Query 028962
Match_columns 201
No_of_seqs 93 out of 102
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 08:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028962.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028962hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zunb2 b.44.1.1 (B:330-434) S 70.1 2.7 0.0002 29.1 4.4 39 95-133 58-97 (105)
2 d2ghpa2 d.58.7.1 (A:41-115) U4 58.3 1.8 0.00013 27.6 1.4 27 86-112 27-53 (75)
3 d1nija2 d.237.1.1 (A:224-318) 55.2 4.8 0.00035 26.9 3.2 26 152-177 4-29 (95)
4 d1jnya2 b.44.1.1 (A:323-429) E 51.2 11 0.00078 25.6 4.6 38 95-133 59-96 (107)
5 d1jmca1 b.40.4.3 (A:183-298) R 47.7 9.4 0.00069 26.1 3.9 18 118-135 36-53 (116)
6 d1q52a_ c.14.1.3 (A:) Naphthoa 42.6 12 0.00088 28.7 4.2 29 86-116 17-45 (297)
7 d1r57a_ d.108.1.1 (A:) Hypothe 41.6 42 0.0031 22.2 6.5 59 120-179 9-70 (102)
8 d2fug71 d.82.2.2 (7:3-129) NAD 41.3 6 0.00044 29.7 2.1 32 160-191 9-48 (127)
9 d1gsoa3 d.142.1.2 (A:104-327) 40.3 6.6 0.00048 29.8 2.2 24 124-149 170-193 (224)
10 d1v9ya_ d.110.3.2 (A:) Direct 35.0 11 0.00081 22.9 2.3 25 121-145 11-35 (113)
11 d1xj3a1 d.110.3.2 (A:154-259) 32.3 13 0.00096 22.2 2.3 23 123-145 2-24 (106)
12 d1l3wa1 b.1.6.1 (A:1-100) C-ca 31.1 20 0.0015 23.2 3.3 38 92-135 24-62 (100)
13 d1uawa_ d.58.7.1 (A:) Musashi- 29.0 28 0.002 21.7 3.6 28 86-113 27-56 (77)
14 d1e2ya_ c.47.1.10 (A:) Trypare 28.4 17 0.0012 25.3 2.7 16 121-136 124-139 (167)
15 d1elua_ c.67.1.3 (A:) Cystine 27.8 8.7 0.00064 29.3 1.0 73 86-173 307-380 (381)
16 d1ohpa1 d.17.4.3 (A:1-125) Del 27.1 5.3 0.00038 25.5 -0.4 60 75-135 52-111 (125)
17 d2pkha1 d.190.1.2 (A:109-249) 25.5 36 0.0026 22.5 3.9 29 129-157 25-53 (141)
18 d2cq3a1 d.58.7.1 (A:110-202) R 25.3 13 0.00092 24.0 1.3 27 86-112 38-64 (93)
19 d2gvia2 g.39.1.18 (A:169-201) 24.8 12 0.00089 22.1 1.0 14 135-148 13-26 (33)
20 d1we0a1 c.47.1.10 (A:1-166) Al 24.7 22 0.0016 25.4 2.7 17 122-138 120-136 (166)
21 d1qxha_ c.47.1.10 (A:) Thiol p 24.5 21 0.0015 25.1 2.5 16 123-138 133-148 (164)
22 d1xvwa1 c.47.1.10 (A:1-153) Pu 23.7 23 0.0017 23.9 2.6 14 123-136 117-130 (153)
23 d1f60a2 b.44.1.1 (A:335-441) E 23.5 57 0.0041 22.5 4.7 40 95-134 59-98 (107)
24 d1bxba_ c.1.15.3 (A:) D-xylose 23.4 8.2 0.00059 32.3 0.0 47 143-189 135-184 (387)
25 d2b7ka1 c.47.1.10 (A:111-279) 23.2 21 0.0015 23.0 2.1 16 121-136 130-145 (169)
26 d1ewsa_ g.9.1.1 (A:) Alpha-def 21.6 13 0.00098 21.8 0.8 13 188-200 18-30 (32)
27 d1hcda_ b.42.5.2 (A:) Histidin 21.5 8 0.00058 27.1 -0.4 42 124-165 74-116 (118)
28 d1hd0a_ d.58.7.1 (A:) Heteroge 21.2 16 0.0012 22.6 1.1 27 86-112 26-54 (75)
No 1
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=70.14 E-value=2.7 Score=29.12 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=34.0
Q ss_pred cCCCcceEEEEEcCCcccccCCccCceeeEEEEecC-ceE
Q 028962 95 RDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE-GTL 133 (201)
Q Consensus 95 rdG~~GtA~F~Fe~Pkal~s~t~~g~ITGMyLIDEE-GeI 133 (201)
+-+..|.+.+..++|=++|.+.+......+.|||++ |+.
T Consensus 58 ~~Ndi~~v~i~~~~~i~~d~y~~n~~~G~fiLiD~~~~~T 97 (105)
T d1zunb2 58 QLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNGT 97 (105)
T ss_dssp CTTCEEEEEEEEEEEEECCCTTTCTTTTEEEEECTTTCCE
T ss_pred CCccEEEEEEEECCccccCccccCcCceeEEEEECCCCCE
Confidence 458899999999999999999888899999999986 443
No 2
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=58.30 E-value=1.8 Score=27.56 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=24.4
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCccc
Q 028962 86 VPDVKLTKSRDGSNGMAIFSFSEPSVF 112 (201)
Q Consensus 86 iPdVrLTRSrdG~~GtA~F~Fe~Pkal 112 (201)
|-+|+|.+++++++|.|.+.|++++..
T Consensus 27 I~~v~~~~~~~~~~~~afV~F~~~~~a 53 (75)
T d2ghpa2 27 IIHVDVADSLKKNFRFARIEFARYDGA 53 (75)
T ss_dssp EEEEEEEECTTSSSEEEEEEESSHHHH
T ss_pred eEEEEEEeeccccceEEEEEEcchHHh
Confidence 567999999999999999999998866
No 3
>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=55.24 E-value=4.8 Score=26.86 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=22.2
Q ss_pred EEEEeCCchhhHHHHHHHHhhhHhcC
Q 028962 152 AKYIMRSPREWDRFMRFMERQMVKAL 177 (201)
Q Consensus 152 a~y~m~s~~eWdRFMRFMeRYAe~NG 177 (201)
.+|..+.|-+|+||+.||+....++|
T Consensus 4 ~~~~~~~P~d~~~f~~~l~~ll~~~~ 29 (95)
T d1nija2 4 IVVELDYPVDISEVSRVMENLLLESA 29 (95)
T ss_dssp EEEEESSCBCHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 36788889999999999999877765
No 4
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=51.19 E-value=11 Score=25.59 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=31.9
Q ss_pred cCCCcceEEEEEcCCcccccCCccCceeeEEEEecCceE
Q 028962 95 RDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTL 133 (201)
Q Consensus 95 rdG~~GtA~F~Fe~Pkal~s~t~~g~ITGMyLIDEEGeI 133 (201)
+.|..+.+.|.|++|=.++.+.+.....-+.|+|| |..
T Consensus 59 ~~g~~a~v~i~~~~~i~~e~~~~~~~lGrfilrd~-g~T 96 (107)
T d1jnya2 59 KQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM-GKT 96 (107)
T ss_dssp CTTCEEEEEEEESSCEECCCTTTSGGGTEEEEEET-TEE
T ss_pred cCCceEEEEEEcCCceEEeecccCCCcCCEEEEEC-Cce
Confidence 46999999999999999998877778888889995 543
No 5
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.68 E-value=9.4 Score=26.11 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=13.8
Q ss_pred cCceeeEEEEecCceEEe
Q 028962 118 IGDITGFYMIDEEGTLQS 135 (201)
Q Consensus 118 ~g~ITGMyLIDEEGeI~T 135 (201)
.|.+-.|.|.||+|+|..
T Consensus 36 ~g~v~~~~l~De~G~I~~ 53 (116)
T d1jmca1 36 EGKLFSLELVDESGEIRA 53 (116)
T ss_dssp EEEEEEEEEECSSCEEEE
T ss_pred CceEEEEEEEcCCCCEEE
Confidence 367788889999987654
No 6
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=42.58 E-value=12 Score=28.73 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=23.5
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccccCC
Q 028962 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFDSSG 116 (201)
Q Consensus 86 iPdVrLTRSrdG~~GtA~F~Fe~Pkal~s~t 116 (201)
..||.++|+-|+ |+|+++|+.|+.+|+.+
T Consensus 17 ~~~i~~~~~~~~--gi~~ItlnRP~~~NAl~ 45 (297)
T d1q52a_ 17 LTDITYHRHVDD--ATVRVAFNRPEVRNAFR 45 (297)
T ss_dssp CSSEEEEEESSS--SEEEEEECCGGGTTCCC
T ss_pred CcceEEEEEccC--CEEEEEECCCCcCCCCC
Confidence 478999988764 79999999998886553
No 7
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]}
Probab=41.62 E-value=42 Score=22.23 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=36.4
Q ss_pred ceeeEEEEecCceEEeEeceeeEEcCccceEEEEEEeCCch---hhHHHHHHHHhhhHhcCCc
Q 028962 120 DITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPR---EWDRFMRFMERQMVKALLD 179 (201)
Q Consensus 120 ~ITGMyLIDEEGeI~Tr~V~aKFvNGkP~~IEa~y~m~s~~---eWdRFMRFMeRYAe~NGLg 179 (201)
....+|+.|.||++.-. +..+...++---|.-+++-.+-. -=.+.|.++..||+++|+.
T Consensus 9 ~~~~f~v~~~~g~~vg~-~~~~~~~~~~~~i~~~~V~p~~RG~Gig~~Lv~~~l~~Ar~~g~k 70 (102)
T d1r57a_ 9 GENKFYIGDDENNALAE-ITYRFVDNNEINIDHTGVSDELGGQGVGKKLLKAVVEHARENNLK 70 (102)
T ss_dssp ETTEEEEESSSTTEEEE-EEEEESSSSEEEEEEEEECCSSSTTCTHHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEEEeCCceEEE-EEEEEcCCCEEEEEEEEEChHHCCccHHHHHHHHHHHHHHHCCCE
Confidence 34568899999887633 22333333322344444432222 2468999999999999984
No 8
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=41.33 E-value=6 Score=29.69 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHhhhHhcCCchhhhh--------cccceec
Q 028962 160 REWDRFMRFMERQMVKALLDSHLSL--------MQKPYAL 191 (201)
Q Consensus 160 ~eWdRFMRFMeRYAe~NGLg~~~~~--------~~~~~~~ 191 (201)
+.|--..-+|..||++.|+.|..-+ |..||-|
T Consensus 9 ~aWvell~Wm~e~A~~rGv~feKeaDFPDyIYRMERpYdL 48 (127)
T d2fug71 9 EAWVELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDL 48 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCcceecccccHHHHhccccccC
Confidence 4699999999999999999987543 7788876
No 9
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
Probab=40.29 E-value=6.6 Score=29.85 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.7
Q ss_pred EEEEecCceEEeEeceeeEEcCccce
Q 028962 124 FYMIDEEGTLQSVDVSAKFVNGRPSR 149 (201)
Q Consensus 124 MyLIDEEGeI~Tr~V~aKFvNGkP~~ 149 (201)
=+|+|++|++-+-|+|++| |.|+.
T Consensus 170 ~~mit~~G~p~vlE~N~R~--Gdpe~ 193 (224)
T d1gsoa3 170 GLMIDKQGNPKVIEFNCRF--GDLET 193 (224)
T ss_dssp EEEEETTCCEEEEEEESSC--CTTTH
T ss_pred ceeeeeCCCEEEEEEecCC--CCCcc
Confidence 3689999999999999999 88887
No 10
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=34.97 E-value=11 Score=22.90 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=20.2
Q ss_pred eeeEEEEecCceEEeEeceeeEEcC
Q 028962 121 ITGFYMIDEEGTLQSVDVSAKFVNG 145 (201)
Q Consensus 121 ITGMyLIDEEGeI~Tr~V~aKFvNG 145 (201)
.-|++++|++|.|.-.+-.+.=+.|
T Consensus 11 ~d~i~~~d~~g~i~~~N~~~~~l~G 35 (113)
T d1v9ya_ 11 MMGAVLINENDEVMFFNPAAEKLWG 35 (113)
T ss_dssp SSEEEEECTTSBEEEECHHHHHHHS
T ss_pred cCcEEEEeCCCCEEEEchhHhhhhc
Confidence 4599999999999888776666656
No 11
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=32.31 E-value=13 Score=22.17 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.6
Q ss_pred eEEEEecCceEEeEeceeeEEcC
Q 028962 123 GFYMIDEEGTLQSVDVSAKFVNG 145 (201)
Q Consensus 123 GMyLIDEEGeI~Tr~V~aKFvNG 145 (201)
|++++|++|.|...+-.+.=+.|
T Consensus 2 gi~~~D~~G~I~~~N~a~~~l~G 24 (106)
T d1xj3a1 2 AMIVIDGHGIIQLFSTAAERLFG 24 (106)
T ss_dssp CEEEEETTSBEEEECHHHHHHHC
T ss_pred EEEEECCCCcEEEEcHHHHHHhh
Confidence 79999999999988877766666
No 12
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=31.09 E-value=20 Score=23.21 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=22.8
Q ss_pred EeccCCCcceEEEEEcCCcccccCCccCceeeEEEEecC-ceEEe
Q 028962 92 TKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEE-GTLQS 135 (201)
Q Consensus 92 TRSrdG~~GtA~F~Fe~Pkal~s~t~~g~ITGMyLIDEE-GeI~T 135 (201)
+.+-++.+|...+.+..+.+= ..-.+++-||+. |+|.+
T Consensus 24 ~~~D~~~n~~i~Y~i~~~~~~------~~~~~~F~Id~~tG~I~~ 62 (100)
T d1l3wa1 24 IKSNKDRFNKVYYSITGQGAD------NPPQGVFRIEWETGWMLV 62 (100)
T ss_dssp CCCSGGGSSCEEEEEEEBTTT------BSSTTSEEECTTTCEEEE
T ss_pred EECCCCCCCcEEEEEEeCCCC------CCccccEEEeCCCCEEEE
Confidence 344456788888888754321 122346667766 77776
No 13
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.98 E-value=28 Score=21.71 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=22.5
Q ss_pred CCCeeEEeccC-C-CcceEEEEEcCCcccc
Q 028962 86 VPDVKLTKSRD-G-SNGMAIFSFSEPSVFD 113 (201)
Q Consensus 86 iPdVrLTRSrd-G-~~GtA~F~Fe~Pkal~ 113 (201)
|-+|+|-+.++ | .+|.|...|++++..+
T Consensus 27 i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~ 56 (77)
T d1uawa_ 27 VKECLVMRDPLTKRSRGFGFVTFMDQAGVD 56 (77)
T ss_dssp CCCEEEECCCCSSSCSSEEEECCCCTTHHH
T ss_pred cceeeeecccCCCCccceEEEEECCHHHHH
Confidence 67899988875 3 4689999999988663
No 14
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}
Probab=28.42 E-value=17 Score=25.34 Aligned_cols=16 Identities=31% Similarity=0.791 Sum_probs=12.9
Q ss_pred eeeEEEEecCceEEeE
Q 028962 121 ITGFYMIDEEGTLQSV 136 (201)
Q Consensus 121 ITGMyLIDEEGeI~Tr 136 (201)
+-+.|+||++|.|...
T Consensus 124 ~r~tfvID~~G~Ir~~ 139 (167)
T d1e2ya_ 124 YRGVFIIDPNGKLRQI 139 (167)
T ss_dssp CEEEEEECTTSBEEEE
T ss_pred eeEEEEECCCCEEEEE
Confidence 3478999999999655
No 15
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}
Probab=27.76 E-value=8.7 Score=29.27 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=44.6
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCcccccCCccCceeeEEEEecCceEEeEeceeeEEcCccceEEEEE-EeCCchhhHH
Q 028962 86 VPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKY-IMRSPREWDR 164 (201)
Q Consensus 86 iPdVrLTRSrdG~~GtA~F~Fe~Pkal~s~t~~g~ITGMyLIDEEGeI~Tr~V~aKFvNGkP~~IEa~y-~m~s~~eWdR 164 (201)
+|++++.-+..-..+++.|..+.+...+ +|- .+.+|+|.+ ++. .|.|..|-..+ ...+++|.||
T Consensus 307 ~~~~~~~~~~~~~~~~vsf~~~~~~~~~------~i~--~~L~~~gi~-v~~------~~~~~~lRis~~~~nt~edid~ 371 (381)
T d1elua_ 307 LPHVHCLATSAPQAGLVSFTVDSPLGHR------AIV--QKLEEQRIY-LRT------IADPDCIRACCHYITDEEEINH 371 (381)
T ss_dssp STTEEESCSSCCSSSEEEEEECSSSCHH------HHH--HHHHHTTEE-CEE------ETTTTEEEEECCTTCCHHHHHH
T ss_pred CCCeEecCCCCccccEEEEEcCCCCCHH------HHH--HHHHhCCcE-EEe------cCCCCEEEEecCCCCCHHHHHH
Confidence 5888887554445567777766553211 111 123456643 222 25677777653 4568999999
Q ss_pred HHHHHHhhh
Q 028962 165 FMRFMERQM 173 (201)
Q Consensus 165 FMRFMeRYA 173 (201)
|...|..||
T Consensus 372 ll~~l~e~~ 380 (381)
T d1elua_ 372 LLARLADFG 380 (381)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhhC
Confidence 999998764
No 16
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=27.06 E-value=5.3 Score=25.48 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=30.5
Q ss_pred eEeecCCCCCCCCCeeEEeccCCCcceEEEEEcCCcccccCCccCceeeEEEEecCceEEe
Q 028962 75 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQS 135 (201)
Q Consensus 75 IQFi~GidEe~iPdVrLTRSrdG~~GtA~F~Fe~Pkal~s~t~~g~ITGMyLIDEEGeI~T 135 (201)
.+|+++.... .|++.++.......+.+.+.+.---..+.....-....++-+|++|.|+-
T Consensus 52 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~dGkI~~ 111 (125)
T d1ohpa1 52 REFYANSLKL-PLAVELTQEVRAVANEAAFAFIVSFEYQGRKTVVAPIDHFRFNGAGKVVS 111 (125)
T ss_dssp HHHHHHHTSS-CCEEEECSCCEEETTEEEEEEEEEEEETTEEEEECCEEEEEECTTSCEEE
T ss_pred HHHHHHHhhc-CCceEEEEEEEEecceEEEEEEEEEecCCceEEEEEEEEEEECCCCeEEE
Confidence 3455555554 66666665554444455544332111111010124556777888998864
No 17
>d2pkha1 d.190.1.2 (A:109-249) Histidine utilization repressor HutC {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=25.54 E-value=36 Score=22.47 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=23.8
Q ss_pred cCceEEeEeceeeEEcCccceEEEEEEeC
Q 028962 129 EEGTLQSVDVSAKFVNGRPSRIEAKYIMR 157 (201)
Q Consensus 129 EEGeI~Tr~V~aKFvNGkP~~IEa~y~m~ 157 (201)
++|+-..+=....++||.|-.+|-.|.=.
T Consensus 25 ~~~~~v~~i~Rlr~~d~~P~~~~~~y~~~ 53 (141)
T d2pkha1 25 REGQRVFHSLIVHFENDIPVQIEDRFVNA 53 (141)
T ss_dssp CTTSEEEEEEEEEEETTEEEEEEEEEEET
T ss_pred CCCCEEEEEEEEEccCCEEEEEEEEEecH
Confidence 45666677778999999999999999743
No 18
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.28 E-value=13 Score=24.00 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCCeeEEeccCCCcceEEEEEcCCccc
Q 028962 86 VPDVKLTKSRDGSNGMAIFSFSEPSVF 112 (201)
Q Consensus 86 iPdVrLTRSrdG~~GtA~F~Fe~Pkal 112 (201)
|-+|+|.+++.+..|.|...|++++..
T Consensus 38 v~~v~~~~~~~~~kg~afV~f~~~~~a 64 (93)
T d2cq3a1 38 ILDVEIIFNERGSKGFGFVTFENSADA 64 (93)
T ss_dssp EEEEEEECCTTTTCCEEEEEESCHHHH
T ss_pred eeeccccccccCCcceeEEEECCHHHH
Confidence 567899999999999999999998865
No 19
>d2gvia2 g.39.1.18 (A:169-201) Uncharacterized protein Ta1109 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=24.76 E-value=12 Score=22.08 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=11.8
Q ss_pred eEeceeeEEcCccc
Q 028962 135 SVDVSAKFVNGRPS 148 (201)
Q Consensus 135 Tr~V~aKFvNGkP~ 148 (201)
|-+..+|.+||||.
T Consensus 13 tyeadakllngkpv 26 (33)
T d2gvia2 13 TYEADAKLLNGKPV 26 (33)
T ss_dssp EEGGGCEEETTEEE
T ss_pred eeccchhhhCCCcc
Confidence 56788999999984
No 20
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}
Probab=24.71 E-value=22 Score=25.35 Aligned_cols=17 Identities=29% Similarity=0.878 Sum_probs=13.4
Q ss_pred eeEEEEecCceEEeEec
Q 028962 122 TGFYMIDEEGTLQSVDV 138 (201)
Q Consensus 122 TGMyLIDEEGeI~Tr~V 138 (201)
-+.|+||++|.|.-..+
T Consensus 120 r~tfvID~~G~I~~~~i 136 (166)
T d1we0a1 120 RGTFIIDPDGVIQAIEI 136 (166)
T ss_dssp EEEEEECTTSBEEEEEE
T ss_pred ceEEEECCCCcEEEEEE
Confidence 45799999999976544
No 21
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}
Probab=24.51 E-value=21 Score=25.08 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=12.6
Q ss_pred eEEEEecCceEEeEec
Q 028962 123 GFYMIDEEGTLQSVDV 138 (201)
Q Consensus 123 GMyLIDEEGeI~Tr~V 138 (201)
..|+||++|.|.=+.+
T Consensus 133 a~fvID~~G~I~y~~~ 148 (164)
T d1qxha_ 133 AVVVIDENDNVIFSQL 148 (164)
T ss_dssp EEEEECTTSBEEEEEE
T ss_pred EEEEEcCCCEEEEEEE
Confidence 3699999999975544
No 22
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.73 E-value=23 Score=23.93 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=11.5
Q ss_pred eEEEEecCceEEeE
Q 028962 123 GFYMIDEEGTLQSV 136 (201)
Q Consensus 123 GMyLIDEEGeI~Tr 136 (201)
+.|+||++|.|.-.
T Consensus 117 ~tfvID~~G~I~~~ 130 (153)
T d1xvwa1 117 GTFVVDRSGIIRFA 130 (153)
T ss_dssp EEEEECTTSBEEEE
T ss_pred eEEEECCCCEEEEE
Confidence 47999999999644
No 23
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.50 E-value=57 Score=22.47 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=33.7
Q ss_pred cCCCcceEEEEEcCCcccccCCccCceeeEEEEecCceEE
Q 028962 95 RDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQ 134 (201)
Q Consensus 95 rdG~~GtA~F~Fe~Pkal~s~t~~g~ITGMyLIDEEGeI~ 134 (201)
+.|...++.|...+|-.++.+.+.....-+-|.|+--.|-
T Consensus 59 ~~g~~a~v~i~~~~pi~vE~~~~~p~LGRf~lRd~g~TVA 98 (107)
T d1f60a2 59 KSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVA 98 (107)
T ss_dssp CTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEE
T ss_pred CCCCEEEEEEEeCCCCEEeeccCCCCceeEEEEECCCEEE
Confidence 4689999999999999999988788888888888765443
No 24
>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp. Thermophilus [TaxId: 271]}
Probab=23.40 E-value=8.2 Score=32.34 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=35.2
Q ss_pred EcCccceEEEEEEeCCchhhHHHHHHHHh---hhHhcCCchhhhhcccce
Q 028962 143 VNGRPSRIEAKYIMRSPREWDRFMRFMER---QMVKALLDSHLSLMQKPY 189 (201)
Q Consensus 143 vNGkP~~IEa~y~m~s~~eWdRFMRFMeR---YAe~NGLg~~~~~~~~~~ 189 (201)
++|+.+|-+.....+-..+|||+.++|.. ||++.|.+-...+--||+
T Consensus 135 lW~G~dG~~~~~~~d~~~~~~~~~e~l~~v~~~a~~~g~~~~i~iEpkP~ 184 (387)
T d1bxba_ 135 VWPGREGAEVEATGKARKVWDWVREALNFMAAYAEDQGYGYRFALEPKPN 184 (387)
T ss_dssp ECCTTCEESCGGGCGGGTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSS
T ss_pred EcCCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCC
Confidence 56777776654445567899999999965 778888777777777886
No 25
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.17 E-value=21 Score=23.03 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=12.9
Q ss_pred eeeEEEEecCceEEeE
Q 028962 121 ITGFYMIDEEGTLQSV 136 (201)
Q Consensus 121 ITGMyLIDEEGeI~Tr 136 (201)
...+||||.+|.|.-+
T Consensus 130 ~~~~fLID~~G~vv~~ 145 (169)
T d2b7ka1 130 SIFFYLMDPEGQFVDA 145 (169)
T ss_dssp CCCEEEECTTSCEEEE
T ss_pred cceEEEECCCCeEEEE
Confidence 3568999999998754
No 26
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.59 E-value=13 Score=21.77 Aligned_cols=13 Identities=46% Similarity=1.132 Sum_probs=10.3
Q ss_pred ceeccceeeeeee
Q 028962 188 PYALFSSTYFCCC 200 (201)
Q Consensus 188 ~~~~~~~~~~~~~ 200 (201)
.-.||.|.|.||-
T Consensus 18 scglfnskyiccr 30 (32)
T d1ewsa_ 18 SCGLFNSKYICCR 30 (32)
T ss_dssp CCSSSSCSEEEEE
T ss_pred ccccccceeEEec
Confidence 3468999999983
No 27
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]}
Probab=21.47 E-value=8 Score=27.14 Aligned_cols=42 Identities=7% Similarity=0.176 Sum_probs=31.2
Q ss_pred EEEEecCceEEeEeceeeEEcCccce-EEEEEEeCCchhhHHH
Q 028962 124 FYMIDEEGTLQSVDVSAKFVNGRPSR-IEAKYIMRSPREWDRF 165 (201)
Q Consensus 124 MyLIDEEGeI~Tr~V~aKFvNGkP~~-IEa~y~m~s~~eWdRF 165 (201)
+.+.+..|.+.-+-.+.|||-.+..+ +.|.-.=.++.-||+|
T Consensus 74 F~ie~~~g~valrs~nGkylsa~~~g~v~~n~~~~~~~~WE~f 116 (118)
T d1hcda_ 74 FHLEHHGGKVSIKGHHHHYISADHHGHVSTKEHHDHDTTFEEI 116 (118)
T ss_dssp BEEEEETTEEEEECSTTCEEEECGGGCEEEESSCSSTTCBEEE
T ss_pred EEEEECCCEEEEEeCCCCEEEEcCCCceeeEcCCCCCCCceeE
Confidence 34566778999998999999887655 6666555566679887
No 28
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.21 E-value=16 Score=22.64 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=21.0
Q ss_pred CCCeeEEeccCC--CcceEEEEEcCCccc
Q 028962 86 VPDVKLTKSRDG--SNGMAIFSFSEPSVF 112 (201)
Q Consensus 86 iPdVrLTRSrdG--~~GtA~F~Fe~Pkal 112 (201)
|.+|+|.+.++. .+|.|...|++++..
T Consensus 26 i~~~~i~~d~~t~~~kg~afV~f~~~~~a 54 (75)
T d1hd0a_ 26 VVDCTLKLDPITGRSRGFGFVLFKESESV 54 (75)
T ss_dssp EEEEECCCBTTTTBCCSEEEEEESSHHHH
T ss_pred ccccccccCCCCCCcCceEEEEECCHHHH
Confidence 567788887753 469999999999865
Done!