BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028963
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FQ1|A Chain A, Crystal Structure Of The Two-Domain Non-Ribosomal Peptide
Synthetase Entb Containing Isochorismate Lyase And
Aryl-Carrier Protein Domains
pdb|2FQ1|B Chain B, Crystal Structure Of The Two-Domain Non-Ribosomal Peptide
Synthetase Entb Containing Isochorismate Lyase And
Aryl-Carrier Protein Domains
Length = 287
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 20/198 (10%)
Query: 1 MATSKCSSY---EKYEIRKRNPN----PKSSVLLVIDMQNHFSSIAK---PILDNTLATV 50
MA K +Y E ++I + + P+ + LL+ DMQ++F S P+++ +A +
Sbjct: 3 MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANI 62
Query: 51 ----QLCRRASIPVFFTRHC-HKSPADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGA 105
C++ +IPV++T +S D +L + W L T E + L A
Sbjct: 63 AALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGL----TRSPEQQKVVDRLTPDA 118
Query: 106 DE-VIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTD 164
D+ V+ K YSAF + L++ L G ++I+ GV ++ C TTA DAF+R + F D
Sbjct: 119 DDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVAD 178
Query: 165 ATATSDLELHEATLKNLA 182
A A + H +LK +A
Sbjct: 179 ALADFSRDEHLMSLKYVA 196
>pdb|3IRV|A Chain A, Crystal Structure Of Cysteine Hydrolase Pspph_2384 From
Pseudomonas Syringae Pv. Phaseolicola 1448a
Length = 233
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 34/193 (17%)
Query: 20 NPKSSVLLVIDMQNHF------------SSIAKPILDNTLATVQLCRRASIPVFFTRHCH 67
NP + ++V+DMQ F + I +PI +Q R A + V + RH
Sbjct: 19 NPLRTAVIVVDMQKVFCEPTGALYVKSTADIVQPIQ----KLLQAARAAQVMVIYLRHIV 74
Query: 68 KSP-ADYGMLGEWW-NGD-LVYDGTADAELLPEIKGLVAGADEVI-EKNTYSAFGNTRLQ 123
+ +D G + + + N D ++ D E+ I+ L +D+VI +K YS F NT L
Sbjct: 75 RGDGSDTGRMRDLYPNVDQILARHDPDVEV---IEALAPQSDDVIVDKLFYSGFHNTDLD 131
Query: 124 ERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDL-----------E 172
L V+ +IVCG +TN+CCETT RD R ++V +DA A D +
Sbjct: 132 TVLRARDVDTIIVCGTVTNVCCETTIRDGVHREYKVIALSDANAAMDYPDVGFGAVSAAD 191
Query: 173 LHEATLKNLAYGF 185
+ +L +AY F
Sbjct: 192 VQRISLTTIAYEF 204
>pdb|3KL2|A Chain A, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|B Chain B, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|C Chain C, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|D Chain D, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|E Chain E, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|F Chain F, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|G Chain G, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|H Chain H, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|I Chain I, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|J Chain J, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|K Chain K, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
pdb|3KL2|L Chain L, Crystal Structure Of A Putative Isochorismatase From
Streptomyces Avermitilis
Length = 226
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 34/200 (17%)
Query: 1 MATSKCSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIA-------------KPILDNTL 47
+ TSK K +P + +++I+ QN F+S +L NT+
Sbjct: 3 LTTSKTRKSGVAMTEKLELDPARTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTV 62
Query: 48 ATVQLCRRASIPVF------------FTRHCHKSPADYGMLGEWWNGDLVYDGTADAELL 95
A V R+A +P+ TRH YG+L +G GT A ++
Sbjct: 63 AVVDAARQAGVPIMHAPITFAEGYGELTRH------PYGILKGVVDGKAFVKGTWGAAIV 116
Query: 96 PEIKGLVAGADEVIE-KNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFV 154
E+ + D VIE K F +T L L GV+ +++ G +TN C E+T R +
Sbjct: 117 DELAPV--NGDIVIEGKRGLDTFASTNLDFILRSKGVDTIVLGGFLTNCCVESTMRTGYE 174
Query: 155 RGFRVFFSTDATATSDLELH 174
RGFRV TD A + E H
Sbjct: 175 RGFRVITLTDCVAATSQEEH 194
>pdb|3TB4|A Chain A, Crystal Structure Of The Isc Domain Of Vibb
Length = 223
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 24 SVLLVIDMQ----NHFSSIAKPILDNTLATVQL---CRRASIPVFFT-RHCHKSPADYGM 75
+VLL+ DMQ ++F S A+PI QL ++A IPV +T + ++ PA+ +
Sbjct: 29 AVLLIHDMQEYFVHYFDSQAEPIPSLIKHIQQLKAHAKQAGIPVVYTAQPANQDPAERAL 88
Query: 76 LGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVI 135
L ++W L + A L PE D + K YSAF + L + L G +++I
Sbjct: 89 LSDFWGPGLSEETAIIAPLAPE------SGDVQLTKWRYSAFKKSPLLDWLRETGRDQLI 142
Query: 136 VCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 182
+ GV ++ +TA DAF+ + F D A L HE +L+ ++
Sbjct: 143 ITGVYAHIGILSTALDAFMFDIQPFVIGDGVADFSLSDHEFSLRYIS 189
>pdb|3TG2|A Chain A, Crystal Structure Of The Isc Domain Of Vibb In Complex
With Isochorismate
Length = 223
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 24 SVLLVIDMQ----NHFSSIAKPILDNTLATVQL---CRRASIPVFFT-RHCHKSPADYGM 75
+VLL+ +MQ ++F S A+PI QL ++A IPV +T + ++ PA+ +
Sbjct: 29 AVLLIHNMQEYFVHYFDSQAEPIPSLIKHIQQLKAHAKQAGIPVVYTAQPANQDPAERAL 88
Query: 76 LGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVI 135
L ++W L + A L PE D + K YSAF + L + L G +++I
Sbjct: 89 LSDFWGPGLSEETAIIAPLAPE------SGDVQLTKWRYSAFKKSPLLDWLRETGRDQLI 142
Query: 136 VCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 182
+ GV ++ +TA DAF+ + F D A L HE +L+ ++
Sbjct: 143 ITGVYAHIGILSTALDAFMFDIQPFVIGDGVADFSLSDHEFSLRYIS 189
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
pdb|3EEF|B Chain B, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
Length = 182
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 12/148 (8%)
Query: 26 LLVIDMQNHF--SSIAKPILDNTLA----TVQLCRRASIPVFFTRHCHKSPADYGMLGEW 79
L+V+D N F +A P T+ ++ RR+ +PV + H P D +
Sbjct: 5 LVVVDXVNEFIHGRLATPEAXKTVGPARKVIETFRRSGLPVVYVNDSH-YPDDPEI--RI 61
Query: 80 WNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGV 139
W G G +E++ EI+ + D V+EK+ YS F T L L G++ V++ G+
Sbjct: 62 W-GRHSXKGDDGSEVIDEIRP--SAGDYVLEKHAYSGFYGTNLDXILRANGIDTVVLIGL 118
Query: 140 MTNLCCETTARDAFVRGFRVFFSTDATA 167
++C TA DA R +R+ DA A
Sbjct: 119 DADICVRHTAADALYRNYRIIVVEDAVA 146
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|C Chain C, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|B Chain B, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|D Chain D, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|E Chain E, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|F Chain F, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|G Chain G, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|H Chain H, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
Length = 204
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 88 GTADAELLPEIKGLVAGADE-VIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCE 146
GT ++ +PE L DE +++K +S F +T L L G++ V++ GV TN+C
Sbjct: 79 GTWGSDFIPE---LYPQEDEYIVQKRRHSGFAHTDLDLYLKEEGIDTVVLTGVWTNVCVR 135
Query: 147 TTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 182
+TA DA ++V +D TA+ E HE L +L+
Sbjct: 136 STATDALANAYKVITLSDGTASKTEEXHEYGLNDLS 171
>pdb|1J2R|A Chain A, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|B Chain B, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|C Chain C, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|D Chain D, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
Length = 199
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 33/194 (17%)
Query: 20 NPKSSVLLVIDMQNHF------SSIAKPILDNTLATVQLCRRASIPVFFTR--------H 65
N K++ L+VID+Q A +++ R + PVF R
Sbjct: 16 NAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWSADYAE 75
Query: 66 CHKSPADY----GMLGE-WWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNT 120
K P D +L E WW GT D+++ E+I K + AF T
Sbjct: 76 ALKQPVDAPSPAKVLPENWWQHPAAL-GTTDSDI------------EII-KRQWGAFYGT 121
Query: 121 RLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKN 180
L+ +L G++ +++CG+ TN+ E+TAR+A+ GF + + DA + + E H ++ +
Sbjct: 122 DLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINH 181
Query: 181 LAYGFAYLFDCERL 194
+ A + E +
Sbjct: 182 IYPRIARVRSVEEI 195
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus
Horikoshii In Complex With Zinc
pdb|1ILW|A Chain A, Crystal Structure Of PyrazinamidaseNICOTINAMIDASE OF
Pyrococcus Horikoshii
Length = 180
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 26 LLVIDMQNHF---SSIAKPILDNTLATV----QLCRRASIPVFFTRHCH-KSPADYGMLG 77
L+V+DMQ F ++ P D + V + + + TR H ++ + G
Sbjct: 6 LIVVDMQRDFMPGGALPVPEGDKIIPKVNEYIRKFKEKGALIVATRDWHPENHISFRERG 65
Query: 78 EWWNGDLVYDGTADAEL---LPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEV 134
W V + T AE LPE +++ A E +K YS F T L + L G GV+ V
Sbjct: 66 GPWPRHCVQN-TPGAEFVVDLPEDAVIISKATEP-DKEAYSGFEGTDLAKILRGNGVKRV 123
Query: 135 IVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNL 181
+CGV T C TA DA GF V+ DA E E L+ +
Sbjct: 124 YICGVATEYCVRATALDALKHGFEVYLLRDAVKGIKPEDEERALEEM 170
>pdb|4H17|A Chain A, Crystal Structure Of An Isochorismatase (Pp1826) From
Pseudomonas Putida Kt2440 At 1.60 A Resolution
pdb|4H17|B Chain B, Crystal Structure Of An Isochorismatase (Pp1826) From
Pseudomonas Putida Kt2440 At 1.60 A Resolution
Length = 197
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 29/175 (16%)
Query: 26 LLVIDMQNHFSSIAKPI----LDNTLATV----QLCRRASIPVFFTRHCHKSPADYGMLG 77
L++ID Q + ++ P+ D +A + R++ P+ RH G +G
Sbjct: 26 LIIIDAQKEY--LSGPLKLSGXDEAVANIARLLDAARKSGRPIIHVRH-------LGTVG 76
Query: 78 EWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVC 137
++ G A + +P ++ L + VIEK +AF NT+L E L +G ++IVC
Sbjct: 77 GRFD----PQGPA-GQFIPGLEPLEG--EIVIEKRXPNAFKNTKLHETLQELGHLDLIVC 129
Query: 138 GVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCE 192
G ++ TT R A G+R DA+AT DL + + A + CE
Sbjct: 130 GFXSHSSVSTTVRRAKDYGYRCTLVEDASATRDLAFKDGVIPA-----AQIHQCE 179
>pdb|1NF9|A Chain A, Crystal Structure Of Phzd Protein From Pseudomonas
Aeruginosa
Length = 207
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 11/170 (6%)
Query: 20 NPKSSVLLVIDMQNHF-----SSIAKPILDNTLATVQLCRRASIPVFFT-RHCHKSPADY 73
P+ +VLLV DMQ +F S+ ++ N + C + + +T + +
Sbjct: 28 EPRRAVLLVHDMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQR 87
Query: 74 GMLGEWWNGDLVYDGTADAELLPEIKGLVAGADE-VIEKNTYSAFGNTRLQERLVGMGVE 132
G+L ++W G + AD E++ E L G D+ ++ K YSAF ++ L +R+ G +
Sbjct: 88 GLLKDFW-GPGMRASPADREVVEE---LAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRD 143
Query: 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 182
++++CGV ++ + DA+ + F DA A H L+ A
Sbjct: 144 QLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAA 193
>pdb|3R77|A Chain A, Crystal Structure Of The D38a Mutant Of Isochorismatase
Phzd From Pseudomonas Fluorescens 2-79 In Complex With
2-Amino-2- Desoxyisochorismate Adic
pdb|3R77|B Chain B, Crystal Structure Of The D38a Mutant Of Isochorismatase
Phzd From Pseudomonas Fluorescens 2-79 In Complex With
2-Amino-2- Desoxyisochorismate Adic
Length = 209
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 20 NPKSSVLLVIDMQNHF-----SSIAKPILDNTLATVQLCRRASIPVFFT-RHCHKSPADY 73
+P+ +VLLV MQ +F ++ ++ N Q +PV +T + +
Sbjct: 30 DPERAVLLVHAMQRYFLRPLPDALRDQVVGNAARIRQWAADNGVPVAYTAQPGSMNEEQR 89
Query: 74 GMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEE 133
G+L ++W + T D E++ + D ++ K YSAF N+ L +RL G ++
Sbjct: 90 GLLKDFWGPGMKASPT-DREVVDALAP--QPGDWLLTKWRYSAFFNSDLLQRLHASGRDQ 146
Query: 134 VIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 182
+I+CGV ++ ++ DA+ + F DA A E H ++ A
Sbjct: 147 LILCGVYAHVGVLISSVDAYSNDIQPFLVADAIADFSKEHHWMAMEYAA 195
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
pdb|2WT9|B Chain B, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 235
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 77/189 (40%), Gaps = 37/189 (19%)
Query: 16 KRNPNPKSSVLLVIDMQNHFS---SIAKPILDNTLATVQLCRRASIPVFFTRHCH----- 67
K N P++S L+V+D+QN F+ ++A D + T+ V T+ H
Sbjct: 23 KMNKQPQNSALVVVDVQNGFTPGGNLAVADADTIIPTINQLAGCFENVVLTQDWHPDNHI 82
Query: 68 --------KSP-----ADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEK--- 111
K P DYG W GT DAE P++ + A +I K
Sbjct: 83 SFAANHPGKQPFETIELDYGSQVLW--PKHCIQGTHDAEFHPDLN--IPTAQLIIRKGFH 138
Query: 112 ---NTYSAFGN------TRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFS 162
++YSAF T L L G++ V V G+ T+ C TA DA +GF+
Sbjct: 139 AHIDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCVAWTALDAVKQGFKTLVI 198
Query: 163 TDATATSDL 171
DA DL
Sbjct: 199 EDACKGIDL 207
>pdb|1NF8|A Chain A, Crystal Structure Of Phzd Protein Active Site Mutant With
Substrate
Length = 207
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 11/170 (6%)
Query: 20 NPKSSVLLVIDMQNHF-----SSIAKPILDNTLATVQLCRRASIPVFFT-RHCHKSPADY 73
P+ +VLLV MQ +F S+ ++ N + C + + +T + +
Sbjct: 28 EPRRAVLLVHAMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQR 87
Query: 74 GMLGEWWNGDLVYDGTADAELLPEIKGLVAGADE-VIEKNTYSAFGNTRLQERLVGMGVE 132
G+L ++W G + AD E++ E L G D+ ++ K YSAF ++ L +R+ G +
Sbjct: 88 GLLKDFW-GPGMRASPADREVVEE---LAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRD 143
Query: 133 EVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 182
++++CGV ++ + DA+ + F DA A H L+ A
Sbjct: 144 QLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAA 193
>pdb|1NBA|A Chain A, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|B Chain B, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|C Chain C, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|D Chain D, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
Length = 264
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 6 CSSYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAKP--------ILDNTLATVQLCRRAS 57
S Y + ++R ++ ID+ N ++ P I+ N + R
Sbjct: 27 TSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKG 86
Query: 58 IPVFFTRHCHKS-PADYGM--LGEWWNGDLVYDGTADAELLPEIKGLVAGADE--VIEKN 112
+PVF+T + +++ A G +G W++ AD+ +I +A AD VIEKN
Sbjct: 87 VPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADS-YWAQIDDRIAPADGEVVIEKN 145
Query: 113 TYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFR 158
SAF T L+ L ++ +IV G C T DA +GFR
Sbjct: 146 RASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFR 191
>pdb|1YAC|A Chain A, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
pdb|1YAC|B Chain B, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
Length = 208
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 26/159 (16%)
Query: 24 SVLLVIDMQNHFSSIAKPI-----LDNTLATVQLCRRASIPVFFTRHCHKSPADYGMLGE 78
+ +L++D Q S+ + I +N LA L + ++P T P
Sbjct: 13 AAVLLVDHQAGLLSLVRDIEPDKFKNNVLALGDLAKYFNLPTILTTSAETGP-------- 64
Query: 79 WWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCG 138
NG LV PE+K A + +A+ N + + G +++I+ G
Sbjct: 65 --NGPLV----------PELKAQFPDAPYIARPGNINAWDNEDFVKAVKATGKKQLIIAG 112
Query: 139 VMTNLCCETTARDAFVRGFRVFFSTDATAT-SDLELHEA 176
V+T +C A A GF VF TDA+ T +++ H A
Sbjct: 113 VVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSA 151
>pdb|3TXY|A Chain A, Structure Of An Isochorismatase Family Protein
(Bth_ii2229) From Burkholderia Thailandensis
Length = 199
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 106 DEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDA 165
D V+ K+ + AF T L +L G+ ++++ G+ TN+ E+TAR+A+ + V +DA
Sbjct: 101 DVVVTKHQWGAFTGTDLDVQLRRRGITDIVLTGIATNIGVESTAREAYENNYNVVVVSDA 160
Query: 166 TATSDLELHEATLKNLAYGFAYLFDCERLEAGL 198
+T + L + + +EA L
Sbjct: 161 VSTWSTDAQTFALTQIFPKLGQVATAADVEAAL 193
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|B Chain B, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|C Chain C, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|D Chain D, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
Length = 217
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 109 IEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATAT 168
++K YSAF T L RL V+ V++ GV+T++C TA DA+ G+++ A A+
Sbjct: 135 MDKRHYSAFSGTDLDIRLRERRVDTVVLTGVLTDICVLHTAIDAYNLGYQIEVVQSAVAS 194
Query: 169 SDLELHEATLKNL 181
E H+ L +L
Sbjct: 195 LSQENHQFALNHL 207
>pdb|2WTA|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 213
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 18 NPNPKSSVLLVIDMQNHFS---SIAKPILDNTLATVQLCRRASIPVFFTRHCH------- 67
N P++S L+V+D+QN F+ ++A D + T+ V T+ H
Sbjct: 2 NKQPQNSALVVVDVQNGFTPGGNLAVADADTIIPTINQLAGCFENVVLTQDWHPDNHISF 61
Query: 68 ------KSP-----ADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEK----- 111
K P DYG W GT DAE P++ + A +I K
Sbjct: 62 AANHPGKQPFETIELDYGSQVLW--PKHCIQGTHDAEFHPDLN--IPTAQLIIRKGFHAH 117
Query: 112 -NTYSAFGN------TRLQERLVGMGVEEVIVCGVMTNLC-CETTARDAFVRGFRVFFST 163
++YSAF T L L G++ V V G+ T+ C TA DA +GF+
Sbjct: 118 IDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCXVAWTALDAVKQGFKTLVIE 177
Query: 164 DATATSDL 171
DA DL
Sbjct: 178 DACKGIDL 185
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 109 IEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATAT 168
++K YSAF T L RL V VI+ GV+T++C TA DA+ G+ + A A+
Sbjct: 121 MDKRHYSAFSGTDLDIRLRERRVSTVILTGVLTDICVLHTAIDAYNLGYDIEIVKPAVAS 180
Query: 169 SDLELHEATLKNL 181
E H+ L +
Sbjct: 181 IWPENHQFALGHF 193
>pdb|3OT4|A Chain A, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|B Chain B, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|C Chain C, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|D Chain D, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|E Chain E, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|F Chain F, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|G Chain G, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|H Chain H, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3UAO|A Chain A, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|B Chain B, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|C Chain C, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|D Chain D, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|E Chain E, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|F Chain F, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|G Chain G, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|H Chain H, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
Length = 236
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 11/188 (5%)
Query: 8 SYEKYEIRKRNPNPKSSVLLVIDMQNHFSSIAK-------PILDNTLATVQLCRRASIPV 60
SYE+ P LL++D N F+ A+ ++ T + R V
Sbjct: 29 SYERQGFGAALPLKAPYGLLIVDFVNGFADPAQFGGGNIAAAIETTRTVLAAARERGWAV 88
Query: 61 FFTRHCHKSP-ADYGMLGEWWNGDLVYDGTADAE-LLPEIKGLVAGADEVIEKNTYSAFG 118
+R + AD + G L A A ++P++ + V+ K+T SAF
Sbjct: 89 AHSRIVYADDDADGNIFSIKVPGMLTLKEHAPASAIVPQLA--PQAGEYVVRKSTPSAFY 146
Query: 119 NTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATL 178
T L L GV+ ++V G T+ + DA GFR +D L HEA L
Sbjct: 147 GTMLAAWLAQRGVQTLLVAGATTSGXVRASVVDAMSAGFRPLVLSDCVGDRALGPHEANL 206
Query: 179 KNLAYGFA 186
++ +A
Sbjct: 207 FDMRQKYA 214
>pdb|2A67|A Chain A, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|B Chain B, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|C Chain C, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|D Chain D, Crystal Structure Of Isochorismatase Family Protein
Length = 167
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 23/155 (14%)
Query: 22 KSSVLLVIDMQNHFSSIAKP------ILDNTLATVQLCRRASIPVFFTRHCHKSPADYGM 75
K+ LL+ID Q S + +LD + + R+ P+ F +H ++ +G
Sbjct: 3 KNRALLLIDFQKGIESPTQQLYRLPAVLDKVNQRIAVYRQHHAPIIFVQH-EETELPFG- 60
Query: 76 LGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVI 135
+D+ L E K D I K +AF T L + L V+ +
Sbjct: 61 --------------SDSWQLFE-KLDTQPTDFFIRKTHANAFYQTNLNDLLTEQAVQTLE 105
Query: 136 VCGVMTNLCCETTARDAFVRGFRVFFSTDATATSD 170
+ GV T C +TT R A G+ + T+T D
Sbjct: 106 IAGVQTEFCVDTTIRXAHGLGYTCLXTPKTTSTLD 140
>pdb|3O94|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 109 IEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATAT 168
++K YSAF T L RL V VI+ GV+T++ TA DA+ G+ + A A+
Sbjct: 121 MDKRHYSAFSGTDLDIRLRERRVSTVILTGVLTDISVLHTAIDAYNLGYDIEIVKPAVAS 180
Query: 169 SDLELHEATLKNL 181
E H+ L +
Sbjct: 181 IWPENHQFALGHF 193
>pdb|3O91|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 109 IEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATAT 168
++K YSAF T L RL V VI+ GV+T++ TA DA+ G+ + A A+
Sbjct: 121 MDKRHYSAFSGTDLDIRLRERRVSTVILTGVLTDIXVLHTAIDAYNLGYDIEIVKPAVAS 180
Query: 169 SDLELHEATLKNL 181
E H+ L +
Sbjct: 181 IWPENHQFALGHF 193
>pdb|3HU5|A Chain A, Crystal Structure Of Isochorismatase Family Protein From
Desulfovibrio Vulgaris Subsp. Vulgaris Str.
Hildenborough
pdb|3HU5|B Chain B, Crystal Structure Of Isochorismatase Family Protein From
Desulfovibrio Vulgaris Subsp. Vulgaris Str.
Hildenborough
Length = 204
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Query: 22 KSSVLLVIDMQNHFSSIAKPI-LDNTLATVQ----LCRRASIPVFFTRHCHKSPADYGML 76
++ L +ID QN F P ++ TV L +A + H ++ G
Sbjct: 7 RTVALAIIDXQNDFVLPGAPACVEGAXGTVPVIAGLLAKARAEGWXVLHVVRAHRADGSD 66
Query: 77 GE-------WWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGM 129
E G L GT AE++ ++ A + V+ K +SAF T L
Sbjct: 67 AEKSREHLFLEGGGLCVAGTPGAEIVAGLE--PASGETVLVKTRFSAFXGTECDXLLRRR 124
Query: 130 GVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKN 180
GV+ ++V G C TA DAF + V TDA + + E+ + +
Sbjct: 125 GVDTLLVSGTQYPNCIRGTAVDAFALDYDVVVVTDACSARTPGVAESNIND 175
>pdb|3R2J|A Chain A, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|B Chain B, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|C Chain C, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|D Chain D, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
Length = 227
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 110 EKNTYSAFG-----NTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTD 164
+ ++YSAF +T L L +G V VCGV + C TA DA GF V D
Sbjct: 131 QADSYSAFVEDNGVSTGLAGLLHSIGARRVFVCGVAYDFCVFFTAMDARKNGFSVVLLED 190
Query: 165 ATATSD 170
TA D
Sbjct: 191 LTAAVD 196
>pdb|3OQP|A Chain A, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22 A
Resolution
pdb|3OQP|B Chain B, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22 A
Resolution
Length = 211
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 26 LLVIDMQNHFSS----IAKPILDNTLATVQLCRRA----SIPVFFTRHCHKSPADYGMLG 77
L+VID+QN + + I P + ++LA + A +PV ++ +PA +
Sbjct: 9 LIVIDVQNEYVTGDLPIEYPDVQSSLANIARAXDAARAAGVPVVIVQNF--APAGSPLFA 66
Query: 78 EWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVC 137
NG AEL P + D +EK+ SAF T L L ++ + V
Sbjct: 67 RGSNG---------AELHPVVSER--ARDHYVEKSLPSAFTGTDLAGWLAARQIDTLTVT 115
Query: 138 GVMTNLCCETTARDAFVRGFRVFFSTDATATSDLE 172
G T+ +T A G V F DAT + E
Sbjct: 116 GYXTHNXDASTINHAVHSGLAVEFLHDATGSVPYE 150
>pdb|2B34|A Chain A, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
pdb|2B34|B Chain B, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
pdb|2B34|C Chain C, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
pdb|2B34|D Chain D, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
pdb|2B34|E Chain E, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
pdb|2B34|F Chain F, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
pdb|2B34|G Chain G, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
pdb|2B34|H Chain H, Structure Of Mar1 Ribonuclease From Caenorhabditis Elegans
Length = 199
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 66/184 (35%), Gaps = 27/184 (14%)
Query: 20 NPKSSVLLVIDMQNHFSSIAK---PILDNTLATVQLCRRASIPVFFTRHCHKSPADYGML 76
NP +S L V D+Q F+S K I+ + + R SIP T K L
Sbjct: 11 NPTNSALFVCDLQEKFASNIKYFPEIITTSRRLIDAARILSIPTIVTEQYPKG------L 64
Query: 77 GEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIV 136
G +P +K +A + +K +S ++ L V+ VI+
Sbjct: 65 GHT---------------VPTLKEGLAENTPIFDKTKFS-MCIPPTEDTL--KKVQNVIL 106
Query: 137 CGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLAYGFAYLFDCERLEA 196
G+ ++C T D RG V DA ++ K + A L E
Sbjct: 107 VGIEAHVCVLQTTYDLLERGLNVHVVVDAVSSRSHTDRHFAFKQMEQAGAILTTSEATIL 166
Query: 197 GLFG 200
GL G
Sbjct: 167 GLVG 170
>pdb|3O38|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Smegmatis
pdb|3O38|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Smegmatis
pdb|3O38|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Smegmatis
pdb|3O38|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Smegmatis
Length = 266
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 99 KGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFV 154
+ L+ GAD VI G TR Q +G+G E +VC V + T A DA +
Sbjct: 42 RALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS-----TEAVDALI 92
>pdb|1DE5|A Chain A, L-Rhamnose Isomerase
pdb|1DE5|B Chain B, L-Rhamnose Isomerase
pdb|1DE5|C Chain C, L-Rhamnose Isomerase
pdb|1DE5|D Chain D, L-Rhamnose Isomerase
pdb|1DE6|A Chain A, L-Rhamnose Isomerase
pdb|1DE6|B Chain B, L-Rhamnose Isomerase
pdb|1DE6|C Chain C, L-Rhamnose Isomerase
pdb|1DE6|D Chain D, L-Rhamnose Isomerase
Length = 426
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 57 SIPVFFTRHCHKSPADYGMLGEW---------WNGDLVYDGTADAELLPEIKGLVAGADE 107
SI F+ HC S GE W D + D T D L P + L+A DE
Sbjct: 160 SIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVD-RLAPRQR-LLAALDE 217
Query: 108 VIEKNTYSAFGNTRLQERLVGMGVEEVIV 136
VI + A ++ +L G+G E V
Sbjct: 218 VISEKLNPAHHIDAVESKLFGIGAESYTV 246
>pdb|1D8W|A Chain A, L-Rhamnose Isomerase
pdb|1D8W|B Chain B, L-Rhamnose Isomerase
pdb|1D8W|C Chain C, L-Rhamnose Isomerase
pdb|1D8W|D Chain D, L-Rhamnose Isomerase
Length = 426
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 57 SIPVFFTRHCHKSPADYGMLGEW---------WNGDLVYDGTADAELLPEIKGLVAGADE 107
SI F+ HC S GE W D D T D L P + L+A DE
Sbjct: 160 SIRQFWIDHCKASRRVSAYFGEQLGTPSVXNIWIPDGXKDITVD-RLAPRQR-LLAALDE 217
Query: 108 VIEKNTYSAFGNTRLQERLVGMGVEEVIV 136
VI + A ++ +L G+G E V
Sbjct: 218 VISEKLNPAHHIDAVESKLFGIGAESYTV 246
>pdb|3UPG|A Chain A, Loop Deletion Mutant Of Salmonella Typhi Osmoporin
(Ompc):an Outer Membrane Protein
Length = 338
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 84 LVYDGTADAELLPEIKGLVAGADEVIEK--NTYSAFGNT 120
+ YD T+ ++LPE G GAD +++ N Y+ + NT
Sbjct: 96 VTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNT 134
>pdb|3UU2|A Chain A, Salmonella Typhi Osmoporin(Ompc):an Outer Membrane Protein
pdb|3UU2|B Chain B, Salmonella Typhi Osmoporin(Ompc):an Outer Membrane Protein
pdb|3UU2|C Chain C, Salmonella Typhi Osmoporin(Ompc):an Outer Membrane Protein
Length = 357
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 71 ADYGMLGEWWNGDLVYDGTADAELLPEIKGLVAGADEVIEK--NTYSAFGNT 120
AD G N + YD T+ ++LPE G GAD +++ N Y+ + NT
Sbjct: 83 ADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNT 134
>pdb|1ZP4|A Chain A, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
pdb|1ZP4|B Chain B, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
pdb|1ZP4|C Chain C, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
Length = 304
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 89 TADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVM 140
+A A+LL + + AGA+ I + + R ++R V G++ I+ G++
Sbjct: 161 SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGIL 212
>pdb|1ZP3|A Chain A, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZP3|B Chain B, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZP3|C Chain C, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZPT|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZPT|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZPT|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZRQ|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
pdb|1ZRQ|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
pdb|1ZRQ|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
Length = 304
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 89 TADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVM 140
+A A+LL + + AGA+ I + + R ++R V G++ I+ G++
Sbjct: 161 SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGIL 212
>pdb|3FSU|A Chain A, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
pdb|3FSU|C Chain C, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
pdb|3FSU|E Chain E, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
Length = 304
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 89 TADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVM 140
+A A+LL + + AGA+ I + + R ++R V G++ I+ G++
Sbjct: 161 SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGIL 212
>pdb|1B5T|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
pdb|1B5T|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
pdb|1B5T|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
Length = 275
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 89 TADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVM 140
+A A+LL + + AGA+ I + + R ++R V G++ I+ G++
Sbjct: 141 SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGIL 192
>pdb|3FST|A Chain A, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
pdb|3FST|C Chain C, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
pdb|3FST|E Chain E, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
Length = 304
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 89 TADAELLPEIKGLVAGADEVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVM 140
+A A+LL + + AGA+ I + + R ++R V G++ I+ G++
Sbjct: 161 SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGIL 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,939,170
Number of Sequences: 62578
Number of extensions: 232403
Number of successful extensions: 590
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 47
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)