=34 Score=24.16 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=26.7
Q ss_pred EeecCCCCC-CCCCeeEEeccCCC-cceEEEEEcCCccc
Q 028962 76 QFIQGTDEL-TVPDVKLTKSRDGS-NGMAIFSFSEPSVF 112 (201)
Q Consensus 76 QFi~GidEe-~iPdVrLTRSrdG~-~GtA~F~Fe~Pkal 112 (201)
+||...-+. .|-+|+|.+.++|. +|.|...|++++..
T Consensus 36 ~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a 74 (118)
T 2db1_A 36 NFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDV 74 (118)
T ss_dssp HHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHH
T ss_pred HHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHH
Confidence 455443331 16789999999864 78999999998755
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.72 E-value=33 Score=23.02 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=22.8
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCccc
Q 028962 86 VPDVKLTKSRDGSNGMAIFSFSEPSVF 112 (201)
Q Consensus 86 iPdVrLTRSrdG~~GtA~F~Fe~Pkal 112 (201)
|-+|+|.+.++++.|.|...|+++..-
T Consensus 42 i~~v~i~~~~~~~~g~afV~f~~~~~a 68 (103)
T 2cqi_A 42 CKSCKMITEHTSNDPYCFVEFYEHRDA 68 (103)
T ss_dssp EEEEEEECCCCSSCCEEEEEESSHHHH
T ss_pred EeEEEEEecCCCCCCEEEEEECCHHHH
Confidence 457889998888899999999988754
No 32
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=21.59 E-value=29 Score=21.77 Aligned_cols=13 Identities=46% Similarity=1.132 Sum_probs=10.3
Q ss_pred ceeccceeeeeee
Q 028962 188 PYALFSSTYFCCC 200 (201)
Q Consensus 188 ~~~~~~~~~~~~~ 200 (201)
.-.||.|.|.||-
T Consensus 18 scglfnskyiccr 30 (32)
T 1ews_A 18 SCGLFNSKYICCR 30 (32)
T ss_dssp CCSSSSCSEEEEE
T ss_pred ccccccceeEEec
Confidence 3468999999983
No 33
>3lhe_A GNTR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.62A {Bacillus anthracis} SCOP: d.190.1.0 PDB: 3l5z_A*
Probab=21.22 E-value=1.1e+02 Score=21.76 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=23.9
Q ss_pred cCceEEeEeceeeEEcCccceEEEEEEeCC
Q 028962 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMRS 158 (201)
Q Consensus 129 EEGeI~Tr~V~aKFvNGkP~~IEa~y~m~s 158 (201)
++|+-..+=...+++||.|-.+|-.|.=..
T Consensus 32 ~~~~~v~~i~Rlr~~d~~P~~~~~~ylp~~ 61 (143)
T 3lhe_A 32 SVGDFVYKIIRLRIIHSIPTIMEHTWMPIS 61 (143)
T ss_dssp CTTCEEEEEEEEEEETTEEEEEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCcEEEEEEEEeeHH
Confidence 456666666788999999999999998643
No 34
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=20.93 E-value=1.1e+02 Score=21.12 Aligned_cols=62 Identities=10% Similarity=0.210 Sum_probs=37.9
Q ss_pred CCCcCCeeeeecCCCCCccccCCccccceeeceeceeEeecCCCCC--------------CCCCeeEEecc-CCC-cceE
Q 028962 39 QSPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDEL--------------TVPDVKLTKSR-DGS-NGMA 102 (201)
Q Consensus 39 ~s~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~asIQFi~GidEe--------------~iPdVrLTRSr-dG~-~GtA 102 (201)
+..+.|..|++...++...... ..-=|+.|++.. .|.+|++.+.+ +|. .|.|
T Consensus 66 ~~~~~g~~l~v~~~~~~~~~~~------------~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~a 133 (167)
T 1fxl_A 66 GLRLQTKTIKVSYARPSSASIR------------DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG 133 (167)
T ss_dssp TCEETTEECEEEECCCCCGGGT------------TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEE
T ss_pred CCccCCceEEEEecCCCcccCC------------CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceE
Confidence 4567788887765544322111 111366666654 25678888876 343 6889
Q ss_pred EEEEcCCccc
Q 028962 103 IFSFSEPSVF 112 (201)
Q Consensus 103 ~F~Fe~Pkal 112 (201)
...|++++.-
T Consensus 134 fV~f~~~~~A 143 (167)
T 1fxl_A 134 FIRFDKRIEA 143 (167)
T ss_dssp EEEESSHHHH
T ss_pred EEEeCCHHHH
Confidence 9999988743
No 35
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=20.93 E-value=87 Score=24.87 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=24.5
Q ss_pred ceEEEEEEeCCchhhHHHHHHHHhhhHhcC
Q 028962 148 SRIEAKYIMRSPREWDRFMRFMERQMVKAL 177 (201)
Q Consensus 148 ~~IEa~y~m~s~~eWdRFMRFMeRYAe~NG 177 (201)
-.|+-++-+.++..|+||-++-+.-.+.||
T Consensus 35 ~~I~~I~rI~n~~l~~~f~~~k~~~~~k~~ 64 (193)
T 3smj_A 35 FRIEKIERIQNPDLWNSYQAKKKTMDAKNG 64 (193)
T ss_dssp SEEEEEEEEECHHHHHHHHHHHHHHHHHST
T ss_pred CeEEEEEEECCHHHHHHHHHHHHHHHHhcC
Confidence 468889999999999999998776655554
No 36
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=20.47 E-value=61 Score=27.92 Aligned_cols=55 Identities=11% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCCCCCCCeeEEecc--CCCcceEEEEEcCCcccccCCccCceeeEEEEecCceEEeE
Q 028962 81 TDELTVPDVKLTKSR--DGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSV 136 (201)
Q Consensus 81 idEe~iPdVrLTRSr--dG~~GtA~F~Fe~Pkal~s~t~~g~ITGMyLIDEEGeI~Tr 136 (201)
+.+.+.|-++|+-.- .|.+|..++.|.....-..|. ...-++.+-||..|+|.+.
T Consensus 4 ~~~~~~Pv~~v~AtD~D~g~n~~v~Ysi~~~~~~~~F~-I~~~~~~f~v~~tG~i~~~ 60 (419)
T 3ubh_A 4 VTRAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFK-IRDDNPWVTVETNGAVRVK 60 (419)
T ss_dssp --CCEEEEEEEEEEGGGGCSTTCEEEECCCSSTTCEEE-ESSCCSSEEECTTSEEEES
T ss_pred cccCccceEEEEEEcccCCCCceEEEEEecCCCCceEE-EcCCCccEEECCCcEEEEC
Confidence 445566666666433 388999999997654322221 1222345555567887765
Done!